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ORCIDGenomics, Proteomics & Bioinformatics, Volume 10
Volume 10, Number 1, February 2012
- Jun Yu:
Genomics, Proteomics & Bioinformatics (GPB) Has a New Start - Open Access. 1-3 - Peng Cui, Feng Ding
, Qiang Lin, Lingfang Zhang, Ang Li, Zhang Zhang, Songnian Hu, Jun Yu:
Distinct Contributions of Replication and Transcription to Mutation Rate Variation of Human Genomes. 4-10 - Peng Cui, Qiang Lin, Feng Ding, Songnian Hu, Jun Yu:
The Transcript-centric Mutations in Human Genomes. 11-22 - Lin Hua, Hui Lin, Dongguo Li, Lin Li, Zhicheng Liu:
Mining Functional Gene Modules Linked with Rheumatoid Arthritis Using a SNP-SNP Network. 23-34 - Muhammad Sulaman Nawaz, Sajid Rashid:
MotViz: A Tool for Sequence Motif Prediction in Parallel to Structural Visualization and Analyses. 35-43 - Dheeraj Ravella, Muthukumarasamy Uthaya Kumar, Durairaj Sherlin, Mani Shankar, Marthandan Kirti Vaishnavi, Kanagaraj Sekar:
SMS 2.0: An Updated Database to Study the Structural Plasticity of Short Peptide Fragments in Non-redundant Proteins. 44-50 - Xiaoli Tang, Libin Deng, Dake Zhang, Jiari Lin, Yi Wei, Qinqin Zhou, Xiang Li, Guilin Li, Shangdong Liang:
Gene2DGE: A Perl Package for Gene Model Renewal with Digital Gene Expression Data. 51-54
Volume 10, Number 2, April 2012
- Jun Yu:
Challenges to the Common Dogma. 55-57
- Bilal Wajid, Erchin Serpedin:
Review of General Algorithmic Features for Genome Assemblers for Next Generation Sequencers. 58-73
- Peng Cui, Wanfei Liu, Yuhui Zhao, Qiang Lin, Feng Ding, Chengqi Xin, Jianing Geng, Shuhui Song, Fanglin Sun, Songnian Hu, Jun Yu:
The Association Between H3K4me3 and Antisense Transcription. 74-81 - Peng Cui, Wanfei Liu, Yuhui Zhao, Qiang Lin, Daoyong Zhang, Feng Ding, Chengqi Xin, Zhang Zhang, Shuhui Song, Fanglin Sun, Jun Yu, Songnian Hu:
Comparative Analyses of H3K4 and H3K27 Trimethylations Between the Mouse Cerebrum and Testis. 82-93 - Mingming Xin, Xiangfeng Wang, Huiru Peng, Yingyin Yao, Chaojie Xie, Yao Han, Zhongfu Ni, Qixin Sun:
Transcriptome Comparison of Susceptible and Resistant Wheat in Response to Powdery Mildew Infection. 94-106 - Subhash J. Jakhesara, Viral B. Ahir, Ketan B. Padiya, Prakash G. Koringa, Dharamshibhai N. Rank, Chaitanya G. Joshi:
Tissue-specific Temporal Exome Capture Revealed Muscle-specific Genes and SNPs in Indian Buffalo (Bubalus bubalis). 107-113 - Michael Bao, Miguel Cervantes-Cervantes, Ling Zhong, Jason T. L. Wang:
Searching for Non-coding RNAs in Genomic Sequences Using ncRNAscout. 114-121
Volume 10, Number 3, June 2012
- Jun Yu:
Life on Two Tracks. 123-126
- Nicolas Tchitchek, José Felipe Golib Dzib, Brice Targat, Sebastian Noth, Arndt Benecke, Annick Lesne:
CDS: A Fold-change Based Statistical Test for Concomitant Identification of Distinctness and Similarity in Gene Expression Analysis. 127-135 - Xiaosheng Wang:
Microarray Analysis of Ageing-related Signatures and Their Expression in Tumors Based on a Computational Biology Approach. 136-141 - Fadi Towfic, Shakti Gupta, Vasant G. Honavar, Shankar Subramaniam:
B-cell Ligand Processing Pathways Detected by Large-scale Comparative Analysis. 142-152 - Shishan Deng, Baoqian Jing, Tianyong Xing, Lingmi Hou, Zhengwei Yang:
Overexpression of Annexin A2 Is Associated with Abnormal Ubiquitination in Breast Cancer. 153-157 - Jovana J. Kovacevic:
Computational Analysis of Position-dependent Disorder Content in DisProt Database. 158-165
- Lei Zhang, Fengchun Tian, Shiyuan Wang:
A Modified Statistically Optimal Null Filter Method for Recognizing Protein-coding Regions. 166-173
Volume 10, Number 4, August 2012
- Zhang Zhang, Jun Yu:
The Pendulum Model for Genome Compositional Dynamics: from the Four Nucleotides to the Twenty Amino Acids. 175-180
- Leroy Hood, Qiang Tian:
Systems Approaches to Biology and Disease Enable Translational Systems Medicine. 181-185
