BibTeX records: Rolf Apweiler

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@article{DBLP:journals/nar/CantelliBBPMIHF22,
  author       = {Gaia Cantelli and
                  Alex Bateman and
                  Cath Brooksbank and
                  Anton I. Petrov and
                  Rahuman S. Malik{-}Sheriff and
                  Michele Ide{-}Smith and
                  Henning Hermjakob and
                  Paul Flicek and
                  Rolf Apweiler and
                  Ewan Birney and
                  Johanna R. McEntyre},
  title        = {The European Bioinformatics Institute {(EMBL-EBI)} in 2021},
  journal      = {Nucleic Acids Res.},
  volume       = {50},
  number       = {{D1}},
  pages        = {11--19},
  year         = {2022},
  url          = {https://doi.org/10.1093/nar/gkab1127},
  doi          = {10.1093/NAR/GKAB1127},
  timestamp    = {Wed, 07 Dec 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/nar/CantelliBBPMIHF22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CantelliCBMFMBA21,
  author       = {Gaia Cantelli and
                  Guy Cochrane and
                  Cath Brooksbank and
                  Ellen M. McDonagh and
                  Paul Flicek and
                  Johanna R. McEntyre and
                  Ewan Birney and
                  Rolf Apweiler},
  title        = {The European Bioinformatics Institute: empowering cooperation in response
                  to a global health crisis},
  journal      = {Nucleic Acids Res.},
  volume       = {49},
  number       = {Database-Issue},
  pages        = {D29--D37},
  year         = {2021},
  url          = {https://doi.org/10.1093/nar/gkaa1077},
  doi          = {10.1093/NAR/GKAA1077},
  timestamp    = {Tue, 01 Jun 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/CantelliCBMFMBA21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HarrisonLRAABCF21,
  author       = {Peter W. Harrison and
                  Rodrigo Lopez and
                  Nadim Rahman and
                  Stefan Gutnick Allen and
                  Raheela Aslam and
                  Nicola Buso and
                  Carla A. Cummins and
                  Yasmin Fathy and
                  Eloy Felix and
                  Mihai Glont and
                  Suran Jayathilaka and
                  Sandeep Kadam and
                  Manish Kumar and
                  Katharina B. Lauer and
                  Geetika Malhotra and
                  Abayomi Mosaku and
                  Ossama Edbali and
                  Young Mi Park and
                  Andrew Parton and
                  Matt Pearce and
                  Jose Francisco Estrada pena and
                  Joseph Rossetto and
                  Craig Russell and
                  Sandeep Selvakumar and
                  X{\`{e}}nia P{\'{e}}rez Sitj{\`{a}} and
                  Alexey Sokolov and
                  Ross Thorne and
                  Marianna Ventouratou and
                  Peter Walter and
                  Galabina Yordanova and
                  Amonida Zadissa and
                  Guy Cochrane and
                  Niklas Blomberg and
                  Rolf Apweiler},
  title        = {The {COVID-19} Data Portal: accelerating SARS-CoV-2 and {COVID-19}
                  research through rapid open access data sharing},
  journal      = {Nucleic Acids Res.},
  volume       = {49},
  number       = {Webserver-Issue},
  pages        = {619--623},
  year         = {2021},
  url          = {https://doi.org/10.1093/nar/gkab417},
  doi          = {10.1093/NAR/GKAB417},
  timestamp    = {Thu, 05 Jan 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/nar/HarrisonLRAABCF21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CookSCBA20,
  author       = {Charles E. Cook and
                  Oana Stroe and
                  Guy Cochrane and
                  Ewan Birney and
                  Rolf Apweiler},
  title        = {The European Bioinformatics Institute in 2020: building a global infrastructure
                  of interconnected data resources for the life sciences},
  journal      = {Nucleic Acids Res.},
  volume       = {48},
  number       = {Database-Issue},
  pages        = {D17--D23},
  year         = {2020},
  url          = {https://doi.org/10.1093/nar/gkz1033},
  doi          = {10.1093/NAR/GKZ1033},
  timestamp    = {Tue, 01 Jun 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/CookSCBA20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CookLSCBBA19,
  author       = {Charles E. Cook and
                  Rodrigo Lopez and
                  Oana Stroe and
                  Guy Cochrane and
                  Cath Brooksbank and
                  Ewan Birney and
                  Rolf Apweiler},
  title        = {The European Bioinformatics Institute in 2018: tools, infrastructure
                  and training},
  journal      = {Nucleic Acids Res.},
  volume       = {47},
  number       = {Database-Issue},
  pages        = {D15--D22},
  year         = {2019},
  url          = {https://doi.org/10.1093/nar/gky1124},
  doi          = {10.1093/NAR/GKY1124},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/CookLSCBBA19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CookBCAB18,
  author       = {Charles E. Cook and
                  Mary Todd Bergman and
                  Guy Cochrane and
                  Rolf Apweiler and
                  Ewan Birney},
  title        = {The European Bioinformatics Institute in 2017: data coordination and
                  integration},
  journal      = {Nucleic Acids Res.},
  volume       = {46},
  number       = {Database-Issue},
  pages        = {D21--D29},
  year         = {2018},
  url          = {https://doi.org/10.1093/nar/gkx1154},
  doi          = {10.1093/NAR/GKX1154},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/CookBCAB18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CookBFCBA16,
  author       = {Charles E. Cook and
                  Mary Todd Bergman and
                  Robert D. Finn and
                  Guy Cochrane and
                  Ewan Birney and
                  Rolf Apweiler},
  title        = {The European Bioinformatics Institute in 2016: Data growth and integration},
  journal      = {Nucleic Acids Res.},
  volume       = {44},
  number       = {Database-Issue},
  pages        = {20--26},
  year         = {2016},
  url          = {https://doi.org/10.1093/nar/gkv1352},
  doi          = {10.1093/NAR/GKV1352},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/CookBFCBA16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BrooksbankBABT14,
  author       = {Catherine Brooksbank and
                  Mary Todd Bergman and
                  Rolf Apweiler and
                  Ewan Birney and
                  Janet M. Thornton},
  title        = {The European Bioinformatics Institute's data resources 2014},
  journal      = {Nucleic Acids Res.},
  volume       = {42},
  number       = {Database-Issue},
  pages        = {18--25},
  year         = {2014},
  url          = {https://doi.org/10.1093/nar/gkt1206},
  doi          = {10.1093/NAR/GKT1206},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/BrooksbankBABT14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/Mutowo-MeullenetHDASMOA13,
  author       = {Prudence Mutowo{-}Meullenet and
                  Rachael P. Huntley and
                  Emily C. Dimmer and
                  Yasmin Alam{-}Faruque and
                  Tony Sawford and
                  Maria Jesus Martin and
                  Claire O'Donovan and
                  Rolf Apweiler},
  title        = {Use of Gene Ontology Annotation to understand the peroxisome proteome
                  in humans},
  journal      = {Database J. Biol. Databases Curation},
  volume       = {2013},
  year         = {2013},
  url          = {https://doi.org/10.1093/database/bas062},
  doi          = {10.1093/DATABASE/BAS062},
  timestamp    = {Thu, 13 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biodb/Mutowo-MeullenetHDASMOA13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HunterJM12,
  author       = {Sarah Hunter and
                  Philip Jones and
                  Alex L. Mitchell and
                  Rolf Apweiler and
                  Teresa K. Attwood and
                  Alex Bateman and
                  Thomas Bernard and
                  David Binns and
                  Peer Bork and
                  Sarah W. Burge and
                  Edouard De Castro and
                  Penny C. Coggill and
                  Matthew Corbett and
                  Ujjwal Das and
                  Louise C. Daugherty and
                  Lauranne Duquenne and
                  Robert D. Finn and
                  Matthew Fraser and
                  Julian Gough and
                  Daniel H. Haft and
                  Nicolas Hulo and
                  Daniel Kahn and
                  Elizabeth Kelly and
                  Ivica Letunic and
                  David Lonsdale and
                  Rodrigo Lopez and
                  Martin Madera and
                  John Maslen and
                  Craig McAnulla and
                  Jennifer McDowall and
                  Conor McMenamin and
                  Huaiyu Mi and
                  Prudence Mutowo{-}Meullenet and
                  Nicola J. Mulder and
                  Darren A. Natale and
                  Christine A. Orengo and
                  Sebastien Pesseat and
                  Marco Punta and
                  Antony F. Quinn and
                  Catherine Rivoire and
                  Amaia Sangrador{-}Vegas and
                  Jeremy D. Selengut and
                  Christian J. A. Sigrist and
                  Maxim Scheremetjew and
                  John G. Tate and
                  Manjulapramila Thimmajanarthanan and
                  Paul D. Thomas and
                  Cathy H. Wu and
                  Corin Yeats and
                  Siew{-}Yit Yong},
  title        = {InterPro in 2011: new developments in the family and domain prediction
                  database},
  journal      = {Nucleic Acids Res.},
  volume       = {40},
  number       = {Database-Issue},
  pages        = {306--312},
  year         = {2012},
  url          = {https://doi.org/10.1093/nar/gkr948},
  doi          = {10.1093/NAR/GKR948},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/HunterJM12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/DimmerHA12,
  author       = {Emily C. Dimmer and
                  Rachael P. Huntley and
                  Yasmin Alam{-}Faruque and
                  Tony Sawford and
                  Claire O'Donovan and
                  Maria Jesus Martin and
                  Benoit Bely and
                  Paul Browne and
                  Wei Mun Chan and
                  Ruth Y. Eberhardt and
                  Michael Gardner and
                  Kati Laiho and
                  Duncan Legge and
                  Michele Magrane and
                  Klemens Pichler and
                  Diego Poggioli and
                  Harminder Sehra and
                  Andrea H. Auchincloss and
                  Kristian B. Axelsen and
                  Marie{-}Claude Blatter and
                  Emmanuel Boutet and
                  Silvia Braconi{-}Quintaje and
                  Lionel Breuza and
                  Alan J. Bridge and
                  Elisabeth Coudert and
                  Anne Estreicher and
                  Maria Livia Famiglietti and
                  Serenella Ferro{-}Rojas and
                  Marc Feuermann and
                  Arnaud Gos and
                  Nadine Gruaz{-}Gumowski and
                  Ursula Hinz and
                  Chantal Hulo and
                  Janet James and
                  Silvia Jimenez and
                  Florence Jungo and
                  Guillaume Keller and
                  Phillippe Lemercier and
                  Damien Lieberherr and
                  Patrick Masson and
                  Madelaine Moinat and
                  Ivo Pedruzzi and
                  Sylvain Poux and
                  Catherine Rivoire and
                  Bernd Roechert and
                  Michel Schneider and
                  Andre Stutz and
                  Shyamala Sundaram and
                  Michael Tognolli and
                  Lydie Bougueleret and
                  Ghislaine Argoud{-}Puy and
                  Isabelle Cusin and
