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ORCID6th BIBE 2006: Arlington, Virginia, USA
- Sixth IEEE International Symposium on BioInformatics and BioEngineering (BIBE 2006), 16-18 October 2006, Arlington, Virginia, USA. IEEE Computer Society 2006, ISBN 0-7695-2727-2
Session 1 : Protein Structure, Function, and Classification
- Mary Qu Yang, Jack Y. Yang:
IUP: Intrinsically Unstructured Protein predictor - A software tool for analyzing polypeptide sequences. 3-11 - Xiaodan Zhang, Daniel Duanqing Wu, Xiaohua Zhou, Xiaohua Hu:
A Language Modeling Text Mining Approach to the Annotation of Protein Community. 12-19 - Bernard Chen, Phang C. Tai, Robert W. Harrison
, Yi Pan:
FIK Model: Novel Efficient Granular Computing Model for Protein Sequence Motifs and Structure Information Discovery. 20-26 - Weijia Xu, Rui Mao, Shu Wang, Daniel P. Miranker:
On Integrating Peptide Sequence Analysis and Relational Distance-Based Indexing. 27-34 - Jack Y. Yang, Mary Qu Yang:
Assessing protein function using a combination of supervised and unsupervised learning. 35-44
Session 2 : Pattern Discovery and Data Mining
- Di Wang, Guoren Wang, Qingquan Wu, Baichen Chen, Changyong Yu, Yi Zhao, Ge Yu:
Partition Frequency Distance based Filter Method for Finding Approximate Repetitions in DNA Sequences. 45-52 - Kang Ning, Hoong Kee Ng, Hon Wai Leong:
Finding Patterns in Biological Sequences by Longest Common Subsequencesand Shortest Common Supersequences. 53-60 - Wei Peng, Tao Li, Giri Narasimhan:
Mining the Database of Transcription Binding Sites. 61-64 - Jaime I. Dávila, Sanguthevar Rajasekaran:
Extending Pattern Branching to Handle Challenging Instances. 65-69 - Henry C. M. Leung, Francis Y. L. Chin:
Discovering DNA Motifs with Nucleotide Dependency. 70-80
Session 3: Microarrays
- Kaushik Sinha, Ruoming Jin, Gagan Agrawal, Helen Piontkivska:
Exploratory Tools for FollowUp Studies to Microarray Experiments. 81-85 - Yuhai Zhao, Guoren Wang, Ying Yin, Ge Yu:
Mining Positive and Negative Co-regulation Patterns from Microarray Data. 86-93 - Youngmi Yoon, Jongchan Lee, Sanghyun Park:
Building a Classifier for Integrated Microarray Datasets through Two-Stage Approach. 94-102 - Wei Peng, Tao Li:
IntClust: A Software Package for Clustering Replicated Microarray Data. 103-109 - Liping Ji, Kenneth Wei-Liang Mock, Kian-Lee Tan:
Quick Hierarchical Biclustering on Microarray Gene Expression Data. 110-120
Session 4: Sequence Alignment and Database Search
- Abdullah N. Arslan, Dan He:
An improved algorithm for the regular expression constrained multiple sequence alignment problem. 121-126 - Perry G. Ridge, Hyrum Carroll, Dan Sneddon, Mark J. Clement, Quinn Snell:
Large Grain Size Stochastic Optimization Alignment. 127-134 - Qiang Xue, James R. Cole, Sakti Pramanik:
Sequence Homology Search Based on Database Indexing Using the Profile Hidden Markov Model. 135-140 - Xuan Zhang, Gagan Agrawal:
A Tool for Supporting Integration Across Multiple FlatFile Datasets. 141-148 - Rimon Mikhaiel, Guohui Lin, Eleni Stroulia:
Simplicity in RNA Secondary Structure Alignment: Towards biologically plausible alignments. 149-158
Session 5: Phylogenies, Trees, and Visualization
- Usman Roshan, Dennis R. Livesay, Satish Chikkagoudar:
Improving progressive alignment for phylogeny reconstruction using parsimonious guide-trees. 159-164 - Yuanjian Feng, Zuyi Wang, Yitan Zhu, Jianhua Xuan, David J. Miller:
Learning the Tree of Phenotypes Using Genomic Data and VISDA. 165-170 - Margaret H. Dunham, Donya Quick, Yuhang Wang, Monnie McGee, Jim Waddle:
Visualization of DNA/RNA Structure using Temporal CGRs. 171-178 - Douglas W. Raiford, Dan E. Krane, Travis E. Doom, Michael L. Raymer:
Isolation and Visualization of Codon Usage Biases. 179-183 - Daniel A. Keim, Daniela Oelke, Royal Truman, Klaus Neuhaus:
