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ORCIDComputer Physics Communications, Volume 183
Volume 183, Number 1, January 2012
- Matthew G. Reuter
, Judith C. Hill, Robert J. Harrison:
Solving PDEs in irregular geometries with multiresolution methods I: Embedded Dirichlet boundary conditions. 1-7 - Nobuya Maeshima, Ken-ichi Hino:
Parallelization of the R-matrix propagation method for the study of intense-laser-driven semiconductor superlattices. 8-14 - Zhijie Xu, Hai Huang, Xiaoyi Li, Paul Meakin:
Phase field and level set methods for modeling solute precipitation and/or dissolution. 15-19 - S. Kaprzyk:
An algebraic formulation of the simplex linear method for multiple integrals over the d-dimensional domain. 20-25 - Filip A. Sala:
Mobile phone as a platform for numerical simulation. 26-29 - Chuan-Hui Zhang, Qiong Ran, Jiang Shen:
Structural stability of silicene-like nanotubes. 30-33 - Yoshifumi Nakamura, Ken-Ichi Ishikawa, Yoshinobu Kuramashi, Tetsuya Sakurai, Hiroto Tadano:
Modified block BiCGSTAB for lattice QCD. 34-37 - Nicolas Bigaouette, Edward Ackad, Lora Ramunno:
Nonlinear grid mapping applied to an FDTD-based, multi-center 3D Schrödinger equation solver. 38-45 - Jiantong Weng, Tomoyoshi Shimobaba, Minoru Oikawa, Nobuyuki Masuda, Tomoyoshi Ito:
Fast recurrence relation for computer-generated-hologram. 46-49 - Tao Jiang, Jie Ouyang, Jin-Lian Ren, Bin-Xin Yang, Xiaoyang Xu:
A mixed corrected symmetric SPH (MC-SSPH) method for computational dynamic problems. 50-62 - Liviu Gr. Ixaru:
Runge-Kutta method with equation dependent coefficients. 63-69 - Jacob Waltz, T. A. Gianakon:
A comparison of mix models for the Rayleigh-Taylor instability. 70-79 - Roberto Barrio, Marcos Rodríguez, Fernando Blesa:
Computer-assisted proof of skeletons of periodic orbits. 80-85 - Zhaoxia Chen, Xiong You, Wei Shi, Zhongli Liu:
Symmetric and symplectic ERKN methods for oscillatory Hamiltonian systems. 86-98 - Mario S. Reis:
Models for one-dimensional molecular magnets. 99-105
- Yezhi Lin, Yinping Liu, Zhibin Li:
Symbolic computation of analytic approximate solutions for nonlinear differential equations with initial conditions. 106-117 - Jaroslaw Adam Miszczak:
Generating and using truly random quantum states in Mathematica. 118-124 - Valerio Novaresio, María García-Camprubí, Salvador Izquierdo, Pietro Asinari, Norberto Fueyo:
An open-source library for the numerical modeling of mass-transfer in solid oxide fuel cells. 125-146 - Guillem Carles, Carme Ferran, Artur Carnicer, Salvador Bosch:
Design and implementation of a scene-dependent dynamically selfadaptable wavefront coding imaging system. 147-154 - Beat Röthlisberger, Jörg Lehmann, Daniel Loss:
libCreme: An optimization library for evaluating convex-roof entanglement measures. 155-165 - Nicolas Schunck, J. Dobaczewski, J. McDonnell, Wojciech Satula, J. A. Sheikh, Andrzej Staszczak, M. V. Stoitsov, P. Toivanen:
Solution of the Skyrme-Hartree-Fock-Bogolyubov equations in the Cartesian deformed harmonic-oscillator basis.: (VII) hfodd (v2.49t): A new version of the program. 166-192 - N. D. Gagunashvili:
CHICOM: A code of tests for comparing unweighted and weighted histograms and two weighted histograms. 193-196 - Andre E. Botha:
General R-matrix approach for integrating the multiband k.p equation in layered semiconductor structures. 197-202 - Xevi Biarnés, Fabio Pietrucci, Fabrizio Marinelli, Alessandro Laio:
METAGUI. A VMD interface for analyzing metadynamics and molecular dynamics simulations. 203-211
Volume 183, Number 2, February 2012
- Andrzej Daniluk:
Visual modeling for scientific software architecture design. A practical approach. 213-230 - Carlos Alberto Jara, Francisco Esquembre, Wolfgang Christian, Francisco A. Candelas Herías, Fernando Torres Medina, Sebastián Dormido:
A new 3D visualization Java framework based on physics principles. 231-244 - Luciano M. de Andrade Filho, José Manoel de Seixas, Roberto Agostino Vitillo, Brian Thomas Martin:
Three-dimensional event visualization for the ATLAS calorimeter. 245-250 - K. Roeller, S. Herminghaus, Axel Hager-Fingerle:
Sinusoidal shaking in event-driven simulations. 251-260 - Yubao Zhen, Chengbiao Chu:
A deformation-fluctuation hybrid method for fast evaluation of elastic constants with many-body potentials. 261-265 - Sergio Andres Galindo-Torres, D. M. Pedroso, D. J. Williams, Ling Li:
Breaking processes in three-dimensional bonded granular materials with general shapes. 266-277 - Yong Gan, J. K. Chen:
A hybrid method for integrated atomistic-continuum simulation of ultrashort-pulsed laser interaction with semiconductors. 278-284 - Farvah Mahmoudi, Sven Heinemeyer, Alexandre Arbey, Aoife Bharucha, T. Goto, Thomas Hahn, U. Haisch, Sabine Kraml, Margarete Mühlleitner, J. Reuter, Peter Skands, Pietro Slavich:
Flavour Les Houches Accord: Interfacing flavour related codes. 285-298 - Georg Bergner, Jaïr Wuilloud:
Acceleration of the Arnoldi method and real eigenvalues of the non-Hermitian Wilson-Dirac operator. 299-304 - Ralf Kleiber, Roman Hatzky:
A partly matrix-free solver for the gyrokinetic field equation in three-dimensional geometry. 305-308 - Xuesong Li, Lin Ma:
Minimizing binary functions with simulated annealing algorithm with applications to binary tomography. 309-315 - Mingzhe Liu, Xianguo Tuo, Zhe Li, Jianbo Yang, Yang Gao:
