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ORCID1. BIRD 2007: Berlin, Germany
- Sepp Hochreiter, Roland Wagner:
Bioinformatics Research and Development, First International Conference, BIRD 2007, Berlin, Germany, March 12-14, 2007, Proceedings. Lecture Notes in Computer Science 4414, Springer 2007, ISBN 978-3-540-71232-9
Microarray and Systems Biology I (Networks)
- Nicole Radde, Lars Kaderali:
Bayesian Inference of Gene Regulatory Networks Using Gene Expression Time Series Data. 1-15 - Patrick E. Meyer, Kevin Kontos, Gianluca Bontempi
:
Biological Network Inference Using Redundancy Analysis. 16-27 - Judit Kumuthini, Lionel Jouffe, Conrad Bessant:
A Novel Graph Optimisation Algorithm for the Extraction of Gene Regulatory Networks from Temporal Microarray Data. 28-37
Microarray and Systems Biology II
- Matthias Scholz:
Analysing Periodic Phenomena by Circular PCA. 38-47 - Angelica Lindlöf, Marcus Bräutigam, Aakash Chawade, Björn Olsson, Olof Olsson:
Identification of Cold-Induced Genes in Cereal Crops and Arabidopsis Through Comparative Analysis of Multiple EST Sets. 48-65 - Jano I. van Hemert, Richard A. Baldock:
Mining Spatial Gene Expression Data for Association Rules. 66-76
Medical, SNPs, Genomics I
- Lars Kaderali:
Individualized Predictions of Survival Time Distributions from Gene Expression Data Using a Bayesian MCMC Approach. 77-89 - Arno Fritsch, Katja Ickstadt:
Comparing Logic Regression Based Methods for Identifying SNP Interactions. 90-103 - Evgeny Gladilin, Sandra Götze, Jose Mateos-Langerak, Roel van Driel, Karl Rohr, Roland Eils:
Stochastical Analysis of Finite Point Sampling of 3D Chromatin Fiber in Interphase Cell Nuclei. 104-118
Medical, SNPs, Genomics II
- Piyarat Nimmanpipug, Vannajan Sanghiran Lee, Jeerayut Chaijaruwanich, Sukon Prasitwattanaseree, Patrinee Traisathit:
Structural Screening of HIV-1 Protease/Inhibitor Docking by Non-parametric Binomial Distribution Test. 119-130 - Rafael Navajas-Pérez, Manuel Ruiz Rejón, Manuel A. Garrido-Ramos, José Luis Aznarte, Cristina Rubio-Escudero:
satDNA Analyzer 1.2 as a Valuable Computing Tool for Evolutionary Analysis of Satellite-DNA Families: Revisiting Y-Linked Satellite-DNA Sequences of Rumex (Polygonaceae). 131-139 - Jehan Zeb Shah, Naomie Salim:
A Soft Hierarchical Algorithm for the Clustering of Multiple Bioactive Chemical Compounds. 140-153
Systems Biology
- Da Jiang, Shuigeng Zhou, Jihong Guan:
A Novel Method for Flux Distribution Computation in Metabolic Networks. 154-167 - James Lu, Heinz W. Engl, Rainer Machné, Peter Schuster:
Inverse Bifurcation Analysis of a Model for the Mammalian G 1/ S Regulatory Module. 168-184 - Zelmina Lubovac, David Corne, Jonas Gamalielsson, Björn Olsson:
Weighted Cohesiveness for Identification of Functional Modules and Their Interconnectivity. 185-198 - Elena Tsiporkova, Veselka Boeva:
Modelling and Simulation of the Genetic Phenomena of Additivity and Dominance via Gene Networks of Parallel Aggregation Processes. 199-211
Sequence Analysis I (Coding)
- Qiwen Dong, Lei Lin, Xiaolong Wang:
Protein Remote Homology Detection Based on Binary Profiles. 212-223 - Rabie Saidi, Mondher Maddouri, Engelbert Mephu Nguifo:
Biological Sequences Encoding for Supervised Classification. 224-238 - Cinzia Pizzi, Pasi Rastas, Esko Ukkonen:
Fast Search Algorithms for Position Specific Scoring Matrices. 239-250
Sequence Analysis II
- Christelle Melo de Lima, Christian Gautier:
A Markovian Approach for the Segmentation of Chimpanzee Genome. 251-262 - Majid Beigi, Andreas Zell:
Synthetic Protein Sequence Oversampling Method for Classification and Remote Homology Detection in Imbalanced Protein Data. 263-277 - Yasubumi Sakakibara, Kiyoshi Asai, Kengo Sato:
Stem Kernels for RNA Sequence Analyses. 278-291 - Piero Fariselli, Daniele Molinini, Rita Casadio, Anders Krogh:
Prediction of Structurally-Determined Coiled-Coil Domains with Hidden Markov Models. 292-302
Proteomics I
- Susan Jones, Yoichi Mukarami:
Patch Prediction of Protein Interaction Sites: Validation of a Scoring Function for an Online Server. 303-313 - Shu-Yun Le, Jih-Hsiang Chen:
Statistical Inference on Distinct RNA Stem-Loops in Genomic Sequences. 314-327 - Xiang Chen, Robert F. Murphy:
Interpretation of Protein Subcellular Location Patterns in 3D Images Across Cell Types and Resolutions. 328-342
Proteomics II (Measurements)
- Ji Won Yoon, Simon J. Godsill, ChulHun Kang, Tae-Seong Kim:
Bayesian Inference for 2D Gel Electrophoresis Image Analysis. 343-356 - Simon W. Ginzinger, Thomas Gräupl, Volker Heun:
SimShiftDB: Chemical-Shift-Based Homology Modeling. 357-370 - Ralf Tautenhahn, Christoph Böttcher, Steffen Neumann:
Annotation of LC/ESI-MS Mass Signals. 371-380
Proteomics III (Structure)
- Kathleen Steinhöfel, Alexandros Skaliotis, Andreas Alexander Albrecht:
Stochastic Protein Folding Simulation in the d-Dimensional HP-Model. 381-394 - Chung-Tsai Su, Tong-Ming Hsu, Chien-Yu Chen, Yu-Yen Ou, Yen-Jen Oyang:
Enhancing Protein Disorder Detection by Refined Secondary Structure Prediction. 395-409 - Brijnesh J. Jain, Michael Lappe:
Joining Softassign and Dynamic Programming for the Contact Map Overlap Problem. 410-423
Databases, Web and Text Analysis
- Alexander Hinneburg, Andrea Porzel, Karina Wolfram:
An Evaluation of Text Retrieval Methods for Similarity Search of Multi-dimensional NMR-Spectra. 424-438 - Fabrice Camous, Stephen Blott, Alan F. Smeaton:
Ontology-Based MEDLINE Document Classification. 439-452 - Domenico Marra, Paolo Romano:
Integrating Mutations Data of the TP53 Human Gene in the Bioinformatics Network Environment. 453-463 - Mihail Halachev, Nematollaah Shiri, Anand Thamildurai:
Efficient and Scalable Indexing Techniques for Biological Sequence Data. 464-479
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