Finding Correlations in Functionally Equivalent Proteins by Integrating Automated and Visual Data Exploration. 183-192 - Bing Bing Zhou, Monther Tarawneh, Penghao Wang, Daniel Chu, Chen Wang, Albert Y. Zomaya, Richard P. Brent:
Evidence of Multiple Maximum Likelihood Points for a Phylogenetic Tree. 193-200
Session 6: DNA & RNA Sequence and Structure
- Xiaoming Wu, Jason Tsong-Li Wang, Katherine G. Herbert:
A New Kernel Method for RNA Classification. 201-208 - Mugdha Khaladkar, Vivian Bellofatto, Jason T. L. Wang, Bin Tian, Kaizhong Zhang:
RADAR: An InteractiveWeb-Based Toolkit for RNA Data Analysis and Research. 209-212 - Sridhar Ramachandran, Travis E. Doom, Michael L. Raymer, Dan E. Krane:
Parsimony approach to test the Evolving Master Gene hypothesis for human Alu repeats. 213-219 - Abdullah N. Arslan:
An algorithm for string edit distance allowing substring reversals. 220-226 - Young Bun Kim, Jean Gao:
Unsupervised Gene Selection For High Dimensional Data. 227-234
Session 7: Clustering, Similarity Metrics, and Near Neighbor Methods
- Zhipeng Cai, Lizhe Xu, Yi Shi, Mohammad R. Salavatipour, Randy Goebel, Guohui Lin:
Using Gene Clustering to Identify Discriminatory Genes with Higher Classification Accuracy. 235-242 - Yongyang Huo, Francisco Azuaje, Paul J. McCullagh, Roy Harper:
Semi-Supervised Clustering Models for Clinical Risk Assessment. 243-250 - Chuan Lin, Daxin Jiang, Aidong Zhang:
Prediction of Protein Function Using Common-Neighbors in Protein-Protein Interaction Networks. 251-260 - Elinor Velasquez, Emmanuel R. Yera, Rahul Singh:
Determining Molecular Similarity for Drug Discovery using the Wavelet Riemannian Metric. 261-268 - Xuan Zhang, Ruoming Jin, Gagan Agrawal:
Assigning Schema Labels Using Ontology And Hueristics. 269-280
Session 8: Regulatory and Metabolic Networks and Bioengineering I
- Osman Abul, Reda Alhajj, Faruk Polat:
Optimal Multi-Objective Control Method for Discrete Genetic Regulatory Networks. 281-284 - Zachary M. Saul, Vladimir Filkov:
Methods for Random Modularization of Biological Networks. 285-288 - Young-Rae Cho, Woochang Hwang, Aidong Zhang:
Efficient Modularization of Weighted Protein Interaction Networks using k-Hop Graph Reduction. 289-298 - Dong-Guk Shin, John Bluis, Yoo Ah Kim, Winfried Krueger, Jeffrey Maddox, Ravi Nori, Nathan Viniconis, Hsin-Wei Wang, Alan Wong, David W. Rowe:
A Computational Inference Framework for analyzing Gene Regulation Pathway using Microarray Data. 299-306 - Xiang Xiao, Malika Mahoui, Zina Ben-Miled, B. Choudhury:
The Automation of SIBIOS Workflow Composition. 307-314
Session 9: Bioengineering II
- Hisham Al-Mubaid, Hoa A. Nguyen:
Using MEDLINE as Standard Corpus for Measuring Semantic Similarity in the Biomedical Domain. 315-318 - Lothar Richter, Stefan Hechtl, Stefan Kramer:
Leveraging Chemical Background Knowledge for the Prediction of Growth Inhibition. 319-324 - Marisol Giardina, Francisco Azuaje, Paul J. McCullagh, Roy Harper:
A Supervised Learning Approach to Predicting Coronary Heart Disease Complications in Type 2 Diabetes Mellitus Patients. 325-331 - Jung Hun Oh, Animesh Nandi, Prem Gurnani, Peter Bryant-Greenwood, Kevin P. Rosenblatt, Jean Gao:
Prediction of labor for pregnant women using high-resolution mass spectrometry data. 332-339 - Yi Zhu, Tong Lee Chen, Wanping Zhang, Tzyy-Ping Jung, Jeng-Ren Duann, Scott Makeig, Chung-Kuan Cheng:
Noninvasive Study of the Human Heart using Independent Component Analysis. 340-347 - Anna Esposito, Nikolaos G. Bourbakis:
The Role of Timing in Speech Perception and Speech Production Processes and its Effects on Language Impaired Individuals. 348-356 - Nikolaos G. Bourbakis, Anna Esposito, Despina Kavraki:
Analysis of Invariant Meta-features for Learning and Understanding Disable People's Emotional Behavior Related to Their Health Conditions: A Case Study. 357-369
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