Asymmetric exclusion process for modeling of information flow. 316-319 - Aleksander A. Stanislavsky, Karina Weron:
Numerical scheme for calculating of the fractional two-power relaxation laws in time-domain of measurements. 320-323 - P. M. C. Rourke, S. R. Julian:
Numerical extraction of de Haas-van Alphen frequencies from calculated band energies. 324-332
- Ben-Hao Sa, Dai-Mei Zhou, Yu-Liang Yan, Xiao-Mei Li, Sheng-Qin Feng, Bao-Guo Dong, Xu Cai:
PACIAE 2.0: An updated parton and hadron cascade model (program) for the relativistic nuclear collisions. 333-346 - S. Kaprzyk:
An algebraic formulation and implementation of the tetrahedron linear method for the Brillouin zone integration of spectral functions. 347-362 - Teemu Hynninen, Cristiano L. Dias, A. Mkrtchyan, Vili Heinonen, Mikko Karttunen, Adam S. Foster, Tapio Ala-Nissila:
A molecular dynamics implementation of the 3D Mercedes-Benz water model. 363-369 - Ulrich Hohenester, Andreas Trügler:
MNPBEM - A Matlab toolbox for the simulation of plasmonic nanoparticles. 370-381 - Joseph E. Curtis, Sindhu Raghunandan, Hirsh Nanda, Susan Krueger:
SASSIE: A program to study intrinsically disordered biological molecules and macromolecular ensembles using experimental scattering restraints. 382-389 - Dennis M. Elking, Lalith E. Perera, Lee G. Pedersen:
HPAM: Hirshfeld partitioned atomic multipoles. 390-397 - Matej Batic, Maria Grazia Pia, Sam J. Cipolla:
ISICSoo: A class for the calculation of ionization cross sections from ECPSSR and PWBA theory. 398-404 - Christian Clason, Gregory von Winckel:
A general spectral method for the numerical simulation of one-dimensional interacting fermions. 405-417 - N. D. Gagunashvili:
CHIWEI: A code of goodness of fit tests for weighted and unweighted histograms. 418-421 - Dominik Stöckinger, Philipp Varso:
FeynArts model file for MSSM transition counterterms from DREG to DRED. 422-430 - Sami Heinäsmäki:
IONIS: Approximate atomic photoionization intensities. 431-437
- Paolo Barletta:
COOL: A code for Dynamic Monte Carlo Simulation of molecular dynamics. 438-439 - Kwang Jin Oh, Ji Hoon Kang, Hun Joo Myung:
mm_par2.0: An object-oriented molecular dynamics simulation program parallelized using a hierarchical scheme with MPI and OPENMP. 440-441 - Xian-You Wang, Xing-Gang Wu:
A trick to improve the efficiency of generating unweighted Bc events from BCVEGPY. 442-445 - Min Hyung Cho, Wei Cai:
Revision of wFMM - A Wideband Fast Multipole Method for the two-dimensional complex Helmholtz equation. 446-447
Volume 183, Number 3, March 2012
- W. Michael Brown, Axel Kohlmeyer, Steven J. Plimpton, Arnold N. Tharrington:
Implementing molecular dynamics on hybrid high performance computers - Particle-particle particle-mesh. 449-459 - Thomas Hahn:
The high-energy physicistʼs guide to MathLink. 460-469 - Athinoula Kosti, Zacharias A. Anastassi, Tom E. Simos:
An optimized explicit Runge-Kutta-Nyström method for the numerical solution of orbital and related periodical initial value problems. 470-479 - Camilo Espejo, Tonatiuh Rangel, Yann Pouillon, Aldo H. Romero, Xavier Gonze:
Wannier functions approach to van der Waals interactions in ABINIT. 480-485 - Manamohan Prusty, Jia Ning Leaw, Shan Shang Chong, Siew Ann Cheong:
Stochastic boundary conditions for grand-canonical-like molecular dynamics simulations of open systems. 486-496 - Grady Schofield, James R. Chelikowsky, Yousef Saad:
A spectrum slicing method for the Kohn-Sham problem. 497-505 - Ulrich David Jentschura, Erik Lötstedt:
Numerical calculation of Bessel, Hankel and Airy functions. 506-519 - Alan Gray, Iain Bethune, R. D. Kenway, Lorna Smith, Martyn F. Guest, Christine A. Kitchen, Paul Calleja, A. Korzynski, S. Rankin, Mike Ashworth, A. Porter, Ilian T. Todorov, M. Plummer, E. Jones, L. Steenman-Clark, B. Ralston, Charles A. Laughton:
Mapping application performance to HPC architecture. 520-529 - A. Kopp, I. Büsching, R. D. Strauss, M. S. Potgieter:
A stochastic differential equation code for multidimensional Fokker-Planck type problems. 530-542 - S. Ihnatsenka:
Computation of electron quantum transport in graphene nanoribbons using GPU. 543-546 - Qiao-Hong Sui, Zhong-Jun Ding, Rui Jiang, Wei Huang, Duo Sun, Bing-Hong Wang:
Slow-to-start effect in two-dimensional traffic flow. 547-551 - Shu-Sen Xie, Su-Cheol Yi, Tae In Kwon:
Fourth-order compact difference and alternating direction implicit schemes for telegraph equations. 552-569 - Andrei Bourchtein, Ludmila Bourchtein:
A semi-implicit time-splitting scheme for a regional nonhydrostatic atmospheric model. 570-587 - Chunye Gong, Jie Liu, Haowei Huang, Zhenghu Gong:
Particle transport with unstructured grid on GPU. 588-593 - B. Roostaei, Walter C. Ermler:
Electric dipole transition moments and permanent dipole moments for spin-orbit configuration interaction wave functions. 594-599 - Ram Jiwari, Sapna Pandit, R. C. Mittal:
Numerical simulation of two-dimensional sine-Gordon solitons by differential quadrature method. 600-616 - Jan L. Cieslinski, Boguslaw Ratkiewicz:
Discrete gradient algorithms of high order for one-dimensional systems. 617-627 - Lorenzo Pardini, Valerio Bellini, Franca Manghi, Claudia Ambrosch-Draxl:
First-principles calculation of X-ray dichroic spectra within the full-potential linearized augmented planewave method: An implementation into the Wien2k code. 628-636
