Volume 19, Number 1, January 2012

Highlights

• 
  Lucila Ohno-Machado: Computer-based safety surveillance and patient-centered health records. 1

Perspective

• 
  Enrico W. Coiera, Jos Aarts, Casimir A. Kulikowski: The dangerous decade. 2-5

Reviews

• 
  Simon Y. W. Li, Farah Magrabi, Enrico W. Coiera: A systematic review of the psychological literature on interruption and its patient safety implications. 6-12
• 
  K. M. Augestad, G. Berntsen, K. Lassen, Johan Gustav Bellika, R. Wootton, R. O. Lindsetmo: Standards for reporting randomized controlled trials in medical informatics: a systematic review of CONSORT adherence in RCTs on clinical decision support. 13-21
• 
  K. Ann McKibbon, Cynthia Lokker, Steven M. Handler, Lisa R. Dolovich, Anne Holbrook, Daria O'Reilly, Robyn Tamblyn, Brian J. Hemens, Runki Basu, Sue Troyan, Pavel S. Roshanov: The effectiveness of integrated health information technologies across the phases of medication management: a systematic review of randomized controlled trials. 22-30
• 
  Alan J. Forster, Alison Jennings, Claire Chow, Ciera Leeder, Carl van Walraven: A systematic review to evaluate the accuracy of electronic adverse drug event detection. 31-38
• 
  Jing Du, Young-Taek Park, Nawanan Theera-Ampornpunt, Jeffrey S. McCullough, Stuart M. Speedie: The use of count data models in biomedical informatics evaluation research. 39-44

Research and applications

• 
  Farah Magrabi, Mei-Sing Ong, William Runciman, Enrico W. Coiera: Using FDA reports to inform a classification for health information technology safety problems. 45-53
• 
  J. Marc Overhage, Patrick B. Ryan, Christian G. Reich, Abraham G. Hartzema, Paul E. Stang: Validation of a common data model for active safety surveillance research. 54-60
• 
  Jessica S. Ancker, Lisa M. Kern, Erika L. Abramson, Rainu Kaushal: The Triangle Model for evaluating the effect of health information technology on healthcare quality and safety. 61-65
• 
  Willemijn L. Eppenga, Hieronymus J. Derijks, Jean M. H. Conemans, Walter A. J. J. Hermens, Michel Wensing, Peter A. G. M. De Smet: Comparison of a basic and an advanced pharmacotherapy-related clinical decision support system in a hospital care setting in the Netherlands. 66-71
• 
  Carmen Guadalupe Rodriguez-Gonzalez, Ana Herranz-Alonso, Maria Luisa Martin-Barbero, Esther Duran-Garcia, Maria Isabel Durango-Limarquez, Paloma Hernández-Sampelayo, Maria Sanjurjo-Saez: Prevalence of medication administration errors in two medical units with automated prescription and dispensing. 72-78
• 
  Nicholas P. Tatonetti, Guy Haskin Fernald, Russ B. Altman: A novel signal detection algorithm for identifying hidden drug-drug interactions in adverse event reports. 79-85
• 
  Richard T. Griffey, Helen G. Lo, Elisabeth Burdick, Carol A. Keohane, David W. Bates: Guided medication dosing for elderly emergency patients using real-time, computerized decision support. 86-93
• 
  Richard N. Shiffman, George Michel, Richard M. Rosenfeld, Caryn Davidson: Building better guidelines with BRIDGE-Wiz: development and evaluation of a software assistant to promote clarity, transparency, and implementability. 94-101
• 
  Sherry Yueh-Hsia Chiu, Li-Sheng Chen, Amy Ming-Fang Yen, Tony Hsiu-Hsi Chen: Population-based proband-oriented pedigree information system: application to hypertension with population-based screening data (KCIS No. 25). 102-110

Brief communication

• 
  Joyce C. Niland, Tracey Stiller, Jennifer Neat, Adina Londrc, Dina Johnson, Susan Pannoni: Improving patient safety via automated laboratory-based adverse event grading. 111-115

Perspective

• 
  Leslie Beard, Rebecca Schein, Dante Morra, Kumanan Wilson, Jennifer Keelan: The challenges in making electronic health records accessible to patients. 116-120

Review

• 
  Kate Goddard, Abdul V. Roudsari, Jeremy C. Wyatt: Automation bias: a systematic review of frequency, effect mediators, and mitigators. 121-127

Research and applications

• 
  A. Scott Nielsen, John D. Halamka, R. Philip Kinkel: Internet portal use in an academic multiple sclerosis center. 128-133

Brief communication

• 
  Yu-Chuan Li, Don E. Detmer, Syed Abdul Shabbir, Phung Anh Nguyen, Wen-Shan Jian, George I. Mihalas, Edward H. Shortliffe, Paul C. Tang, Reinhold Haux, Michio Kimura: A global travelers' electronic health record template standard for personal health records. 134-136
• 
  Jenna L. Marquard, Teresa Zayas-Cabán: Commercial off-the-shelf consumer health informatics interventions: recommendations for their design, evaluation and redesign. 137-142

Correspondence

• 
  Robert C. Hsiung: Adoption of electronic health records by medical specialty societies. 143

Messages from AMIA

• 
  Gilad J. Kuperman: President's column: Remarks from incoming Board Chair. 147-148

Volume 19, Number 2, March 2012

Highlights

• 
  Lucila Ohno-Machado: Informatics research to enable clinically relevant, personalized genomic medicine. 149-150

Editorial

• 
  Jeremy M. Berg: National centers for biomedical computing: from the BISTI report to the future. 151-152

Perspectives

• 
  Michael N. Cantor: Translational informatics: an industry perspective. 153-155
• 
  Yves A. Lussier, Walter M. Stadler, James L. Chen: Advantages of genomic complexity: bioinformatics opportunities in microRNA cancer signatures. 156-160
• 
  Eugene J. Schweitzer: Reconciliation of the cloud computing model with US federal electronic health record regulations. 161-165

