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ORCIDBibTeX records: Pierre Baldi
@inproceedings{DBLP:conf/nldl/AlexosB24,
author = {Antonios Alexos and
Pierre Baldi},
editor = {Tetiana Lutchyn and
Ad{\'{\i}}n Ram{\'{\i}}rez Rivera and
Benjamin Ricaud},
title = {FastStitch: Speech editing by hitch-hiking a pre-trained FastSpeech2
model},
booktitle = {Northern Lights Deep Learning Conference, {NLDL} 2024, 9-11 January
2024, UiT The Arctic University, Troms{\o}, Norway},
series = {Proceedings of Machine Learning Research},
volume = {233},
pages = {1--6},
publisher = {{PMLR}},
year = {2024},
url = {https://proceedings.mlr.press/v233/alexos24a.html},
timestamp = {Wed, 21 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/nldl/AlexosB24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nldl/Baldi24,
author = {Pierre Baldi},
editor = {Tetiana Lutchyn and
Ad{\'{\i}}n Ram{\'{\i}}rez Rivera and
Benjamin Ricaud},
title = {Deep Learning Over-Parameterization: the Shallow Fallacy},
booktitle = {Northern Lights Deep Learning Conference, {NLDL} 2024, 9-11 January
2024, UiT The Arctic University, Troms{\o}, Norway},
series = {Proceedings of Machine Learning Research},
volume = {233},
pages = {7--12},
publisher = {{PMLR}},
year = {2024},
url = {https://proceedings.mlr.press/v233/baldi24a.html},
timestamp = {Wed, 21 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/nldl/Baldi24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2403-04804,
author = {Antonios Alexos and
Pierre Baldi},
title = {AttentionStitch: How Attention Solves the Speech Editing Problem},
journal = {CoRR},
volume = {abs/2403.04804},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2403.04804},
doi = {10.48550/ARXIV.2403.04804},
eprinttype = {arXiv},
eprint = {2403.04804},
timestamp = {Wed, 10 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2403-04804.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2403-05129,
author = {Shahriar Hojjati Emmami and
Ali Pilehvar Meibody and
Lobat Tayebi and
Mohammadamin Tavakoli and
Pierre Baldi},
title = {Unraveling the Molecular Magic: {AI} Insights on the Formation of
Extraordinarily Stretchable Hydrogels},
journal = {CoRR},
volume = {abs/2403.05129},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2403.05129},
doi = {10.48550/ARXIV.2403.05129},
eprinttype = {arXiv},
eprint = {2403.05129},
timestamp = {Wed, 10 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2403-05129.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2403-10596,
author = {Antonios Alexos and
Yu{-}Dai Tsai and
Ian Domingo and
Maryam Pishgar and
Pierre Baldi},
title = {Neural Erosion: Emulating Controlled Neurodegeneration and Aging in
{AI} Systems},
journal = {CoRR},
volume = {abs/2403.10596},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2403.10596},
doi = {10.48550/ARXIV.2403.10596},
eprinttype = {arXiv},
eprint = {2403.10596},
timestamp = {Mon, 08 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2403-10596.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ai/BaldiV23,
author = {Pierre Baldi and
Roman Vershynin},
title = {The quarks of attention: Structure and capacity of neural attention
building blocks},
journal = {Artif. Intell.},
volume = {319},
pages = {103901},
year = {2023},
url = {https://doi.org/10.1016/j.artint.2023.103901},
doi = {10.1016/J.ARTINT.2023.103901},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ai/BaldiV23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cys/MirandaPMB23,
author = {Sabino Miranda and
Obdulia Pichardo{-}Lagunas and
Bella Mart{\'{\i}}nez{-}Seis and
Pierre Baldi},
title = {Evaluating the Performance of Large Language Models for Spanish Language
in Undergraduate Admissions Exams},
journal = {Computaci{\'{o}}n y Sistemas (CyS)},
volume = {27},
number = {4},
year = {2023},
url = {https://cys.cic.ipn.mx/ojs/index.php/CyS/article/view/4790},
timestamp = {Fri, 09 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/cys/MirandaPMB23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/TavakoliCBCV23,
author = {Mohammadamin Tavakoli and
Yin Ting T. Chiu and
Pierre Baldi and
Ann Marie Carlton and
David Van Vranken},
title = {RMechDB: {A} Public Database of Elementary Radical Reaction Steps},
journal = {J. Chem. Inf. Model.},
volume = {63},
number = {4},
pages = {1114--1123},
year = {2023},
url = {https://doi.org/10.1021/acs.jcim.2c01359},
doi = {10.1021/ACS.JCIM.2C01359},
timestamp = {Sat, 13 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcisd/TavakoliCBCV23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/KimBM23,
author = {Geunwoo Kim and
Pierre Baldi and
Stephen McAleer},
editor = {Alice Oh and
Tristan Naumann and
Amir Globerson and
Kate Saenko and
Moritz Hardt and
Sergey Levine},
title = {Language Models can Solve Computer Tasks},
booktitle = {Advances in Neural Information Processing Systems 36: Annual Conference
on Neural Information Processing Systems 2023, NeurIPS 2023, New Orleans,
LA, USA, December 10 - 16, 2023},
year = {2023},
url = {http://papers.nips.cc/paper\_files/paper/2023/hash/7cc1005ec73cfbaac9fa21192b622507-Abstract-Conference.html},
timestamp = {Fri, 01 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/nips/KimBM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/ShmakovGFGBW23,
author = {Alexander Shmakov and
Kevin Greif and
Michael James Fenton and
Aishik Ghosh and
Pierre Baldi and
Daniel Whiteson},
editor = {Alice Oh and
Tristan Naumann and
Amir Globerson and
Kate Saenko and
Moritz Hardt and
Sergey Levine},
title = {End-To-End Latent Variational Diffusion Models for Inverse Problems
in High Energy Physics},
booktitle = {Advances in Neural Information Processing Systems 36: Annual Conference
on Neural Information Processing Systems 2023, NeurIPS 2023, New Orleans,
LA, USA, December 10 - 16, 2023},
year = {2023},
url = {http://papers.nips.cc/paper\_files/paper/2023/hash/cd830afc6208a346e4ec5caf1b08b4b4-Abstract-Conference.html},
timestamp = {Fri, 01 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/nips/ShmakovGFGBW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/TavakoliBCCSV23,
author = {Mohammadamin Tavakoli and
Pierre Baldi and
Ann Marie Carlton and
Yin Ting T. Chiu and
Alexander Shmakov and
David Van Vranken},
editor = {Alice Oh and
Tristan Naumann and
Amir Globerson and
Kate Saenko and
Moritz Hardt and
Sergey Levine},
title = {{AI} for Interpretable Chemistry: Predicting Radical Mechanistic Pathways
via Contrastive Learning},
booktitle = {Advances in Neural Information Processing Systems 36: Annual Conference
on Neural Information Processing Systems 2023, NeurIPS 2023, New Orleans,
LA, USA, December 10 - 16, 2023},
year = {2023},
url = {http://papers.nips.cc/paper\_files/paper/2023/hash/0ca70969597da7166128f7755c64ffd5-Abstract-Conference.html},
timestamp = {Fri, 01 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/nips/TavakoliBCCSV23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/YuHPLBGLWBBLSBH23,
author = {Sungduk Yu and
Walter M. Hannah and
Liran Peng and
Jerry Lin and
Mohamed Aziz Bhouri and
Ritwik Gupta and
Bj{\"{o}}rn L{\"{u}}tjens and
Justus C. Will and
Gunnar Behrens and
Julius Busecke and
Nora Loose and
Charles Stern and
Tom Beucler and
Bryce E. Harrop and
Benjamin R. Hillman and
Andrea M. Jenney and
Savannah L. Ferretti and
Nana Liu and
Animashree Anandkumar and
Noah D. Brenowitz and
Veronika Eyring and
Nicholas Geneva and
Pierre Gentine and
Stephan Mandt and
Jaideep Pathak and
Akshay Subramaniam and
Carl Vondrick and
Rose Yu and
Laure Zanna and
Tian Zheng and
Ryan Abernathey and
Fiaz Ahmed and
David C. Bader and
Pierre Baldi and
Elizabeth A. Barnes and
Christopher S. Bretherton and
Peter M. Caldwell and
Wayne Chuang and
Yilun Han and
Yu Huang and
Fernando Iglesias{-}Suarez and
Sanket R. Jantre and
Karthik Kashinath and
Marat Khairoutdinov and
Thorsten Kurth and
Nicholas J. Lutsko and
Po{-}Lun Ma and
Griffin Mooers and
J. David Neelin and
David A. Randall and
Sara Shamekh and
Mark Taylor and
Nathan M. Urban and
Janni Yuval and
Guang Zhang and
Mike Pritchard},
editor = {Alice Oh and
Tristan Naumann and
Amir Globerson and
Kate Saenko and
Moritz Hardt and
Sergey Levine},
title = {ClimSim: {A} large multi-scale dataset for hybrid physics-ML climate
emulation},
booktitle = {Advances in Neural Information Processing Systems 36: Annual Conference
on Neural Information Processing Systems 2023, NeurIPS 2023, New Orleans,
LA, USA, December 10 - 16, 2023},
year = {2023},
url = {http://papers.nips.cc/paper\_files/paper/2023/hash/45fbcc01349292f5e059a0b8b02c8c3f-Abstract-Datasets\_and\_Benchmarks.html},