- Rafael Ramis, K. Eidmann, J. Meyer-ter-Vehn, S. Hüller:
MULTI-fs - A computer code for laser-plasma interaction in the femtosecond regime. 637-655 - Aldée Charbonnier, Céline Combet, David Maurin:
clumpy: A code for γ-ray signals from dark matter structures. 656-668 - I. O. Bespamyatnov, W. L. Rowan, K. T. Liao:
ALCBEAM - Neutral beam formation and propagation code for beam-based plasma diagnostics. 669-676 - Gundra Kondayya, Alok Shukla:
A Fortran 90 Hartree-Fock program for one-dimensional periodic π-conjugated systems using Pariser-Parr-Pople model. 677-689 - David C. Lonie, Eva Zurek:
Identifying duplicate crystal structures: XtalComp, an open-source solution. 690-697 - Timothy C. Petersen, Simon P. Ringer:
Local electron tomography using angular variations of surface tangents: Stomo version 2. 698-704 - A. Babaev, Yu. L. Pivovarov:
Resonant coherent excitation of hydrogen-like ions planar channeled in a crystal; Transition into the first excited state. 705-710 - Dean Lambert, Alasdair C. Hamilton, George Constable, Harsh Snehanshu, Sharvil Talati, Johannes Courtial:
TIM, a ray-tracing program for METATOY research and its dissemination. 711-732 - A. V. Nikitin:
An efficient code for calculation of the 6C, 9C and 12C symbols for C3v, Td, and Oh point groups. 733-736 - Bruno Juliá-Díaz, Tobias Graß:
Strongdeco: Expansion of analytical, strongly correlated quantum states into a many-body basis. 737-745 - Mikolaj Chojnacki, Adam Kisiel, Wojciech Florkowski, Wojciech Broniowski:
THERMINATOR 2: THERMal heavy IoN generATOR 2. 746-773 - Debottam Das, Ulrich Ellwanger, Ana M. Teixeira:
NMSDECAY: A Fortran code for supersymmetric particle decays in the Next-to-Minimal Supersymmetric Standard Model. 774-779 - Thomas Fischbacher:
Numerical tools to validate stationary points of SO(8)-gauged N=8D=4 supergravity. 780-784 - Benjamin C. Allanach, C. H. Kom, Marja Hanussek:
Computation of neutrino masses in R-parity violating supersymmetry: SOFTSUSY3.2. 785-793 - Amparo Gil, Javier Segura, Nico M. Temme:
An improved algorithm and a Fortran 90 module for computing the conical function fm-1/2+iτ(x). 794-799 - Tomasz Dziubak, Jacek Matulewski:
An object-oriented implementation of a solver of the time-dependent Schrödinger equation using the CUDA technology. 800-812 - Stefan Weinzierl:
The SISCone jet algorithm optimised for low particle multiplicities. 813-820 - Nadia M. Davidson, G. Nanava, Tomasz Przedzinski, Elzbieta Richter-Was, Zbigniew Was:
Universal interface of TAUOLA: Technical and physics documentation. 821-843
- Evgeny Z. Liverts, Nir Barnea:
S-states of helium-like ions. 844-845 - Daniel Maître:
Extension of HPL to complex arguments. 846
Volume 183, Number 4, April 2012
- Juraci P. Reis, Artur F. Menezes, Edmilson M. Souza, Alessandro Facure, Jose A. C. C. Medeiros, Ademir X. Silva:
Dose optimization in 125I permanent prostate seed implants using the Monte Carlo method. 847-852 - Claudio Bonati, G. Cossu, Massimo D'Elia, Pietro Incardona:
QCD simulations with staggered fermions on GPUs. 853-863 - Francisco de la Hoz, Fernando Vadillo:
Numerical simulation of the N-dimensional sine-Gordon equation via operational matrices. 864-879 - Mathias Winkel, Robert Speck, Helge Hübner, Lukas Arnold, Rolf Krause, Paul Gibbon:
A massively parallel, multi-disciplinary Barnes-Hut tree code for extreme-scale N-body simulations. 880-889 - Nathan Schmid, Clara D. Christ, Markus Christen, Andreas P. Eichenberger, Wilfred F. van Gunsteren:
Architecture, implementation and parallelisation of the GROMOS software for biomolecular simulation. 890-903 - Cristóbal Bertoglio, Boris N. Khoromskij:
Low-rank quadrature-based tensor approximation of the Galerkin projected Newton/Yukawa kernels. 904-912 - Feng-Gong Lang, Xiao-Ping Xu:
Quintic B-spline collocation method for second order mixed boundary value problem. 913-921 - F. Merz, Christoph Kowitz, Eloy Romero, José E. Román, Frank Jenko:
Multi-dimensional gyrokinetic parameter studies based on eigenvalue computations. 922-930 - Vitaliy Ogarko, Stefan Luding:
A fast multilevel algorithm for contact detection of arbitrarily polydisperse objects. 931-936 - Sergei S. Kucherenko, Stefano Tarantola, Paola Annoni:
Estimation of global sensitivity indices for models with dependent variables. 937-946 - J. Seebacher, Alexander Kendl:
Towards a unified linear kinetic transport model with the trace ion module for EIRENE. 947-959 - Andy Buckley, A. Shilton, M. J. White:
Fast supersymmetry phenomenology at the Large Hadron Collider using machine learning techniques. 960-970 - M. Fitzgerald, J. Khachan:
A 2-D PIC/MC/Vlasov method for electrostatic fusion discharges. 971-979 - Eiji Tsuchida, Yoong-Kee Choe:
Iterative diagonalization of symmetric matrices in mixed precision and its application to electronic structure calculations. 980-985 - Christian Ringl, Herbert M. Urbassek:
A LAMMPS implementation of granular mechanics: Inclusion of adhesive and microscopic friction forces. 986-992 - C. A. Duarte:
Compact expressions for the magnetoresistance and the electron/hole density of states under the application of magnetic fields. 993-997 - Yueh-Cheng Kuo, Shih-Feng Shieh, Weichung Wang:
Rotational quotient procedure: A tracking control continuation method for PDEs on radially symmetric domains. 998-1001