Brief communications

• 
  Brian D. Athey, James D. Cavalcoli, H. V. Jagadish, Gilbert S. Omenn, Barbara Mirel, Matthias Kretzler, Charles F. Burant, Raphael D. Isokpehi, Charles DeLisi: The NIH National Center for Integrative Biomedical Informatics (NCIBI). 166-170
• 
  Aris Floratos, Barry Honig, Dana Pe'er, Andrea Califano: Using systems and structure biology tools to dissect cellular phenotypes. 171-175
• 
  Tina Kapur, Steve Pieper, Ross T. Whitaker, Stephen R. Aylward, Marianna Jakab, William J. Schroeder, Ron Kikinis: The National Alliance for Medical Image Computing, a roadmap initiative to build a free and open source software infrastructure for translational research in medical image analysis. 176-180
• 
  Isaac S. Kohane, Susanne Churchill, Shawn N. Murphy: A translational engine at the national scale: informatics for integrating biology and the bedside. 181-185
• 
  Scott L. Delp, Joy P. Ku, Vijay S. Pande, Michael A. Sherman, Russ B. Altman: Simbios: an NIH national center for physics-based simulation of biological structures. 186-189
• 
  Mark A. Musen, Natalya Fridman Noy, Nigam H. Shah, Patricia L. Whetzel, Christopher G. Chute, Margaret-Anne D. Storey, Barry Smith: The National Center for Biomedical Ontology. 190-195
• 
  Lucila Ohno-Machado, Vineet Bafna, Aziz A. Boxwala, Brian E. Chapman, Wendy Webber Chapman, Kamalika Chaudhuri, Michele E. Day, Claudiu Farcas, Nathaniel D. Heintzman, Xiaoqian Jiang, Hyeoneui Kim, Jihoon Kim, Michael E. Matheny, Frederic S. Resnic, Staal A. Vinterbo: iDASH: integrating data for analysis, anonymization, and sharing. 196-201
• 
  Arthur W. Toga, Ivo D. Dinov, Paul M. Thompson, Roger P. Woods, John D. Van Horn, David W. Shattuck, Douglas Stott Parker Jr.: The Center for Computational Biology: resources, achievements, and challenges. 202-206
• 
  David K. Crockett, Elaine Lyon, Marc S. Williams, Scott P. Narus, Julio C. Facelli, Joyce A. Mitchell: Utility of gene-specific algorithms for predicting pathogenicity of uncertain gene variants. 207-211

Research and applications

• 
  Abel N. Kho, M. Geoffrey Hayes, Laura Rasmussen-Torvik, Jennifer A. Pacheco, William K. Thompson, Loren L. Armstrong, Joshua C. Denny, Peggy L. Peissig, Aaron W. Miller, Wei-Qi Wei, Suzette J. Bielinski, Christopher G. Chute, Cynthia L. Leibson, Gail P. Jarvik, David R. Crosslin, Christopher S. Carlson, Katherine M. Newton, Wendy A. Wolf, Rex L. Chisholm, William L. Lowe: Use of diverse electronic medical record systems to identify genetic risk for type 2 diabetes within a genome-wide association study. 212-218
• 
  Wei-Qi Wei, Cynthia L. Leibson, Jeanine E. Ransom, Abel N. Kho, Pedro J. Caraballo, High Seng Chai, Barbara P. Yawn, Jennifer A. Pacheco, Christopher G. Chute: Impact of data fragmentation across healthcare centers on the accuracy of a high-throughput clinical phenotyping algorithm for specifying subjects with type 2 diabetes mellitus. 219-224
• 
  Peggy L. Peissig, Luke V. Rasmussen, Richard L. Berg, James G. Linneman, Catherine A. McCarty, Carol Waudby, Lin Chen, Joshua C. Denny, Russell A. Wilke, Jyotishman Pathak, David Carrell, Abel N. Kho, Justin B. Starren: Importance of multi-modal approaches to effectively identify cataract cases from electronic health records. 225-234
• 
  Mark Stevenson, Eneko Agirre, Aitor Soroa: Exploiting domain information for Word Sense Disambiguation of medical documents. 235-240
• 
  Xiaoping Liu, Zhi-Ping Liu, Xing-Ming Zhao, Luonan Chen: Identifying disease genes and module biomarkers by differential interactions. 241-248
• 
  Indra Neil Sarkar: A vector space model approach to identify genetically related diseases. 249-254
• 
  Julia Lasserre, Steffen Arnold, Martin Vingron, Petra Reinke, Carl Hinrichs: Predicting the outcome of renal transplantation. 255-262
• 
  Xiaoqian Jiang, Melanie Osl, Jihoon Kim, Lucila Ohno-Machado: Calibrating predictive model estimates to support personalized medicine. 263-274
• 
  Thomas A. Peterson, Nathan L. Nehrt, DoHwan Park, Maricel G. Kann: Incorporating molecular and functional context into the analysis and prioritization of human variants associated with cancer. 275-283
• 
  Alexander A. Morgan, Vasilios J. Pyrgos, Kari C. Nadeau, Peter R. Williamson, Atul J. Butte: Multiplex meta-analysis of RNA expression to identify genes with variants associated with immune dysfunction. 284-288
• 
  Carrie C. Buchanan, Eric Torstenson, William S. Bush, Marylyn D. Ritchie: A comparison of cataloged variation between International HapMap Consortium and 1000 Genomes Project data. 289-294
• 
  Haiquan Li, Younghee Lee, James L. Chen, Ellen Rebman, Jianrong Li, Yves A. Lussier: Complex-disease networks of trait-associated single-nucleotide polymorphisms (SNPs) unveiled by information theory. 295-305
• 
  Kelly Regan, Kanix Wang, Emily Doughty, Haiquan Li, Jianrong Li, Younghee Lee, Maricel G. Kann, Yves A. Lussier: Translating Mendelian and complex inheritance of Alzheimer's disease genes for predicting unique personal genome variants. 306-316
• 
  Lee A. D. Cooper, Jun Kong, David A. Gutman, Fusheng Wang, Jingjing Gao, Christina Appin, Sharath R. Cholleti, Tony Pan, Ashish Sharma, Lisa Scarpace, Tom Mikkelsen, Tahsin M. Kurç, Carlos S. Moreno, Daniel J. Brat, Joel H. Saltz: Integrated morphologic analysis for the identification and characterization of disease subtypes. 317-323

Messages from AMIA

• 
  Edward H. Shortliffe: President's column: reflections on AMIA's past 3 years. 325-326