                  Paula Duek{-}Roggli and
                  Ioannis Xenarios and
                  Rolf Apweiler},
  title        = {The UniProt-GO Annotation database in 2011},
  journal      = {Nucleic Acids Res.},
  volume       = {40},
  number       = {Database-Issue},
  pages        = {565--570},
  year         = {2012},
  url          = {https://doi.org/10.1093/nar/gkr1048},
  doi          = {10.1093/NAR/GKR1048},
  timestamp    = {Fri, 15 Mar 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/nar/DimmerHA12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/FreitasWA10,
  author       = {Alex Alves Freitas and
                  Daniela Wieser and
                  Rolf Apweiler},
  title        = {On the Importance of Comprehensible Classification Models for Protein
                  Function Prediction},
  journal      = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
  volume       = {7},
  number       = {1},
  pages        = {172--182},
  year         = {2010},
  url          = {https://doi.org/10.1109/TCBB.2008.47},
  doi          = {10.1109/TCBB.2008.47},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tcbb/FreitasWA10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1011-0810,
  author       = {Nell Sedransk and
                  Lawrence H. Cox and
                  Deborah Nolan and
                  Keith Soper and
                  Clifford H. Spiegelman and
                  Linda J. Young and
                  Katrina L. Kelner and
                  Robert A. Moffitt and
                  Ani Thakar and
                  M. Jordan Raddick and
                  Edward J. Ungvarsky and
                  Richard W. Carlson and
                  Rolf Apweiler},
  title        = {Make Research Data Public?---Not Always so Simple: {A} Dialogue for
                  Statisticians and Science Editors},
  journal      = {CoRR},
  volume       = {abs/1011.0810},
  year         = {2010},
  url          = {http://arxiv.org/abs/1011.0810},
  eprinttype    = {arXiv},
  eprint       = {1011.0810},
  timestamp    = {Wed, 03 Feb 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-1011-0810.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/HuntleyBDBOA09,
  author       = {Rachael P. Huntley and
                  David Binns and
                  Emily Dimmer and
                  Daniel Barrell and
                  Claire O'Donovan and
                  Rolf Apweiler},
  title        = {QuickGO: a user tutorial for the web-based Gene Ontology browser},
  journal      = {Database J. Biol. Databases Curation},
  volume       = {2009},
  year         = {2009},
  url          = {https://doi.org/10.1093/database/bap010},
  doi          = {10.1093/DATABASE/BAP010},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biodb/HuntleyBDBOA09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YeSLAN09,
  author       = {Kai Ye and
                  Marcel H. Schulz and
                  Quan Long and
                  Rolf Apweiler and
                  Zemin Ning},
  title        = {Pindel: a pattern growth approach to detect break points of large
                  deletions and medium sized insertions from paired-end short reads},
  journal      = {Bioinform.},
  volume       = {25},
  number       = {21},
  pages        = {2865--2871},
  year         = {2009},
  url          = {https://doi.org/10.1093/bioinformatics/btp394},
  doi          = {10.1093/BIOINFORMATICS/BTP394},
  timestamp    = {Wed, 27 Apr 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/YeSLAN09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BinnsDHBOA09,
  author       = {David Binns and
                  Emily Dimmer and
                  Rachael P. Huntley and
                  Daniel Barrell and
                  Claire O'Donovan and
                  Rolf Apweiler},
  title        = {QuickGO: a web-based tool for Gene Ontology searching},
  journal      = {Bioinform.},
  volume       = {25},
  number       = {22},
  pages        = {3045--3046},
  year         = {2009},
  url          = {https://doi.org/10.1093/bioinformatics/btp536},
  doi          = {10.1093/BIOINFORMATICS/BTP536},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BinnsDHBOA09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HunterAABBBBDDDFGHHKKLLLLMMMMMMMNOQSSTTVWWY09,
  author       = {Sarah Hunter and
                  Rolf Apweiler and
                  Teresa K. Attwood and
                  Amos Bairoch and
                  Alex Bateman and
                  David Binns and
                  Peer Bork and
                  Ujjwal Das and
                  Louise C. Daugherty and
                  Lauranne Duquenne and
                  Robert D. Finn and
                  Julian Gough and
                  Daniel H. Haft and
                  Nicolas Hulo and
                  Daniel Kahn and
                  Elizabeth Kelly and
                  Aur{\'{e}}lie Laugraud and
                  Ivica Letunic and
                  David Lonsdale and
                  Rodrigo Lopez and
                  Martin Madera and
                  John Maslen and
                  Craig McAnulla and
                  Jennifer McDowall and
                  Jaina Mistry and
                  Alex L. Mitchell and
                  Nicola J. Mulder and
                  Darren A. Natale and
                  Christine A. Orengo and
                  Antony F. Quinn and
                  Jeremy D. Selengut and
                  Christian J. A. Sigrist and
                  Manjula Thimma and
                  Paul D. Thomas and
                  Franck Valentin and
                  Derek Wilson and
                  Cathy H. Wu and
                  Corin Yeats},
  title        = {InterPro: the integrative protein signature database},
  journal      = {Nucleic Acids Res.},
  volume       = {37},
  number       = {Database-Issue},
  pages        = {211--215},
  year         = {2009},
  url          = {https://doi.org/10.1093/nar/gkn785},
  doi          = {10.1093/NAR/GKN785},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/HunterAABBBBDDDFGHHKKLLLLMMMMMMMNOQSSTTVWWY09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BarrellDHBOA09,
  author       = {Daniel Barrell and
                  Emily Dimmer and
                  Rachael P. Huntley and
                  David Binns and
                  Claire O'Donovan and
                  Rolf Apweiler},
  title        = {The {GOA} database in 2009 - an integrated Gene Ontology Annotation
                  resource},
  journal      = {Nucleic Acids Res.},
  volume       = {37},
  number       = {Database-Issue},
  pages        = {396--403},
  year         = {2009},
  url          = {https://doi.org/10.1093/nar/gkn803},
  doi          = {10.1093/NAR/GKN803},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/BarrellDHBOA09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/igi/09/CoutoSLDCA09,
  author       = {Francisco M. Couto and
                  M{\'{a}}rio J. Silva and
                  Vivian Lee and
                  Emily Dimmer and
                  Evelyn Camon and
                  Rolf Apweiler},
  editor       = {Violaine Prince and
                  Mathieu Roche},
  title        = {Verification of Uncurated Protein Annotations},
  booktitle    = {Information Retrieval in Biomedicine - Natural Language Processing
                  for Knowledge Integration},
  pages        = {301--314},
  publisher    = {{IGI} Global},
  year         = {2009},
  url          = {https://doi.org/10.4018/978-1-60566-274-9.ch016},
  doi          = {10.4018/978-1-60566-274-9.CH016},
  timestamp    = {Mon, 16 Sep 2019 14:43:09 +0200},
  biburl       = {https://dblp.org/rec/books/igi/09/CoutoSLDCA09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PatientWKKMA08,
  author       = {Samuel Patient and
                  Daniela Wieser and
                  Michael Kleen and
                  Ernst Kretschmann and
                  Maria Jesus Martin and
                  Rolf Apweiler},
  title        = {UniProtJAPI: a remote {API} for accessing UniProt data},
  journal      = {Bioinform.},
  volume       = {24},
  number       = {10},
  pages        = {1321--1322},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn122},
  doi          = {10.1093/BIOINFORMATICS/BTN122},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/PatientWKKMA08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CochraneAAABBBBBBCCDEFHJKLLLLLLMMNPRSVWZAHB08,
  author       = {Guy Cochrane and
                  Ruth Akhtar and
                  Philippe Aldebert and
                  Nicola Althorpe and
                  Alastair Baldwin and
                  Kirsty Bates and
                  Sumit Bhattacharyya and
                  James K. Bonfield and
                  Lawrence Bower and
                  Paul Browne and
                  Matias Castro and
                  Tony Cox and
                  Fehmi Demiralp and
                  Ruth Y. Eberhardt and
                  Nadeem Faruque and
                  Gemma Hoad and
                  Mikyung Jang and
                  Tamara Kulikova and
                  Alberto Labarga and
                  Rasko Leinonen and
                  Steven Leonard and
                  Quan Lin and
                  Rodrigo Lopez and
                  Dariusz Lorenc and
                  Hamish McWilliam and
                  Gaurab Mukherjee and
                  Francesco Nardone and
                  Sheila Plaister and
                  Stephen Robinson and
                  Siamak Sobhany and
                  Robert Vaughan and
                  Dan Wu and
                  Weimin Zhu and
                  Rolf Apweiler and
                  Tim J. P. Hubbard and
                  Ewan Birney},
  title        = {Priorities for nucleotide trace, sequence and annotation data capture
                  at the Ensembl Trace Archive and the {EMBL} Nucleotide Sequence Database},
  journal      = {Nucleic Acids Res.},
  volume       = {36},
  number       = {Database-Issue},
  pages        = {5--12},
  year         = {2008},
  url          = {https://doi.org/10.1093/nar/gkm1018},
  doi          = {10.1093/NAR/GKM1018},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/CochraneAAABBBBBBCCDEFHJKLLLLLLMMNPRSVWZAHB08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CoteJMAH08,
  author       = {Richard G. C{\^{o}}t{\'{e}} and
                  Philip Jones and
                  Lennart Martens and
                  Rolf Apweiler and
                  Henning Hermjakob},
  title        = {The Ontology Lookup Service: more data and better tools for controlled
                  vocabulary queries},
  journal      = {Nucleic Acids Res.},
  volume       = {36},
  number       = {Web-Server-Issue},
  pages        = {372--376},
  year         = {2008},
  url          = {https://doi.org/10.1093/nar/gkn252},
  doi          = {10.1093/NAR/GKN252},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/CoteJMAH08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CoteJMKRLLAH07,
  author       = {Richard G. C{\^{o}}t{\'{e}} and
                  Philip Jones and
                  Lennart Martens and
                  Samuel Kerrien and
                  Florian Reisinger and
                  Quan Lin and
                  Rasko Leinonen and
                  Rolf Apweiler and
                  Henning Hermjakob},
  title        = {The Protein Identifier Cross-Referencing {(PICR)} service: reconciling
                  protein identifiers across multiple source databases},
  journal      = {{BMC} Bioinform.},
  volume       = {8},
  year         = {2007},
  url          = {https://doi.org/10.1186/1471-2105-8-401},
  doi          = {10.1186/1471-2105-8-401},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/CoteJMKRLLAH07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KulikovaAAAABBBBBCCDEFHKLLLLLLMMNPPSSVWZA07,
  author       = {Tamara Kulikova and
                  Ruth Akhtar and
                  Philippe Aldebert and
                  Nicola Althorpe and
                  Mikael Andersson and
                  Alastair Baldwin and
                  Kirsty Bates and
                  Sumit Bhattacharyya and
                  Lawrence Bower and
                  Paul Browne and
                  Matias Castro and
                  Guy Cochrane and
                  Karyn Duggan and
                  Ruth Y. Eberhardt and
                  Nadeem Faruque and
