Nucleic Acids Research, Volume 25

Volume 25, Number 1, January 1997

• Dennis A. Benson, Mark S. Boguski, David J. Lipman, James Ostell:
  GenBank. 1-6
  
• Guenter Stoesser, Peter Sterk, Mary Ann Tuli, Peter Stoehr, Graham Cameron:
  The EMBL Nucleotide Sequence Database. 7-14
  
• Yoshio Tateno, Takashi Gojobori:
  DNA Data Bank of Japan in the age of information biology. 14-17
  
• Carol Harger, M. P. Skupski, E. Allen, C. Clark, David Crowley, Emily Dickinson, D. Easley, Ada Espinosa-Lujan, Andrew D. Farmer, Chris A. Fields, L. Flores, L. Harris, Gifford Keen, Mo Manning, Michael P. McLeod, John O'Neill, Maria Pumilia, Rhonda Reinert, David Rider, John Rohrlich, Y. Romero, Jolene Schwertfeger, G. A. Seluja, Adam C. Siepel, P. A. Schad:
  The Genome Sequence DataBase version 1.0 (GSDB): from low pass sequences to complete genomes. 18-23
  
• David G. George, Robert J. Dodson, John S. Garavelli, Daniel H. Haft, Lois T. Hunt, Christopher R. Marzec, Bruce C. Orcutt, Kathryn E. Sidman, Geetha Y. Srinivasarao, Lai-Su L. Yeh, Leslie Arminski, Robert S. Ledley, Akira Tsugita, Winona C. Barker:
  The Protein Information Resource (PIR) and the PIR-International Protein Sequence Database. 24-28
  
• Hans-Werner Mewes, Kaj Albermann, Klaus Heumann, S. Lieb, Friedhelm Pfeiffer:
  MIPS: a database for protein sequences, homology data and yeast genome information. 28-30
  
• Amos Bairoch, Rolf Apweiler:
  The SWISS-PROT protein sequence data bank and its supplement TrEMBL. 31-36
  
• Evgeni Selkov, Miliusha Galimova, Igor Goryanin, Yuri Grechkin, Natalia Ivanova, Yuri Komarov, Natalia Maltsev, Natalia Mikhailova, Valeri Nenashev, Ross A. Overbeek, Elena Panyushkina, Lyudmila Pronevitch, Evgeni Selkov Jr.:
  The metabolic pathway collection: an update. 37-38
  
• Manfred Kröger, Ralf Wahl:
  Compilation of DNA sequences of Escherichia coli K12: description of the interactive databases ECD and ECDC (update 1996). 39-42
  
• Peter D. Karp, Monica Riley, Suzanne M. Paley, Alida Pellegrini-Toole, Markus Krummenacker:
  EcoCyc: Enyclopedia of Escherichia coli Genes and Metabolism. 43-51
  
• Monica Riley:
  Genes and proteins of Escherichia coli K-12 (GenProtEC). 51-52
  
• Guy Perrière, Ivan Moszer, Takashi Gojobori:
  The NRSub database: update 1997. 53-56
  
• William E. Payne, James I. Garrels:
  Yeast Protein database (YPD): a database for the complete proteome of Saccharomyces cerevisiae. 57-62
  
• William M. Gelbart, Madeline A. Crosby, Beverley Matthews, W. P. Rindone, J. Chillemi, S. Russo Twombly, David Emmert, Michael Ashburner, Rachel A. Drysdale, E. Whitfield, Gillian H. Millburn, A. de Grey, T. Kaufman, K. Matthews, David Gilbert, Victor B. Strelets, C. Tolstoshev: FlyBase: a Drosophila database. The FlyBase consortium. 63-66
• Bernard Jacq, Florence Horn, Florence Janody, Nicolas Gompel, Olivier Serralbo, Elodie Mohr, Christine Leroy, Bernard Bellon, Laurent Fasano, Patrick Laurenti, Laurence Röder:
  GIF-DB, a WWW database on gene interactions involved in Drosophila melanogaster development. 67-71
  
• Kenneth H. Fasman, Stanley Letovsky, Peter W. D. Li, Robert W. Cottingham, David T. Kingsbury:
  The GDB Human Genome Database Anno 1997. 72-81
  
• Patricia Rodriguez-Tomé, Philip Lijnzaad:
  The Radiation Hybrid Database. 81-84
  