Volume 19, Number 3, May 2012

Highlights

• 
  Lucila Ohno-Machado: Cost-effectiveness of informatics and health IT: impact on finances and quality of care. 327

Research and applications

• 
  Mark E. Frisse, Kevin B. Johnson, Hui Nian, Coda L. Davison, Cynthia S. Gadd, Kim M. Unertl, Pat A. Turri, Qingxia Chen: Focus on health information technology, electronic health records and their financial impact: The financial impact of health information exchange on emergency department care. 328-333
• 
  Donald P. Connelly, Young-Taek Park, Jing Du, Nawanan Theera-Ampornpunt, Bradley D. Gordon, Barry A. Bershow, Raymond A. Gensinger Jr., Michael Shrift, Daniel T. Routhe, Stuart M. Speedie: Focus on health information technology, electronic health records and their financial impact: The impact of electronic health records on care of heart failure patients in the emergency room. 334-340
• 
  Daria O'Reilly, Anne Holbrook, Gordon Blackhouse, Sue Troyan, Ron Goeree: Focus on health information technology, electronic health records and their financial impact: Cost-effectiveness of a shared computerized decision support system for diabetes linked to electronic medical records. 341-345
• 
  Allison B. McCoy, Lemuel R. Waitman, Julia B. Lewis, Julie A. Wright, David P. Choma, Randolph A. Miller, Josh F. Peterson: Focus on health information technology, electronic health records and their financial impact: A framework for evaluating the appropriateness of clinical decision support alerts and responses. 346-352
• 
  Joy M. Grossman, Dori A. Cross, Ellyn R. Boukus, Genna R. Cohen: Focus on health information technology, electronic health records and their financial impact: Transmitting and processing electronic prescriptions: experiences of physician practices and pharmacies. 353-359
• 
  Ajit Appari, Emily K. Carian, M. Eric Johnson, Denise L. Anthony: Focus on health information technology, electronic health records and their financial impact: Medication administration quality and health information technology: a national study of US hospitals. 360-367
• 
  Shane P. Stenner, Kevin B. Johnson, Joshua C. Denny: Focus on health information technology, electronic health records and their financial impact: PASTE: patient-centered SMS text tagging in a medication management system. 368-374
• 
  Cindy Parks Thomas, Meelee Kim, Ann McDonald, Peter Kreiner, Stephen J. Kelleher Jr., Michael B. Blackman, Peter N. Kaufman, Grant M. Carrow: Focus on health information technology, electronic health records and their financial impact: Prescribers' expectations and barriers to electronic prescribing of controlled substances. 375-381
• 
  Holly Jordan Lanham, Luci K. Leykum, Reuben R. McDaniel Jr.: Focus on health information technology, electronic health records and their financial impact: Same organization, same electronic health records (EHRs) system, different use: exploring the linkage between practice member communication patterns and EHR use patterns in an ambulatory care setting. 382-391
• 
  Kim M. Unertl, Kevin B. Johnson, Nancy M. Lorenzi: Focus on health information technology, electronic health records and their financial impact: Health information exchange technology on the front lines of healthcare: workflow factors and patterns of use. 392-400
• 
  Stephanie O. Zandieh, Erika L. Abramson, Elizabeth R. Pfoh, Kay Yoon-Flannery, Alison Edwards, Rainu Kaushal: Focus on health information technology, electronic health records and their financial impact: Transitioning between ambulatory EHRs: a study of practitioners' perspectives. 401-406
• 
  Katrina Lindblom, Tess Gregory, Carlene Wilson, Ingrid H. K. Flight, Ian Zajac: Focus on health information technology, electronic health records and their financial impact: The impact of computer self-efficacy, computer anxiety, and perceived usability and acceptability on the efficacy of a decision support tool for colorectal cancer screening. 407-412

Reviews

• 
  Po-Yin Yen, Suzanne Bakken: Review of health information technology usability study methodologies. 413-422
• 
  Daria O'Reilly, Jean-Eric Tarride, Ron Goeree, Cynthia Lokker, K. Ann McKibbon: The economics of health information technology in medication management: a systematic review of economic evaluations. 423-438

Case reports

• 
  Sujha Subramanian, Sonia Hoover, Joann L. Wagner, Jennifer L. Donovan, Abir O. Kanaan, Paula Rochon, Jerry H. Gurwitz, Terry S. Field: Immediate financial impact of computerized clinical decision support for long-term care residents with renal insufficiency: a case study. 439-442
• 
  Stephanie Spellman Kennebeck, Nathan Timm, Michael K. Farrell, S. Andrew Spooner: Impact of electronic health record implementation on patient flow metrics in a pediatric emergency department. 443-447
• 
  Jane Herwehe, Wayne Wilbright, Amir Abrams, Susan Bergson, Joseph Foxhood, Michael Kaiser, Luis Smith, Ke Xiao, Amy Zapata, Manya Magnus: Implementation of an innovative, integrated electronic medical record (EMR) and public health information exchange for HIV/AIDS. 448-452

Perspectives

• 
  Eyal Zimlichman, Ronen Rozenblum, Claudia A. Salzberg, Yeona Jang, Melissa Tamblyn, Robyn Tamblyn, David W. Bates: Lessons from the Canadian national health information technology plan for the United States: opinions of key Canadian experts. 453-459
• 
  Julie J. McGowan, Caitlin M. Cusack, Meryl Bloomrosen: The future of health IT innovation and informatics: a report from AMIA's 2010 policy meeting. 460-467

Research and applications

• 
  Esther M. M. van de Glind, Barbara C. van Munster, René Spijker, Rob J. P. M. Scholten, Lotty Hooft: Focus on information retrieval: Search filters to identify geriatric medicine in Medline. 468-472
• 
  J. Caleb Goodwin, Todd R. Johnson, Trevor Cohen, Jorge R. Herskovic, Elmer V. Bernstam: Focus on information retrieval: Predicting biomedical document access as a function of past use. 473-478
• 
  Mila Petrova, Paul Sutcliffe, K. W. M. (Bill) Fulford, Jeremy Dale: Focus on information retrieval: Search terms and a validated brief search filter to retrieve publications on health-related values in Medline: a word frequency analysis study. 479-488
• 
  Hao Tian, Jin-Mann S. Lin, William C. Reeves: Focus on information retrieval: Utilization of two web-based continuing education courses evaluated by Markov chain model. 489-494

Messages from AMIA

• 
  David W. Bates, Margo Edmunds: AMIA policy activities. 495-496

Volume 19, Number e1, June 2012

Highlights

• 
  Lucila Ohno-Machado: Big science, big data, and a big role for biomedical informatics.

