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ORCIDPRIB 2013: Nice, France
- Alioune Ngom, Enrico Formenti, Jin-Kao Hao, Xing-Ming Zhao, Twan van Laarhoven:
Pattern Recognition in Bioinformatics - 8th IAPR International Conference, PRIB 2013, Nice, France, June 17-20, 2013. Proceedings. Lecture Notes in Computer Science 7986, Springer 2013, ISBN 978-3-642-39158-3
Bio-molecular Networks and Pathway Analysis
- Mohammad Shamsur Rahman, Alioune Ngom:
A Fast Agglomerative Community Detection Method for Protein Complex Discovery in Protein Interaction Networks. 1-12 - D. A. K. Maduranga, Jie Zheng, Piyushkumar A. Mundra, Jagath C. Rajapakse:
Inferring Gene Regulatory Networks from Time-Series Expressions Using Random Forests Ensemble. 13-22 - Wynand Winterbach, Piet Van Mieghem, Marcel J. T. Reinders, Huijuan Wang, Dick de Ridder:
Local Topological Signatures for Network-Based Prediction of Biological Function. 23-34 - Jeroen de Ridder
, Jaap Kool, Anthony Uren, Jan Bot, Johann de Jong, Alistair G. Rust, Anton Berns, Maarten van Lohuizen, David J. Adams, Lodewyk F. A. Wessels, Marcel J. T. Reinders:
Mutational Genomics for Cancer Pathway Discovery. 35-46 - Michael F. Ochs, Jason E. Farrar, Michael Considine, Yingying Wei, Soheil Meschinchi, Robert J. Arceci:
Outlier Gene Set Analysis Combined with Top Scoring Pair Provides Robust Biomarkers of Pathway Activity. 47-58 - Clara Pizzuti, Simona E. Rombo:
Restricted Neighborhood Search Clustering Revisited: An Evolutionary Computation Perspective. 59-68
Learning, Classification, and Clustering
- Elena Marchiori:
Class Dependent Feature Weighting and K-Nearest Neighbor Classification. 69-78 - Piyushkumar A. Mundra, Jagath C. Rajapakse, D. A. K. Maduranga:
Simultaneous Sample and Gene Selection Using T-score and Approximate Support Vectors. 79-90 - Yifeng Li, Alioune Ngom:
Versatile Sparse Matrix Factorization and Its Applications in High-Dimensional Biological Data Analysis. 91-101
Data Mining and Knowledge Discovery
- Bay-Yuan Hsu, Thomas K. F. Wong, Wing-Kai Hon, Xinyi Liu, Tak Wah Lam, Siu-Ming Yiu:
A Local Structural Prediction Algorithm for RNA Triple Helix Structure. 102-113 - Trent Higgs, Lukas Folkman, Bela Stantic:
Combining Protein Fragment Feature-Based Resampling and Local Optimisation. 114-125 - Alexander V. Spirov, Carlos E. Vanario-Alonso, Ekaterina N. Spirova, David M. Holloway:
Experimental Determination of Intrinsic Drosophila Embryo Coordinates by Evolutionary Computation. 126-137 - Iman Rezaeian, Yifeng Li, Martin Crozier, Eran Andrechek, Alioune Ngom, Luis Rueda, Lisa A. Porter:
Identifying Informative Genes for Prediction of Breast Cancer Subtypes. 138-148 - Yan-Fen Dai, Yin-Ying Wang, Xing-Ming Zhao:
Predicting Therapeutic Targets with Integration of Heterogeneous Data Sources. 149-158 - Alexey A. Gritsenko, Marcel J. T. Reinders, Dick de Ridder:
Using Predictive Models to Engineer Biology: A Case Study in Codon Optimization. 159-171
Protein: Structure, Function, and Interaction
- Wei Xiong, Luyu Xie, Jihong Guan, Shuigeng Zhou:
Active Learning for Protein Function Prediction in Protein-Protein Interaction Networks. 172-183 - Thies Gehrmann, Marco Loog, Marcel J. T. Reinders, Dick de Ridder:
Conditional Random Fields for Protein Function Prediction. 184-195 - Abdollah Dehzangi, Kuldip K. Paliwal, James G. Lyons, Alok Sharma, Abdul Sattar:
Enhancing Protein Fold Prediction Accuracy Using Evolutionary and Structural Features. 196-207 - Abdollah Dehzangi, Kuldip K. Paliwal, James G. Lyons, Alok Sharma, Abdul Sattar:
Exploring Potential Discriminatory Information Embedded in PSSM to Enhance Protein Structural Class Prediction Accuracy. 208-219 - David K. Y. Chiu, Ramya Manjunath:
Inferring the Association Network from p53 Sequence Alignment Using Granular Evaluations. 220-230 - Chun-Wei Tung:
Prediction of Non-genotoxic Hepatocarcinogenicity Using Chemical-Protein Interactions. 231-241
Motifs, Sites, and Sequences Analysis
- Sudipta Pathak, Vamsi Krishna Kundeti, Martin R. Schiller, Sanguthevar Rajasekaran:
A Structure Based Algorithm for Improving Motifs Prediction. 242-252 - Ruben Acuña, Zoé Lacroix, Jacques Chomilier:
A Workflow for the Prediction of the Effects of Residue Substitution on Protein Stability. 253-264 - Raunaq Malhotra, Shruthi Prabhakara, Mary Poss, Raj Acharya:
Estimating Viral Haplotypes in a Population Using k-mer Counting. 265-276 - Matteo Comin, Morris Antonello:
Fast Computation of Entropic Profiles for the Detection of Conservation in Genomes. 277-288
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