• Judith A. Blake, Joel E. Richardson, Muriel T. Davisson, Janan T. Eppig:
  The Mouse Genome Database (MGD). A comprehensive public resource of genetic, phenotypic and genomic data. The Mouse Genome Informatics Group. 85-91
  
• Maria Giuseppina Campi, Mirco Castoldi, Paolo Romano, Eduardo Thüroff, Maria Assunta Manniello, Beatrice Iannotta, Gabriella Rondanina, Tiziana Ruzzon, Leonardo Santi:
  Molecular Probe Data Base (MPDB). 92-95
  
• Thomas Specht, Maciej Szymanski, Miroslawa Z. Barciszewska, Jan Barciszewski, Volker A. Erdmann:
  Compilation of 5S rRNA and 5S rRNA gene sequences. 96-97
  
• Jian Gu, Ram Reddy:
  Small RNA database. 98-102
  
• Christian Zwieb:
  The uRNA database. 102-103
  
• Augustine E. Souza, Thomas Hermann, H. Ulrich Göringer:
  The guide RNA database. 104-106
  
• Christian Zwieb, Niels Larsen:
  The Signal Recognition Particle Database (SRPDB). 107-108
  
• Bonnie L. Maidak, Gary J. Olsen, Niels Larsen, Ross A. Overbeek, Michael J. McCaughey, Carl R. Woese:
  The RDP (Ribosomal Database Project). 109-111
  
• Yves Van de Peer, Jan Jansen, Peter De Rijk, Rupert De Wachter:
  Database on the structure of small ribosomal subunit RNA. 111-116
  
• Peter De Rijk, Yves Van de Peer, Rupert De Wachter:
  Database on the structure of large ribosomal subunit RNA. 117-122
  
• Daniel A. Lafontaine, Stéphane Mercure, Jean-Pierre Perreault:
  Update of the viroid and viroid-like sequence database: addition of a hepatitis delta virus RNA section. 123-125
  
• Pamela F. Crain, James A. McCloskey:
  The RNA modification database. 126-127
  
• Geoffrey Kemball-Cook, Edward G. D. Tuddenham:
  The Factor VIII Mutation Database on the World Wide Web: the haemophilia A mutation, search, test and resource site. HAMSTeRS update (version 3.0). 128-132
  
• F. Giannelli, P. M. Green, S. S. Sommer, M.-C. Poon, M. Ludwig, Rainer Schwaab, Pieter H. Reitsma, M. Goossens, A. Yoshioka, M. S. Figueiredo, George G. Brownlee:
  Haemophilia B: database of point mutations and short additions and deletions, 7th edition. 133-135
  
• Neal F. Cariello, George R. Douglas, Mark J. Dycaico, Nancy J. Gorelick, G. Scott Provost, Thierry Soussi:
  Databases and software for the analysis of mutations in the human p53 gene, the human hprt gene and both the lacI and lacZ gene in transgenic rodents. 136-137
  
• Christophe Béroud, Thierry Soussi:
  p53 and APC gene mutations: software and databases. 138
  
• Piotr M. Nowacki, Susan Byck, Lynne Prevost, Charles R. Scriver:
  The PAH mutation analysis consortium database: update 1996. 139-142
  
• Xavier Cousin, Thierry Hotelier, Kurt Giles, Philippe Liévin, Jean-Pierre Toutant, Arnaud Chatonnet:
  The alpha/beta fold family of proteins database and the cholinesterase gene server ESTHER. 143-146
  
• Gwenaëlle Collod-Béroud, Christophe Béroud, Lesley Adès, Cheryl Black, Maureen Boxer, David J. H. Brock, Maurice Godfrey, Caroline Hayward, Leena Karttunen, Dianna Milewicz, Leena Peltonen, Robert I. Richards, Mei Wang, Claudine Junien, Catherine Boileau:
  Marfan Database (second edition): software and database for the analysis of mutations in the human FBN1 gene. 147-150
  
• P. Hainaut, Thierry Soussi, Benny Shomer, M. Hollstein, M. Greenblatt, Eivind Hovig, C. C. Harris, R. Montesano:
  Database of p53 gene somatic mutations in human tumors and cell lines: updated compilation and future prospects. 151-157
  
• Bruce Gottlieb, Mark Trifiro, Rose Lumbroso, Leonard Pinsky: The androgen receptor gene mutations database. 158-162
• Elisabeth Martinez, David D. Moore, Evan Keller, David Pearce, Vincent Robinson, Paul N. MacDonald, S. Stoney Simons Jr., Eddie Sanchez, Mark Danielsen:
  The Nuclear Receptor Resource Project. 163-165
  