FOCUS on translational bioinformatics - Editorial

• 
  Nigam H. Shah, Jessica D. Tenenbaum: The coming age of data-driven medicine: translational bioinformatics' next frontier.

Research and applications

• 
  Suresh K. Bhavnani, Gowtham Bellala, Sundar Victor, Kevin E. Bassler, Shyam Visweswaran: The role of complementary bipartite visual analytical representations in the analysis of SNPs: a case study in ancestral informative markers.
• 
  Alberto Russu, Alberto Malovini, Annibale A. Puca, Riccardo Bellazzi: Stochastic model search with binary outcomes for genome-wide association studies.
• 
  Alexander A. Morgan, Rong Chen, Atul J. Butte: Clinical utility of sequence-based genotype compared with that derivable from genotyping arrays.
• 
  Mei Liu, Yonghui Wu, Yukun Chen, Jingchun Sun, Zhongming Zhao, Xue-wen Chen, Michael E. Matheny, Hua Xu: Large-scale prediction of adverse drug reactions using chemical, biological, and phenotypic properties of drugs.

FOCUS on clinical research informatics - Perspective

• 
  Michael G. Kahn, Chunhua Weng: Clinical research informatics: a conceptual perspective.

Research and applications

• 
  Alan Tait, Terri Voepel-Lewis, Maureen McGonegal, Robert Levine: Evaluation of a prototype interactive consent program for pediatric clinical trials: a pilot study.
• 
  Michael D. Buck, Sheila Anane, John Taverna, Sam Amirfar, Remle Stubbs-Dame, Jesse Singer: The Hub Population Health System: distributed ad hoc queries and alerts.
• 
  Zhongjie Li, Shengjie Lai, David L. Buckeridge, Honglong Zhang, Yajia Lan, Weizhong Yang: Adjusting outbreak detection algorithms for surveillance during epidemic and non-epidemic periods.
• 
  Scott L. DuVall, Alison M. Fraser, Kerry Rowe, Alun Thomas, Geraldine P. Mineau: Evaluation of record linkage between a large healthcare provider and the Utah Population Database.
• 
  Nicholas R. Anderson, Aaron Abend, Aaron Mandel, Estella M. Geraghty, Davera Gabriel, Rob Wynden, Michael Kamerick, Kent Anderson, Julie Rainwater, Peter Tarczy-Hornoch: Implementation of a deidentified federated data network for population-based cohort discovery.
• 
  Jeffrey M. Ferranti, William Gilbert, Jonathan McCall, Howard Shang, Tanya Barros, Monica M. Horvath: The design and implementation of an open-source, data-driven cohort recruitment system: the Duke Integrated Subject Cohort and Enrollment Research Network (DISCERN).
• 
  Murat Sariyar, Andreas Borg, Klaus Pommerening: Missing values in deduplication of electronic patient data.
• 
  Guergana K. Savova, Janet E. Olson, Sean P. Murphy, Victoria L. Cafourek, Fergus J. Couch, Matthew P. Goetz, James N. Ingle, Vera J. Suman, Christopher G. Chute, Richard M. Weinshilboum: Automated discovery of drug treatment patterns for endocrine therapy of breast cancer within an electronic medical record.
• 
  Luke V. Rasmussen, Peggy L. Peissig, Catherine A. McCarty, Justin Starren: Development of an optical character recognition pipeline for handwritten form fields from an electronic health record.
• 
  Jason S. Mathias, Dana Gossett, David W. Baker: Use of electronic health record data to evaluate overuse of cervical cancer screening.
• 
  Pablo López-García, Martin Boeker, Arantza Illarramendi, Stefan Schulz: Usability-driven pruning of large ontologies: the case of SNOMED CT.
• 
  Mei-Sing Ong, Farah Magrabi, Enrico W. Coiera: Automated identification of extreme-risk events in clinical incident reports.
• 
  Sandra L. MacKenzie, Matt C. Wyatt, Robert Schuff, Jessica D. Tenenbaum, Nick R. Anderson: Practices and perspectives on building integrated data repositories: results from a 2010 CTSA survey.
• 
  Peter B. McGarvey, Sweta Ladwa, Mauricio Oberti, Anca Dana Dragomir, Erin K. Hedlund, David M. Tanenbaum, Baris E. Suzek, Subha Madhavan: Informatics and data quality at collaborative multicenter Breast and Colon Cancer Family Registries.
• 
  Guoqian Jiang, Harold R. Solbrig, Christopher G. Chute: Quality evaluation of value sets from cancer study common data elements using the UMLS semantic groups.
• 
  Xiaoqian Jiang, Aziz A. Boxwala, Robert E. El-Kareh, Jihoon Kim, Lucila Ohno-Machado: A patient-driven adaptive prediction technique to improve personalized risk estimation for clinical decision support.
• 
  Peter J. Embi, Anthony C. Leonard: Evaluating alert fatigue over time to EHR-based clinical trial alerts: findings from a randomized controlled study.
• 
  Stephen Tze-Inn Wu, Hongfang Liu, Dingcheng Li, Cui Tao, Mark A. Musen, Christopher G. Chute, Nigam H. Shah: Unified Medical Language System term occurrences in clinical notes: a large-scale corpus analysis.
• 
  Susan C. Weber, Henry J. Lowe, Amar Das, Todd A. Ferris: A simple heuristic for blindfolded record linkage.
• 
  Robert J. Carroll, William K. Thompson, Anne E. Eyler, Arthur M. Mandelin, Tianxi Cai, Raquel M. Zink, Jennifer A. Pacheco, Chad S. Boomershine, Thomas A. Lasko, Hua Xu, Elizabeth W. Karlson, Raul G. Perez, Vivian Gainer, Shawn N. Murphy, Eric M. Ruderman, Richard M. Pope, Robert M. Plenge, Abel N. Kho, Katherine P. Liao, Joshua C. Denny: Portability of an algorithm to identify rheumatoid arthritis in electronic health records.
• 
  Leonard W. D'Avolio, Ryan Ferguson, Sergey Goryachev, Patricia Woods, Thomas Sabin, Joseph O'Neil, Chester Conrad, Joseph Gillon, Jasmine Escalera, Mary Brophy, Phillip Lavori, Louis D. Fiore: Implementation of the Department of Veterans Affairs' first point-of-care clinical trial.
• 
  Yi Liu, Adrien Coulet, Paea LePendu, Nigam H. Shah: Using ontology-based annotation to profile disease research.

