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ORCIDSource Code for Biology and Medicine, Volume 8
Volume 8, 2013
- Guy N. Brock
, Partha Mukhopadhyay, Vasyl Pihur, Cynthia Webb, Robert M. Greene, M. Michele Pisano:
MmPalateMiRNA, an R package compendium illustrating analysis of miRNA microarray data. 1 - Grzegorz Zycinski, Annalisa Barla, Margherita Squillario, Tiziana Sanavia, Barbara Di Camillo, Alessandro Verri:
Knowledge Driven Variable Selection (KDVS) - a new approach to enrichment analysis of gene signatures obtained from high-throughput data. 2 - Simon Barkow-Oesterreicher, Can Türker, Christian Panse:
FCC-An automated rule-based processing tool for life science data. 3 - Massimiliano Orsini, Simone Carcangiu:
BlaSTorage: a fast package to parse, manage and store BLAST results. 4 - Annick Nembot-Simo, Jinko Graham, Brad McNeney:
CrypticIBDcheck: an R package for checking cryptic relatedness in nominally unrelated individuals. 5 - Akiko Izawa, Jun Sese:
A tool for the coordinate transformation of next-generation sequencing reads for comparative genomics and transcriptomics. 6 - Karthik Ram:
git can facilitate greater reproducibility and increased transparency in science. 7 - Mehdi Pirooznia, Fayaz Seifuddin, Fernando S. Goes, Jeffrey T. Leek, Peter P. Zandi:
SVAw - a web-based application tool for automated surrogate variable analysis of gene expression studies. 8 - Andrew James Perry, Bosco K. Ho:
Inmembrane, a bioinformatic workflow for annotation of bacterial cell-surface proteomes. 9 - Yifeng Li, Alioune Ngom:
The non-negative matrix factorization toolbox for biological data mining. 10 - Max Ortiz-Catalan, Rickard Brånemark, Bo Håkansson:
BioPatRec: A modular research platform for the control of artificial limbs based on pattern recognition algorithms. 11 - Justin Sick, Eric Bray, Amade Bregy, W. Dalton Dietrich, Helen M. Bramlett, Thomas Sick:
EEGgui: a program used to detect electroencephalogram anomalies after traumatic brain injury. 12 - Manuel Corpas:
Crowdsourcing the Corpasome. 13 - Josef Spidlen, Aaron Barsky, Karin Breuer, Peter Carr, Marc-Danie Nazaire, Barbara A. Hill, Yu Qian, Ted Liefeld, Michael Reich, Jill P. Mesirov, Peter Wilkinson, Richard H. Scheuermann, Rafick-Pierre Sekaly, Ryan Remy Brinkman:
GenePattern Flow Cytometry Suite. 14 - Mathilde Bourbin, Yann Le Du, Laurent Binet, Didier Gourier:
Implementing a new EPR lineshape parameter for organic radicals in carbonaceous matter. 15 - Erlend Hodneland, Tanja Kögel, Dominik Michael Frei, Hans-Hermann Gerdes, Arvid Lundervold:
CellSegm - a MATLAB toolbox for high-throughput 3D cell segmentation. 16 - Hidetoshi Itaya, Kazuki Oshita, Kazuharu Arakawa, Masaru Tomita:
GEMBASSY: an EMBOSS associated software package for comprehensive genome analyses. 17 - Yuri Matsuzaki, Nobuyuki Uchikoga, Masahito Ohue, Takehiro Shimoda, Toshiyuki Sato, Takashi Ishida, Yutaka Akiyama:
MEGADOCK 3.0: a high-performance protein-protein interaction prediction software using hybrid parallel computing for petascale supercomputing environments. 18 - Luke J. Whitehorn, Frances M. Hawkes, Ian A. N. Dublon:
Superplot3d: an open source GUI tool for 3d trajectory visualisation and elementary processing. 19 - Gert Wollny, Peter Kellman, María J. Ledesma-Carbayo, Matthew M. Skinner, Jean-Jaques Hublin, Thomas Hierl:
MIA - A free and open source software for gray scale medical image analysis. 20 - Matthew I. Bellgard, Christophe Béroud, Kay Parkinson, Tess Harris, Ségolène Aymé, Gareth Baynam, Tarun Weeramanthri, Hugh J. S. Dawkins, Adam Hunter:
Dispelling myths about rare disease registry system development. 21 - Andreas Dander, Laurin A. J. Mueller, Ralf Gallasch, Stephan Pabinger, Frank Emmert-Streib, Armin Graber, Matthias Dehmer:
[COMMODE] a large-scale database of molecular descriptors using compounds from PubChem. 22 - Genivaldo Gueiros Z. Silva, Bas E. Dutilh, T. David Matthews, Keri Elkins, Robert Schmieder, Elizabeth A. Dinsdale, Robert A. Edwards:
Combining de novo and reference-guided assembly with scaffold_builder. 23
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