timestamp = {Fri, 01 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/nips/YuHPLBGLWBBLSBH23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/snams/AngelPAB23,
author = {Mirana Angel and
Anuj Patel and
Amal Alachkar and
Pierre Baldi},
title = {Clinical Knowledge and Reasoning Abilities of Large Language Models
in Pharmacy: {A} Comparative Study on the {NAPLEX} Exam},
booktitle = {Tenth International Conference on Social Networks Analysis, Management
and Security, {SNAMS} 2023, Abu Dhabi, United Arab Emirates, November
21-24, 2023},
pages = {1--4},
publisher = {{IEEE}},
year = {2023},
url = {https://doi.org/10.1109/SNAMS60348.2023.10375395},
doi = {10.1109/SNAMS60348.2023.10375395},
timestamp = {Tue, 16 Jan 2024 21:01:23 +0100},
biburl = {https://dblp.org/rec/conf/snams/AngelPAB23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/snams/AngelPXBABB23,
author = {Mirana Angel and
Anuj Patel and
Haiyi Xing and
Dylan Balsz and
Cody L. Arbuckle and
David Bruyette and
Pierre Baldi},
title = {{AI} and Veterinary Medicine: Performance of Large Language Models
on the North American Licensing Examination},
booktitle = {Tenth International Conference on Social Networks Analysis, Management
and Security, {SNAMS} 2023, Abu Dhabi, United Arab Emirates, November
21-24, 2023},
pages = {1--4},
publisher = {{IEEE}},
year = {2023},
url = {https://doi.org/10.1109/SNAMS60348.2023.10375414},
doi = {10.1109/SNAMS60348.2023.10375414},
timestamp = {Tue, 16 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/snams/AngelPXBABB23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2303-06201,
author = {Alexander Shmakov and
Alejandro Yankelevich and
Jianming Bian and
Pierre Baldi},
title = {Interpretable Joint Event-Particle Reconstruction for Neutrino Physics
at NOvA with Sparse CNNs and Transformers},
journal = {CoRR},
volume = {abs/2303.06201},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2303.06201},
doi = {10.48550/ARXIV.2303.06201},
eprinttype = {arXiv},
eprint = {2303.06201},
timestamp = {Thu, 16 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2303-06201.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2303-17491,
author = {Geunwoo Kim and
Pierre Baldi and
Stephen McAleer},
title = {Language Models can Solve Computer Tasks},
journal = {CoRR},
volume = {abs/2303.17491},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2303.17491},
doi = {10.48550/ARXIV.2303.17491},
eprinttype = {arXiv},
eprint = {2303.17491},
timestamp = {Fri, 14 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2303-17491.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2305-10399,
author = {Alexander Shmakov and
Kevin Greif and
Michael James Fenton and
Aishik Ghosh and
Pierre Baldi and
Daniel Whiteson},
title = {End-To-End Latent Variational Diffusion Models for Inverse Problems
in High Energy Physics},
journal = {CoRR},
volume = {abs/2305.10399},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2305.10399},
doi = {10.48550/ARXIV.2305.10399},
eprinttype = {arXiv},
eprint = {2305.10399},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2305-10399.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2305-11531,
author = {Junze Liu and
Aishik Ghosh and
Dylan Smith and
Pierre Baldi and
Daniel Whiteson},
title = {Generalizing to new calorimeter geometries with Geometry-Aware Autoregressive
Models (GAAMs) for fast calorimeter simulation},
journal = {CoRR},
volume = {abs/2305.11531},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2305.11531},
doi = {10.48550/ARXIV.2305.11531},
eprinttype = {arXiv},
eprint = {2305.11531},
timestamp = {Wed, 24 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2305-11531.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2306-08754,
author = {Sungduk Yu and
Walter M. Hannah and
Liran Peng and
Mohamed Aziz Bhouri and
Ritwik Gupta and
Jerry Lin and
Bj{\"{o}}rn L{\"{u}}tjens and
Justus C. Will and
Tom Beucler and
Bryce E. Harrop and
Benjamin R. Hillman and
Andrea M. Jenney and
Savannah L. Ferretti and
Nana Liu and
Anima Anandkumar and
Noah D. Brenowitz and
Veronika Eyring and
Pierre Gentine and
Stephan Mandt and
Jaideep Pathak and
Carl Vondrick and
Rose Yu and
Laure Zanna and
Ryan P. Abernathey and
Fiaz Ahmed and
David C. Bader and
Pierre Baldi and
Elizabeth A. Barnes and
Gunnar Behrens and
Christopher S. Bretherton and
Julius J. M. Busecke and
Peter M. Caldwell and
Wayne Chuang and
Yilun Han and
Yu Huang and
Fernando Iglesias{-}Suarez and
Sanket R. Jantre and
Karthik Kashinath and
Marat Khairoutdinov and
Thorsten Kurth and
Nicholas J. Lutsko and
Po{-}Lun Ma and
Griffin Mooers and
J. David Neelin and
David A. Randall and
Sara Shamekh and
Akshay Subramaniam and
Mark A. Taylor and
et al.},
title = {ClimSim: An open large-scale dataset for training high-resolution
physics emulators in hybrid multi-scale climate simulators},
journal = {CoRR},
volume = {abs/2306.08754},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2306.08754},
doi = {10.48550/ARXIV.2306.08754},
eprinttype = {arXiv},
eprint = {2306.08754},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2306-08754.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2307-11922,
author = {Kolby Nottingham and
Yasaman Razeghi and
Kyungmin Kim and
JB Lanier and
Pierre Baldi and
Roy Fox and
Sameer Singh},
title = {Selective Perception: Optimizing State Descriptions with Reinforcement
Learning for Language Model Actors},
journal = {CoRR},
volume = {abs/2307.11922},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2307.11922},
doi = {10.48550/ARXIV.2307.11922},
eprinttype = {arXiv},
eprint = {2307.11922},
timestamp = {Tue, 27 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2307-11922.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2309-01886,
author = {Michael James Fenton and
Alexander Shmakov and
Hideki Okawa and
Yuji Li and
Ko{-}Yang Hsiao and
Shih{-}Chieh Hsu and
Daniel Whiteson and
Pierre Baldi},
title = {Extended Symmetry Preserving Attention Networks for {LHC} Analysis},
journal = {CoRR},
volume = {abs/2309.01886},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2309.01886},
doi = {10.48550/ARXIV.2309.01886},
eprinttype = {arXiv},
eprint = {2309.01886},
timestamp = {Tue, 12 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2309-01886.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2311-01118,
author = {Mohammadamin Tavakoli and
Yin Ting T. Chiu and
Alexander Shmakov and
Ann Marie Carlton and
David Van Vranken and
Pierre Baldi},
title = {{AI} for Interpretable Chemistry: Predicting Radical Mechanistic Pathways
via Contrastive Learning},
journal = {CoRR},
volume = {abs/2311.01118},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2311.01118},
doi = {10.48550/ARXIV.2311.01118},
eprinttype = {arXiv},
eprint = {2311.01118},
timestamp = {Tue, 07 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2311-01118.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2312-10553,
author = {Antonios Alexos and
Junze Liu and
Akash Tiwari and
Kshitij Bhardwaj and
Sean Hayes and
Pierre Baldi and
Satish T. S. Bukkapatnam and
Suhas Bhandarkar},
title = {Machine Learning-Enhanced Prediction of Surface Smoothness for Inertial
Confinement Fusion Target Polishing Using Limited Data},
journal = {CoRR},
volume = {abs/2312.10553},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2312.10553},
doi = {10.48550/ARXIV.2312.10553},
eprinttype = {arXiv},
eprint = {2312.10553},
timestamp = {Tue, 16 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2312-10553.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2312-16845,
author = {Sabino Miranda and
Obdulia Pichardo{-}Lagunas and
Bella Mart{\'{\i}}nez{-}Seis and
Pierre Baldi},
title = {Evaluating the Performance of Large Language Models for Spanish Language
in Undergraduate Admissions Exams},
journal = {CoRR},
volume = {abs/2312.16845},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2312.16845},
doi = {10.48550/ARXIV.2312.16845},
eprinttype = {arXiv},
eprint = {2312.16845},
timestamp = {Fri, 19 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2312-16845.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/UrbanMB22,
author = {Gregor Urban and
Christophe N. Magnan and
Pierre Baldi},
title = {SSpro/ACCpro 6: almost perfect prediction of protein secondary structure
and relative solvent accessibility using profiles, deep learning and
structural similarity},
journal = {Bioinform.},
volume = {38},
number = {7},
pages = {2064--2065},
year = {2022},
url = {https://doi.org/10.1093/bioinformatics/btac019},
doi = {10.1093/BIOINFORMATICS/BTAC019},