                  Gemma Hoad and
                  Carola Kanz and
                  Charles Lee and
                  Rasko Leinonen and
                  Quan Lin and
                  Vincent Lombard and
                  Rodrigo Lopez and
                  Dariusz Lorenc and
                  Hamish McWilliam and
                  Gaurab Mukherjee and
                  Francesco Nardone and
                  Maria Pilar Garcia Pastor and
                  Sheila Plaister and
                  Siamak Sobhany and
                  Peter Stoehr and
                  Robert Vaughan and
                  Dan Wu and
                  Weimin Zhu and
                  Rolf Apweiler},
  title        = {{EMBL} Nucleotide Sequence Database in 2006},
  journal      = {Nucleic Acids Res.},
  volume       = {35},
  number       = {Database-Issue},
  pages        = {16--20},
  year         = {2007},
  url          = {https://doi.org/10.1093/nar/gkl913},
  doi          = {10.1093/NAR/GKL913},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/KulikovaAAAABBBBBCCDEFHKLLLLLLMMNPPSSVWZA07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MulderAA07,
  author       = {Nicola J. Mulder and
                  Rolf Apweiler and
                  Teresa K. Attwood and
                  Amos Bairoch and
                  Alex Bateman and
                  David Binns and
                  Peer Bork and
                  Virginie Buillard and
                  Lorenzo Cerutti and
                  Richard R. Copley and
                  Emmanuel Courcelle and
                  Ujjwal Das and
                  Louise C. Daugherty and
                  Mark Dibley and
                  Robert D. Finn and
                  Wolfgang Fleischmann and
                  Julian Gough and
                  Daniel H. Haft and
                  Nicolas Hulo and
                  Sarah Hunter and
                  Daniel Kahn and
                  Alexander Kanapin and
                  Anish Kejariwal and
                  Alberto Labarga and
                  Petra S. Langendijk{-}Genevaux and
                  David Lonsdale and
                  Rodrigo Lopez and
                  Ivica Letunic and
                  Martin Madera and
                  John Maslen and
                  Craig McAnulla and
                  Jennifer McDowall and
                  Jaina Mistry and
                  Alex L. Mitchell and
                  Anastasia N. Nikolskaya and
                  Sandra E. Orchard and
                  Christine A. Orengo and
                  Robert Petryszak and
                  Jeremy D. Selengut and
                  Christian J. A. Sigrist and
                  Paul D. Thomas and
                  Franck Valentin and
                  Derek Wilson and
                  Cathy H. Wu and
                  Corin Yeats},
  title        = {New developments in the InterPro database},
  journal      = {Nucleic Acids Res.},
  volume       = {35},
  number       = {Database-Issue},
  pages        = {224--228},
  year         = {2007},
  url          = {https://doi.org/10.1093/nar/gkl841},
  doi          = {10.1093/NAR/GKL841},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/MulderAA07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KerrienAABBDDFFHKKLLLMORRRTZAH07,
  author       = {Samuel Kerrien and
                  Yasmin Alam{-}Faruque and
                  Bruno Aranda and
                  I. Bancarz and
                  Alan J. Bridge and
                  C. Derow and
                  Emily Dimmer and
                  Marc Feuermann and
                  A. Friedrichsen and
                  Rachael P. Huntley and
                  C. Kohler and
                  Jyoti Khadake and
                  C. Leroy and
                  A. Liban and
                  C. Lieftink and
                  Luisa Montecchi{-}Palazzi and
                  Sandra E. Orchard and
                  Judith E. Risse and
                  Karine Robbe and
                  Bernd Roechert and
                  David Thorneycroft and
                  Y. Zhang and
                  Rolf Apweiler and
                  Henning Hermjakob},
  title        = {IntAct - open source resource for molecular interaction data},
  journal      = {Nucleic Acids Res.},
  volume       = {35},
  number       = {Database-Issue},
  pages        = {561--565},
  year         = {2007},
  url          = {https://doi.org/10.1093/nar/gkl958},
  doi          = {10.1093/NAR/GKL958},
  timestamp    = {Fri, 15 Mar 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/nar/KerrienAABBDDFFHKKLLLMORRRTZAH07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/KlieMVCJAHH07,
  author       = {Sebastian Klie and
                  Lennart Martens and
                  Juan Antonio Vizca{\'{\i}}no and
                  Richard G. C{\^{o}}t{\'{e}} and
                  Philip Jones and
                  Rolf Apweiler and
                  Alexander Hinneburg and
                  Henning Hermjakob},
  editor       = {Claudia Falter and
                  Alexander Schliep and
                  Joachim Selbig and
                  Martin Vingron and
                  Dirk Walther},
  title        = {An Application of Latent Topic Document Analysis to Large-Scale Proteomics
                  Databases},
  booktitle    = {Proceedings of the German Conference on Bioinformatics, {GCB} 2007,
                  September 26-28, 2007, Potsdam, Germany},
  series       = {{LNI}},
  volume       = {{P-115}},
  pages        = {174--184},
  publisher    = {{GI}},
  year         = {2007},
  url          = {https://dl.gi.de/handle/20.500.12116/22366},
  timestamp    = {Tue, 04 Jul 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/gcb/KlieMVCJAHH07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/lwa/KlieHMVCJAH07,
  author       = {Sebastian Klie and
                  Alexander Hinneburg and
                  Lennart Martens and
                  Juan Antonio Vizca{\'{\i}}no and
                  Richard G. C{\^{o}}t{\'{e}} and
                  Philip Jones and
                  Rolf Apweiler and
                  Henning Hermjakob},
  editor       = {Alexander Hinneburg},
  title        = {Analysing latent topics in large-scale proteomics},
  booktitle    = {{LWA} 2007: Lernen - Wissen - Adaption, Halle, Deutschland, September
                  2007, Workshop Proceedings},
  pages        = {73--80},
  publisher    = {Martin-Luther-University Halle-Wittenberg},
  year         = {2007},
  timestamp    = {Thu, 05 Jul 2018 07:57:33 +0200},
  biburl       = {https://dblp.org/rec/conf/lwa/KlieHMVCJAH07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeinonenNZA06,
  author       = {Rasko Leinonen and
                  Francesco Nardone and
                  Weimin Zhu and
                  Rolf Apweiler},
  title        = {UniSave: the UniProtKB Sequence/Annotation Version database},
  journal      = {Bioinform.},
  volume       = {22},
  number       = {10},
  pages        = {1284--1285},
  year         = {2006},
  url          = {https://doi.org/10.1093/bioinformatics/btl105},
  doi          = {10.1093/BIOINFORMATICS/BTL105},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LeinonenNZA06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CoteJAH06,
  author       = {Richard G. C{\^{o}}t{\'{e}} and
                  Philip Jones and
                  Rolf Apweiler and
                  Henning Hermjakob},
  title        = {The Ontology Lookup Service, a lightweight cross-platform tool for
                  controlled vocabulary queries},
  journal      = {{BMC} Bioinform.},
  volume       = {7},
  pages        = {97},
  year         = {2006},
  url          = {https://doi.org/10.1186/1471-2105-7-97},
  doi          = {10.1186/1471-2105-7-97},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/CoteJAH06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CochraneAAABBBBBBCDEFGKKLLLLLMMMNPSSTVWZA06,
  author       = {Guy Cochrane and
                  Philippe Aldebert and
                  Nicola Althorpe and
                  Mikael Andersson and
                  Wendy Baker and
                  Alastair Baldwin and
                  Kirsty Bates and
                  Sumit Bhattacharyya and
                  Paul Browne and
                  Alexandra van den Broek and
                  Matias Castro and
                  Karyn Duggan and
                  Ruth Y. Eberhardt and
                  Nadeem Faruque and
                  John Gamble and
                  Carola Kanz and
                  Tamara Kulikova and
                  Charles Lee and
                  Rasko Leinonen and
                  Quan Lin and
                  Vincent Lombard and
                  Rodrigo Lopez and
                  Michelle McHale and
                  Hamish McWilliam and
                  Gaurab Mukherjee and
                  Francesco Nardone and
                  Maria Pilar Garcia Pastor and
                  Siamak Sobhany and
                  Peter Stoehr and
                  Katerina Tzouvara and
                  Robert Vaughan and
                  Dan Wu and
                  Weimin Zhu and
                  Rolf Apweiler},
  title        = {{EMBL} Nucleotide Sequence Database: developments in 2005},
  journal      = {Nucleic Acids Res.},
  volume       = {34},
  number       = {Database-Issue},
  pages        = {10--15},
  year         = {2006},
  url          = {https://doi.org/10.1093/nar/gkj130},
  doi          = {10.1093/NAR/GKJ130},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/CochraneAAABBBBBBCDEFGKKLLLLLMMMNPSSTVWZA06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WuABNBBFGHLMMMORS06,
  author       = {Cathy H. Wu and
                  Rolf Apweiler and
                  Amos Bairoch and
                  Darren A. Natale and
                  Winona C. Barker and
                  Brigitte Boeckmann and
                  Serenella Ferro and
                  Elisabeth Gasteiger and
                  Hongzhan Huang and
                  Rodrigo Lopez and
                  Michele Magrane and
                  Maria Jesus Martin and
                  Raja Mazumder and
                  Claire O'Donovan and
                  Nicole Redaschi and
                  Baris E. Suzek},
  title        = {The Universal Protein Resource (UniProt): an expanding universe of
                  protein information},
  journal      = {Nucleic Acids Res.},
  volume       = {34},
  number       = {Database-Issue},
  pages        = {187--191},
  year         = {2006},
  url          = {https://doi.org/10.1093/nar/gkj161},
  doi          = {10.1093/NAR/GKJ161},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/WuABNBBFGHLMMMORS06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/JonesCMQTDHA06,
  author       = {Philip Jones and
                  Richard G. C{\^{o}}t{\'{e}} and
                  Lennart Martens and
                  Antony F. Quinn and
                  Chris F. Taylor and
                  William Derache and
                  Henning Hermjakob and
                  Rolf Apweiler},
  title        = {{PRIDE:} a public repository of protein and peptide identifications
                  for the proteomics community},
  journal      = {Nucleic Acids Res.},
  volume       = {34},
  number       = {Database-Issue},
  pages        = {659--663},
  year         = {2006},
  url          = {https://doi.org/10.1093/nar/gkj138},
  doi          = {10.1093/NAR/GKJ138},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/JonesCMQTDHA06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JonesVDHKKQWHA05,
  author       = {Philip Jones and
                  Nisha Vinod and
                  Thomas A. Down and
                  Andre Hackmann and
                  Andreas K{\"{a}}h{\"{a}}ri and
                  Ernst Kretschmann and
                  Antony F. Quinn and
                  Daniela Wieser and
                  Henning Hermjakob and
                  Rolf Apweiler},
  title        = {Dasty and UniProt {DAS:} a perfect pair for protein feature visualization},
  journal      = {Bioinform.},
  volume       = {21},
  number       = {14},
  pages        = {3198--3199},
  year         = {2005},
  url          = {https://doi.org/10.1093/bioinformatics/bti506},
  doi          = {10.1093/BIOINFORMATICS/BTI506},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/JonesVDHKKQWHA05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PetryszakKWA05,