• Mathilde Varret, Jean-Pierre Rabès, Gwenaëlle Collod-Béroud, Claudine Junien, Catherine Boileau, Christophe Béroud:
  Software and database for the analysis of mutations in the human LDL receptor gene. 172-180
  
• Raymond Dalgleish:
  The human type I collagen mutation database. 181-187
  
• Kathleen L. Triman, Brian J. Adams:
  Expansion of the 16S and 23S ribosomal RNA mutation databases (16SMDB and 23SMDB). 188-191
  
• Franklin Hutchinson, J. Edward Donnellan Jr.:
  A mutation spectra database for bacterial and mammalian genes. 192-195
  
• Andreas M. Kogelnik, Marie T. Lott, Michael D. Brown, Shamkant B. Navathe, Douglas C. Wallace:
  MITOMAP: an update on the status of the human mitochondrial genome database. 196-199
  
• D. Calo, A. Depascali, D. Sasanelli, F. Tanzariello, Mila Tommaseo Ponzetta, Cecilia Saccone, Marcella Attimonelli:
  MmtDB: a Metazoa mitochondrial DNA variants database. 200-205
  
• Véronique Giudicelli, Denys Chaume, Julia G. Bodmer, Werner Müller, Chantal Busin, Steven G. E. Marsh, Ronald Bontrop, Marc Lemaitre, Ansar Malik, Marie-Paule Lefranc:
  IMGT, the international ImMunoGeneTics database. 206-211
  
• Terri K. Attwood, Michael E. Beck, Alan J. Bleasby, Kirill Degtyarenko, A. D. Michie, D. J. Parry-Smith:
  Novel developments with the PRINTS protein fingerprint database. 212-217
  
• Amos Bairoch, Philipp Bucher, Kay Hofmann:
  The PROSITE database, its status in 1997. 217-221
  
• Jorja G. Henikoff, Shmuel Pietrokovski, Steven Henikoff:
  Recent enhancements to the Blocks Database servers. 222-225
  
• Reinhard Schneider, Antoine de Daruvar, Chris Sander:
  The HSSP database of protein structure-sequence alignments. 226-230
  
• Liisa Holm, Chris Sander:
  Dali/FSSP classification of three-dimensional protein folds. 231-234
  
• Martin Reczko, Dimitris A. Karras, Henrik Bohr:
  An update of the DEF database of protein fold class predictions. 235
  
• Tim J. P. Hubbard, Alexey G. Murzin, Steven E. Brenner, Cyrus Chothia:
  SCOP: a structural classification of proteins database. 236-239
  
• Péter Fábián, János Murvai, Zsolt Hátsági, Kristian Vlahovicek, Hedvig Hegyi, Sándor Pongor:
  The SBASE protein domain library, release 5.0: a collection of annotated protein sequence segments. 240-243
  
• Yasukazu Nakamura, Takashi Gojobori, Toshimichi Ikemura:
  Codon usage tabulated from the international DNA sequence databases. 244-245
  
• Mark E. Dalphin, Chris M. Brown, Peter A. Stockwell, Warren Tate:
  The translational signal database, TransTerm: more organisms, complete genomes. 246-247
  
• Richard J. Roberts, Dana Macelis:
  REBASE-restriction enzymes and methylases. 248-262
  
• James W. Brown:
  The ribonuclease P database. 263-264
  
• Edgar Wingender, Alexander E. Kel, Olga V. Kel-Margoulis, Holger Karas, T. Heinemeyer, P. Dietze, R. Knüppel, Aida G. Romashchenko, Nikolay A. Kolchanov:
  TRANSFAC, TRRD and COMPEL: towards a federated database system on transcriptional regulation. 265-268
  
• Vladimir Brusic, George B. Rudy, Anthony P. Kyne, Leonard C. Harrison:
  MHCPEP, a database of MHC-binding peptides: update 1996. 269-271
  
• Andreas D. Baxevanis, David Landsman:
  Histone and histone fold sequences and structures: a database. 272-273
  
• Péter Fábián, Kirill Degtyarenko:
  The directory of P450-containing systems in 1996. 274-277
  
• Jan E. Hansen, Ole Lund, Kristoffer Rapacki, Søren Brunak:
  O-GLYCBASE version 2.0: a revised database of O-glycosylated proteins. 278-282
  

