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ORCIDBIBM 2007: Silicon Valley, CA, USA
- Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2007, Silicon Valley, CA, USA, November 2-4, 2007. IEEE Computer Society 2007, ISBN 0-7695-3031-1
Kenotes
- Russ B. Altman:
Combining Simulation and Machine Learning to Recognize Function in 4D. 3 - Michael I. Jordan:
Statistical Machine Learning and Computational Biology. 4 - Richard M. Karp:
Computer Science as a Lens on the Sciences: The Example of Computational Molecular Biology. 5
Biological Data Mining
- Lei Yu, Hao Li:
Feature Cluster Selection for High-Throughput Data Analysis. 9-14 - Ricardo Martínez, Claude Pasquier, Nicolas Pasquier:
GenMiner: Mining Informative Association Rules from Genomic Data. 15-22 - Sun Kim, Ankita Bhan, Bharath K. Maryada, Kwangmin Choi, Yves V. Brun:
EGGS: Extraction of Gene Clusters Using Genome Context Based Sequence Matching Techniques. 23-28 - Mutlu Mete, Xiaowei Xu, Chun-Yang Fan, Gal Shafirstein:
A Machine Learning Approach for Identification of Head and Neck Squamous Cell Carcinoma. 29-34 - Feihong Wu, Fadi Towfic, Drena Dobbs, Vasant G. Honavar:
Analysis of Protein Protein Dimeric Interfaces. 35 - Min Song, Illhoi Yoo:
A Hybrid Abbreviation Extraction Technique for Biomedical Literature. 42-47 - Dharmesh Thakkar, Carolina Ruiz, Elizabeth F. Ryder:
Hypothesis-Driven Specialization of Gene Expression Association Rules. 48-55 - Razvan Andonie, Levente Fabry-Asztalos, Lukas Magill, Sarah Abdul-Wahid:
A New Fuzzy ARTMAP Approach for Predicting Biological Activity of Potential HIV-1 Protease Inhibitors. 56-61 - Yutaka Sasaki, Brian Rea, Sophia Ananiadou:
Multi-topic Aspects in Clinical Text Classification. 62-70
High Performance Bio-computing
- Jaegul Choo, Hyunsoo Kim, Haesun Park, Hongyuan Zha:
A Comparison of Unsupervised Dimension Reduction Algorithms for Classification. 71-77 - Antonio Ruiz, Olcay Sertel, Manuel Ujaldon, Ümit V. Çatalyürek, Joel H. Saltz, Metin N. Gurcan:
Pathological Image Analysis Using the GPU: Stroma Classification for Neuroblastoma. 78-88
Genomics, Comparative Genomics
- Winnie W. M. Lam, Keith C. C. Chan, David K. Y. Chiu, Andrew K. C. Wong:
MAGMA: An Algorithm for Mining Multi-level Patterns in Genomic Data. 89-94 - Arnaud Fontaine, Hélène Touzet:
Computational Identification of Protein-Coding Sequences by Comparative Analysis. 95-102 - Jia Zeng, Reda Alhajj:
Multi-agent System for Translation Initiation Site Prediction. 103-110
Biological Databases, Data Integration and Visualization
- Denise Jones, Ying Jin, Huaqin Xu:
An Active Rule-Based Approach for Constraint Management of Biological Data in XML Documents. 111-116 - Paul M. K. Gordon, Edward A. Kawas, Mark D. Wilkinson, Christoph W. Sensen:
Using a Novel Data Transformation Technique to Provide the EMBOSS Software Suite as Semantic Web Services. 117-124 - Dragana Veljkovic, Kay A. Robbins, Doug Rubino, Nicholas G. Hatsopoulos:
Exploring and Organizing Spatiotemporal Features such as Waves in High Throughput Brain Recordings by Lifting to Feature Space. 125-134
Molecular Sequence Analysis
- Shengyin Gu, Olivier Poch, Bernd Hamann, Patrice Koehl:
A Geometric Representation of Protein Sequences. 135-142 - Feng Yue, Jijun Tang:
A Divide-and-Conquer Implementation of Three Sequence Alignment and Ancestor Inference. 143-150 - Dan He, Xindong Wu, Xingquan Zhu:
SAIL-APPROX: An Efficient On-Line Algorithm for Approximate Pattern Matching with Wildcards and Length Constraints. 151-158 - Lenwood S. Heath, Amrita Pati:
Predicting Markov Chain Order in Genomic Sequences. 159-164 - Abanish Singh, Cédric Feschotte, Nikola Stojanovic:
Micro-repetitive Structure of Genomic Sequences and the Identification of Ancient Repeat Elements. 165-171 - Shihyen Chen, Bin Ma, Kaizhong Zhang:
The Normalized Similarity Metric and Its Applications. 172-180
Healthcare Informatics
- Kimiko Matsuoka, Shigeki Yokoyama, Kunitomo Watanabe, Shusaku Tsumoto:
Mining Rules for Risk Factors on Blood Stream Infection in Hospital Information System. 181-187 - Soo-Yeon Ji, Toan Huynh, Kayvan Najarian:
A Comparative Medical Informatics Approach to Traumatic Pelvic Injuries. 188-193 - Oliver Amft, Martin Kusserow, Gerhard Tröster:
Automatic Identification of Temporal Sequences in Chewing Sounds. 194-201 - Sai T. Moturu, William G. Johnson, Huan Liu:
Predicting Future High-Cost Patients: A Real-World Risk Modeling Application. 202-208 - Aaron M. Smalter, Seak Fei Lei, Xue-wen Chen:
Human Disease-Gene Classification with Integrative Sequence-Based and Topological Features of Protein-Protein Interaction Networks. 209-216
Proteomics, Computational Proteomics
- Tingting Li, Hu Fu, Xuegong Zhang:
Prediction of Kinase-Specific Phosphorylation Sites by One-Class SVMs. 217-222 - Byung-Hoon Park, Bing Zhang, Tatiana V. Karpinets, Nagiza F. Samatova:
Multi-stage Framework to Infer Protein Functional Modules from Mass Spectrometry Pull-Down Data with Assessment of Biological Relevance. 223-229 - Karin Noy, Daniel P. Fasulo:
Robust Estimation and Graph-Based Meta Clustering for LC-MS Feature Extraction. 230-236 - Jung Hun Oh, Young Bun Kim, Jean Gao:
A Novel Classification Method for Analysis of Multi-stage Diseases via Mass Spectrometric Data. 237-244
Protein Structure
- Satu Jääskeläinen, Pentti Riikonen, Tapio Salakoski, Mauno Vihinen:
Evaluation of Protein Hydropathy Scales. 245-251 - Christophe Nicolas Magnan, Cécile Capponi, François Denis:
A Protocol to Detect Local Affinities Involved in Proteins Distant Interactions. 252-257 - Frank DiMaio, Ameet Soni, George N. Phillips, Jude W. Shavlik:
Improved Methods for Template-Matching in Electron-Density Maps Using Spherical Harmonics. 258-265 - Yhi Shiau, Jia-Nan Wang, Yu-Feng Huang, Chien-Kang Huang:
Heuristic Strategy for Geometric Hashing Based Protein Structure Comparison of Ellipsoidal Representation. 266-274
Computational Systems Biology
- Doan Dai Duong, Patricia A. Evans:
A Haplotyping Algorithm for Non-recombinant Pedigree Data Containing Missing Members. 275-281 - Dumitru Brinza, Alexander Zelikovsky:
Risk Factor Searching Heuristics for SNP Case-Control Studies. 282-287 - Luca Bortolussi, Simone Fonda, Alberto Policriti:
Constraint-Based Simulation of Biological Systems Described by Molecular Interaction Maps. 288-293 - Yudong Sun, Steve McKeever, Kia Balali-Mood, Mark S. P. Sansom:
A Multiscale Model for Efficient Simulation of a Membrane Bound Viral Fusion Peptide. 294-301 - Jiaxing Xue, Jean Gao, Liping Tang:
Mathematical Modeling of Phagocyte Chemotaxis toward and Adherence to Biomaterial Implants. 302-307 - Samik Ghosh, Preetam Ghosh, Kalyan Basu, Sajal K. Das:
Modeling the Stochastic Dynamics of Gene Expression in Single Cells: A Birth and Death Markov Chain Analysis. 308-316
Microarray Design and Data Analysis
- Fatih Altiparmak, Selnur Erdal, Ozgur Ozturk, Hakan Ferhatosmanoglu:
A Multi-metric Similarity Based Analysis of Microarray Data. 317-324 - Brandon J. Smith, Bruce R. Southey, Sandra L. Rodriguez-Zas:
Smoothing Spline Mixed Effects Modeling of Multifactorial Gene Expression Profiles. 325-332
BioOntologies
- Sachin Mathur, Deendayal Dinakarpandian:
A New Metric to Measure Gene Product Similarity. 333-338 - Oliver Ruebenacker, Ion I. Moraru, James C. Schaff, Michael L. Blinov:
Kinetic Modeling Using BioPAX Ontology. 339-348
Gene Networks, Pathways, Networks, Systems Biology
- Leonardo Bobadilla, Fernando Niño, Edilberto Cepeda, Manuel A. Patarroyo:
A Novel Methodology for Characterizing and Predicting Protein Functional Sites. 349-354 - Valeria Fionda, Luigi Palopoli, Simona Panni, Simona E. Rombo:
GRAPPIN: Bipartite GRAph Based Protein-Protein Interaction Network Similarity Search. 355-361 - Younhee Ko, Chengxiang Zhai, Sandra L. Rodriguez-Zas:
Inference of Gene Pathways Using Gaussian Mixture Models. 362-367 - Xin Li, Zhu Zhang, Hsinchun Chen, Jiexun Li:
Graph Kernel-Based Learning for Gene Function Prediction from Gene Interaction Network. 368-373 - Fang Fang, Robert L. Grossman, Xiangjun Liu:
An Algorithm for Assigning Unique Keys to Metabolic Pathways. 374-382
Signal and Image Processing in BioMedicine
- Hara Stefanou, Thanasis Margaritis, Dimitris Kafetzopoulos, Konstantinos Marias, Panagiotis Tsakalides:
Microarray Image Denoising Using a Two-Stage Multiresolution Technique. 383-389 - Santa Di Cataldo, Elisa Ficarra, Enrico Macii:
Selection of Tumor Areas and Segmentation of Nuclear Membranes in Tissue Confocal Images: A Fully Automated Approach. 390-398
BioMedical Databases and Information Systems, BioMedical Information
- Chetan Mittal, Nevenka Dimitrova, Vijaykumar Channakeshava:
MDDM: A Resource for Differential Methylation in Cancer. 399-405 - James Zijun Wang, Zhidian Du, Philip S. Yu, Chin-Fu Chen:
An Efficient Online Tool to Search Top-N Genes with Similar Biological Functions in Gene Ontology Database. 406-411 - Fusheng Wang
, Cornelius Rabsch, Peiya Liu:
Using SVG to Model and Query Image Annotations and Their History. 412-422
Intelligent Biomedical Knowledge Discovery
- Thanh Phuong Nguyen, Tu Bao Ho:
A Semi-supervised Learning Approach to Disease Gene Prediction. 423-428 - Michele Berlingerio, Francesco Bonchi, Fosca Giannotti, Franco Turini:
Mining Clinical Data with a Temporal Dimension: A Case Study. 429-436 - Quan Wen, Jean Gao, Kate Luby-Phelps:
Multiple Interacting Subcellular Structure Tracking by Sequential Monte Carlo Method. 437-442
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