timestamp = {Wed, 27 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/UrbanMB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcgs/HertelBG22,
author = {Lars Hertel and
Pierre Baldi and
Daniel L. Gillen},
title = {Reproducible Hyperparameter Optimization},
journal = {J. Comput. Graph. Stat.},
volume = {31},
number = {1},
pages = {84--99},
year = {2022},
url = {https://doi.org/10.1080/10618600.2021.1950004},
doi = {10.1080/10618600.2021.1950004},
timestamp = {Fri, 06 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcgs/HertelBG22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/Baldi22,
author = {Pierre Baldi},
title = {Call for a Public Open Database of All Chemical Reactions},
journal = {J. Chem. Inf. Model.},
volume = {62},
number = {9},
pages = {2011--2014},
year = {2022},
url = {https://doi.org/10.1021/acs.jcim.1c01140},
doi = {10.1021/ACS.JCIM.1C01140},
timestamp = {Mon, 13 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcisd/Baldi22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/TavakoliMVB22,
author = {Mohammadamin Tavakoli and
Aaron Mood and
David Van Vranken and
Pierre Baldi},
title = {Quantum Mechanics and Machine Learning Synergies: Graph Attention
Neural Networks to Predict Chemical Reactivity},
journal = {J. Chem. Inf. Model.},
volume = {62},
number = {9},
pages = {2121--2132},
year = {2022},
url = {https://doi.org/10.1021/acs.jcim.1c01400},
doi = {10.1021/ACS.JCIM.1C01400},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcisd/TavakoliMVB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jimaging/ChenUB22,
author = {Siwei Chen and
Gregor Urban and
Pierre Baldi},
title = {Weakly Supervised Polyp Segmentation in Colonoscopy Images Using Deep
Neural Networks},
journal = {J. Imaging},
volume = {8},
number = {5},
pages = {121},
year = {2022},
url = {https://doi.org/10.3390/jimaging8050121},
doi = {10.3390/JIMAGING8050121},
timestamp = {Tue, 16 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jimaging/ChenUB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SamadASSB22,
author = {Muntaha Samad and
Forest Agostinelli and
Tomoki Sato and
Kohei Shimaji and
Pierre Baldi},
title = {CircadiOmics: circadian omic web portal},
journal = {Nucleic Acids Res.},
volume = {50},
number = {{W1}},
pages = {183--190},
year = {2022},
url = {https://doi.org/10.1093/nar/gkac419},
doi = {10.1093/NAR/GKAC419},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SamadASSB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2201-01196,
author = {Mohammadamin Tavakoli and
Alexander Shmakov and
Francesco Ceccarelli and
Pierre Baldi},
title = {Rxn Hypergraph: a Hypergraph Attention Model for Chemical Reaction
Representation},
journal = {CoRR},
volume = {abs/2201.01196},
year = {2022},
url = {https://arxiv.org/abs/2201.01196},
eprinttype = {arXiv},
eprint = {2201.01196},
timestamp = {Mon, 10 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2201-01196.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2201-07700,
author = {Stephen McAleer and
Kevin Wang and
John B. Lanier and
Marc Lanctot and
Pierre Baldi and
Tuomas Sandholm and
Roy Fox},
title = {Anytime {PSRO} for Two-Player Zero-Sum Games},
journal = {CoRR},
volume = {abs/2201.07700},
year = {2022},
url = {https://arxiv.org/abs/2201.07700},
eprinttype = {arXiv},
eprint = {2201.07700},
timestamp = {Thu, 28 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2201-07700.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2202-08371,
author = {Pierre Baldi and
Roman Vershynin},
title = {The Quarks of Attention},
journal = {CoRR},
volume = {abs/2202.08371},
year = {2022},
url = {https://arxiv.org/abs/2202.08371},
eprinttype = {arXiv},
eprint = {2202.08371},
timestamp = {Tue, 01 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2202-08371.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2206-02819,
author = {Alexander Shmakov and
Mohammadamin Tavakoli and
Pierre Baldi and
Christopher M. Karwin and
Alex Broughton and
Simona Murgia},
title = {Deep Learning Models of the Discrete Component of the Galactic Interstellar
Gamma-Ray Emission},
journal = {CoRR},
volume = {abs/2206.02819},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2206.02819},
doi = {10.48550/ARXIV.2206.02819},
eprinttype = {arXiv},
eprint = {2206.02819},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2206-02819.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2207-06541,
author = {Stephen McAleer and
John B. Lanier and
Kevin A. Wang and
Pierre Baldi and
Roy Fox and
Tuomas Sandholm},
title = {Self-Play {PSRO:} Toward Optimal Populations in Two-Player Zero-Sum
Games},
journal = {CoRR},
volume = {abs/2207.06541},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2207.06541},
doi = {10.48550/ARXIV.2207.06541},
eprinttype = {arXiv},
eprint = {2207.06541},
timestamp = {Tue, 19 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2207-06541.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2207-09597,
author = {John B. Lanier and
Stephen McAleer and
Pierre Baldi and
Roy Fox},
title = {Feasible Adversarial Robust Reinforcement Learning for Underspecified
Environments},
journal = {CoRR},
volume = {abs/2207.09597},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2207.09597},
doi = {10.48550/ARXIV.2207.09597},
eprinttype = {arXiv},
eprint = {2207.09597},
timestamp = {Mon, 25 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2207-09597.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2212-08233,
author = {Junze Liu and
Aishik Ghosh and
Dylan Smith and
Pierre Baldi and
Daniel Whiteson},
title = {Geometry-aware Autoregressive Models for Calorimeter Shower Simulations},
journal = {CoRR},
volume = {abs/2212.08233},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2212.08233},
doi = {10.48550/ARXIV.2212.08233},
eprinttype = {arXiv},
eprint = {2212.08233},
timestamp = {Mon, 02 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2212-08233.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LenaB21,
author = {Pietro Di Lena and
Pierre Baldi},
title = {Fold recognition by scoring protein maps using the congruence coefficient},
journal = {Bioinform.},
volume = {37},
number = {4},
pages = {506--513},
year = {2021},
url = {https://doi.org/10.1093/bioinformatics/btaa833},
doi = {10.1093/BIOINFORMATICS/BTAA833},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LenaB21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nn/TavakoliAB21,
author = {Mohammadamin Tavakoli and
Forest Agostinelli and
Pierre Baldi},
title = {{SPLASH:} Learnable activation functions for improving accuracy and
adversarial robustness},
journal = {Neural Networks},
volume = {140},
pages = {1--12},
year = {2021},
url = {https://doi.org/10.1016/j.neunet.2021.02.023},
doi = {10.1016/J.NEUNET.2021.02.023},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nn/TavakoliAB21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nn/BaldiV21,
author = {Pierre Baldi and
Roman Vershynin},
title = {A theory of capacity and sparse neural encoding},
journal = {Neural Networks},
volume = {143},
pages = {12--27},
year = {2021},
url = {https://doi.org/10.1016/j.neunet.2021.05.005},
doi = {10.1016/J.NEUNET.2021.05.005},
timestamp = {Fri, 13 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nn/BaldiV21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/npjdm/LeeSHCB21,
author = {Christine K. Lee and
Muntaha Samad and
Ira Hofer and
Maxime Cannesson and
Pierre Baldi},
title = {Development and validation of an interpretable neural network for
prediction of postoperative in-hospital mortality},
journal = {npj Digit. Medicine},
volume = {4},
year = {2021},
url = {https://doi.org/10.1038/s41746-020-00377-1},
doi = {10.1038/S41746-020-00377-1},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/npjdm/LeeSHCB21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ijcai/RazeghiKLBAD21,
author = {Yasaman Razeghi and
Kalev Kask and
Yadong Lu and
Pierre Baldi and
Sakshi Agarwal and
Rina Dechter},
editor = {Zhi{-}Hua Zhou},
title = {Deep Bucket Elimination},
booktitle = {Proceedings of the Thirtieth International Joint Conference on Artificial
Intelligence, {IJCAI} 2021, Virtual Event / Montreal, Canada, 19-27
August 2021},
pages = {4235--4242},
publisher = {ijcai.org},
year = {2021},
url = {https://doi.org/10.24963/ijcai.2021/582},
doi = {10.24963/IJCAI.2021/582},
timestamp = {Wed, 25 Aug 2021 17:11:16 +0200},
biburl = {https://dblp.org/rec/conf/ijcai/RazeghiKLBAD21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/McAleerLWBF21,
author = {Stephen McAleer and
John B. Lanier and