Volume 25, Number 13, July 1997

• Brooke Lustig, Shalini Arora, Robert L. Jernigan:
  RNA base-amino acid interaction strengths derived from structures and sequences. 2562-2565
  
• Ju-Gyeong Kang, Mi-Young Hahn, Akira Ishihama, Jung-Hye Roe:
  Identification of sigma factors for growth phase-related promoter selectivity of RNA polymerases from Streptomyces coelicolor A3(2). 2566-2573
  
• A. Slama-Schwok, F. Peronnet, E. Hantz-Brachet, E. Taillandier, M.-P. Teulade-Fichou, J.-P. Vigneron, M. Best-Belpomme, J.-M. Lehn:
  A macrocyclic bis-acridine shifts the equilibrium from duplexes towards DNA hairpins. 2574-2581
  
• Joseph D. Ng, Yurii G. Kuznetsov, Alexander J. Malkin, Gérard Keith, Richard Giegé, Alexander McPherson:
  Visualization of RNA crystal growth by atomic force microscopy. 2582-2588
  
• Eric E. Turner, Jerry M. Rhee, Lawrence T. Feldman:
  The POU-domain factor Brn-3.0 recognizes characteristic sites in the herpes simplex virus genome. 2589-2594
  
• Nam W. Kim, Fred Wu:
  Advances in quantification and characterization of telomerase activity by the telomeric repeat amplification protocol (TRAP). 2595-2597
  
• Oliver D. von Stein, Wolf-Gerolf Thies, Martin Hofmann:
  A high throughput screening for rarely transcribed differentially expressed genes. 2598-2602
  
• Xuejun Huang, Francisco J. Lopez de Saro, John D. Helmann:
  sigma factor mutations affecting the sequence-selective interaction of RNA polymerase with -10 region single-stranded DNA. 2603-2609
  
• Monique Turmel, Christian Otis, Vincent Côté, Claude Lemieux:
  Evolutionarily conserved and functionally important residues in the I- CeuI homing endonuclease. 2610-2619
  
• Louise E. Bird, Kjell Håkansson, Hu Pan, Dale B. Wigley:
  Characterization and crystallization of the helicase domain of bacteriophage T7 gene 4 protein. 2620-2626
  
• Maria R. Conte, Graeme L. Conn, Tom Brown, Andrew N. Lane:
  Conformational properties and thermodynamics of the RNA duplex r(CGCAAAUUUGCG)2: comparison with the DNA analogue d(CGCAAATTTGCG)2. 2627-2634
  
• Toru Matsukawa, Hiroki Kawasaki, Makoto Tanaka, Yoshiki Ohba:
  Analysis of chromatin structure of rat alpha1-acid glycoprotein gene; changes in DNase I hypersensitive sites after thyroid hormone, glucocorticoid hormone and turpentine oil treatment. 2635-2639
  
• Tomoko Kubori, Nobuo Shimamoto:
  Physical interference between escherichia coli RNA polymerase molecules transcribing in tandem enhances abortive synthesis and misincorporation. 2640-2647
  
• Lyuba Benimetskaya, Myriam Berton, Alexander Kolbanovsky, Simon Benimetsky, C. A. Stein:
  Formation of a G-tetrad and higher order structures correlates with biological activity of the RelA (NF-kappaB p65) 'antisense' oligodeoxynucleotide. 2648-2656
  
• Irina Afonina, Maris Zivarts, Igor Kutyavin, Eugeny Lukhtanov, Howard Gamper, Rich B. Meyer:
  Efficient priming of PCR with short oligonucleotides conjugated to a minor groove binder. 2657-2660
  
• Brian D. Hendrich, Robert M. Plenge, Huntington F. Willard:
  Identification and characterization of the human XIST gene promoter: implications for models of X chromosome inactivation. 2661-2671
  
• Raymond A. Petryshyn, Andrea G. Ferrenz, Jinhe Li:
  Characterization and mapping of the double-stranded regions involved in activation of PKR within a cellular RNA from 3T3-F442A cells. 2672-2678
  
• David A. Wright, Sei-Kyoung Park, Dongying Wu, Gregory J. Phillips, Steven R. Rodermel, Daniel F. Voytas:
  Recovery of YAC-end sequences through complementation of an Escherichia coli pyrF mutation. 2679-2680
  
• Michael J. O'Neill, Andrew H. Sinclair:
  Isolation of rare transcripts by representational difference analysis. 2681-2682
  

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