  author       = {Robert Petryszak and
                  Ernst Kretschmann and
                  Daniela Wieser and
                  Rolf Apweiler},
  title        = {The predictive power of the CluSTr database},
  journal      = {Bioinform.},
  volume       = {21},
  number       = {18},
  pages        = {3604--3609},
  year         = {2005},
  url          = {https://doi.org/10.1093/bioinformatics/bti542},
  doi          = {10.1093/BIOINFORMATICS/BTI542},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/PetryszakKWA05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BlaschkeYCCAHV05,
  author       = {Christian Blaschke and
                  Alexander S. Yeh and
                  Evelyn Camon and
                  Marc E. Colosimo and
                  Rolf Apweiler and
                  Lynette Hirschman and
                  Alfonso Valencia},
  title        = {Do you do text?},
  journal      = {Bioinform.},
  volume       = {21},
  number       = {23},
  pages        = {4199--4200},
  year         = {2005},
  url          = {https://doi.org/10.1093/bioinformatics/bti695},
  doi          = {10.1093/BIOINFORMATICS/BTI695},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BlaschkeYCCAHV05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CamonBDLMMBA05,
  author       = {Evelyn Camon and
                  Daniel Barrell and
                  Emily Dimmer and
                  Vivian Lee and
                  Michele Magrane and
                  John Maslen and
                  David Binns and
                  Rolf Apweiler},
  title        = {An evaluation of {GO} annotation retrieval for BioCreAtIvE and {GOA}},
  journal      = {{BMC} Bioinform.},
  volume       = {6},
  number       = {{S-1}},
  year         = {2005},
  url          = {https://doi.org/10.1186/1471-2105-6-S1-S17},
  doi          = {10.1186/1471-2105-6-S1-S17},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/CamonBDLMMBA05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KanzAABBBBBCCDEFGDHKLLLMMNSSSTTVWZA05,
  author       = {Carola Kanz and
                  Philippe Aldebert and
                  Nicola Althorpe and
                  Wendy Baker and
                  Alastair Baldwin and
                  Kirsty Bates and
                  Paul Browne and
                  Alexandra van den Broek and
                  Matias Castro and
                  Guy Cochrane and
                  Karyn Duggan and
                  Ruth Y. Eberhardt and
                  Nadeem Faruque and
                  John Gamble and
                  Federico Garcia Diez and
                  Nicola Harte and
                  Tamara Kulikova and
                  Quan Lin and
                  Vincent Lombard and
                  Rodrigo Lopez and
                  Renato Mancuso and
                  Michelle McHale and
                  Francesco Nardone and
                  Ville Silventoinen and
                  Siamak Sobhany and
                  Peter Stoehr and
                  Mary Ann Tuli and
                  Katerina Tzouvara and
                  Robert Vaughan and
                  Dan Wu and
                  Weimin Zhu and
                  Rolf Apweiler},
  title        = {The {EMBL} Nucleotide Sequence Database},
  journal      = {Nucleic Acids Res.},
  volume       = {33},
  number       = {Database-Issue},
  pages        = {29--33},
  year         = {2005},
  url          = {https://doi.org/10.1093/nar/gki098},
  doi          = {10.1093/NAR/GKI098},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/KanzAABBBBBCCDEFGDHKLLLMMNSSSTTVWZA05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BairochAWBBFGHLMMNORY05,
  author       = {Amos Bairoch and
                  Rolf Apweiler and
                  Cathy H. Wu and
                  Winona C. Barker and
                  Brigitte Boeckmann and
                  Serenella Ferro and
                  Elisabeth Gasteiger and
                  Hongzhan Huang and
                  Rodrigo Lopez and
                  Michele Magrane and
                  Maria Jesus Martin and
                  Darren A. Natale and
                  Claire O'Donovan and
                  Nicole Redaschi and
                  Lai{-}Su L. Yeh},
  title        = {The Universal Protein Resource (UniProt)},
  journal      = {Nucleic Acids Res.},
  volume       = {33},
  number       = {Database-Issue},
  pages        = {154--159},
  year         = {2005},
  url          = {https://doi.org/10.1093/nar/gki070},
  doi          = {10.1093/NAR/GKI070},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/BairochAWBBFGHLMMNORY05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MulderAABBBBBBCCCDDFGHHHKKKLLLMMMMNOPPQSSSSVW05,
  author       = {Nicola J. Mulder and
                  Rolf Apweiler and
                  Teresa K. Attwood and
                  Amos Bairoch and
                  Alex Bateman and
                  David Binns and
                  Paul Bradley and
                  Peer Bork and
                  Phillip Bucher and
                  Lorenzo Cerutti and
                  Richard R. Copley and
                  Emmanuel Courcelle and
                  Ujjwal Das and
                  Richard Durbin and
                  Wolfgang Fleischmann and
                  Julian Gough and
                  Daniel H. Haft and
                  Nicola Harte and
                  Nicolas Hulo and
                  Daniel Kahn and
                  Alexander Kanapin and
                  Maria Krestyaninova and
                  David Lonsdale and
                  Rodrigo Lopez and
                  Ivica Letunic and
                  Martin Madera and
                  John Maslen and
                  Jennifer McDowall and
                  Alex L. Mitchell and
                  Anastasia N. Nikolskaya and
                  Sandra E. Orchard and
                  Marco Pagni and
                  Chris P. Ponting and
                  Emmanuel Quevillon and
                  Jeremy D. Selengut and
                  Christian J. A. Sigrist and
                  Ville Silventoinen and
                  David J. Studholme and
                  Robert Vaughan and
                  Cathy H. Wu},
  title        = {InterPro, progress and status in 2005},
  journal      = {Nucleic Acids Res.},
  volume       = {33},
  number       = {Database-Issue},
  pages        = {201--205},
  year         = {2005},
  url          = {https://doi.org/10.1093/nar/gki106},
  doi          = {10.1093/NAR/GKI106},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/MulderAABBBBBBCCCDDFGHHHKKKLLLMMMMNOPPQSSSSVW05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/VelankarMMSBAH05,
  author       = {Samir S. Velankar and
                  P. McNeil and
                  Virginie Mittard{-}Runte and
                  A. Suarez and
                  Daniel Barrell and
                  Rolf Apweiler and
                  Kim Henrick},
  title        = {{E-MSD:} an integrated data resource for bioinformatics},
  journal      = {Nucleic Acids Res.},
  volume       = {33},
  number       = {Database-Issue},
  pages        = {262--265},
  year         = {2005},
  url          = {https://doi.org/10.1093/nar/gki058},
  doi          = {10.1093/NAR/GKI058},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/VelankarMMSBAH05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KerseyBMHPKKDMPGKFDMRDPRA05,
  author       = {Paul J. Kersey and
                  Lawrence Bower and
                  Lorna Morris and
                  Alan Horne and
                  Robert Petryszak and
                  Carola Kanz and
                  Alexander Kanapin and
                  Ujjwal Das and
                  Karine Michoud and
                  Isabelle Phan and
                  Alexandre Gattiker and
                  Tamara Kulikova and
                  Nadeem Faruque and
                  Karyn Duggan and
                  Peter McLaren and
                  Britt Reimholz and
                  Laurent Duret and
                  Simon Penel and
                  Ingmar Reuter and
                  Rolf Apweiler},
  title        = {Integr8 and Genome Reviews: integrated views of complete genomes and
                  proteomes},
  journal      = {Nucleic Acids Res.},
  volume       = {33},
  number       = {Database-Issue},
  pages        = {297--302},
  year         = {2005},
  url          = {https://doi.org/10.1093/nar/gki039},
  doi          = {10.1093/NAR/GKI039},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/KerseyBMHPKKDMPGKFDMRDPRA05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/QuevillonSPHMAL05,
  author       = {Emmanuel Quevillon and
                  Ville Silventoinen and
                  Sharmila Pillai and
                  Nicola Harte and
                  Nicola J. Mulder and
                  Rolf Apweiler and
                  Rodrigo Lopez},
  title        = {InterProScan: protein domains identifier},
  journal      = {Nucleic Acids Res.},
  volume       = {33},
  number       = {Web-Server-Issue},
  pages        = {116--120},
  year         = {2005},
  url          = {https://doi.org/10.1093/nar/gki442},
  doi          = {10.1093/NAR/GKI442},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/QuevillonSPHMAL05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/OrchardMHA05,
  author       = {Sandra E. Orchard and
                  Luisa Montecchi{-}Palazzi and
                  Henning Hermjakob and
                  Rolf Apweiler},
  editor       = {Russ B. Altman and
                  Tiffany A. Jung and
                  Teri E. Klein and
                  A. Keith Dunker and
                  Lawrence Hunter},
  title        = {The Use of Common Ontologies and Controlled Vocabularies to Enable
                  Data Exchange and Deposition for Complex Proteomic Experiments},
  booktitle    = {Biocomputing 2005, Proceedings of the Pacific Symposium, Hawaii, USA,
                  4-8 January 2005},
  publisher    = {World Scientific},
  year         = {2005},
  url          = {http://psb.stanford.edu/psb-online/proceedings/psb05/orchard.pdf},
  timestamp    = {Thu, 12 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/psb/OrchardMHA05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/wi/05/WilliamsKPA05,
  author       = {Allyson L. Williams and
                  Paul J. Kersey and
                  Manuela Pruess and
                  Rolf Apweiler},
  editor       = {Francisco Azuaje and
                  Joaqu{\'{\i}}n Dopazo},
  title        = {Biological Databases: Infrastructure, Content and Integration},
  booktitle    = {Data Analysis and Visualization in Genomics and Proteomics},
  pages        = {11--28},
  publisher    = {Wiley},
  year         = {2005},
  url          = {https://doi.org/10.1002/0470094419.ch2},
  doi          = {10.1002/0470094419.CH2},
  timestamp    = {Sat, 05 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/books/wi/05/WilliamsKPA05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeinonenDBFLA04,
  author       = {Rasko Leinonen and
                  Federico Garcia Diez and
                  David Binns and
                  Wolfgang Fleischmann and
                  Rodrigo Lopez and
                  Rolf Apweiler},
  title        = {UniProt archive},
  journal      = {Bioinform.},
  volume       = {20},
  number       = {17},
  pages        = {3236--3237},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth191},
  doi          = {10.1093/BIOINFORMATICS/BTH191},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LeinonenDBFLA04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/LeeCDBA04,
  author       = {Vivian Lee and
                  Evelyn Camon and
                  Emily Dimmer and
                  Daniel Barrell and
                  Rolf Apweiler},
  title        = {GOA? - Use of Gene Ontology Annotation {(GOA)} for biological interpretation
                  of '-omics' data and for validation of automatic annotation tools},
  journal      = {Silico Biol.},
  volume       = {5},
  number       = {1},
  pages        = {5--8},
  year         = {2004},
  url          = {http://content.iospress.com/articles/in-silico-biology/isb00162},
  timestamp    = {Thu, 20 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/isb/LeeCDBA04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/PruessKA04,
  author       = {Manuela Pruess and
                  Paul J. Kersey and