- M. Hirai, S. Kumano:
Numerical solution of Q2 evolution equations for fragmentation functions. 1002-1013 - Shigeru Odaka, Yoshimasa Kurihara:
GR@PPA 2.8: Initial-state jet matching for weak-boson production processes at hadron collisions. 1014-1028 - R. J. Casperson:
IBAR: Interacting boson model calculations for large system sizes. 1029-1035 - Michael Kachelrieß, Sergei Stanislavovich Ostapchenko, R. Tomàs:
ELMAG: A Monte Carlo simulation of electromagnetic cascades on the extragalactic background light and in magnetic fields. 1036-1043 - K. T. Vu, G. F. Jefferson, J. Carminati:
Finding higher symmetries of differential equations using the MAPLE package DESOLVII. 1044-1054 - Ioan Valeriu Grossu, Calin Besliu, Alexandru Jipa, Emil Stan, Tiberiu Esanu, D. Felea, Cristian C. Bordeianu:
Code C# for chaos analysis of relativistic many-body systems with reactions. 1055-1059
- Tobias Huber, Daniel Maître:
HypExp 2, expanding hypergeometric functions about half-integer parameters. 1060
Volume 183, Number 5, May 2012
- Stefano Tarantola, William Becker, Dirk Zeitz:
A comparison of two sampling methods for global sensitivity analysis. 1061-1072 - Omar Awile, Ferit Büyükkeçeci, Sylvain Reboux, Ivo F. Sbalzarini:
Fast neighbor lists for adaptive-resolution particle simulations. 1073-1081 - Yiqiang Xu, Luming Zhang:
Alternating direction implicit method for solving two-dimensional cubic nonlinear Schrödinger equation. 1082-1093 - Takayuki Umeda, Yasuhiro Nariyuki, Daichi Kariya:
A non-oscillatory and conservative semi-Lagrangian scheme with fourth-degree polynomial interpolation for solving the Vlasov equation. 1094-1100 - Omar Ramadan:
Unified matrix-exponential FDTD formulations for modeling electrically and magnetically dispersive materials. 1101-1106 - Andreas Bierwage, C. Di Troia, Sergio Briguglio, Gregorio Vlad:
Orbit-based representation of equilibrium distribution functions for low-noise initialization of kinetic simulations of toroidal plasmas. 1107-1123
- Tomoyoshi Shimobaba, Jiantong Weng, Takahiro Sakurai, Naohisa Okada, Takashi Nishitsuji, Naoki Takada, Atsushi Shiraki, Nobuyuki Masuda, Tomoyoshi Ito:
Computational wave optics library for C++: CWO++ library. 1124-1138 - Constantinos Voglis, Konstantinos E. Parsopoulos, Dimitris G. Papageorgiou, Isaac E. Lagaris, Michael N. Vrahatis:
MEMPSODE: A global optimization software based on hybridization of population-based algorithms and local searches. 1139-1154
Volume 183, Number 6, June 2012
- Yukihiro Komura, Yutaka Okabe:
GPU-based Swendsen-Wang multi-cluster algorithm for the simulation of two-dimensional classical spin systems. 1155-1161 - Wanjie Xiong, Fan Zhong, Shuangli Fan:
Positive specific-heat critical exponent of a three-dimensional three-state random-bond Potts model. 1162-1171 - Fengshun Lu, Junqiang Song, Fukang Yin, Xiaoqian Zhu:
Performance evaluation of hybrid programming patterns for large CPU/GPU heterogeneous clusters. 1172-1181 - Davide Melazzi, Davide Curreli, Marco Manente, Johan A. Carlsson, Daniele Pavarin:
SPIREs: A Finite-Difference Frequency-Domain electromagnetic solver for inhomogeneous magnetized plasma cylinders. 1182-1191 - Xingang Ren, Zhixiang Huang, Xianliang Wu, Silong Lu, Hui Wang, Lei Wu, Shen Li:
High-order unified symplectic FDTD scheme for the metamaterials. 1192-1200 - Céline Degrande, Claude Duhr, Benjamin Fuks, David Grellscheid, Olivier Mattelaer, Thomas Reiter:
UFO - The Universal FeynRules Output. 1201-1214 - Constantia Alexandrou, K. Hadjiyiannakou, G. Koutsou, Alan O'Cais, Alexei Strelchenko:
Evaluation of fermion loops applied to the calculation of the η mass and the nucleon scalar and electromagnetic form factors. 1215-1224 - Kun-Mo Lin, Chieh-Tsan Hung, Feng-Nan Hwang, Matthew R. Smith, Y.-W. Yang, Jong-Shinn Wu:
Development of a parallel semi-implicit two-dimensional plasma fluid modeling code using finite-volume method. 1225-1236 - Janis Timoshenko, Alexei Kuzmin, Juris Purans:
Reverse Monte Carlo modeling of thermal disorder in crystalline materials from EXAFS spectra. 1237-1245 - Michaël Magoga, Fabien Archambault, Jorge I. Cerdá:
Nt_STM: A step forward in Scanning Tunneling Microscopy (STM) simulations. 1246-1249 - Wei Shi, Xinyuan Wu:
On symplectic and symmetric ARKN methods. 1250-1258 - Reza Mokhtari, Majid Mohseni:
A meshless method for solving mKdV equation. 1259-1268
- Jack Deslippe, Georgy Samsonidze, David A. Strubbe, Manish Jain, Marvin L. Cohen, Steven G. Louie:
BerkeleyGW: A massively parallel computer package for the calculation of the quasiparticle and optical properties of materials and nanostructures. 1269-1289 - Markus Q. Huber, Jens Braun:
Algorithmic derivation of functional renormalization group equations and Dyson-Schwinger equations. 1290-1320 - Albert Deuzeman, Siebren Reker, Carsten Urbach:
Lemon: An MPI parallel I/O library for data encapsulation using LIME. 1321-1335 - Simon Catterall, Anosh Joseph:
An object oriented code for simulating supersymmetric Yang-Mills theories. 1336-1353 - Pawel Jakubczyk, Andrzej Wal, Dorota Jakubczyk, Tadeusz Lulek:
Computer implementation of the Kerov-Kirillov-Reshetikhin algorithm. 1354-1362 - H. P. Nilles, S. Ramos-Sánchez, Patrick K. S. Vaudrevange, A. Wingerter:
The orbifolder: A tool to study the low-energy effective theory of heterotic orbifolds. 1363-1380 - András Vukics:
C++QEDv2: The multi-array concept and compile-time algorithms in the definition of composite quantum systems. 1381-1396 - Algirdas Deveikis:
A computer program for two-particle intrinsic coefficients of fractional parentage. 1397-1401
Volume 183, Number 7, July 2012
- François Fillion-Gourdeau, Emmanuel Lorin, André D. Bandrauk:
Numerical solution of the time-dependent Dirac equation in coordinate space without fermion-doubling. 1403-1415 - Massimo Bernaschi, Massimiliano Fatica, Giorgio Parisi, Leonardo Parisi:
Multi-GPU codes for spin systems simulations. 1416-1421 - Maxwell Hutchinson, Michael Widom:
VASP on a GPU: Application to exact-exchange calculations of the stability of elemental boron. 1422-1426 - Haokai Lu, Peng Li:
Stochastic projective methods for simulating stiff chemical reacting systems. 1427-1442 - Andreas Mayer, Hanna Salopaasi, Katariina Pussi, Renee D. Diehl:
A novel method for the extraction of intensity-energy spectra from low-energy electron diffraction patterns. 1443-1447
- Igor Akushevich, O. F. Filoti, Alexander Ilyichev, N. Shumeiko:
Monte Carlo generator ELRADGEN 2.0 for simulation of radiative events in elastic ep-scattering of polarized particles. 1448-1467 - Jean-Marc Cherfils, Gregory Pinon, Elie Rivoalen:
JOSEPHINE: A parallel SPH code for free-surface flows. 1468-1480 - Birgit Hischenhuber, Florian Frommlet, Wolfgang Schreiner, Bernhard Knapp:
MH2c: Characterization of major histocompatibility α-helices - an information criterion approach. 1481-1490 - Benjamin Lindner, Jeremy C. Smith:
Sassena - X-ray and neutron scattering calculated from molecular dynamics trajectories using massively parallel computers. 1491-1501 - Christoph Schimeczek, Dirk Engel, Günter Wunner:
A highly optimized code for calculating atomic data at neutron star magnetic field strengths using a doubly self-consistent Hartree-Fock-Roothaan method. 1502-1510 - Luiz C. Mostaço-Guidolin, Rafael Bertolini Frigori, Leonid Ruchko, Ricardo M. O. Galvão:
SCTE: An open-source Perl framework for testing equipment control and data acquisition. 1511-1518 - Feng Feng:
A recursive method to calculate UV-divergent parts at one-loop level in dimensional regularization. 1519-1524 - Stephan Fritzsche:
The Ratip program for relativistic calculations of atomic transition, ionization and recombination properties. 1525-1559
- Daniel J. Sindhikara:
Modular reweighting software for statistical mechanical analysis of biased equilibrium data. 1560-1561
Volume 183, Number 8, August 2012
- Andrey Asadchev, Mark S. Gordon:
Mixed-precision evaluation of two-electron integrals by Rys quadrature. 1563-1567 - Junqi Yin, D. P. Landau:
Massively parallel Wang-Landau sampling on multiple GPUs. 1568-1573 - Su Do Yi, Beom Jun Kim:
Force correlations in molecular and stochastic dynamics. 1574-1577 - Ezequiel E. Ferrero, Juan Pablo De Francesco, Nicolás Wolovick, Sergio A. Cannas:
q-state Potts model metastability study using optimized GPU-based Monte Carlo algorithms. 1578-1587 - Yan Zhao, Xuesong Li, Lin Ma:
Multidimensional Monte Carlo model for two-photon laser-induced fluorescence and amplified spontaneous emission. 1588-1595 - Kun-Chang Tseng, Tien-Chuan Kuo, S. C. Lin, Cheng-Chin Su, Jong-Shinn Wu:
Simulations of subsonic vortex-shedding flow past a 2D vertical plate in the near-continuum regime by the parallelized DSMC code. 1596-1608 - Liquan Mei, Yaping Chen:
Numerical solutions of RLW equation using Galerkin method with extrapolation techniques. 1609-1616 - Rong Lin Jiang, Cheng Fang, Peng-Fei Chen:
A new MHD code with adaptive mesh refinement and parallelization for astrophysics. 1617-1633 - Adnane Hamiaz, Rudy Klein, Xavier Ferrières, Olivier Pascal, Jean-Pierre Boeuf, Jean-Rene Poirier:
Finite Volume Time Domain modelling of microwave breakdown and plasma formation in a metallic aperture. 1634-1640 - Andrea Colagrossi, B. Bouscasse, Matteo Antuono, Salvatore Marrone:
Particle packing algorithm for SPH schemes. 1641-1653 - Hanz Y. Ramírez, Alejandro Santana:
Two interacting electrons confined in a 3D parabolic cylindrically symmetric potential, in presence of axial magnetic field: A finite element approach. 1654-1657 - Xi Chen, Zejun Ding:
Solving extra-high-order Rubik's Cube problem by a dynamic simulated annealing. 1658-1663 - Nobuko Ohba, Shuji Ogata, Takahisa Kouno, Tomoyuki Tamura, Ryo Kobayashi:
Linear scaling algorithm of real-space density functional theory of electrons with correlated overlapping domains. 1664-1673 - Edoardo Di Napoli, Stefan Blügel, Paolo Bientinesi:
Correlations in sequences of generalized eigenproblems arising in Density Functional Theory. 1674-1682 - Georgios Kalantzis, Dimitrios Emfietzoglou, Panagiotis E. Hadjidoukas:
A unified spatio-temporal parallelization framework for accelerated Monte Carlo radiobiological modeling of electron tracks and subsequent radiation chemistry. 1683-1695 - Asimina Maniopoulou, Erlend R. M. Davidson, Ricardo Grau-Crespo, Aron Walsh, Ian J. Bush, C. Richard A. Catlow, Scott M. Woodley:
Introducing k-point parallelism into VASP. 1696-1701 - Bengisen Pekmen, Münevver Tezer-Sezgin:
Differential quadrature solution of nonlinear Klein-Gordon and sine-Gordon equations. 1702-1713 - Isaac Gabriel Salib, Shimon Haber:
Is the cutoff radius in DPD simulations with a fluid of constant density arbitrary? 1714-1718 - Jukka A. Heikkinen, Tuomas Korpilo, Salomon J. Janhunen, Timo P. Kiviniemi, Susan Leerink, Francisco Ogando:
Interpolation for momentum conservation in 3D toroidal gyrokinetic particle simulation of plasmas. 1719-1727 - Pengfei Wei, Zhenzhou Lu, Wenrui Hao, Jun Feng, Bintuan Wang:
Efficient sampling methods for global reliability sensitivity analysis. 1728-1743 - Gary Yuan, François Gygi:
A distributed approach to verification and validation of electronic structure simulation data using ESTEST. 1744-1748 - Gui-Yang Huang, Chong-Yu Wang, Jian-Tao Wang:
Detailed check of the LDA + U and GGA + U corrected method for defect calculations in wurtzite ZnO. 1749-1752 - Elena Eremina, Yuri A. Eremin, Natalia Grishina, Thomas Wriedt:
New scheme of the Discrete Sources Method for investigation of a near field enhancement by coupled particles. 1753-1759
- J. R. Johansson, Paul D. Nation, Franco Nori:
QuTiP: An open-source Python framework for the dynamics of open quantum systems. 1760-1772 - Aleksander Jablonski:
An effective algorithm for calculating the Chandrasekhar function. 1773-1782 - Moti Umansky, Daphne Weihs:
Novel algorithm and MATLAB-based program for automated power law analysis of single particle, time-dependent mean-square displacement. 1783-1792 - Carsten Svaneborg:
LAMMPS framework for dynamic bonding and an application modeling DNA. 1793-1802 - Jingjing Zheng, Steven L. Mielke, Kenneth L. Clarkson, Donald G. Truhlar:
MSTor: A program for calculating partition functions, free energies, enthalpies, entropies, and heat capacities of complex molecules including torsional anharmonicity. 1803-1812 - T. Pálmai:
Regularization of multi-soliton form factors in sine-Gordon model. 1813-1821 - Alexandre Arbey:
AlterBBN: A program for calculating the BBN abundances of the elements in alternative cosmologies. 1822-1831 - M. F. Ciappina, T. Kirchner:
SymbMat: Symbolic computation of quantum transition matrix elements. 1832-1840
- Russell M. Pitzer:
Atomic self-consistent-field program by the basis set expansion method: Columbus version. 1841-1842 - Christian Clason, Gregory von Winckel:
A general spectral method for the numerical simulation of one-dimensional interacting fermions. 1843-1844
Volume 183, Number 9, September 2012
- Barbara Schmidt, Matthias Steinhauser:
CRunDec: A C++ package for running and decoupling of the strong coupling and quark masses. 1845-1848 - Wanxiang Feng, Jun Wen, Jinjian Zhou, Di Xiao, Yugui Yao:
First-principles calculation of Z2 topological invariants within the FP-LAPW formalism. 1849-1859 - Luigi Brugnano, Felice Iavernaro, Donato Trigiante:
A two-step, fourth-order method with energy preserving properties. 1860-1868 - Elizabeth T. Williams, James Tickner:
Efficient Monte Carlo simulation of coincidence effects in radioisotope decays including y-y angular correlations. 1869-1876 - Jose Luis Velasco, Andrés Bustos, Francisco Castejón, Luis Antonio Fernández, Victor Martin-Mayor, Alfonso Tarancón:
ISDEP: Integrator of stochastic differential equations for plasmas. 1877-1883 - Topi Siro, Ari Harju:
Exact diagonalization of the Hubbard model on graphics processing units. 1884-1889 - Saeed Ovaysi, Mohammad Piri:
Multi-GPU acceleration of direct pore-scale modeling of fluid flow in natural porous media. 1890-1898 - Tomasz M. Gwizdalla:
The hybrid algorithm for the study of geometric configurations of 2D clusters of uniformly charged classical particles. 1899-1903 - Alberto Talamo, Zhaopeng Zhong, Yousry Gohar:
Monte Carlo and deterministic calculation of the Bell and Glasstone spatial correction factor. 1904-1910 - Kevin Jorissen, Fernando D. Vila, John J. Rehr:
A high performance scientific cloud computing environment for materials simulations. 1911-1919 - Ydalia Delgado Mercado, Hans Gerd Evertz, Christof Gattringer:
Worm algorithms for the 3-state Potts model with magnetic field and chemical potential. 1920-1927 - André Barka, Nicolas Douchin:
Asymptotic simplifications for hybrid BEM/GO/PO/PTD techniques based on a Generalized Scattering Matrix approach. 1928-1936 - Siham Tabik, Luis F. Romero, Petar Mimica, Oscar G. Plata, Emilio L. Zapata:
VLBI-resolution radio-map algorithms: Performance analysis of different levels of data-sharing on multi-socket, multi-core architectures. 1937-1946 - Enying Li, Hu Wang, Guangyao Li:
High dimensional model representation (HDMR) coupled intelligent sampling strategy for nonlinear problems. 1947-1955 - Haochen Li, Jianqiang Sun:
A new multi-symplectic scheme for the generalized Kadomtsev-Petviashvili equation. 1956-1965 - Marco Gherardi, Thomas Jourdan, Solène Le Bourdiec, Guy Bencteux:
Hybrid deterministic/stochastic algorithm for large sets of rate equations. 1966-1973 - Serena Dalena, P. Chuychai, R. L. Mace, Antonella Greco, Gang Qin, William H. Matthaeus:
Streamline generation code for particle dynamics description in numerical models of turbulence. 1974-1985 - Shinya Maeyama, Akihiro Ishizawa, Tomohiko Watanabe, Noriyoshi Nakajima, Shunji Tsuji-Iio, Hiroaki Tsutsui:
A hybrid method of semi-Lagrangian and additive semi-implicit Runge-Kutta schemes for gyrokinetic Vlasov simulations. 1986-1992 - Waseem Kamleh, Mike Peardon:
Polynomial filtered HMC-an algorithm for lattice QCD with dynamical quarks. 1993-2000 - Evandro F. da Silva, Mário J. de Oliveira:
Two versions of the threshold contact model in two dimensions. 2001-2005
- Carroll L. Wainwright:
CosmoTransitions: Computing cosmological phase transition temperatures and bubble profiles with multiple fields. 2006-2013 - Timothy J. McIntyre, Alexis I. Bishop:
Fringe - A Java-based finite fringe analysis package. 2014-2018
- J. Avellar, L. G. S. Duarte, L. A. C. P. da Mota, N. de Melo, J. E. F. Skea:
The Ndynamics package - Numerical analysis of dynamical systems and the fractal dimension of boundaries. 2019-2020 - Dusan Vudragovic, Ivana Vidanovic, Antun Balaz, Paulsamy Muruganandam, Sadhan K. Adhikari:
C programs for solving the time-dependent Gross-Pitaevskii equation in a fully anisotropic trap. 2021-2025
Volume 183, Number 10, October 2012
- Masaharu Matsumoto, Yoshihiro Kajimura, Hideyuki Usui, Ikkoh Funaki, Iku Shinohara:
Application of a total variation diminishing scheme to electromagnetic hybrid particle-in-cell plasma simulation. 2027-2034 - N. Dubray, David Regnier:
Numerical search of discontinuities in self-consistent potential energy surfaces. 2035-2041 - Daniele Viganò, José A. Pons, Juan Antonio Miralles:
A new code for the Hall-driven magnetic evolution of neutron stars. 2042-2053 - Kevin B. Daly, Jay B. Benziger, Pablo G. Debenedetti, Athanassios Z. Panagiotopoulos:
Massively parallel chemical potential calculation on graphics processing units. 2054-2062 - Yanchao Wang, Jian Lv, Li Zhu, Yanming Ma:
CALYPSO: A method for crystal structure prediction. 2063-2070 - Cathal Ó Broin, Lampros A. A. Nikolopoulos:
An OpenCL implementation for the solution of the time-dependent Schrödinger equation on GPUs and CPUs. 2071-2080 - Bokui Chen, Chuanfei Dong, Yike Liu, Wei Tong, Wenyao Zhang, Jie Liu, Binghong Wang:
Real-time information feedback based on a sharp decay weighted function. 2081-2088 - Alejandro León:
An efficient model for studying the dynamics of frustrated systems. 2089-2097 - Ram K. Pandey, Om P. Singh, Vipul K. Baranwal, Manoj P. Tripathi:
An analytic solution for the space-time fractional advection-dispersion equation using the optimal homotopy asymptotic method. 2098-2106 - Hyun Geun Lee, Junseok Kim:
An efficient and accurate numerical algorithm for the vector-valued Allen-Cahn equations. 2107-2115 - Haruhiko Kohno, J. R. Myra, D. A. D'Ippolito:
A finite element procedure for radio-frequency sheath-plasma interactions in the ion cyclotron range of frequencies. 2116-2127 - Alexei Deinega, Sajeev John:
Finite difference discretization of semiconductor drift-diffusion equations for nanowire solar cells. 2128-2135 - Fukuko Yuasa, Elise de Doncker, Nobuyuki Hamaguchi, Tadashi Ishikawa, Kiyoshi Kato, Yoshimasa Kurihara, Junpei Fujimoto, Yoshimitsu Shimizu:
Numerical computation of two-loop box diagrams with masses. 2136-2144
- Bernd A. Berg, Hao Wu:
Fortran code for SU(3) lattice gauge theory with and without MPI checkerboard parallelization. 2145-2157 - Feng Feng:
$Apart: A generalized Mathematica Apart function. 2158-2164 - Florian Staub, Thorsten Ohl, Werner Porod, Christian Speckner:
A tool box for implementing supersymmetric models. 2165-2206 - Lutz Foucar, Anton Barty, Nicola Coppola, Robert Hartmann, Peter Holl, Uwe Hoppe, Stephan Kassemeyer, Nils Kimmel, Jochen Küpper, Mirko Scholz, Simone Techert, Thomas A. White, Lothar Strüder, Joachim Ullrich:
CASS - CFEL-ASG software suite. 2207-2213 - Alfonso García-Parrado Gómez-Lobo, José M. Martín-García:
Spinors: A Mathematica package for doing spinor calculus in General Relativity. 2214-2225 - Gonzalo Alvarez:
Implementation of the SU(2) Hamiltonian symmetry for the DMRG algorithm. 2226-2232 - Victor Liu, Shanhui Fan:
S4 : A free electromagnetic solver for layered periodic structures. 2233-2244 - Adam Buraczewski, Magdalena Stobinska:
Numerical model for macroscopic quantum superpositions based on phase-covariant quantum cloning. 2245-2253 - Priscila de Aquino, William Link, Fabio Maltoni, Olivier Mattelaer, Tim Stelzer:
ALOHA: Automatic libraries of helicity amplitudes for Feynman diagram computations. 2254-2263 - Piotr Magierski, Gabriel Wlazlowski:
LINPRO: Linear inverse problem library for data contaminated by statistical noise. 2264-2271 - Miguel A. L. Marques, Micael J. T. Oliveira, Tobias Burnus:
Libxc: A library of exchange and correlation functionals for density functional theory. 2272-2281 - Daniel Kuchelmeister, Thomas Müller, Marco Ament, Günter Wunner, Daniel Weiskopf:
GPU-based four-dimensional general-relativistic ray tracing. 2282-2290 - Amna Noreen, Kåre Olaussen:
High precision series solutions of differential equations: Ordinary and regular singular points of second order ODEs. 2291-2297 - Renato M. Fonseca:
Calculating the renormalisation group equations of a SUSY model with Susyno. 2298-2306 - H. Hluchá, H. Eberl, W. Frisch:
SFOLD - A program package for calculating two-body sfermion decays at full one-loop level in the MSSM. 2307-2312
- J. Avellar, L. G. S. Duarte, L. A. C. P. da Mota:
PSsolver: A Maple implementation to solve first order ordinary differential equations with Liouvillian solutions. 2313-2314
Volume 183, Number 11, November 2012
- Tarik Hadzibeganovic, Francisco Welington S. Lima, Dietrich Stauffer:
Evolution of tag-mediated altruistic behavior in one-shot encounters on large-scale complex networks. 2315-2321 - Mario Arioli, Serge Gratton:
Linear regression models, least-squares problems, normal equations, and stopping criteria for the conjugate gradient method. 2322-2336 - T. V. S. Sekhar, B. Hema Sundar Raju:
An efficient higher order compact scheme to capture heat transfer solutions in spherical geometry. 2337-2345 - P. J. Knight, A. Thyagaraja, T. D. Edwards, J. Hein, M. Romanelli, K. G. McClements:
CENTORI: A global toroidal electromagnetic two-fluid plasma turbulence code. 2346-2363 - Ki-Hwan Kim, Q.-Han Park:
Overlapping computation and communication of three-dimensional FDTD on a GPU cluster. 2364-2369 - Alan R. Levin, Deyin Zhang, Eric Polizzi:
FEAST fundamental framework for electronic structure calculations: Reformulation and solution of the muffin-tin problem. 2370-2375 - Shin-ichi Satake, Hajime Yoshimori, Takayuki Suzuki:
Optimizations of a GPU accelerated heat conduction equation by a programming of CUDA Fortran from an analysis of a PTX file. 2376-2385 - Fernando Casas, Ander Murua, Mladen Nadinic:
Efficient computation of the Zassenhaus formula. 2386-2391 - Venera Khoromskaia, Dirk Andrae, Boris N. Khoromskij:
Fast and accurate 3D tensor calculation of the Fock operator in a general basis. 2392-2404 - M. Joulaian, Ahmadreza Pishevar, S. Khajepor, Friederike Schmid, Yaser Afshar:
A new algorithm for simulating flows of conducting fluids in the presence of electric fields. 2405-2412 - Ram Jiwari:
A Haar wavelet quasilinearization approach for numerical simulation of Burgers' equation. 2413-2423 - Tiziano Leidi, Giulio Scocchi, Loris Grossi, Simone Pusterla, Claudio D'Angelo, Jean-Philippe Thiran, Alberto Ortona:
Computing effective properties of random heterogeneous materials on heterogeneous parallel processors. 2424-2433 - Frederick Ira Moxley III, Tim Byrnes, Fumitaka Fujiwara, Weizhong Dai:
A generalized finite-difference time-domain quantum method for the N-body interacting Hamiltonian. 2434-2440
- Markus Q. Huber, Mario Mitter:
CrasyDSE: A framework for solving Dyson-Schwinger equations. 2441-2457 - Werner Porod, Florian Staub:
SPheno 3.1: extensions including flavour, CP-phases and models beyond the MSSM. 2458-2469 - A. A. Azooz, S. H. Al-Nia'emi, M. A. Al-Jubbori:
A parameterization of nuclear track profiles in CR-39 detector. 2470-2479 - Anton Nazarov:
Affine.m - Mathematica package for computations in representation theory of finite-dimensional and affine Lie algebras. 2480-2493
- Ján Busa Jr., Shura Hayryan, Ming-Chya Wu, Ján Busa, Chin-Kun Hu:
ARVO-CL: The OpenCL version of the ARVO package - An efficient tool for computing the accessible surface area and the excluded volume of proteins via analytical equations. 2494-2497
Volume 183, Number 12, December 2012
- Beatrice Paternoster:
Present state-of-the-art in exponential fitting. A contribution dedicated to Liviu Ixaru on his 70th birthday. 2499-2512
- Liang Chen, Cheng Lv, Xunya Jiang:
A re-formulation of the transfer matrix method for calculating wave-functions in higher dimensional disordered open systems. 2513-2518 - Valentin V. Karasiev, Samuel B. Trickey:
Issues and challenges in orbital-free density functional calculations. 2519-2527 - Marcelo Fiori, J. E. Miraglia:
New approach for approximating the continuum wave function by Gaussian basis set. 2528-2534 - Suzanne Varet, Sidonie Lefebvre, Gérard Durand, Antoine Roblin, Serge Cohen:
Effective discrepancy and numerical experiments. 2535-2541 - C. S. Bresolin, Amir Antonio Martins Oliveira:
An algorithm based on collision theory for the lattice Boltzmann simulation of isothermal mass diffusion with chemical reaction. 2542-2549 - Kun-Mo Lin, M.-H. Hu, Chieh-Tsan Hung, Jong-Shinn Wu, Feng-Nan Hwang, Y.-S. Chen, Gary C. Cheng:
A parallel hybrid numerical algorithm for simulating gas flow and gas discharge of an atmospheric-pressure plasma jet. 2550-2560 - Gabriel Voitcu, Marius Echim, Richard Marchand:
Comparative study of forward and backward test-kinetic simulation approaches. 2561-2569 - Matteo Antuono, Andrea Colagrossi, Salvatore Marrone:
Numerical diffusive terms in weakly-compressible SPH schemes. 2570-2580 - Alejandro Soba, Edgar Alejandro Bea, Guillaume Houzeaux, Hadrien Calmet, José María Cela:
Real-space density functional theory and time dependent density functional theory using finite/infinite element methods. 2581-2588 - Eero Hirvijoki, A. Snicker, Tuomas Korpilo, P. Lauber, Emanuele Poli, M. Schneller, T. Kurki-Suonio:
Alfvén Eigenmodes and Neoclassical tearing modes for orbit-following implementations. 2589-2593 - Santos B. Yuste, Joaquín Quintana-Murillo:
A finite difference method with non-uniform timesteps for fractional diffusion equations. 2594-2600 - Rajmund Krivec:
Numerical regularization of Klauder effect in QLM. 2601-2607 - Jean-Luc Fattebert, David F. Richards, James N. Glosli:
Dynamic load balancing algorithm for molecular dynamics based on Voronoi cells domain decompositions. 2608-2615 - Suman Sinha:
Performance of Wang-Landau algorithm in lattice model of liquid crystals. 2616-2621
- Darko Veberic:
Lambert W function for applications in physics. 2622-2628 - T. A. Heltemes, G. A. Moses:
BADGER v1.0: A Fortran equation of state library. 2629-2646
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