Kevin A. Wang and
Pierre Baldi and
Roy Fox},
editor = {Marc'Aurelio Ranzato and
Alina Beygelzimer and
Yann N. Dauphin and
Percy Liang and
Jennifer Wortman Vaughan},
title = {{XDO:} {A} Double Oracle Algorithm for Extensive-Form Games},
booktitle = {Advances in Neural Information Processing Systems 34: Annual Conference
on Neural Information Processing Systems 2021, NeurIPS 2021, December
6-14, 2021, virtual},
pages = {23128--23139},
year = {2021},
url = {https://proceedings.neurips.cc/paper/2021/hash/c2e06e9a80370952f6ec5463c77cbace-Abstract.html},
timestamp = {Tue, 03 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/nips/McAleerLWBF21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/scam/Farmahinifarahani21,
author = {Farima Farmahinifarahani and
Yadong Lu and
Vaibhav Saini and
Pierre Baldi and
Cristina V. Lopes},
title = {{D-REX:} Static Detection of Relevant Runtime Exceptions with Location
Aware Transformer},
booktitle = {21st {IEEE} International Working Conference on Source Code Analysis
and Manipulation, {SCAM} 2021, Luxembourg, September 27-28, 2021},
pages = {198--208},
publisher = {{IEEE}},
year = {2021},
url = {https://doi.org/10.1109/SCAM52516.2021.00032},
doi = {10.1109/SCAM52516.2021.00032},
timestamp = {Wed, 01 Dec 2021 17:46:15 +0100},
biburl = {https://dblp.org/rec/conf/scam/Farmahinifarahani21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2102-00280,
author = {Jordan Ott and
David Bruyette and
Cody L. Arbuckle and
Dylan Balsz and
Silke Hecht and
Lisa Shubitz and
Pierre Baldi},
title = {Detecting Pulmonary Coccidioidomycosis (Valley fever) with Deep Convolutional
Neural Networks},
journal = {CoRR},
volume = {abs/2102.00280},
year = {2021},
url = {https://arxiv.org/abs/2102.00280},
eprinttype = {arXiv},
eprint = {2102.00280},
timestamp = {Wed, 10 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2102-00280.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2102-04518,
author = {Forest Agostinelli and
Alexander Shmakov and
Stephen McAleer and
Roy Fox and
Pierre Baldi},
title = {A* Search Without Expansions: Learning Heuristic Functions with Deep
Q-Networks},
journal = {CoRR},
volume = {abs/2102.04518},
year = {2021},
url = {https://arxiv.org/abs/2102.04518},
eprinttype = {arXiv},
eprint = {2102.04518},
timestamp = {Thu, 18 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2102-04518.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2102-10148,
author = {Pierre Baldi and
Roman Vershynin},
title = {A theory of capacity and sparse neural encoding},
journal = {CoRR},
volume = {abs/2102.10148},
year = {2021},
url = {https://arxiv.org/abs/2102.10148},
eprinttype = {arXiv},
eprint = {2102.10148},
timestamp = {Wed, 24 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2102-10148.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2103-06426,
author = {Stephen McAleer and
John B. Lanier and
Pierre Baldi and
Roy Fox},
title = {{XDO:} {A} Double Oracle Algorithm for Extensive-Form Games},
journal = {CoRR},
volume = {abs/2103.06426},
year = {2021},
url = {https://arxiv.org/abs/2103.06426},
eprinttype = {arXiv},
eprint = {2103.06426},
timestamp = {Tue, 16 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2103-06426.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2103-14536,
author = {Mohammadamin Tavakoli and
Aaron Mood and
David Van Vranken and
Pierre Baldi},
title = {Quantum Mechanics and Machine Learning Synergies: Graph Attention
Neural Networks to Predict Chemical Reactivity},
journal = {CoRR},
volume = {abs/2103.14536},
year = {2021},
url = {https://arxiv.org/abs/2103.14536},
eprinttype = {arXiv},
eprint = {2103.14536},
timestamp = {Wed, 07 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2103-14536.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2106-03898,
author = {Alexander Shmakov and
Michael James Fenton and
Ta{-}Wei Ho and
Shih{-}Chieh Hsu and
Daniel Whiteson and
Pierre Baldi},
title = {SPANet: Generalized Permutationless Set Assignment for Particle Physics
using Symmetry Preserving Attention},
journal = {CoRR},
volume = {abs/2106.03898},
year = {2021},
url = {https://arxiv.org/abs/2106.03898},
eprinttype = {arXiv},
eprint = {2106.03898},
timestamp = {Fri, 11 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2106-03898.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2106-03927,
author = {Stephen McAleer and
John B. Lanier and
Michael Dennis and
Pierre Baldi and
Roy Fox},
title = {Improving Social Welfare While Preserving Autonomy via a Pareto Mediator},
journal = {CoRR},
volume = {abs/2106.03927},
year = {2021},
url = {https://arxiv.org/abs/2106.03927},
eprinttype = {arXiv},
eprint = {2106.03927},
timestamp = {Tue, 15 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2106-03927.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2107-06424,
author = {Mohammadamin Tavakoli and
Peter J. Sadowski and
Pierre Baldi},
title = {Tourbillon: a Physically Plausible Neural Architecture},
journal = {CoRR},
volume = {abs/2107.06424},
year = {2021},
url = {https://arxiv.org/abs/2107.06424},
eprinttype = {arXiv},
eprint = {2107.06424},
timestamp = {Thu, 29 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2107-06424.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nn/OttLLB20,
author = {Jordan Ott and
Erik Linstead and
Nicholas LaHaye and
Pierre Baldi},
title = {Learning in the machine: To share or not to share?},
journal = {Neural Networks},
volume = {126},
pages = {235--249},
year = {2020},
url = {https://doi.org/10.1016/j.neunet.2020.03.016},
doi = {10.1016/J.NEUNET.2020.03.016},
timestamp = {Fri, 14 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nn/OttLLB20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/npjdm/HoferLGBC20,
author = {Ira Hofer and
Christine K. Lee and
Eilon Gabel and
Pierre Baldi and
Maxime Cannesson},
title = {Development and validation of a deep neural network model to predict
postoperative mortality, acute kidney injury, and reintubation using
a single feature set},
journal = {npj Digit. Medicine},
volume = {3},
year = {2020},
url = {https://doi.org/10.1038/s41746-020-0248-0},
doi = {10.1038/S41746-020-0248-0},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/npjdm/HoferLGBC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/softx/HertelCSOB20,
author = {Lars Hertel and
Julian Collado and
Peter J. Sadowski and
Jordan Ott and
Pierre Baldi},
title = {Sherpa: Robust hyperparameter optimization for machine learning},
journal = {SoftwareX},
volume = {12},
pages = {100591},
year = {2020},
url = {https://doi.org/10.1016/j.softx.2020.100591},
doi = {10.1016/J.SOFTX.2020.100591},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/softx/HertelCSOB20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/sp/OttPBLCB20,
author = {Jordan Ott and
Mike Pritchard and
Natalie Best and
Erik Linstead and
Milan Curcic and
Pierre Baldi},
title = {A Fortran-Keras Deep Learning Bridge for Scientific Computing},
journal = {Sci. Program.},
volume = {2020},
pages = {8888811:1--8888811:13},
year = {2020},
url = {https://doi.org/10.1155/2020/8888811},
doi = {10.1155/2020/8888811},
timestamp = {Wed, 16 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/sp/OttPBLCB20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aaaiss/TavakoliB20,
author = {Mohammadamin Tavakoli and
Pierre Baldi},
editor = {Jonghyun Lee and
Eric F. Darve and
Peter K. Kitanidis and
Matthew W. Farthing and
Tyler J. Hesser},
title = {Continuous Representation of Molecules using Graph Variational Autoencoder},
booktitle = {Proceedings of the {AAAI} 2020 Spring Symposium on Combining Artificial
Intelligence and Machine Learning with Physical Sciences, Stanford,
CA, USA, March 23rd - to - 25th, 2020},
series = {{CEUR} Workshop Proceedings},
volume = {2587},
publisher = {CEUR-WS.org},
year = {2020},
url = {https://ceur-ws.org/Vol-2587/article\_12.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:39 +0100},
biburl = {https://dblp.org/rec/conf/aaaiss/TavakoliB20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/McAleerLFB20,
author = {Stephen McAleer and
John B. Lanier and
Roy Fox and
Pierre Baldi},
editor = {Hugo Larochelle and
Marc'Aurelio Ranzato and
Raia Hadsell and
Maria{-}Florina Balcan and
Hsuan{-}Tien Lin},
title = {Pipeline {PSRO:} {A} Scalable Approach for Finding Approximate Nash
Equilibria in Large Games},
booktitle = {Advances in Neural Information Processing Systems 33: Annual Conference
on Neural Information Processing Systems 2020, NeurIPS 2020, December
6-12, 2020, virtual},
year = {2020},