                  Rolf Apweiler},
  title        = {The Integr8 project - a resource for genomic and proteomic data},
  journal      = {Silico Biol.},
  volume       = {5},
  number       = {2},
  pages        = {179--185},
  year         = {2004},
  url          = {http://content.iospress.com/articles/in-silico-biology/isb00177},
  timestamp    = {Thu, 20 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/isb/PruessKA04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/Martin-SanchezINMGLJAAB04,
  author       = {Fernando Mart{\'{\i}}n{-}S{\'{a}}nchez and
                  Ilias Iakovidis and
                  S. N{\o}rager and
                  Victor Maojo and
                  Piet C. de Groen and
                  Johan van der Lei and
                  T. Jones and
                  Klaus Abraham{-}Fuchs and
                  Rolf Apweiler and
                  Ankica Babic},
  title        = {Synergy between medical informatics and bioinformatics: facilitating
                  genomic medicine for future health care},
  journal      = {J. Biomed. Informatics},
  volume       = {37},
  number       = {1},
  pages        = {30--42},
  year         = {2004},
  url          = {https://doi.org/10.1016/j.jbi.2003.09.003},
  doi          = {10.1016/J.JBI.2003.09.003},
  timestamp    = {Tue, 16 Feb 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jbi/Martin-SanchezINMGLJAAB04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/PruessKA04,
  author       = {Manuela Pruess and
                  Paul J. Kersey and
                  Rolf Apweiler},
  title        = {Integrating Genomic and Proteomic Data: The Integr8 Project},
  journal      = {J. Integr. Bioinform.},
  volume       = {1},
  number       = {1},
  year         = {2004},
  url          = {https://doi.org/10.2390/biecoll-jib-2004-9},
  doi          = {10.2390/BIECOLL-JIB-2004-9},
  timestamp    = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jib/PruessKA04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KulikovaAABBBBCDEFGHKLLLLMMNSSSTTVWZA04,
  author       = {Tamara Kulikova and
                  Philippe Aldebert and
                  Nicola Althorpe and
                  Wendy Baker and
                  Kirsty Bates and
                  Paul Browne and
                  Alexandra van den Broek and
                  Guy Cochrane and
                  Karyn Duggan and
                  Ruth Y. Eberhardt and
                  Nadeem Faruque and
                  Maria Garcia{-}Pastor and
                  Nicola Harte and
                  Carola Kanz and
                  Rasko Leinonen and
                  Quan Lin and
                  Vincent Lombard and
                  Rodrigo Lopez and
                  Renato Mancuso and
                  Michelle McHale and
                  Francesco Nardone and
                  Ville Silventoinen and
                  Peter Stoehr and
                  Guenter Stoesser and
                  Mary Ann Tuli and
                  Katerina Tzouvara and
                  Robert Vaughan and
                  Dan Wu and
                  Weimin Zhu and
                  Rolf Apweiler},
  title        = {The {EMBL} Nucleotide Sequence Database},
  journal      = {Nucleic Acids Res.},
  volume       = {32},
  number       = {Database-Issue},
  pages        = {27--30},
  year         = {2004},
  url          = {https://doi.org/10.1093/nar/gkh120},
  doi          = {10.1093/NAR/GKH120},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/KulikovaAABBBBCDEFGHKLLLLMMNSSSTTVWZA04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ApweilerBWBBFGHLMMNORY04,
  author       = {Rolf Apweiler and
                  Amos Bairoch and
                  Cathy H. Wu and
                  Winona C. Barker and
                  Brigitte Boeckmann and
                  Serenella Ferro and
                  Elisabeth Gasteiger and
                  Hongzhan Huang and
                  Rodrigo Lopez and
                  Michele Magrane and
                  Maria Jesus Martin and
                  Darren A. Natale and
                  Claire O'Donovan and
                  Nicole Redaschi and
                  Lai{-}Su L. Yeh},
  title        = {UniProt: the Universal Protein knowledgebase},
  journal      = {Nucleic Acids Res.},
  volume       = {32},
  number       = {Database-Issue},
  pages        = {115--119},
  year         = {2004},
  url          = {https://doi.org/10.1093/nar/gkh131},
  doi          = {10.1093/NAR/GKH131},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/ApweilerBWBBFGHLMMNORY04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CamonMBLDMBHLA04,
  author       = {Evelyn Camon and
                  Michele Magrane and
                  Daniel Barrell and
                  Vivian Lee and
                  Emily Dimmer and
                  John Maslen and
                  David Binns and
                  Nicola Harte and
                  Rodrigo Lopez and
                  Rolf Apweiler},
  title        = {The Gene Ontology Annotation {(GOA)} Database: sharing knowledge in
                  Uniprot with Gene Ontology},
  journal      = {Nucleic Acids Res.},
  volume       = {32},
  number       = {Database-Issue},
  pages        = {262--266},
  year         = {2004},
  url          = {https://doi.org/10.1093/nar/gkh021},
  doi          = {10.1093/NAR/GKH021},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/CamonMBLDMBHLA04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/FleischmannDDFBABSTA04,
  author       = {Astrid Fleischmann and
                  Michael Darsow and
                  Kirill Degtyarenko and
                  Wolfgang Fleischmann and
                  Sin{\'{e}}ad Boyce and
                  Kristian B. Axelsen and
                  Amos Bairoch and
                  Dietmar Schomburg and
                  Keith F. Tipton and
                  Rolf Apweiler},
  title        = {IntEnz, the integrated relational enzyme database},
  journal      = {Nucleic Acids Res.},
  volume       = {32},
  number       = {Database-Issue},
  pages        = {434--437},
  year         = {2004},
  url          = {https://doi.org/10.1093/nar/gkh119},
  doi          = {10.1093/NAR/GKH119},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/FleischmannDDFBABSTA04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HermjakobMLMKOVRRVMABCSA04,
  author       = {Henning Hermjakob and
                  Luisa Montecchi{-}Palazzi and
                  Chris Lewington and
                  Sugath Mudali and
                  Samuel Kerrien and
                  Sandra E. Orchard and
                  Martin Vingron and
                  Bernd Roechert and
                  Peter Roepstorff and
                  Alfonso Valencia and
                  Hanah Margalit and
                  John Armstrong and
                  Amos Bairoch and
                  Gianni Cesareni and
                  David James Sherman and
                  Rolf Apweiler},
  title        = {IntAct: an open source molecular interaction database},
  journal      = {Nucleic Acids Res.},
  volume       = {32},
  number       = {Database-Issue},
  pages        = {452--455},
  year         = {2004},
  url          = {https://doi.org/10.1093/nar/gkh052},
  doi          = {10.1093/NAR/GKH052},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/HermjakobMLMKOVRRVMABCSA04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/WieserKA04,
  author       = {Daniela Wieser and
                  Ernst Kretschmann and
                  Rolf Apweiler},
  title        = {Filtering erroneous protein annotation},
  booktitle    = {Proceedings Twelfth International Conference on Intelligent Systems
                  for Molecular Biology/Third European Conference on Computational Biology
                  2004, Glasgow, UK, July 31-August 4, 2004},
  pages        = {342--347},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth938},
  doi          = {10.1093/BIOINFORMATICS/BTH938},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/WieserKA04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/CamonBLDA03,
  author       = {Evelyn Camon and
                  Daniel Barrell and
                  Vivian Lee and
                  Emily Dimmer and
                  Rolf Apweiler},
  title        = {The Gene Ontology Annotation {(GOA)} Database - An integrated resource
                  of {GO} annotations to the UniProt Knowledgebase},
  journal      = {Silico Biol.},
  volume       = {4},
  number       = {1},
  pages        = {5--6},
  year         = {2003},
  url          = {http://content.iospress.com/articles/in-silico-biology/isb00112},
  timestamp    = {Thu, 20 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/isb/CamonBLDA03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BrooksbankCHMMMOPTABBHLSSC03,
  author       = {Catherine Brooksbank and
                  Evelyn Camon and
                  Midori A. Harris and
                  Michele Magrane and
                  Maria Jesus Martin and
                  Nicola J. Mulder and
                  Claire O'Donovan and
                  Helen E. Parkinson and
                  Mary Ann Tuli and
                  Rolf Apweiler and
                  Ewan Birney and
                  Alvis Brazma and
                  Kim Henrick and
                  Rodrigo Lopez and
                  Guenter Stoesser and
                  Peter Stoehr and
                  Graham Cameron},
  title        = {The European Bioinformatics Institute's data resources},
  journal      = {Nucleic Acids Res.},
  volume       = {31},
  number       = {1},
  pages        = {43--50},
  year         = {2003},
  url          = {https://doi.org/10.1093/nar/gkg066},
  doi          = {10.1093/NAR/GKG066},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/BrooksbankCHMMMOPTABBHLSSC03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MulderAABBBBBBBBCCDDFFGHHHKKKLLLSOPPPSSSVZ03,
  author       = {Nicola J. Mulder and
                  Rolf Apweiler and
                  Terri K. Attwood and
                  Amos Bairoch and
                  Daniel Barrell and
                  Alex Bateman and
                  David Binns and
                  Margaret Biswas and
                  Paul Bradley and
                  Peer Bork and
                  Philipp Bucher and
                  Richard R. Copley and
                  Emmanuel Courcelle and
                  Ujjwal Das and
                  Richard Durbin and
                  Laurent Falquet and
                  Wolfgang Fleischmann and
                  Sam Griffiths{-}Jones and
                  Daniel H. Haft and
                  Nicola Harte and
                  Nicolas Hulo and
                  Daniel Kahn and
                  Alexander Kanapin and
                  Maria Krestyaninova and
                  Rodrigo Lopez and
                  Ivica Letunic and
                  David Lonsdale and
                  Ville Silventoinen and
                  Sandra E. Orchard and
                  Marco Pagni and
                  David Peyruc and
                  Chris P. Ponting and
                  Jeremy D. Selengut and
                  Florence Servant and
                  Christian J. A. Sigrist and
                  Robert Vaughan and
                  Evgeni M. Zdobnov},
  title        = {The InterPro Database, 2003 brings increased coverage and new features},
  journal      = {Nucleic Acids Res.},
  volume       = {31},
  number       = {1},
  pages        = {315--318},
  year         = {2003},
  url          = {https://doi.org/10.1093/nar/gkg046},
  doi          = {10.1093/NAR/GKG046},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/nar/MulderAABBBBBBBBCCDDFFGHHHKKKLLLSOPPPSSSVZ03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BoeckmannBABEGMMOPPS03,
  author       = {Brigitte Boeckmann and
                  Amos Bairoch and
                  Rolf Apweiler and
                  Marie{-}Claude Blatter and
                  Anne Estreicher and
                  Elisabeth Gasteiger and
                  Maria Jesus Martin and
                  Karine Michoud and
                  Claire O'Donovan and
                  Isabelle Phan and
                  Sandrine Pilbout and
                  Michel Schneider},
  title        = {The {SWISS-PROT} protein knowledgebase and its supplement TrEMBL in
                  2003},
  journal      = {Nucleic Acids Res.},
  volume       = {31},
  number       = {1},