Volume 19, Number 4, July 2012

Highlights

• 
  Lucila Ohno-Machado: Where do we stand in the maze of health information systems? 497

Perspectives

• 
  Leslie Lenert, David Sundwall, Michael Edward Lenert: Shifts in the architecture of the Nationwide Health Information Network. 498-502
• 
  Belinda Seto, Charles P. Friedman: Moving toward multimedia electronic health records: how do we get there? 503-505

Reviews

• 
  Isla M. Hains, Andrew Georgiou, Johanna I. Westbrook: The impact of PACS on clinician work practices in the intensive care unit: a systematic review of the literature. 506-513
• 
  Catherine H. Yu, Robinder Bahniwal, Andreas Laupacis, Eman Leung, Michael S. Orr, Sharon E. Straus: Systematic review and evaluation of web-accessible tools for management of diabetes and related cardiovascular risk factors by patients and healthcare providers. 514-522

Brief communications

• 
  Anuj K. Dalal, Jeffrey L. Schnipper, Eric G. Poon, Deborah H. Williams, Kathleen Rossi-Roh, Allison Macleay, Catherine L. Liang, Nyryan Nolido, Jonas Budris, David W. Bates, Christopher L. Roy: Design and implementation of an automated email notification system for results of tests pending at discharge. 523-528
• 
  George Hripcsak: Visualizing the operating range of a classification system. 529-532
• 
  Chai Young Jung, Katherine A. Sward, Peter J. Haug: Executing medical logic modules expressed in ArdenML using Drools. 533-536
• 
  Julia Adler-Milstein, Ashish K. Jha: Organizational complements to electronic health records in ambulatory physician performance: the role of support staff. 537-540
• 
  Marshall Fleurant, Rachel Kell, Chelsea A. Jenter, Lynn A. Volk, Fang Zhang, David W. Bates, Steven R. Simon: Factors associated with difficult electronic health record implementation in office practice. 541-544
• 
  Warner V. Slack, Hollis B. Kowaloff, Roger B. Davis, Tom Delbanco, Steven E. Locke, Charles Safran, Howard L. Bleich: Evaluation of computer-based medical histories taken by patients at home. 545-548
• 
  S. Trent Rosenbloom, Titus L. Daniels, Thomas R. Talbot, Taylor McClain, Robert Hennes, Shane P. Stenner, Sue Muse, Jim Jirjis, Gretchen Purcell Jackson: Triaging patients at risk of influenza using a patient portal. 549-554

Research and applications

• 
  Adam Wright, Justine E. Pang, Joshua Feblowitz, Francine L. Maloney, Allison R. Wilcox, Karen Sax McLoughlin, Harley Z. Ramelson, Louise I. Schneider, David W. Bates: Improving completeness of electronic problem lists through clinical decision support: a randomized, controlled trial. 555-561
• 
  Nancy Shank: Behavioral health providers' beliefs about health information exchange: a statewide survey. 562-569
• 
  Jeremiah Geronimo Ronquillo, Cheng Li, William T. Lester: Genetic testing behavior and reporting patterns in electronic medical records for physicians trained in a primary care specialty or subspecialty. 570-574
• 
  Paul Estabrooks, Maureen Boyle, Karen M. Emmons, Russell E. Glasgow, Bradford W. Hesse, Robert M. Kaplan, Alexander H. Krist, Richard P. Moser, Martina V. Taylor: Harmonized patient-reported data elements in the electronic health record: supporting meaningful use by primary care action on health behaviors and key psychosocial factors. 575-582
• 
  Sven H. Koch, Charlene R. Weir, Maral Haar, Nancy Staggers, James Agutter, Matthias Görges, Dwayne R. Westenskow: Intensive care unit nurses' information needs and recommendations for integrated displays to improve nurses' situation awareness. 583-590
• 
  Mitchell Feldman, Edward P. Hoffer, G. Octo Barnett, Richard J. Kim, Kathleen Famiglietti, Henry Chueh: Presence of key findings in the medical record prior to a documented high-risk diagnosis. 591-596
• 
  Kenneth D. Mandl, Joshua C. Mandel, Shawn N. Murphy, Elmer V. Bernstam, Rachel L. Ramoni, David A. Kreda, J. Michael McCoy, Ben Adida, Isaac S. Kohane: The SMART Platform: early experience enabling substitutable applications for electronic health records. 597-603
• 
  Amanda Parsons, Colleen McCullough, Jason Wang, Sarah Shih: Validity of electronic health record-derived quality measurement for performance monitoring. 604-609
• 
  Jennifer S. Love, Adam Wright, Steven R. Simon, Chelsea A. Jenter, Christine S. Soran, Lynn A. Volk, David W. Bates, Eric G. Poon: Are physicians' perceptions of healthcare quality and practice satisfaction affected by errors associated with electronic health record use? 610-614
• 
  Dawn Dowding, Marianne Turley, Terhilda Garrido: The impact of an electronic health record on nurse sensitive patient outcomes: an interrupted time series analysis. 615-620
• 
  Bradley H. Crotty, Arash Mostaghimi, Eileen E. Reynolds: Adoption of a wiki within a large internal medicine residency program: a 3-year experience. 621-625
• 
  Peggy J. Wagner, James Dias, Shalon Howard, Kristina W. Kintziger, Matthew F. Hudson, Yoon-Ho Seol, Pat Sodomka: Personal health records and hypertension control: a randomized trial. 626-634
• 
  Robyn Tamblyn, Tewodros Eguale, David L. Buckeridge, Allen Huang, James A. Hanley, Kristen Reidel, Sherry Shi, Nancy Winslade: The effectiveness of a new generation of computerized drug alerts in reducing the risk of injury from drug side effects: a cluster randomized trial. 635-643
• 
  Erika L. Abramson, David W. Bates, Chelsea A. Jenter, Lynn A. Volk, Yolanda Barrón, Jill Quaresimo, Andrew C. Seger, Elisabeth Burdick, Steven R. Simon, Rainu Kaushal: Ambulatory prescribing errors among community-based providers in two states. 644-648
• 
  Magdalena A. Jonikas, Kenneth D. Mandl: Surveillance of medication use: early identification of poor adherence. 649-654
• 
  Zeshan A. Rajput, Samuel Mbugua, David Amadi, Viola Chepngeno, Jason J. Saleem, Yaw Anokwa, Carl Hartung, Gaetano Borriello, Burke W. Mamlin, Samson K. Ndege, Martin C. Were: Evaluation of an Android-based mHealth system for population surveillance in developing countries. 655-659
• 
  Jiaping Zheng, Wendy Webber Chapman, Timothy A. Miller, Chen Lin, Rebecca S. Crowley, Guergana K. Savova: A system for coreference resolution for the clinical narrative. 660-667
• 
  Luther G. Kalb, Cheryl Cohen, Harold Lehmann, Paul Law: Survey non-response in an internet-mediated, longitudinal autism research study. 668-673