url = {https://proceedings.neurips.cc/paper/2020/hash/e9bcd1b063077573285ae1a41025f5dc-Abstract.html},
timestamp = {Tue, 19 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/nips/McAleerLFB20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2004-08152,
author = {Mohammadamin Tavakoli and
Pierre Baldi},
title = {Continuous Representation of Molecules Using Graph Variational Autoencoder},
journal = {CoRR},
volume = {abs/2004.08152},
year = {2020},
url = {https://arxiv.org/abs/2004.08152},
eprinttype = {arXiv},
eprint = {2004.08152},
timestamp = {Tue, 21 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2004-08152.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2004-10652,
author = {Jordan Ott and
Mike Pritchard and
Natalie Best and
Erik Linstead and
Milan Curcic and
Pierre Baldi},
title = {A Fortran-Keras Deep Learning Bridge for Scientific Computing},
journal = {CoRR},
volume = {abs/2004.10652},
year = {2020},
url = {https://arxiv.org/abs/2004.10652},
eprinttype = {arXiv},
eprint = {2004.10652},
timestamp = {Tue, 28 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2004-10652.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2005-04048,
author = {Lars Hertel and
Julian Collado and
Peter J. Sadowski and
Jordan Ott and
Pierre Baldi},
title = {Sherpa: Robust Hyperparameter Optimization for Machine Learning},
journal = {CoRR},
volume = {abs/2005.04048},
year = {2020},
url = {https://arxiv.org/abs/2005.04048},
eprinttype = {arXiv},
eprint = {2005.04048},
timestamp = {Fri, 15 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2005-04048.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2006-08555,
author = {Stephen McAleer and
John B. Lanier and
Roy Fox and
Pierre Baldi},
title = {Pipeline {PSRO:} {A} Scalable Approach for Finding Approximate Nash
Equilibria in Large Games},
journal = {CoRR},
volume = {abs/2006.08555},
year = {2020},
url = {https://arxiv.org/abs/2006.08555},
eprinttype = {arXiv},
eprint = {2006.08555},
timestamp = {Wed, 17 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2006-08555.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2006-08947,
author = {Mohammadamin Tavakoli and
Forest Agostinelli and
Pierre Baldi},
title = {{SPLASH:} Learnable Activation Functions for Improving Accuracy and
Adversarial Robustness},
journal = {CoRR},
volume = {abs/2006.08947},
year = {2020},
url = {https://arxiv.org/abs/2006.08947},
eprinttype = {arXiv},
eprint = {2006.08947},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2006-08947.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2007-14604,
author = {Lars Hertel and
Pierre Baldi and
Daniel L. Gillen},
title = {Quantity vs. Quality: On Hyperparameter Optimization for Deep Reinforcement
Learning},
journal = {CoRR},
volume = {abs/2007.14604},
year = {2020},
url = {https://arxiv.org/abs/2007.14604},
eprinttype = {arXiv},
eprint = {2007.14604},
timestamp = {Mon, 03 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2007-14604.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2010-09206,
author = {Michael James Fenton and
Alexander Shmakov and
Ta{-}Wei Ho and
Shih{-}Chieh Hsu and
Daniel Whiteson and
Pierre Baldi},
title = {Permutationless Many-Jet Event Reconstruction with Symmetry Preserving
Attention Networks},
journal = {CoRR},
volume = {abs/2010.09206},
year = {2020},
url = {https://arxiv.org/abs/2010.09206},
eprinttype = {arXiv},
eprint = {2010.09206},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2010-09206.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2011-06408,
author = {Stephen McAleer and
Alex Fast and
Yuntian Xue and
Magdalene Seiler and
William Tang and
Mihaela Balu and
Pierre Baldi and
Andrew W. Browne},
title = {Deep machine learning-assisted multiphoton microscopy to reduce light
exposure and expedite imaging},
journal = {CoRR},
volume = {abs/2011.06408},
year = {2020},
url = {https://arxiv.org/abs/2011.06408},
eprinttype = {arXiv},
eprint = {2011.06408},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2011-06408.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2012-06181,
author = {Junze Liu and
Jordan Ott and
Julian Collado and
Benjamin Jargowsky and
Wenjie Wu and
Jianming Bian and
Pierre Baldi},
title = {Deep-Learning-Based Kinematic Reconstruction for {DUNE}},
journal = {CoRR},
volume = {abs/2012.06181},
year = {2020},
url = {https://arxiv.org/abs/2012.06181},
eprinttype = {arXiv},
eprint = {2012.06181},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2012-06181.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cstat/LiHSB19,
author = {Lingge Li and
Andrew Holbrook and
Babak Shahbaba and
Pierre Baldi},
title = {Neural network gradient Hamiltonian Monte Carlo},
journal = {Comput. Stat.},
volume = {34},
number = {1},
pages = {281--299},
year = {2019},
url = {https://doi.org/10.1007/s00180-018-00861-z},
doi = {10.1007/S00180-018-00861-Z},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/cstat/LiHSB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/natmi/AgostinelliMSB19,
author = {Forest Agostinelli and
Stephen McAleer and
Alexander Shmakov and
Pierre Baldi},
title = {Solving the Rubik's cube with deep reinforcement learning and search},
journal = {Nat. Mach. Intell.},
volume = {1},
number = {8},
pages = {356--363},
year = {2019},
url = {https://doi.org/10.1038/s42256-019-0070-z},
doi = {10.1038/S42256-019-0070-Z},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/natmi/AgostinelliMSB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nn/BaldiV19,
author = {Pierre Baldi and
Roman Vershynin},
title = {The capacity of feedforward neural networks},
journal = {Neural Networks},
volume = {116},
pages = {288--311},
year = {2019},
url = {https://doi.org/10.1016/j.neunet.2019.04.009},
doi = {10.1016/J.NEUNET.2019.04.009},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nn/BaldiV19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/simods/BaldiV19,
author = {Pierre Baldi and
Roman Vershynin},
title = {Polynomial Threshold Functions, Hyperplane Arrangements, and Random
Tensors},
journal = {{SIAM} J. Math. Data Sci.},
volume = {1},
number = {4},
pages = {699--729},
year = {2019},
url = {https://doi.org/10.1137/19M1257792},
doi = {10.1137/19M1257792},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/simods/BaldiV19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/UrbanBPSSHHB19,
author = {Gregor Urban and
Kevin Bache and
Duc T. T. Phan and
Agua Sobrino and
Alexander Shmakov and
Stephanie J. Hachey and
Christopher C. W. Hughes and
Pierre Baldi},
title = {Deep Learning for Drug Discovery and Cancer Research: Automated Analysis
of Vascularization Images},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {16},
number = {3},
pages = {1029--1035},
year = {2019},
url = {https://doi.org/10.1109/TCBB.2018.2841396},
doi = {10.1109/TCBB.2018.2841396},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/UrbanBPSSHHB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tii/ShaoMYB19,
author = {Siyu Shao and
Stephen McAleer and
Ruqiang Yan and
Pierre Baldi},
title = {Highly Accurate Machine Fault Diagnosis Using Deep Transfer Learning},
journal = {{IEEE} Trans. Ind. Informatics},
volume = {15},
number = {4},
pages = {2446--2455},
year = {2019},
url = {https://doi.org/10.1109/TII.2018.2864759},
doi = {10.1109/TII.2018.2864759},
timestamp = {Thu, 24 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tii/ShaoMYB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aaai/LiNBB19,
author = {Lingge Li and
Nitish Nayak and
Jianming Bian and
Pierre Baldi},
title = {Efficient Neutrino Oscillation Parameter Inference with Gaussian Process},
booktitle = {The Thirty-Third {AAAI} Conference on Artificial Intelligence, {AAAI}
2019, The Thirty-First Innovative Applications of Artificial Intelligence
Conference, {IAAI} 2019, The Ninth {AAAI} Symposium on Educational
Advances in Artificial Intelligence, {EAAI} 2019, Honolulu, Hawaii,
USA, January 27 - February 1, 2019},
pages = {9967--9968},
publisher = {{AAAI} Press},
year = {2019},
url = {https://doi.org/10.1609/aaai.v33i01.33019967},
doi = {10.1609/AAAI.V33I01.33019967},
timestamp = {Mon, 04 Sep 2023 12:29:24 +0200},
biburl = {https://dblp.org/rec/conf/aaai/LiNBB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iclr/McAleerASB19,
author = {Stephen McAleer and
Forest Agostinelli and
Alexander Shmakov and
Pierre Baldi},
title = {Solving the Rubik's Cube with Approximate Policy Iteration},
booktitle = {7th International Conference on Learning Representations, {ICLR} 2019,
New Orleans, LA, USA, May 6-9, 2019},
publisher = {OpenReview.net},
