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ORCID9. CMSB 2011: Paris, France
- François Fages:
Computational Methods in Systems Biology, 9th International Conference, CMSB 2011, Paris, France, September 21-23, 2011. Proceedings. ACM 2011, ISBN 978-1-4503-0817-5 - Thomas A. Henzinger, Maria Mateescu:
Propagation models for computing biochemical reaction networks. 1-3 - Pedro Mendes, Natalie J. Stanford
, Kieran Smallbone:
Kinetic modelling of large-scale metabolic networks. 5-6 - Denis Thieffry:
Logical modelling of haematopoietic cell fate reprogramming. 7 - Eugen Czeizler, Vladimir Rogojin, Ion Petre:
The phosphorylation of the heat shock factor as a modulator for the heat shock response. 9-23 - Jimmy Omony, Astrid R. Mach-Aigner, Leo H. de Graaff, Gerrit van Straten, Anton J. B. van Boxtel:
Evaluation of design strategies for time course experiments in genetic networks: the XlnR regulon in Aspergillus niger. 25-33
Stochastic models
- Sucheendra K. Palaniappan, S. Akshay, Blaise Genest, P. S. Thiagarajan:
A hybrid factored frontier algorithm for dynamic Bayesian network models of biopathways. 35-44 - Alessio Angius, András Horváth:
Analysis of stochastic reaction networks with Markov reward models. 45-54 - Jacques Demongeot, Sylvain Sené:
The singular power of the environment on stochastic nonlinear threshold Boolean automata networks. 55-64
High performance computing
- Diego Darriba, Guillermo L. Taboada, Ramon Doallo, David Posada:
HPC selection of models of DNA substitution. 65-72 - Martin Falk, Michael Ott, Thomas Ertl, Michael Klann, Heinz Koeppl:
Parallelized agent-based simulation on CPU and graphics hardware for spatial and stochastic models in biology. 73-82 - Hiroyuki Kuwahara, Xin Gao:
An efficient parallel stochastic simulation method for analysis of nonviral gene delivery systems. 83-93 - Irene Sánchez-Linares, Horacio Emilio Pérez Sánchez, Ginés D. Guerrero, José M. Cecilia, José M. García:
Accelerating multiple target drug screening on GPUs. 95-102
Simulation
- Ezio Bartocci, Elizabeth Cherry, James Glimm, Radu Grosu, Scott A. Smolka, Flavio H. Fenton:
Toward real-time simulation of cardiac dynamics. 103-112 - Xuefeng Gao, Sabin Tabirca, Mark Tangney:
Computer simulation of Salmonella typhimurium accumulation within tumors. 113-119
Discrete models
- Hannes Klarner, Heike Siebert, Alexander Bockmayr:
Parameter inference for asynchronous logical networks using discrete time series. 121-130 - Luca Cardelli, Cosimo Laneve:
Reversible structures. 131-140
Spatial models
- Mark Burkitt, Dawn C. Walker, Daniela M. Romano, Alireza Fazeli:
Modelling sperm behaviour in a 3D environment. 141-149 - Abhishek Murthy, Ezio Bartocci, Flavio H. Fenton, James Glimm, Richard A. Gray, Scott A. Smolka, Radu Grosu:
Curvature analysis of cardiac excitation wavefronts. 151-160 - Arne T. Bittig, Fiete Haack, Carsten Maus, Adelinde M. Uhrmacher:
Adapting rule-based model descriptions for simulating in continuous and hybrid space. 161-170 - Nicolas Oury, Gordon D. Plotkin:
Coloured stochastic multilevel multiset rewriting. 171-181
Multiscale models
- Nicola Paoletti, Pietro Liò, Emanuela Merelli, Marco Viceconti:
Osteoporosis: a multiscale modeling viewpoint. 183-193 - Andrea Degasperi, Muffy Calder:
Multi-scale modelling of biological systems in process algebra with multi-way synchronisation. 195-208 - Qian Gao, Fei Liu, David R. Gilbert, Monika Heiner, David Tree:
A multiscale approach to modelling planar cell polarity in Drosophila wing using hierarchically coloured Petri nets. 209-218
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