Case report

• 
  Barbara Okoniewska, Alecia Graham, Marina Gavrilova, Dannel Wah, Jonathan Gilgen, Jason Coke, Jack Burden, Shikha Nayyar, Joseph Kaunda, Dean Yergens, Barry Baylis, William A. Ghali: Multidimensional evaluation of a radio frequency identification wi-fi location tracking system in an acute-care hospital setting. 674-679

Messages from AMIA

• 
  Kevin M. Fickenscher: President's column: making a difference. 680-681

Volume 19, Number 5, September 2012

Highlights

• 
  Lucila Ohno-Machado: Informatics 2.0: implications of social media, mobile health, and patient-reported outcomes for healthcare and individual privacy. 683

Perspectives

• 
  Chunhua Weng, Paul Appelbaum, George Hripcsak, Ian Kronish, Linda Busacca, Karina W. Davidson, J. Thomas Bigger: Using EHRs to integrate research with patient care: promises and challenges. 684-687
• 
  Barbara L. Massoudi, Kenneth W. Goodman, Ivan J. Gotham, John H. Holmes, Lisa Lang, Kathleen Miner, David D. Potenziani, Janise Richards, Anne M. Turner, Paul C. Fu: An informatics agenda for public health: summarized recommendations from the 2011 AMIA PHI Conference. 688-695

Review

• 
  Marcia Vervloet, Annemiek J. Linn, Julia C. M. van Weert, Dinny H. de Bakker, Marcel L. Bouvy, Liset van Dijk: The effectiveness of interventions using electronic reminders to improve adherence to chronic medication: a systematic review of the literature. 696-704

Research and applications

• 
  Kay Connelly, Katie A. Siek, Beenish Chaudry, Josette Jones, Kim Astroth, Janet L. Welch: An offline mobile nutrition monitoring intervention for varying-literacy patients receiving hemodialysis: a pilot study examining usage and usability. 705-712
• 
  Allison B. McCoy, Adam Wright, Archana Laxmisan, Madelene J. Ottosen, Jacob A. McCoy, David Butten, Dean F. Sittig: Development and evaluation of a crowdsourcing methodology for knowledge base construction: identifying relationships between clinical problems and medications. 713-718
• 
  Annie Y. S. Lau, Vitali Sintchenko, Jacinta Crimmins, Farah Magrabi, Blanca Gallego, Enrico W. Coiera: Impact of a web-based personally controlled health management system on influenza vaccination and health services utilization rates: a randomized controlled trial. 719-727
• 
  Jeffrey L. Schnipper, Tejal K. Gandhi, Jonathan S. Wald, Richard W. Grant, Eric G. Poon, Lynn A. Volk, Alexandra Businger, Deborah H. Williams, Elizabeth Siteman, Lauren Buckel, Blackford Middleton: Effects of an online personal health record on medication accuracy and safety: a cluster-randomized trial. 728-734
• 
  Shobha Phansalkar, Amrita A. Desai, Douglas S. Bell, Eileen Yoshida, John Doole, Melissa Czochanski, Blackford Middleton, David W. Bates: High-priority drug-drug interactions for use in electronic health records. 735-743
• 
  Heather M. Whitford, Peter T. Donnan, Andrew G. Symon, Gillian Kellett, Ewa Monteith-Hodge, Petra Rauchhaus, Jeremy C. Wyatt: Evaluating the reliability, validity, acceptability, and practicality of SMS text messaging as a tool to collect research data: results from the Feeding Your Baby project. 744-749
• 
  Staal A. Vinterbo, Anand D. Sarwate, Aziz A. Boxwala: Protecting count queries in study design. 750-757
• 
  Yuan Wu, Xiaoqian Jiang, Jihoon Kim, Lucila Ohno-Machado: Grid Binary LOgistic REgression (GLORE): building shared models without sharing data. 758-764
• 
  Sang Jay Bien, Chan Hee Park, Hae Jin Shim, Woongcheol Yang, Jihun Kim, Ju Han Kim: Bi-directional semantic similarity for gene ontology to optimize biological and clinical analyses. 765-774

Brief communications

• 
  Taha A. Kass-Hout, David L. Buckeridge, John S. Brownstein, Zhiheng Xu, Paul McMurray, Charles K. T. Ishikawa, Julia E. Gunn, Barbara L. Massoudi: Self-reported fever and measured temperature in emergency department records used for syndromic surveillance. 775-776
• 
  Marcio von Muhlen, Lucila Ohno-Machado: Reviewing social media use by clinicians. 777-781

Case report

• 
  Abdelali Boussadi, Thibaut Caruba, Eric Zapletal, Brigitte Sabatier, Pierre Durieux, Patrice Degoulet: A clinical data warehouse-based process for refining medication orders alerts. 782-785