year = {2019},
url = {https://openreview.net/forum?id=Hyfn2jCcKm},
timestamp = {Thu, 25 Jul 2019 13:03:15 +0200},
biburl = {https://dblp.org/rec/conf/iclr/McAleerASB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icse/SainiFLY0SBL19,
author = {Vaibhav Saini and
Farima Farmahinifarahani and
Yadong Lu and
Di Yang and
Pedro Martins and
Hitesh Sajnani and
Pierre Baldi and
Cristina V. Lopes},
editor = {Joanne M. Atlee and
Tevfik Bultan and
Jon Whittle},
title = {Towards automating precision studies of clone detectors},
booktitle = {Proceedings of the 41st International Conference on Software Engineering,
{ICSE} 2019, Montreal, QC, Canada, May 25-31, 2019},
pages = {49--59},
publisher = {{IEEE} / {ACM}},
year = {2019},
url = {https://doi.org/10.1109/ICSE.2019.00023},
doi = {10.1109/ICSE.2019.00023},
timestamp = {Tue, 24 May 2022 15:28:49 +0200},
biburl = {https://dblp.org/rec/conf/icse/SainiFLY0SBL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ijcai/BaldiSL19,
author = {Pierre Baldi and
Peter J. Sadowski and
Zhiqin Lu},
editor = {Sarit Kraus},
title = {Learning in the Machine: Random Backpropagation and the Deep Learning
Channel (Extended Abstract)},
booktitle = {Proceedings of the Twenty-Eighth International Joint Conference on
Artificial Intelligence, {IJCAI} 2019, Macao, China, August 10-16,
2019},
pages = {6348--6352},
publisher = {ijcai.org},
year = {2019},
url = {https://doi.org/10.24963/ijcai.2019/885},
doi = {10.24963/IJCAI.2019/885},
timestamp = {Tue, 20 Aug 2019 16:18:18 +0200},
biburl = {https://dblp.org/rec/conf/ijcai/BaldiSL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/LiPSFOB19,
author = {Lingge Li and
Dustin S. Pluta and
Babak Shahbaba and
Norbert Fortin and
Hernando Ombao and
Pierre Baldi},
editor = {Hanna M. Wallach and
Hugo Larochelle and
Alina Beygelzimer and
Florence d'Alch{\'{e}}{-}Buc and
Emily B. Fox and
Roman Garnett},
title = {Modeling Dynamic Functional Connectivity with Latent Factor Gaussian
Processes},
booktitle = {Advances in Neural Information Processing Systems 32: Annual Conference
on Neural Information Processing Systems 2019, NeurIPS 2019, December
8-14, 2019, Vancouver, BC, Canada},
pages = {8261--8271},
year = {2019},
url = {https://proceedings.neurips.cc/paper/2019/hash/bf499a12e998d178afd964adf64a60cb-Abstract.html},
timestamp = {Mon, 16 May 2022 15:41:51 +0200},
biburl = {https://dblp.org/rec/conf/nips/LiPSFOB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1901-00434,
author = {Pierre Baldi and
Roman Vershynin},
title = {The capacity of feedforward neural networks},
journal = {CoRR},
volume = {abs/1901.00434},
year = {2019},
url = {http://arxiv.org/abs/1901.00434},
eprinttype = {arXiv},
eprint = {1901.00434},
timestamp = {Thu, 31 Jan 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1901-00434.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1906-03710,
author = {John B. Lanier and
Stephen McAleer and
Pierre Baldi},
title = {Curiosity-Driven Multi-Criteria Hindsight Experience Replay},
journal = {CoRR},
volume = {abs/1906.03710},
year = {2019},
url = {http://arxiv.org/abs/1906.03710},
eprinttype = {arXiv},
eprint = {1906.03710},
timestamp = {Fri, 14 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1906-03710.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1909-11483,
author = {Jordan Ott and
Erik Linstead and
Nicholas LaHaye and
Pierre Baldi},
title = {Learning in the Machine: To Share or Not to Share?},
journal = {CoRR},
volume = {abs/1909.11483},
year = {2019},
url = {http://arxiv.org/abs/1909.11483},
eprinttype = {arXiv},
eprint = {1909.11483},
timestamp = {Fri, 27 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1909-11483.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1912-04451,
author = {Alexander Shmakov and
John B. Lanier and
Stephen McAleer and
Rohan Achar and
Cristina V. Lopes and
Pierre Baldi},
title = {ColosseumRL: {A} Framework for Multiagent Reinforcement Learning in
N-Player Games},
journal = {CoRR},
volume = {abs/1912.04451},
year = {2019},
url = {http://arxiv.org/abs/1912.04451},
eprinttype = {arXiv},
eprint = {1912.04451},
timestamp = {Thu, 02 Jan 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1912-04451.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ai/BaldiSL18,
author = {Pierre Baldi and
Peter J. Sadowski and
Zhiqin Lu},
title = {Learning in the machine: Random backpropagation and the deep learning
channel},
journal = {Artif. Intell.},
volume = {260},
pages = {1--35},
year = {2018},
url = {https://doi.org/10.1016/j.artint.2018.03.003},
doi = {10.1016/J.ARTINT.2018.03.003},
timestamp = {Tue, 23 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ai/BaldiSL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/datamine/Baldi18,
author = {Pierre Baldi},
title = {The inner and outer approaches to the design of recursive neural architectures},
journal = {Data Min. Knowl. Discov.},
volume = {32},
number = {1},
pages = {218--230},
year = {2018},
url = {https://doi.org/10.1007/s10618-017-0531-0},
doi = {10.1007/S10618-017-0531-0},
timestamp = {Tue, 26 Jun 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/datamine/Baldi18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/UrbanSB18,
author = {Gregor Urban and
Niranjan Subrahmanya and
Pierre Baldi},
title = {Inner and Outer Recursive Neural Networks for Chemoinformatics Applications},
journal = {J. Chem. Inf. Model.},
volume = {58},
number = {2},
pages = {207--211},
year = {2018},
url = {https://doi.org/10.1021/acs.jcim.7b00384},
doi = {10.1021/ACS.JCIM.7B00384},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcisd/UrbanSB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/EngBBMMKBK18,
author = {Clara H. Eng and
Tyler W. H. Backman and
Constance B. Bailey and
Christophe N. Magnan and
H{\'{e}}ctor Garc{\'{\i}}a Mart{\'{\i}}n and
Leonard Katz and
Pierre Baldi and
Jay D. Keasling},
title = {ClusterCAD: a computational platform for type {I} modular polyketide
synthase design},
journal = {Nucleic Acids Res.},
volume = {46},
number = {Database-Issue},
pages = {D509--D515},
year = {2018},
url = {https://doi.org/10.1093/nar/gkx893},
doi = {10.1093/NAR/GKX893},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/EngBBMMKBK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CegliaLCAESB18,
author = {Nicholas Ceglia and
Yu Liu and
Siwei Chen and
Forest Agostinelli and
Kristin Eckel{-}Mahan and
Paolo Sassone{-}Corsi and
Pierre Baldi},
title = {CircadiOmics: circadian omic web portal},
journal = {Nucleic Acids Res.},
volume = {46},
number = {Webserver-Issue},
pages = {W157--W162},
year = {2018},
url = {https://doi.org/10.1093/nar/gky441},
doi = {10.1093/NAR/GKY441},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/CegliaLCAESB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nn/BaldiS18,
author = {Pierre Baldi and
Peter J. Sadowski},
title = {Learning in the machine: Recirculation is random backpropagation},
journal = {Neural Networks},
volume = {108},
pages = {479--494},
year = {2018},
url = {https://doi.org/10.1016/j.neunet.2018.09.006},
doi = {10.1016/J.NEUNET.2018.09.006},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nn/BaldiS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/BaldiV18,
author = {Pierre Baldi and
Roman Vershynin},
editor = {Samy Bengio and
Hanna M. Wallach and
Hugo Larochelle and
Kristen Grauman and
Nicol{\`{o}} Cesa{-}Bianchi and
Roman Garnett},
title = {On Neuronal Capacity},
booktitle = {Advances in Neural Information Processing Systems 31: Annual Conference
on Neural Information Processing Systems 2018, NeurIPS 2018, December
3-8, 2018, Montr{\'{e}}al, Canada},
pages = {7740--7749},
year = {2018},
url = {https://proceedings.neurips.cc/paper/2018/hash/a292f1c5874b2be8395ffd75f313937f-Abstract.html},
timestamp = {Mon, 16 May 2022 15:41:51 +0200},
biburl = {https://dblp.org/rec/conf/nips/BaldiV18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sigsoft/SainiFLBL18,
author = {Vaibhav Saini and
Farima Farmahinifarahani and
Yadong Lu and
Pierre Baldi and
Cristina V. Lopes},
editor = {Gary T. Leavens and
Alessandro Garcia and
Corina S. Pasareanu},
title = {Oreo: detection of clones in the twilight zone},
booktitle = {Proceedings of the 2018 {ACM} Joint Meeting on European Software Engineering
Conference and Symposium on the Foundations of Software Engineering,
{ESEC/SIGSOFT} {FSE} 2018, Lake Buena Vista, FL, USA, November 04-09,
2018},
pages = {354--365},
publisher = {{ACM}},
year = {2018},
url = {https://doi.org/10.1145/3236024.3236026},
doi = {10.1145/3236024.3236026},
timestamp = {Tue, 01 Feb 2022 10:45:16 +0100},