  pages        = {365--370},
  year         = {2003},
  url          = {https://doi.org/10.1093/nar/gkg095},
  doi          = {10.1093/NAR/GKG095},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/BoeckmannBABEGMMOPPS03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KriventsevaSA03,
  author       = {Evgenia V. Kriventseva and
                  Florence Servant and
                  Rolf Apweiler},
  title        = {Improvements to CluSTr: the database of SWISS-PROT+TrEMBL protein
                  clusters},
  journal      = {Nucleic Acids Res.},
  volume       = {31},
  number       = {1},
  pages        = {388--389},
  year         = {2003},
  url          = {https://doi.org/10.1093/nar/gkg035},
  doi          = {10.1093/NAR/GKG035},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/KriventsevaSA03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PruessFKKKKMMPSA03,
  author       = {Manuela Pruess and
                  Wolfgang Fleischmann and
                  Alexander Kanapin and
                  Youla Karavidopoulou and
                  Paul J. Kersey and
                  Evgenia V. Kriventseva and
                  Virginie Mittard and
                  Nicola J. Mulder and
                  Isabelle Phan and
                  Florence Servant and
                  Rolf Apweiler},
  title        = {The Proteome Analysis database: a tool for the in silico analysis
                  of whole proteomes},
  journal      = {Nucleic Acids Res.},
  volume       = {31},
  number       = {1},
  pages        = {414--417},
  year         = {2003},
  url          = {https://doi.org/10.1093/nar/gkg105},
  doi          = {10.1093/NAR/GKG105},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/PruessFKKKKMMPSA03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/MulderAABBBBBBBCCDFFGGHHHKKKLLOPPPSS02,
  author       = {Nicola J. Mulder and
                  Rolf Apweiler and
                  Terri K. Attwood and
                  Amos Bairoch and
                  Alex Bateman and
                  David Binns and
                  Margaret Biswas and
                  Paul Bradley and
                  Peer Bork and
                  Philipp Bucher and
                  Richard R. Copley and
                  Emmanuel Courcelle and
                  Richard Durbin and
                  Laurent Falquet and
                  Wolfgang Fleischmann and
                  J{\'{e}}r{\^{o}}me Gouzy and
                  Sam Griffiths{-}Jones and
                  Daniel H. Haft and
                  Henning Hermjakob and
                  Nicolas Hulo and
                  Daniel Kahn and
                  Alexander Kanapin and
                  Maria Krestyaninova and
                  Rodrigo Lopez and
                  Ivica Letunic and
                  Sue Orchard and
                  Marco Pagni and
                  David Peyruc and
                  Chris P. Ponting and
                  Florence Servant and
                  Christian J. A. Sigrist},
  title        = {InterPro: An Integrated Documentation Resource for Protein Families,
                  Domains and Functional Sites},
  journal      = {Briefings Bioinform.},
  volume       = {3},
  number       = {3},
  pages        = {225--235},
  year         = {2002},
  url          = {https://doi.org/10.1093/bib/3.3.225},
  doi          = {10.1093/BIB/3.3.225},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bib/MulderAABBBBBBBCCDFFGGHHHKKKLLOPPPSS02.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ODonovanMGGBA02,
  author       = {Claire O'Donovan and
                  Maria Jesus Martin and
                  Alexandre Gattiker and
                  Elisabeth Gasteiger and
                  Amos Bairoch and
                  Rolf Apweiler},
  title        = {High-quality Protein Knowledge Resource: {SWISS-PROT} and TrEMBL},
  journal      = {Briefings Bioinform.},
  volume       = {3},
  number       = {3},
  pages        = {275--284},
  year         = {2002},
  url          = {https://doi.org/10.1093/bib/3.3.275},
  doi          = {10.1093/BIB/3.3.275},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/ODonovanMGGBA02.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/BiswasOCFKKKKMMPSA02,
  author       = {Margaret Biswas and
                  Joseph F. O'Rourke and
                  Evelyn Camon and
                  Gillian Fraser and
                  Alexander Kanapin and
                  Youla Karavidopoulou and
                  Paul J. Kersey and
                  Evgenia V. Kriventseva and
                  Virginie Mittard and
                  Nicola J. Mulder and
                  Isabelle Phan and
                  Florence Servant and
                  Rolf Apweiler},
  title        = {Applications of InterPro in Protein Annotation and Genome Analysis},
  journal      = {Briefings Bioinform.},
  volume       = {3},
  number       = {3},
  pages        = {285--295},
  year         = {2002},
  url          = {https://doi.org/10.1093/bib/3.3.285},
  doi          = {10.1093/BIB/3.3.285},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/BiswasOCFKKKKMMPSA02.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MollerCA02,
  author       = {Steffen M{\"{o}}ller and
                  Michael D. R. Croning and
                  Rolf Apweiler},
  title        = {Erratum: Evaluation of methods for the prediction of membrane spanning
                  regions},
  journal      = {Bioinform.},
  volume       = {18},
  number       = {1},
  pages        = {218},
  year         = {2002},
  url          = {https://doi.org/10.1093/bioinformatics/18.1.218},
  doi          = {10.1093/BIOINFORMATICS/18.1.218},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MollerCA02.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZdobnovLAE02,
  author       = {Evgeni M. Zdobnov and
                  Rodrigo Lopez and
                  Rolf Apweiler and
                  Thure Etzold},
  title        = {The {EBI} {SRS} server-recent developments},
  journal      = {Bioinform.},
  volume       = {18},
  number       = {2},
  pages        = {368--373},
  year         = {2002},
  url          = {https://doi.org/10.1093/bioinformatics/18.2.368},
  doi          = {10.1093/BIOINFORMATICS/18.2.368},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ZdobnovLAE02.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KanapinABFKKKMMOPSZ02,
  author       = {Alexander Kanapin and
                  Rolf Apweiler and
                  Margaret Biswas and
                  Wolfgang Fleischmann and
                  Youla Karavidopoulou and
                  Paul J. Kersey and
                  Evgenia V. Kriventseva and
                  Virginie Mittard and
                  Nicola J. Mulder and
                  Thomas M. Oinn and
                  Isabelle Phan and
                  Florence Servant and
                  Evgeni M. Zdobnov},
  title        = {Interactive InterPro-based comparisons of proteins in whole genomes},
  journal      = {Bioinform.},
  volume       = {18},
  number       = {2},
  pages        = {374--375},
  year         = {2002},
  url          = {https://doi.org/10.1093/bioinformatics/18.2.374},
  doi          = {10.1093/BIOINFORMATICS/18.2.374},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/KanapinABFKKKMMOPSZ02.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZdobnovLAE02a,
  author       = {Evgeni M. Zdobnov and
                  Rodrigo Lopez and
                  Rolf Apweiler and
                  Thure Etzold},
  title        = {The {EBI} {SRS} server-new features},
  journal      = {Bioinform.},
  volume       = {18},
  number       = {8},
  pages        = {1149--1150},
  year         = {2002},
  url          = {https://doi.org/10.1093/bioinformatics/18.8.1149},
  doi          = {10.1093/BIOINFORMATICS/18.8.1149},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ZdobnovLAE02a.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/candc/MollerSA02,
  author       = {Steffen M{\"{o}}ller and
                  Michael Schroeder and
                  Rolf Apweiler},
  title        = {Consistent Integration of Non-reliable Heterogeneous Information Resources
                  Applied to the Annotation of Transmembrane Proteins},
  journal      = {Comput. Chem.},
  volume       = {26},
  number       = {1},
  pages        = {41--49},
  year         = {2002},
  url          = {https://doi.org/10.1016/S0097-8485(01)00098-5},
  doi          = {10.1016/S0097-8485(01)00098-5},
  timestamp    = {Mon, 18 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/candc/MollerSA02.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/datascience/MagraneA02,
  author       = {Michele Magrane and
                  Rolf Apweiler},
  title        = {Organisation and standardisation of information in SWISS{\_}PROT and
                  TrEMBL},
  journal      = {Data Sci. J.},
  volume       = {1},
  number       = {1},
  pages        = {13--18},
  year         = {2002},
  url          = {https://doi.org/10.2481/dsj.1.13},
  doi          = {10.2481/DSJ.1.13},
  timestamp    = {Tue, 30 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/datascience/MagraneA02.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dagstuhl/ApweilerBFKM02,
  author       = {Rolf Apweiler and
                  Margaret Biswas and
                  Wolfgang Fleischmann and
                  Evgenia V. Kriventseva and
                  Nicola J. Mulder},
  editor       = {Julio Collado{-}Vides and
                  Ralf Hofest{\"{a}}dt},
  title        = {Automation of Protein Sequence Characterization and Its Application
                  in Whole Proteome Analysis},
  booktitle    = {Gene Regulations and Metabolism - Postgenomic Computational Approaches},
  pages        = {19--47},
  publisher    = {{MIT} Press},
  year         = {2002},
  timestamp    = {Tue, 20 Aug 2002 13:42:34 +0200},
  biburl       = {https://dblp.org/rec/conf/dagstuhl/ApweilerBFKM02.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/wi/02/ZdobnovLAE02,
  author       = {Evgeni M. Zdobnov and
                  Rodrigo Lopez and
                  Rolf Apweiler and
                  Thure Etzold},
  editor       = {Christoph W. Sensen},
  title        = {Bioinformatics: Using the Molecular Biology Data},
  booktitle    = {Essentials of Genomics and Bioinformatics},
  pages        = {265--284},
  publisher    = {Wiley},
  year         = {2002},
  url          = {https://doi.org/10.1002/9783527612642.ch11},
  doi          = {10.1002/9783527612642.CH11},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/books/wi/02/ZdobnovLAE02.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/Apweiler01,
  author       = {Rolf Apweiler},
  title        = {Functional Information in {SWISS-PROT:} the Basis for Large-scale
                  Characterisation of Protein Sequences},
  journal      = {Briefings Bioinform.},
  volume       = {2},
  number       = {1},
  pages        = {9--18},
  year         = {2001},
  url          = {https://doi.org/10.1093/bib/2.1.9},
  doi          = {10.1093/BIB/2.1.9},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/Apweiler01.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ApweilerKJB01,
  author       = {Rolf Apweiler and
                  Paul J. Kersey and
                  Vivien Junker and
                  Amos Bairoch},
  title        = {Technical comment to "Database verification studies of {SWISS-PROT}
                  and GenBank" by Karp et al},
  journal      = {Bioinform.},
  volume       = {17},
  number       = {6},
  pages        = {533--534},
  year         = {2001},
  url          = {https://doi.org/10.1093/bioinformatics/17.6.533},
  doi          = {10.1093/BIOINFORMATICS/17.6.533},
  timestamp    = {Wed, 16 Mar 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ApweilerKJB01.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MollerCA01,
  author       = {Steffen M{\"{o}}ller and
                  Michael D. R. Croning and
                  Rolf Apweiler},
  title        = {Evaluation of methods for the prediction of membrane spanning regions},
  journal      = {Bioinform.},
  volume       = {17},
  number       = {7},
  pages        = {646--653},
  year         = {2001},
  url          = {https://doi.org/10.1093/bioinformatics/17.7.646},
  doi          = {10.1093/BIOINFORMATICS/17.7.646},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MollerCA01.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZdobnovA01,