Review

• 
  Özlem Uzuner, Andreea Bodnari, Shuying Shen, Tyler Forbush, John Pestian, Brett R. South: Evaluating the state of the art in coreference resolution for electronic medical records. 786-791

Research and applications

• 
  Yan Xu, Junichi Tsujii, Eric I.-Chao Chang: Named entity recognition of follow-up and time information in 20 000 radiology reports. 792-799
• 
  Balaji Polepalli Ramesh, Rashmi Prasad, Tim Miller, Brian Harrington, Hong Yu: Automatic discourse connective detection in biomedical text. 800-808
• 
  Rosa L. Figueroa, Qing Zeng-Treitler, Long H. Ngo, Sergey Goryachev, Eduardo P. Wiechmann: Active learning for clinical text classification: is it better than random sampling? 809-816
• 
  Cosmin Adrian Bejan, Fei Xia, Lucy Vanderwende, Mark M. Wurfel, Meliha Yetisgen-Yildiz: Pneumonia identification using statistical feature selection. 817-823
• 
  Yan Xu, Kai Hong, Junichi Tsujii, Eric I.-Chao Chang: Feature engineering combined with machine learning and rule-based methods for structured information extraction from narrative clinical discharge summaries. 824-832
• 
  Kavishwar B. Wagholikar, Kathy L. MacLaughlin, Michael R. Henry, Robert A. Greenes, Ronald A. Hankey, Hongfang Liu, Rajeev Chaudhry: Clinical decision support with automated text processing for cervical cancer screening. 833-839
• 
  Casey Lynnette Overby, Emily Beth Devine, Peter Tarczy-Hornoch, Ira J. Kalet: Deriving rules and assertions from pharmacogenomics knowledge resources in support of patient drug metabolism efficacy predictions. 840-850
• 
  Parikshit Sondhi, Jimeng Sun, ChengXiang Zhai, Robert Sorrentino, Martin S. Kohn: Leveraging medical thesauri and physician feedback for improving medical literature retrieval for case queries. 851-858
• 
  Jennifer H. Garvin, Scott L. DuVall, Brett R. South, Bruce E. Bray, Daniel Bolton, Julia Heavirland, Steve Pickard, Paul Heidenreich, Shuying Shen, Charlene R. Weir, Matthew H. Samore, Mary K. Goldstein: Automated extraction of ejection fraction for quality measurement using regular expressions in Unstructured Information Management Architecture (UIMA) for heart failure. 859-866
• 
  Siddhartha Jonnalagadda, Dingcheng Li, Sunghwan Sohn, Stephen Tze-Inn Wu, Kavishwar Wagholikar, Manabu Torii, Hongfang Liu: Coreference analysis in clinical notes: a multi-pass sieve with alternate anaphora resolution modules. 867-874
• 
  Bryan Rink, Kirk Roberts, Sanda M. Harabagiu: A supervised framework for resolving coreference in clinical records. 875-882
• 
  Henry Ware, Charles J. Mullett, Vasudevan Jagannathan, Oussama El-Rawas: Machine learning-based coreference resolution of concepts in clinical documents. 883-887
• 
  Hong-Jie Dai, Chun-Yu Chen, Chi-Yang Wu, Po-Ting Lai, Richard Tzong-Han Tsai, Wen-Lian Hsu: Coreference resolution of medical concepts in discharge summaries by exploiting contextual information. 888-896
• 
  Yan Xu, Jiahua Liu, Jiajun Wu, Yue Wang, Zhuowen Tu, Jian-Tao Sun, Junichi Tsujii, Eric I.-Chao Chang: A classification approach to coreference in discharge summaries: 2011 i2b2 challenge. 897-905
• 
  Andreea Bodnari, Peter Szolovits, Özlem Uzuner: MCORES: a system for noun phrase coreference resolution for clinical records. 906-912

Brief communications

• 
  Bethany Percha, Houssam Nassif, Jafi Lipson, Elizabeth S. Burnside, Daniel L. Rubin: Automatic classification of mammography reports by BI-RADS breast tissue composition class. 913-916

Correspondence

• 
  Stan Matwin, Vera Sazonova: Direct comparison between support vector machine and multinomial naive Bayes algorithms for medical abstract classification. 917

Messages from AMIA

• 
  Kevin M. Fickenscher: President's column: two important decisions, one clear direction... 918

Volume 19, Number 6, November 2012

Highlights

• 
  Lucila Ohno-Machado: Careers in informatics: a diversity of options with an abundance of jobs. 919

Editorial

• 
  Daniel R. Masys, Jeffrey J. Williamson: American College of Medical Informatics Fellows, 2010 and 2011. 920-930

Perspectives

• 
  Casimir A. Kulikowski, Edward H. Shortliffe, Leanne M. Currie, Peter L. Elkin, Lawrence E. Hunter, Todd R. Johnson, Ira J. Kalet, Leslie A. Lenert, Mark A. Musen, Judy G. Ozbolt, Jack W. Smith, Peter Tarczy-Hornoch, Jeffrey J. Williamson: AMIA Board white paper: definition of biomedical informatics and specification of core competencies for graduate education in the discipline. 931-938
• 
  Hazim Timimi, Dennis Falzon, Philippe Glaziou, Charalambos Sismanidis, Katherine Floyd: WHO guidance on electronic systems to manage data for tuberculosis care and control. 939-941

Review

• 
  Jeremy S. Stultz, Milap C. Nahata: Computerized clinical decision support for medication prescribing and utilization in pediatrics. 942-953

Brief communication

• 
  Per H. Gesteland, Yarden Livnat, Nathan Galli, Matthew H. Samore, Adi V. Gundlapalli: The EpiCanvas infectious disease weather map: an interactive visual exploration of temporal and spatial correlations. 954-959
• 
  Crystale Purvis Cooper, Cynthia A. Gelb, Sun Hee Rim, Nikki A. Hawkins, Juan L. Rodriguez, Lindsey Polonec: Physicians who use social media and other internet-based communication technologies. 960-964