- Hao Wu, Hongzhu Qu, Ning Wan, Zhang Zhang, Songnian Hu, Jun Yu:
Strand-biased Gene Distribution in Bacteria Is Related to both Horizontal Gene Transfer and Strand-biased Nucleotide Composition. 186-196 - Gea Guerriero:
Putative Chitin Synthases from Branchiostoma floridae Show Extracellular Matrix-related Domains and Mosaic Structures. 197-207 - Arunabha Chakrabarti, Debashis Mukhopadhyay:
Novel Adaptors of Amyloid Precursor Protein Intracellular Domain and Their Functional Implications. 208-216 - Muthukumarasamy Uthaya Kumar, Bowdadu Benazir, Sanjeev Patra, Marthandan Kirti Vaishnavi, Manickam Gurusaran, Kanagarajan Sureka, Jeyaraman Jeyakanthan, Kanagaraj Sekar:
Homepeptide Repeats: Implications for Protein Structure, Function and Evolution. 217-225
- Kai Willadsen, Nurul Mohamad, Mikael Bodén:
NSort/DB: An Intranuclear Compartment Protein Database. 226-229 - Yanjiao Qi, Nengzhi Jin, Duiyuan Ai:
Wavelet Analysis of DNA Walks on the Human and Chimpanzee MAGE/CSAG-palindromes. 230-236
Volume 10, Number 5, October 2012
- Tongbin Li, William C. S. Cho:
MicroRNAs: Mechanisms, Functions and Progress. 237-238
- Paul Graves, Yan Zeng:
Biogenesis of Mammalian MicroRNAs: A Global View. 239-245 - Yu Li, Kris V. Kowdley:
MicroRNAs in Common Human Diseases. 246-253 - Paula Helena Reyes-Herrera, Elisa Ficarra:
One Decade of Development and Evolution of MicroRNA Target Prediction Algorithms. 254-263 - Jiandong Ding, Shuigeng Zhou, Jihong Guan:
Finding MicroRNA Targets in Plants: Current Status and Perspectives. 264-275 - Wuju Li, Xiaomin Ying, Qixuan Lu, Linxi Chen:
Predicting sRNAs and Their Targets in Bacteria. 276-284
- Cord F. Stähler, Andreas Keller, Petra Leidinger, Christina Backes, Anoop Chandran, Jöerg Wischhusen, Benjamin Meder, Eckart Meese:
Whole miRNome-wide Differential Co-expression of MicroRNAs. 285-294 - Samantha F. Kornfeld, Kyle K. Biggar, Kenneth B. Storey:
Differential Expression of Mature MicroRNAs Involved in Muscle Maintenance of Hibernating Little Brown Bats, Myotis lucifugus: A Model of Muscle Atrophy Resistance. 295-301 - Kyle K. Biggar, Samantha F. Kornfeld, Yulia Maistrovski, Kenneth B. Storey:
MicroRNA Regulation in Extreme Environments: Differential Expression of MicroRNAs in the Intertidal Snail Littorina littorea During Extended Periods of Freezing and Anoxia. 302-309
- Malay Bhattacharyya, Manali Das, Sanghamitra Bandyopadhyay:
miRT: A Database of Validated Transcription Start Sites of Human MicroRNAs. 310-316
Volume 10, Number 6, December 2012
- Kapil Raj Pandey, Narendra Maden, Barsha Poudel, Sailendra Pradhananga, Amit Kumar Sharma:
The Curation of Genetic Variants: Difficulties and Possible Solutions. 317-325
- Lina Ma, Linghu Nie, Jing Liu, Bing Zhang, Shuhui Song, Min Sun, Jin Yang, Yadong Yang, Xiangdong Fang, Songnian Hu, Yongliang Zhao, Jun Yu:
An RNA-seq-based Gene Expression Profiling of Radiation-induced Tumorigenic Mammary Epithelial Cells. 326-335 - Massimo Natale, Alfonso Caiazzo, Enrico M. Bucci, Elisa Ficarra:
A Novel Gaussian Extrapolation Approach for 2D Gel Electrophoresis Saturated Protein Spots. 336-344 - Pavan Umate:
Comparative Genomics of the Lipid-body-membrane Proteins Oleosin, Caleosin and Steroleosin in Magnoliophyte, Lycophyte and Bryophyte. 345-353
- Umair Seemab, Qurrat ul Ain, Muhammad Sulaman Nawaz, Zafar Saeed, Sajid Rashid:
TrFAST: A Tool to Predict Signaling Pathway-specific Transcription Factor Binding Sites. 354-359
- Mohd Danishuddin, Lalima Kaushal, Mohd Hassan Baig, Asad U. Khan:
AMDD: Antimicrobial Drug Database. 360-363 - Dhivya Selvaraj, Dhivya Shanmughanandhan, Rajeev Kumar Sarma, Jijo C. Joseph, Ramachandran V. Srinivasan, Sathishkumar Ramalingam:
DNA Barcode ITS Effectively Distinguishes the Medicinal Plant Boerhavia diffusa from Its Adulterants. 364-367
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