  author       = {Evgeni M. Zdobnov and
                  Rolf Apweiler},
  title        = {InterProScan - an integration platform for the signature-recognition
                  methods in InterPro},
  journal      = {Bioinform.},
  volume       = {17},
  number       = {9},
  pages        = {847--848},
  year         = {2001},
  url          = {https://doi.org/10.1093/bioinformatics/17.9.847},
  doi          = {10.1093/BIOINFORMATICS/17.9.847},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ZdobnovA01.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KretschmannFA01,
  author       = {Ernst Kretschmann and
                  Wolfgang Fleischmann and
                  Rolf Apweiler},
  title        = {Automatic rule generation for protein annotation with the {C4.5} data
                  mining algorithm applied on {SWISS-PROT}},
  journal      = {Bioinform.},
  volume       = {17},
  number       = {10},
  pages        = {920--926},
  year         = {2001},
  url          = {https://doi.org/10.1093/bioinformatics/17.10.920},
  doi          = {10.1093/BIOINFORMATICS/17.10.920},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/KretschmannFA01.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KriventsevaFZA01,
  author       = {Evgenia V. Kriventseva and
                  Wolfgang Fleischmann and
                  Evgeni M. Zdobnov and
                  Rolf Apweiler},
  title        = {CluSTr: a database of clusters of SWISS-PROT+TrEMBL proteins},
  journal      = {Nucleic Acids Res.},
  volume       = {29},
  number       = {1},
  pages        = {33--36},
  year         = {2001},
  url          = {https://doi.org/10.1093/nar/29.1.33},
  doi          = {10.1093/NAR/29.1.33},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/nar/KriventsevaFZA01.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ApweilerABBBBBCCCDFFGHHJKKKLMMOPSSZ01,
  author       = {Rolf Apweiler and
                  Terri K. Attwood and
                  Amos Bairoch and
                  Alex Bateman and
                  Ewan Birney and
                  Margaret Biswas and
                  Philipp Bucher and
                  Lorenzo Cerutti and
                  Florence Corpet and
                  Michael D. R. Croning and
                  Richard Durbin and
                  Laurent Falquet and
                  Wolfgang Fleischmann and
                  J{\'{e}}r{\^{o}}me Gouzy and
                  Henning Hermjakob and
                  Nicolas Hulo and
                  Inge Jonassen and
                  Daniel Kahn and
                  Alexander Kanapin and
                  Youla Karavidopoulou and
                  Rodrigo Lopez and
                  Beate Marx and
                  Nicola J. Mulder and
                  Thomas M. Oinn and
                  Marco Pagni and
                  Florence Servant and
                  Christian J. A. Sigrist and
                  Evgeni M. Zdobnov},
  title        = {The InterPro database, an integrated documentation resource for protein
                  families, domains and functional sites},
  journal      = {Nucleic Acids Res.},
  volume       = {29},
  number       = {1},
  pages        = {37--40},
  year         = {2001},
  url          = {https://doi.org/10.1093/nar/29.1.37},
  doi          = {10.1093/NAR/29.1.37},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/nar/ApweilerABBBBBCCCDFFGHHJKKKLMMOPSSZ01.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ApweilerBFKKKKMMPZ01,
  author       = {Rolf Apweiler and
                  Margaret Biswas and
                  Wolfgang Fleischmann and
                  Alexander Kanapin and
                  Youla Karavidopoulou and
                  Paul J. Kersey and
                  Evgenia V. Kriventseva and
                  Virginie Mittard and
                  Nicola J. Mulder and
                  Isabelle Phan and
                  Evgeni M. Zdobnov},
  title        = {Proteome Analysis Database: online application of InterPro and CluSTr
                  for the functional classification of proteins in whole genomes},
  journal      = {Nucleic Acids Res.},
  volume       = {29},
  number       = {1},
  pages        = {44--48},
  year         = {2001},
  url          = {https://doi.org/10.1093/nar/29.1.44},
  doi          = {10.1093/NAR/29.1.44},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/nar/ApweilerBFKKKKMMPZ01.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/KretschmannA01,
  author       = {Ernst Kretschmann and
                  Rolf Apweiler},
  editor       = {Edgar Wingender},
  title        = {Automatic rule generation for protein annotation with the {C4.5} data-mining
                  algorithm applied on peptides in Ensembl},
  booktitle    = {Computer science and biology: Proceedings of the German Conference
                  on Bioinformatics, {GCB} 2001, October 7-10, 2001, Braunschweig, Germany},
  pages        = {53--57},
  publisher    = {German Research Center for Biotechnology},
  year         = {2001},
  timestamp    = {Tue, 15 Mar 2005 13:06:29 +0100},
  biburl       = {https://dblp.org/rec/conf/gcb/KretschmannA01.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/FleischmannDDA01,
  author       = {Astrid Fleischmann and
                  Michael Darsow and
                  Kirill Degtyarenko and
                  Rolf Apweiler},
  editor       = {Edgar Wingender},
  title        = {IntEnz - The Enzyme Database in Oracle},
  booktitle    = {Computer science and biology: Proceedings of the German Conference
                  on Bioinformatics, {GCB} 2001, October 7-10, 2001, Braunschweig, Germany},
  pages        = {148--149},
  publisher    = {German Research Center for Biotechnology},
  year         = {2001},
  timestamp    = {Tue, 15 Mar 2005 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/gcb/FleischmannDDA01.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/RunteHA01,
  author       = {Kai J. Runte and
                  Henning Hermjakob and
                  Rolf Apweiler},
  editor       = {Edgar Wingender},
  title        = {Towards a New Curation Environment for the TrEMBL Database},
  booktitle    = {Computer science and biology: Proceedings of the German Conference
                  on Bioinformatics, {GCB} 2001, October 7-10, 2001, Braunschweig, Germany},
  pages        = {220},
  publisher    = {German Research Center for Biotechnology},
  year         = {2001},
  timestamp    = {Tue, 15 Mar 2005 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/gcb/RunteHA01.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MenneHA00,
  author       = {Kerstin M. L. Menne and
                  Henning Hermjakob and
                  Rolf Apweiler},
  title        = {A comparison of signal sequence prediction methods using a test set
                  of signal peptides},
  journal      = {Bioinform.},
  volume       = {16},
  number       = {8},
  pages        = {741--742},
  year         = {2000},
  url          = {https://doi.org/10.1093/bioinformatics/16.8.741},
  doi          = {10.1093/BIOINFORMATICS/16.8.741},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MenneHA00.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KerseyHA00,
  author       = {Paul J. Kersey and
                  Henning Hermjakob and
                  Rolf Apweiler},
  title        = {{VARSPLIC:} alternatively-spliced protein sequences derived from {SWISS-PROT}
                  and TrEMBL},
  journal      = {Bioinform.},
  volume       = {16},
  number       = {11},
  pages        = {1048--1049},
  year         = {2000},
  url          = {https://doi.org/10.1093/bioinformatics/16.11.1048},
  doi          = {10.1093/BIOINFORMATICS/16.11.1048},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/KerseyHA00.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ApweilerABBBBBCCCDFFGHHJKKKLMMOPSSZ00,
  author       = {Rolf Apweiler and
                  Terri K. Attwood and
                  Amos Bairoch and
                  Alex Bateman and
                  Ewan Birney and
                  Margaret Biswas and
                  Philipp Bucher and
                  Lorenzo Cerutti and
                  Florence Corpet and
                  Michael D. R. Croning and
                  Richard Durbin and
                  Laurent Falquet and
                  Wolfgang Fleischmann and
                  J{\'{e}}r{\^{o}}me Gouzy and
                  Henning Hermjakob and
                  Nicolas Hulo and
                  Inge Jonassen and
                  Daniel Kahn and
                  Alexander Kanapin and
                  Youla Karavidopoulou and
                  Rodrigo Lopez and
                  Beate Marx and
                  Nicola J. Mulder and
                  Thomas M. Oinn and
                  Marco Pagni and
                  Florence Servant and
                  Christian J. A. Sigrist and
                  Evgeni M. Zdobnov},
  title        = {InterPro-an integrated documentation resource for protein families,
                  domains and functional sites},
  journal      = {Bioinform.},
  volume       = {16},
  number       = {12},
  pages        = {1145--1150},
  year         = {2000},
  url          = {https://doi.org/10.1093/bioinformatics/16.12.1145},
  doi          = {10.1093/BIOINFORMATICS/16.12.1145},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ApweilerABBBBBCCCDFFGHHJKKKLMMOPSSZ00.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MollerKA00,
  author       = {Steffen M{\"{o}}ller and
                  Evgenia V. Kriventseva and
                  Rolf Apweiler},
  title        = {A collection of well characterised integral membrane proteins},
  journal      = {Bioinform.},
  volume       = {16},
  number       = {12},
  pages        = {1159--1160},
  year         = {2000},
  url          = {https://doi.org/10.1093/bioinformatics/16.12.1159},
  doi          = {10.1093/BIOINFORMATICS/16.12.1159},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MollerKA00.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BairochA00,
  author       = {Amos Bairoch and
                  Rolf Apweiler},
  title        = {The {SWISS-PROT} protein sequence database and its supplement TrEMBL
                  in 2000},
  journal      = {Nucleic Acids Res.},
  volume       = {28},
  number       = {1},
  pages        = {45--48},
  year         = {2000},
  url          = {https://doi.org/10.1093/nar/28.1.45},
  doi          = {10.1093/NAR/28.1.45},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/BairochA00.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/ZdobnovLAE00,
  author       = {Evgeni M. Zdobnov and
                  Rodrigo Lopez and
                  Rolf Apweiler and
                  Thure Etzold},
  editor       = {Erich Bornberg{-}Bauer and
                  Ursula Rost and
                  Jens Stoye},
  title        = {The {EBI} {SRS} Server: Recent Developments},
  booktitle    = {Proceedings of the German Conference on Bioinformatics {(GCB} 2000),
                  Heidelberg, October 5-7, 2000},
  pages        = {139--148},
  publisher    = {Logos Verlag},
  year         = {2000},
  timestamp    = {Fri, 22 Aug 2003 07:29:51 +0200},
  biburl       = {https://dblp.org/rec/conf/gcb/ZdobnovLAE00.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/BiswasAFKKKKMMOPZ00,
  author       = {Margaret Biswas and
                  Rolf Apweiler and
                  Wolfgang Fleischmann and
                  Alexander Kanapin and
                  Youla Karavidopoulou and
                  Paul J. Kersey and
                  Evgenia V. Kriventseva and
                  Virginie Mittard and
                  Nicola J. Mulder and
                  Thomas M. Oinn and
                  Isabelle Phan and
                  Evgeni M. Zdobnov},
  editor       = {Erich Bornberg{-}Bauer and
                  Ursula Rost and
                  Jens Stoye},
  title        = {Proteome Analysis: Application of InterPro and CluSTr for the Functional
                  Classification of Proteins in Whole Genomes},
  booktitle    = {Proceedings of the German Conference on Bioinformatics {(GCB} 2000),
                  Heidelberg, October 5-7, 2000},
  pages        = {149--158},
  publisher    = {Logos Verlag},
  year         = {2000},
  timestamp    = {Mon, 01 Feb 2016 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/gcb/BiswasAFKKKKMMOPZ00.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MollerLFA99,