Research and applications

• 
  David C. Kaelber, Wendy Foster, Jason Gilder, Thomas E. Love, Anil K. Jain: Patient characteristics associated with venous thromboembolic events: a cohort study using pooled electronic health record data. 965-972
• 
  Roslyn A. Stone, Mary Ann Sevick, R. Harsha Rao, David S. Macpherson, Chunrong Cheng, Sunghee Kim, Linda J. Hough, Frederick R. DeRubertis: The Diabetes Telemonitoring Study Extension: an exploratory randomized comparison of alternative interventions to maintain glycemic control after withdrawal of diabetes home telemonitoring. 973-979
• 
  Joan S. Ash, James L. McCormack, Dean F. Sittig, Adam Wright, Carmit McMullen, David W. Bates: Standard practices for computerized clinical decision support in community hospitals: a national survey. 980-987
• 
  Erel Joffe, Ofer Havakuk, Jorge R. Herskovic, Vimla L. Patel, Elmer Victor Bernstam: Collaborative knowledge acquisition for the design of context-aware alert systems. 988-994
• 
  Pankaj Sarin, Richard D. Urman, Lucila Ohno-Machado: An improved model for predicting postoperative nausea and vomiting in ambulatory surgery patients using physician-modifiable risk factors. 995-1002
• 
  Melissa T. Baysari, Margaret H. Reckmann, Ling Li, Richard O. Day, Johanna I. Westbrook: Failure to utilize functions of an electronic prescribing system and the subsequent generation of 'technically preventable' computerized alerts. 1003-1010
• 
  Taxiarchis Botsis, Thomas Buttolph, Michael D. Nguyen, Scott Winiecki, Emily Jane Woo, Robert Ball: Vaccine adverse event text mining system for extracting features from vaccine safety reports. 1011-1018
• 
  Jeffrey A. Linder, Jeffrey L. Schnipper, Blackford Middleton: Method of electronic health record documentation and quality of primary care. 1019-1024
• 
  Lena Mamykina, David K. Vawdrey, Peter D. Stetson, Kai Zheng, George Hripcsak: Clinical documentation: composition or synthesis? 1025-1031
• 
  Annika Terner, Helena Lindstedt, Karin Sonnander: Predefined headings in a multiprofessional electronic health record system. 1032-1038
• 
  Ibrahim Taiwo Adeleke, Adedeji Olugbenga Adekanye, Kayode Abiodun Onawola, Alaba George Okuku, Samuel Adebowale Adefemi, Sunday Adesubomi Erinle, AbdurRahman Alhaji Shehu, Olubunmi Edith Yahaya, AbdulLateef Adisa Adebisi, John Adeniran James, Oloundare Olanrewaju AbdulGhaney, Lateef Mosebolatan Ogundiran, Abdullahi Daniyan Jibril, Moses Esimy Atakere, Moses Achinbee, Oluwaseun Ayoade Abodunrin, Muhammad Wasagi Hassan: Data quality assessment in healthcare: a 365-day chart review of inpatients' health records at a Nigerian tertiary hospital. 1039-1042
• 
  Laurie L. Novak, Shilo Anders, Cynthia S. Gadd, Nancy M. Lorenzi: Mediation of adoption and use: a key strategy for mitigating unintended consequences of health IT implementation. 1043-1049
• 
  Richard J. Holden, Roger L. Brown, Matthew Scanlon, Ben-Tzion Karsh: Modeling nurses' acceptance of bar coded medication administration technology at a pediatric hospital. 1050-1058
• 
  Olufunmilola Odukoya, Michelle A. Chui: Retail pharmacy staff perceptions of design strengths and weaknesses of electronic prescribing. 1059-1065
• 
  Santiago Vilar, Rave Harpaz, Eugenio Uriarte, Lourdes Santana, Raul Rabadan, Carol Friedman: Drug-drug interaction through molecular structure similarity analysis. 1066-1074
• 
  Taha A. Kass-Hout, Zhiheng Xu, Paul McMurray, Soyoun Park, David L. Buckeridge, John S. Brownstein, Lyn Finelli, Samuel L. Groseclose: Application of change point analysis to daily influenza-like illness emergency department visits. 1075-1081
• 
  Srikrishna Sridhar, Patricia Flatley Brennan, Stephen J. Wright, Stephen M. Robinson: Optimizing financial effects of HIE: a multi-party linear programming approach. 1082-1088
• 
  Jack Tsai, Robert A. Rosenheck: Use of the internet and an online personal health record system by US veterans: comparison of Veterans Affairs mental health service users and other veterans nationally. 1089-1094
• 
  Robert R. Freimuth, Elaine T. Freund, Lisa Schick, Mukesh K. Sharma, Grace A. Stafford, Baris E. Suzek, Joyce Hernandez, Jason Hipp, Jenny M. Kelley, Konrad Rokicki, Sue Pan, Andrew Buckler, Todd H. Stokes, Anna T. Fernandez, Ian Fore, Kenneth H. Buetow, Juli D. Klemm: Life sciences domain analysis model. 1095-1102
• 
  Hsun-Hsien Chang, Kelly Soderberg, Jason A. Skinner, Jacques Banchereau, Damien Chaussabel, Barton F. Haynes, Marco Ramoni, Norman L. Letvin: Transcriptional network predicts viral set point during acute HIV-1 infection. 1103-1109

Case reports

• 
  Philip R. O. Payne, Rebecca D. Jackson, Thomas M. Best, Tara Borlawsky, Albert M. Lai, Stephen L. James, Metin N. Gurcan: Applying knowledge-anchored hypothesis discovery methods to advance clinical and translational research: the OAMiner project. 1110-1114
• 
  Keith Marsolo, Jeremy Corsmo, Michael G. Barnes, Carrie Pollick, Jamie Chalfin, Jeremy Nix, Christopher Smith, Rajesh Ganta: Challenges in creating an opt-in biobank with a registrar-based consent process and a commercial EHR. 1115-1118

Correspondence

• 
  Alissa L. Russ, Michael Weiner, Jason J. Saleem, Robert L. Wears: When 'technically preventable' alerts occur, the design - not the prescriber - has failed. 1119
• 
  Melissa T. Baysari, Richard O. Day, Johanna I. Westbrook: Consistency or efficiency? A dilemma for designers. 1119-1120
• 
  Jonathan A. Handler, James G. Adams: In response to: Method of electronic health record documentation and quality of primary care. 1120

Messages from AMIA

• 
  Kevin M. Fickenscher: President's column: Informatics professionals - leading the way? 1122