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ORCIDJournal of Integrative Bioinformatics, Volume 8
Volume 8, Number 1, 2011
- Sabrina Pross, Bernhard Bachmann
:
An Advanced Environment for Hybrid Modeling of Biological Systems Based on Modelica. - Andreas Pürzer, Felix Grassmann, Dietmar Birzer, Rainer Merkl:
Key2Ann: a tool to process sequence sets by replacing database identifiers with a human-readable annotation. - Jeffrey Q. Jiang, Andreas W. M. Dress, Ming Chen:
Retraction: Towards Prediction and Prioritization of disease genes by the modularity of human phenome-genome assembled network. - Mohammad Tabrez Anwar Shamim, Hampapathalu A. Nagarajaram:
A Hierarchical Approach to Protein Fold Prediction. - Gürkan Üstünkar, Yesim Aydin Son:
METU-SNP: An Integrated Software System for SNP-Complex Disease Association Analysis.
Volume 8, Number 2, 2011
- Malik Alawi, Stefan Kurtz, Michael Beckstette:
CASSys: an integrated software-system for the interactive analysis of ChIP-seq data. - Victor Lesk, Jan Taubert, Christopher J. Rawlings, Stuart J. Dunbar, Stephen H. Muggleton:
WIBL: Workbench for Integrative Biological Learning. - Christian Hildebrandt, Sebastian Wolf, Steffen Neumann:
Database supported candidate search for Metabolite identification. - Christian Loyek, Alexander Bunkowski, Wolfgang Vautz, Tim W. Nattkemper:
Web2.0 paves new ways for collaborative and exploratory analysis of chemical compounds in spectrometry data. - Can Türker, Fuat Akal, Ralph Schlapbach:
Life Sciences Data and Application Integration with B-Fabric. - Ke Lin, Harrie Kools, Philip J. de Groot, Anand K. Gavai, Ram K. Basnet, Feng Cheng, Jian Wu, Xiaowu Wang, Arjen Lommen, Guido J. E. K. Hooiveld, Guusje Bonnema, Richard G. F. Visser, Michael R. Müller, Jack A. M. Leunissen:
MADMAX - Management and analysis database for multiple ~omics experiments. - Jung Soh, Mei Xiao, Thao Do, Oscar Meruvia Pastor, Christoph W. Sensen:
Integrative Visualization of Temporally Varying Medical Image Patterns. - Hendrik Mehlhorn, Falk Schreiber:
DBE2 - Management of experimental data for the VANTED system. - Pawel Sztromwasser, Pål Puntervoll, Kjell Petersen:
Data partitioning enables the use of standard SOAP Web Services in genome-scale workflows. - Vesna Pajic:
Putting Encyclopaedia Knowledge into Structural Form: Finite State Transducers Approach. - Kamal Taha, Ramez Elmasri:
GMB: An Efficient Query Processor for Biological Data. - Marco Masseroli, Giorgio Ghisalberti, Stefano Ceri:
Bio-Search Computing: Integration and global ranking of bioinformatics search results. - Laura M. F. Bertens, Joris Slob, Fons J. Verbeek:
A generic organ based ontology system, applied to vertebrate heart anatomy, development and physiology. - Bernd W. Brandt, Jaap Heringa:
Protein analysis tools and services at IBIVU. - Yanju Zhang, Elia Stupka, Christiaan V. Henkel, Hans J. Jansen, Herman P. Spaink, Fons J. Verbeek:
Identification of Common Carp Innate Immune Genes with Whole-Genome Sequencing and RNA-Seq Data. - BalaKrishna Kolluru, Sirintra Nakjang, Robert P. Hirt, Anil Wipat, Sophia Ananiadou:
Automatic extraction of microorganisms and their habitats from free text using text mining workflows. - Neil Swainston, Kieran Smallbone, Pedro Mendes, Douglas B. Kell, Norman W. Paton:
The SuBliMinaL Toolbox: automating steps in the reconstruction of metabolic networks. - Erik van den Akker, Bas Verbruggen, Bas T. Heijmans, Marian Beekman, Joost N. Kok, Pieternella E. Slagboom, Marcel J. T. Reinders:
Integrating Protein-Protein Interaction Networks with Gene-Gene Co-Expression Networks improves Gene Signatures for Classifying Breast Cancer Metastasis.
Volume 8, Number 3, 2011
- Lionel Morgado, Carlos Pereira, Paula Veríssimo, António Dourado:
Modelling Proteolytic Enzymes With Support Vector Machines. - Hugo López-Fernández, Miguel Reboiro-Jato, Daniel Glez-Peña, José Ramón Méndez Reboredo, Hugo Miguel Santos, Ricardo Jorge Carreira, José Luis Capelo-Martínez, Florentino Fdez-Riverola:
Rapid development of proteomic applications with the AIBench framework. - Carlos A. C. Bastos, Vera Afreixo, Armando J. Pinho, Sara P. Garcia, João M. O. S. Rodrigues, Paulo Jorge S. G. Ferreira:
Inter-dinucleotide distances in the human genome: an analysis of the whole-genome and protein-coding distributions. - Saleh Enbiya, Fatima Mahieddine, M. Alamgir Hossain:
Model Reference Adaptive Scheme for Multi-drug Infusion for Blood Pressure Control. - Fernando José Mateus da Silva, Juan Manuel Sánchez-Pérez, Juan Antonio Gómez Pulido, Miguel A. Vega-Rodríguez:
Parallel Niche Pareto AlineaGA - an Evolutionary Multiobjective approach on Multiple Sequence Alignment. - André Valério Carreiro, Orlando Anunciação, João André Carriço, Sara Cordeiro Madeira:
Prognostic Prediction through Biclustering-Based Classification of Clinical Gene Expression Time Series. - Lourdes Borrajo, Rubén Romero, Eva Lorenzo Iglesias, Carmen M. Redondo Marey:
Improving imbalanced scientific text classification using sampling strategies and dictionaries. - Rosalía Laza, Reyes Pavón, Miguel Reboiro-Jato, Florentino Fdez-Riverola:
Evaluating the effect of unbalanced data in biomedical document classification. - Sérgio Matos, José Luís Oliveira:
Classification methods for finding articles describing protein-protein interactions in PubMed. - Rita Margarida Teixeira Ascenso:
Bioinformatics tools help molecular characterization of Perkinsus olseni differentially expressed genes. - David N. Olivieri, José Faro, Iván Gómez-Conde, Carlos E. Tadokoro:
Tracking T and B cells from two-photon microscopy imaging using constrained SMC clusters. - Gualberto Asencio-Cortés, Jesús S. Aguilar-Ruiz:
Predicting protein distance maps according to physicochemical properties. - Rui Camacho, Max Pereira, Vítor Santos Costa, Nuno A. Fonseca, Carlos Adriano Gonçalves, Carlos J. V. Simões, Rui M. M. Brito:
A Relational Learning Approach to Structure-Activity Relationships in Drug Design Toxicity Studies. - Anália Lourenço, Sónia Carneiro, José P. Pinto, Miguel Rocha, Eugénio C. Ferreira, Isabel Rocha:
A Study of the Short and Long-term Regulation of E. coli Metabolic Pathways.
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