  author       = {Steffen M{\"{o}}ller and
                  Ulf Leser and
                  Wolfgang Fleischmann and
                  Rolf Apweiler},
  title        = {EDITtoTrEMBL: a distributed approach to high-quality automated protein
                  sequence annotation},
  journal      = {Bioinform.},
  volume       = {15},
  number       = {3},
  pages        = {219--227},
  year         = {1999},
  url          = {https://doi.org/10.1093/bioinformatics/15.3.219},
  doi          = {10.1093/BIOINFORMATICS/15.3.219},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MollerLFA99.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FleischmannMGA99,
  author       = {Wolfgang Fleischmann and
                  Steffen M{\"{o}}ller and
                  Alain Gateau and
                  Rolf Apweiler},
  title        = {A novel method for automatic functional annotation of proteins},
  journal      = {Bioinform.},
  volume       = {15},
  number       = {3},
  pages        = {228--233},
  year         = {1999},
  url          = {https://doi.org/10.1093/bioinformatics/15.3.228},
  doi          = {10.1093/BIOINFORMATICS/15.3.228},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/FleischmannMGA99.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ODonovanMGCA99,
  author       = {Claire O'Donovan and
                  Maria Jesus Martin and
                  Eric Gl{\'{e}}met and
                  Jean{-}Jacques Codani and
                  Rolf Apweiler},
  title        = {Removing redundancy in {SWISS-PROT} and TrEMBL},
  journal      = {Bioinform.},
  volume       = {15},
  number       = {3},
  pages        = {258--259},
  year         = {1999},
  url          = {https://doi.org/10.1093/bioinformatics/15.3.258},
  doi          = {10.1093/BIOINFORMATICS/15.3.258},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ODonovanMGCA99.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HermjakobFA99,
  author       = {Henning Hermjakob and
                  Wolfgang Fleischmann and
                  Rolf Apweiler},
  title        = {Swissknife - 'lazy parsing' of {SWISS-PROT} entries},
  journal      = {Bioinform.},
  volume       = {15},
  number       = {9},
  pages        = {771--772},
  year         = {1999},
  url          = {https://doi.org/10.1093/bioinformatics/15.9.771},
  doi          = {10.1093/BIOINFORMATICS/15.9.771},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/HermjakobFA99.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JunkerAB99,
  author       = {Vivien L. Junker and
                  Rolf Apweiler and
                  Amos Bairoch},
  title        = {Representation of functional information in the {SWISS-PROT} Data
                  Bank},
  journal      = {Bioinform.},
  volume       = {15},
  number       = {12},
  pages        = {1066--1067},
  year         = {1999},
  url          = {https://doi.org/10.1093/bioinformatics/15.12.1066},
  doi          = {10.1093/BIOINFORMATICS/15.12.1066},
  timestamp    = {Fri, 28 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/JunkerAB99.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BairochA99,
  author       = {Amos Bairoch and
                  Rolf Apweiler},
  title        = {The {SWISS-PROT} protein sequence data bank and its supplement TrEMBL
                  in 1999},
  journal      = {Nucleic Acids Res.},
  volume       = {27},
  number       = {1},
  pages        = {49--54},
  year         = {1999},
  url          = {https://doi.org/10.1093/nar/27.1.49},
  doi          = {10.1093/NAR/27.1.49},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/BairochA99.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/MollerWKSGA99,
  author       = {Steffen M{\"{o}}ller and
                  Michael J. Wise and
                  David P. Kreil and
                  Michael Schroeder and
                  D. Gilbest and
                  Rolf Apweiler},
  title        = {Facilitating context-sensitive queries: {A} tool to rephrase {SWISS-PROT}},
  booktitle    = {Proceedings of the German Conference on Bioinformatics, {GCB} 1999,
                  October 4-6, 1999, Hannover, Germany},
  pages        = {216--218},
  year         = {1999},
  timestamp    = {Fri, 02 Aug 2019 15:48:16 +0200},
  biburl       = {https://dblp.org/rec/conf/gcb/MollerWKSGA99.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/VeldsHA99,
  author       = {Arno Velds and
                  Henning Hermjakob and
                  Rolf Apweiler},
  title        = {Feature Propagation - Semi Automatic transfer of position dependent
                  {SWISS-PROT} annotation},
  booktitle    = {Proceedings of the German Conference on Bioinformatics, {GCB} 1999,
                  October 4-6, 1999, Hannover, Germany},
  pages        = {229--230},
  year         = {1999},
  timestamp    = {Fri, 02 Aug 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/gcb/VeldsHA99.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BairochA98,
  author       = {Amos Bairoch and
                  Rolf Apweiler},
  title        = {The {SWISS-PROT} protein sequence data bank and its supplement TrEMBL
                  in 1998},
  journal      = {Nucleic Acids Res.},
  volume       = {26},
  number       = {1},
  pages        = {38--42},
  year         = {1998},
  url          = {https://doi.org/10.1093/nar/26.1.38},
  doi          = {10.1093/NAR/26.1.38},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/BairochA98.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/FleischmannMGA98,
  author       = {Wolfgang Fleischmann and
                  Steffen M{\"{o}}ller and
                  Alain Gateau and
                  Rolf Apweiler},
  title        = {A novel method for automatic and reliable functional annotation of
                  proteins},
  booktitle    = {Proceedings of the German Conference on Bioinformatics, {GCB} 1998,
                  University of Cologne, Germany, October 1998},
  publisher    = {Oxford University Press},
  year         = {1998},
  timestamp    = {Fri, 02 Aug 2019 15:48:14 +0200},
  biburl       = {https://dblp.org/rec/conf/gcb/FleischmannMGA98.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/HermjakobOMLA98,
  author       = {Henning Hermjakob and
                  Claire O'Donovan and
                  Maria Jesus Martin and
                  Fiona Lang and
                  Rolf Apweiler},
  title        = {{SPTR:} {A} comprehensive, non redundant and up-to-date view of the
                  protein sequence world},
  booktitle    = {Proceedings of the German Conference on Bioinformatics, {GCB} 1998,
                  University of Cologne, Germany, October 1998},
  publisher    = {Oxford University Press},
  year         = {1998},
  timestamp    = {Fri, 02 Aug 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/gcb/HermjakobOMLA98.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/MollerLFA98,
  author       = {Steffen M{\"{o}}ller and
                  Ulf Leser and
                  Wolfgang Fleischmann and
                  Rolf Apweiler},
  title        = {EDITtoTrEMBL: {A} distributed approach to high-quality automated protein
                  sequence annotation},
  booktitle    = {Proceedings of the German Conference on Bioinformatics, {GCB} 1998,
                  University of Cologne, Germany, October 1998},
  publisher    = {Oxford University Press},
  year         = {1998},
  timestamp    = {Fri, 02 Aug 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/gcb/MollerLFA98.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/ODonovanMGCA98,
  author       = {Claire O'Donovan and
                  Maria Jesus Martin and
                  Eric Gl{\'{e}}met and
                  Jean{-}Jacques Codani and
                  Rolf Apweiler},
  title        = {Removing Redundancy in {SWISS-PROT} and TrEMBL},
  booktitle    = {Proceedings of the German Conference on Bioinformatics, {GCB} 1998,
                  University of Cologne, Germany, October 1998},
  publisher    = {Oxford University Press},
  year         = {1998},
  timestamp    = {Fri, 02 Aug 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/gcb/ODonovanMGCA98.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BairochA97,
  author       = {Amos Bairoch and
                  Rolf Apweiler},
  title        = {The {SWISS-PROT} protein sequence data bank and its supplement TrEMBL},
  journal      = {Nucleic Acids Res.},
  volume       = {25},
  number       = {1},
  pages        = {31--36},
  year         = {1997},
  url          = {https://doi.org/10.1093/nar/25.1.31},
  doi          = {10.1093/NAR/25.1.31},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/BairochA97.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/ApweilerGCMJOLMKB97,
  author       = {Rolf Apweiler and
                  Alain Gateau and
                  Sergio Contrino and
                  Maria Jesus Martin and
                  Vivien Junker and
                  Claire O'Donovan and
                  Fiona Lang and
                  Nicoletta Mitaritonna and
                  Stephanie Kappus and
                  Amos Bairoch},
  editor       = {Terry Gaasterland and
                  Peter D. Karp and
                  Kevin Karplus and
                  Christos A. Ouzounis and
                  Chris Sander and
                  Alfonso Valencia},
  title        = {Protein Sequence Annotation in the Genome Era: The Annotation Concept
                  of {SWISS-PROT} + {TREMBL}},
  booktitle    = {Proceedings of the 5th International Conference on Intelligent Systems
                  for Molecular Biology, Halkidiki, Greece, June 21-26, 1997},
  pages        = {33--43},
  publisher    = {{AAAI}},
  year         = {1997},
  url          = {http://www.aaai.org/Library/ISMB/1997/ismb97-004.php},
  timestamp    = {Thu, 13 Dec 2012 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/ApweilerGCMJOLMKB97.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BairochA96,
  author       = {Amos Bairoch and
                  Rolf Apweiler},
  title        = {The {SWISS-PROT} protein sequence data bank and its new supplement
                  {TREMBL}},
  journal      = {Nucleic Acids Res.},
  volume       = {24},
  number       = {1},
  pages        = {21--25},
  year         = {1996},
  url          = {https://doi.org/10.1093/nar/24.1.21},
  doi          = {10.1093/NAR/24.1.21},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/BairochA96.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/ApweilerJGOLB96a,
  author       = {Rolf Apweiler and
                  Vivien Junker and
                  Alain Gateau and
                  Claire O'Donovan and
                  Fiona Lang and
                  Amos Bairoch},
  title        = {New Developments in the Linking of Biological Databases and Computer-Generation
                  of Annotation},
  booktitle    = {Proceedings of the German Conference on Bioinformatics, {GCB} 1996,
                  Leipzig, Germany, September 30 - October 2, 1996},
  pages        = {29--34},
  year         = {1996},
  timestamp    = {Sat, 07 Sep 2019 11:59:23 +0200},
  biburl       = {https://dblp.org/rec/conf/gcb/ApweilerJGOLB96a.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/ApweilerJGOLB96,
  author       = {Rolf Apweiler and
                  Vivien Junker and
                  Alain Gateau and
                  Claire O'Donovan and
                  Fiona Lang and
                  Amos Bairoch},
  editor       = {Ralf Hofest{\"{a}}dt and
                  Thomas Lengauer and
                  Markus L{\"{o}}ffler and
                  Dietmar Schomburg},
  title        = {New Developments in Linking of Biological Databases and Computer-Generation
                  of Annotations: {SWISS-PROT} and Its Computer-Annotated Supplement
                  {TREMBL}},
  booktitle    = {Bioinformatics, German Conference on Bioinformatics, Leipzig, Germany,
                  September 30 - October 2, 1996, Selected Papers},
  series       = {Lecture Notes in Computer Science},
  volume       = {1278},
  pages        = {44--51},
  publisher    = {Springer},
  year         = {1996},
  url          = {https://doi.org/10.1007/BFb0033202},
  doi          = {10.1007/BFB0033202},
  timestamp    = {Tue, 14 May 2019 10:00:42 +0200},
  biburl       = {https://dblp.org/rec/conf/gcb/ApweilerJGOLB96.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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