biburl = {https://dblp.org/rec/conf/sigsoft/SainiFLBL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1805-07470,
author = {Stephen McAleer and
Forest Agostinelli and
Alexander Shmakov and
Pierre Baldi},
title = {Solving the Rubik's Cube Without Human Knowledge},
journal = {CoRR},
volume = {abs/1805.07470},
year = {2018},
url = {http://arxiv.org/abs/1805.07470},
eprinttype = {arXiv},
eprint = {1805.07470},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1805-07470.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1806-05837,
author = {Vaibhav Saini and
Farima Farmahinifarahani and
Yadong Lu and
Pierre Baldi and
Cristina V. Lopes},
title = {Oreo: Detection of Clones in the Twilight Zone},
journal = {CoRR},
volume = {abs/1806.05837},
year = {2018},
url = {http://arxiv.org/abs/1806.05837},
eprinttype = {arXiv},
eprint = {1806.05837},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1806-05837.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1812-05195,
author = {Vaibhav Saini and
Farima Farmahinifarahani and
Yadong Lu and
Di Yang and
Pedro Martins and
Hitesh Sajnani and
Pierre Baldi and
Cristina V. Lopes},
title = {Towards Automating Precision Studies of Clone Detectors},
journal = {CoRR},
volume = {abs/1812.05195},
year = {2018},
url = {http://arxiv.org/abs/1812.05195},
eprinttype = {arXiv},
eprint = {1812.05195},
timestamp = {Tue, 01 Jan 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1812-05195.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuSBWSB17,
author = {Yu Liu and
Sha Sun and
Timothy Bredy and
Marcelo A. Wood and
Robert C. Spitale and
Pierre Baldi},
title = {MotifMap-RNA: a genome-wide map of {RBP} binding sites},
journal = {Bioinform.},
volume = {33},
number = {13},
pages = {2029--2031},
year = {2017},
url = {https://doi.org/10.1093/bioinformatics/btx087},
doi = {10.1093/BIOINFORMATICS/BTX087},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuSBWSB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cbm/WangFLYSB17,
author = {Juan Wang and
Zhiyuan Fang and
Ning Lang and
Huishu Yuan and
Min{-}Ying Su and
Pierre Baldi},
title = {A multi-resolution approach for spinal metastasis detection using
deep Siamese neural networks},
journal = {Comput. Biol. Medicine},
volume = {84},
pages = {137--146},
year = {2017},
url = {https://doi.org/10.1016/j.compbiomed.2017.03.024},
doi = {10.1016/J.COMPBIOMED.2017.03.024},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cbm/WangFLYSB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nn/BaldiSL17,
author = {Pierre Baldi and
Peter J. Sadowski and
Zhiqin Lu},
title = {Learning in the machine: The symmetries of the deep learning channel},
journal = {Neural Networks},
volume = {95},
pages = {110--133},
year = {2017},
url = {https://doi.org/10.1016/j.neunet.2017.08.008},
doi = {10.1016/J.NEUNET.2017.08.008},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nn/BaldiSL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/WangDBZIMB17,
author = {Juan Wang and
Huanjun Ding and
Fatemeh Azamian Bidgoli and
Brian Zhou and
Carlos Iribarren and
Sabee Molloi and
Pierre Baldi},
title = {Detecting Cardiovascular Disease from Mammograms With Deep Learning},
journal = {{IEEE} Trans. Medical Imaging},
volume = {36},
number = {5},
pages = {1172--1181},
year = {2017},
url = {https://doi.org/10.1109/TMI.2017.2655486},
doi = {10.1109/TMI.2017.2655486},
timestamp = {Thu, 18 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tmi/WangDBZIMB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/birthday/SadowskiB17,
author = {Peter J. Sadowski and
Pierre Baldi},
editor = {Lev I. Rozonoer and
Boris G. Mirkin and
Ilya Muchnik},
title = {Deep Learning in the Natural Sciences: Applications to Physics},
booktitle = {Braverman Readings in Machine Learning. Key Ideas from Inception to
Current State - International Conference Commemorating the 40th Anniversary
of Emmanuil Braverman's Decease, Boston, MA, USA, April 28-30, 2017,
Invited Talks},
series = {Lecture Notes in Computer Science},
volume = {11100},
pages = {269--297},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-99492-5\_12},
doi = {10.1007/978-3-319-99492-5\_12},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/birthday/SadowskiB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/birthday/AgostinelliHSB17,
author = {Forest Agostinelli and
Guillaume Hocquet and
Sameer Singh and
Pierre Baldi},
editor = {Lev I. Rozonoer and
Boris G. Mirkin and
Ilya Muchnik},
title = {From Reinforcement Learning to Deep Reinforcement Learning: An Overview},
booktitle = {Braverman Readings in Machine Learning. Key Ideas from Inception to
Current State - International Conference Commemorating the 40th Anniversary
of Emmanuil Braverman's Decease, Boston, MA, USA, April 28-30, 2017,
Invited Talks},
series = {Lecture Notes in Computer Science},
volume = {11100},
pages = {298--328},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-99492-5\_13},
doi = {10.1007/978-3-319-99492-5\_13},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/birthday/AgostinelliHSB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/SadowskiRAYB17,
author = {Peter J. Sadowski and
Balint Radics and
Ananya and
Yasunori Yamazaki and
Pierre Baldi},
title = {Efficient Antihydrogen Detection in Antimatter Physics by Deep Learning},
journal = {CoRR},
volume = {abs/1706.01826},
year = {2017},
url = {http://arxiv.org/abs/1706.01826},
eprinttype = {arXiv},
eprint = {1706.01826},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/SadowskiRAYB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1712-08608,
author = {Pierre Baldi and
Peter J. Sadowski and
Zhiqin Lu},
title = {Learning in the Machine: the Symmetries of the Deep Learning Channel},
journal = {CoRR},
volume = {abs/1712.08608},
year = {2017},
url = {http://arxiv.org/abs/1712.08608},
eprinttype = {arXiv},
eprint = {1712.08608},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1712-08608.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GaliezMCB16,
author = {Clovis Galiez and
Christophe N. Magnan and
Fran{\c{c}}ois Coste and
Pierre Baldi},
title = {VIRALpro: a tool to identify viral capsid and tail sequences},
journal = {Bioinform.},
volume = {32},
number = {9},
pages = {1405--1407},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv727},
doi = {10.1093/BIOINFORMATICS/BTV727},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GaliezMCB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BaldiP16,
author = {Pierre Baldi and
Teresa M. Przytycka},
title = {{ISMB} 2016 Proceedings},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {1--2},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw326},
doi = {10.1093/BIOINFORMATICS/BTW326},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BaldiP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AgostinelliCSSB16,
author = {Forest Agostinelli and
Nicholas Ceglia and
Babak Shahbaba and
Paolo Sassone{-}Corsi and
Pierre Baldi},
title = {What time is it? Deep learning approaches for circadian rhythms},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {8--17},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw243},
doi = {10.1093/BIOINFORMATICS/BTW243},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AgostinelliCSSB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AgostinelliCSSB16a,
author = {Forest Agostinelli and
Nicholas Ceglia and
Babak Shahbaba and
Paolo Sassone{-}Corsi and
Pierre Baldi},
title = {What time is it? Deep learning approaches for circadian rhythms},
journal = {Bioinform.},
volume = {32},
number = {19},
pages = {3051},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw504},
doi = {10.1093/BIOINFORMATICS/BTW504},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AgostinelliCSSB16a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/SadowskiFSB16,
author = {Peter J. Sadowski and
David Fooshee and
Niranjan Subrahmanya and
Pierre Baldi},
title = {Synergies Between Quantum Mechanics and Machine Learning in Reaction
Prediction},
journal = {J. Chem. Inf. Model.},
volume = {56},
number = {11},
pages = {2125--2128},
year = {2016},
url = {https://doi.org/10.1021/acs.jcim.6b00351},
doi = {10.1021/ACS.JCIM.6B00351},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcisd/SadowskiFSB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nn/BaldiS16,
author = {Pierre Baldi and
Peter J. Sadowski},
title = {A theory of local learning, the learning channel, and the optimality
of backpropagation},
journal = {Neural Networks},
volume = {83},
pages = {51--74},
year = {2016},
url = {https://doi.org/10.1016/j.neunet.2016.07.006},
doi = {10.1016/J.NEUNET.2016.07.006},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nn/BaldiS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icmla/RacahKSBTOBP16,
author = {Evan Racah and
Seyoon Ko and
Peter J. Sadowski and
Wahid Bhimji and
Craig Tull and
Sang{-}Yun Oh and
Pierre Baldi and
Prabhat},
title = {Revealing Fundamental Physics from the Daya Bay Neutrino Experiment
Using Deep Neural Networks},
booktitle = {15th {IEEE} International Conference on Machine Learning and Applications,
{ICMLA} 2016, Anaheim, CA, USA, December 18-20, 2016},
pages = {892--897},
publisher = {{IEEE} Computer Society},
year = {2016},
url = {https://doi.org/10.1109/ICMLA.2016.0160},
doi = {10.1109/ICMLA.2016.0160},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icmla/RacahKSBTOBP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/RacahKSBTOBP16,
author = {Evan Racah and
Seyoon Ko and
Peter J. Sadowski and
Wahid Bhimji and
Craig Tull and
Sang{-}Yun Oh and
Pierre Baldi and
Prabhat},
title = {Revealing Fundamental Physics from the Daya Bay Neutrino Experiment
using Deep Neural Networks},
journal = {CoRR},
volume = {abs/1601.07621},
year = {2016},
url = {http://arxiv.org/abs/1601.07621},
eprinttype = {arXiv},
eprint = {1601.07621},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/RacahKSBTOBP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/BaldiCFSW16,
author = {Pierre Baldi and
Kyle Cranmer and
Taylor Faucett and
Peter J. Sadowski and
Daniel Whiteson},
title = {Parameterized Machine Learning for High-Energy Physics},
journal = {CoRR},
volume = {abs/1601.07913},
year = {2016},
url = {http://arxiv.org/abs/1601.07913},
eprinttype = {arXiv},
eprint = {1601.07913},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/BaldiCFSW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/BaldiSL16,
author = {Pierre Baldi and
Peter J. Sadowski and
Zhiqin Lu},
title = {Learning in the Machine: Random Backpropagation and the Learning Channel},
journal = {CoRR},
volume = {abs/1612.02734},
year = {2016},
url = {http://arxiv.org/abs/1612.02734},
eprinttype = {arXiv},
eprint = {1612.02734},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/BaldiSL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PatelCZESB15,
author = {Vishal R. Patel and
Nicholas Ceglia and
Michael Zeller and
Kristin Eckel{-}Mahan and
Paolo Sassone{-}Corsi and
Pierre Baldi},
title = {The pervasiveness and plasticity of circadian oscillations: the coupled
circadian-oscillators framework},
journal = {Bioinform.},
volume = {31},
number = {19},
pages = {3181--3188},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv353},
doi = {10.1093/BIOINFORMATICS/BTV353},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PatelCZESB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcheminf/LusciBFSB15,
author = {Alessandro Lusci and
Michael R. Browning and
David Fooshee and
S. Joshua Swamidass and
Pierre Baldi},
title = {Accurate and efficient target prediction using a potency-sensitive
influence-relevance voter},
journal = {J. Cheminformatics},
volume = {7},
pages = {63:1--63:13},
year = {2015},
url = {https://doi.org/10.1186/s13321-015-0110-6},
doi = {10.1186/S13321-015-0110-6},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcheminf/LusciBFSB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:journals/corr/AgostinelliHSB14,
author = {Forest Agostinelli and
Matthew D. Hoffman and
Peter J. Sadowski and
Pierre Baldi},
editor = {Yoshua Bengio and
Yann LeCun},
title = {Learning Activation Functions to Improve Deep Neural Networks},
booktitle = {3rd International Conference on Learning Representations, {ICLR} 2015,
San Diego, CA, USA, May 7-9, 2015, Workshop Track Proceedings},
year = {2015},
url = {http://arxiv.org/abs/1412.6830},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/AgostinelliHSB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/BaldiS15,
author = {Pierre Baldi and
Peter J. Sadowski},
title = {The Ebb and Flow of Deep Learning: a Theory of Local Learning},
journal = {CoRR},
volume = {abs/1506.06472},
year = {2015},
url = {http://arxiv.org/abs/1506.06472},
eprinttype = {arXiv},
eprint = {1506.06472},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/BaldiS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ai/BaldiS14,
author = {Pierre Baldi and
Peter J. Sadowski},
title = {The dropout learning algorithm},
journal = {Artif. Intell.},
volume = {210},
pages = {78--122},
year = {2014},
url = {https://doi.org/10.1016/j.artint.2014.02.004},
doi = {10.1016/J.ARTINT.2014.02.004},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ai/BaldiS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NagataRB14,
author = {Ken Nagata and
Arlo Z. Randall and
Pierre Baldi},
title = {Incorporating post-translational modifications and unnatural amino
acids into high-throughput modeling of protein structures},
journal = {Bioinform.},
volume = {30},
number = {12},
pages = {1681--1689},
year = {2014},
url = {https://doi.org/10.1093/bioinformatics/btu106},
doi = {10.1093/BIOINFORMATICS/BTU106},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NagataRB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MagnanB14,
author = {Christophe N. Magnan and
Pierre Baldi},
title = {SSpro/ACCpro 5: almost perfect prediction of protein secondary structure
and relative solvent accessibility using profiles, machine learning
and structural similarity},
journal = {Bioinform.},
volume = {30},
number = {18},
pages = {2592--2597},
year = {2014},
url = {https://doi.org/10.1093/bioinformatics/btu352},
doi = {10.1093/BIOINFORMATICS/BTU352},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MagnanB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZellerMPRSB14,
author = {Michael Zeller and
Christophe N. Magnan and
Vishal R. Patel and
Paul Rigor and
Leonard Sender and
Pierre Baldi},
title = {A Genomic Analysis Pipeline and Its Application to Pediatric Cancers},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {11},
number = {5},
pages = {826--839},
year = {2014},
url = {https://doi.org/10.1109/TCBB.2014.2330616},
doi = {10.1109/TCBB.2014.2330616},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZellerMPRSB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/ChiccoSB14,
author = {Davide Chicco and
Peter J. Sadowski and
Pierre Baldi},
editor = {Pierre Baldi and
Wei Wang},
title = {Deep autoencoder neural networks for gene ontology annotation predictions},
booktitle = {Proceedings of the 5th {ACM} Conference on Bioinformatics, Computational
Biology, and Health Informatics, {BCB} '14, Newport Beach, California,
USA, September 20-23, 2014},
pages = {533--540},
publisher = {{ACM}},
year = {2014},
url = {https://doi.org/10.1145/2649387.2649442},
doi = {10.1145/2649387.2649442},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/ChiccoSB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/SadowskiCWB14,
author = {Peter J. Sadowski and
Julian Collado and
Daniel Whiteson and
Pierre Baldi},
title = {Deep Learning, Dark Knowledge, and Dark Matter},
booktitle = {Workshop on High-energy Physics and Machine Learning, {HEPML} 2014,
held at {NIPS} 2014, Montreal, Quebec, Canada, December 8-13, 2014},
series = {{JMLR} Workshop and Conference Proceedings},
volume = {42},
pages = {81--87},
publisher = {JMLR.org},
year = {2014},
url = {http://proceedings.mlr.press/v42/sado14.html},
timestamp = {Wed, 29 May 2019 08:41:44 +0200},
biburl = {https://dblp.org/rec/conf/nips/SadowskiCWB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/SadowskiWB14,
author = {Peter J. Sadowski and
Daniel Whiteson and
Pierre Baldi},
editor = {Zoubin Ghahramani and
Max Welling and
Corinna Cortes and
Neil D. Lawrence and
Kilian Q. Weinberger},
title = {Searching for Higgs Boson Decay Modes with Deep Learning},
booktitle = {Advances in Neural Information Processing Systems 27: Annual Conference
on Neural Information Processing Systems 2014, December 8-13 2014,
Montreal, Quebec, Canada},
pages = {2393--2401},
year = {2014},
url = {https://proceedings.neurips.cc/paper/2014/hash/e1d5be1c7f2f456670de3d53c7b54f4a-Abstract.html},
timestamp = {Mon, 16 May 2022 15:41:51 +0200},
biburl = {https://dblp.org/rec/conf/nips/SadowskiWB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pkdd/YarkonyBBH14,
author = {Julian Yarkony and
Thorsten Beier and
Pierre Baldi and
Fred A. Hamprecht},
editor = {Annalisa Appice and
Michelangelo Ceci and
Corrado Loglisci and
Giuseppe Manco and
Elio Masciari and
Zbigniew W. Ras},
title = {Parallel Multicut Segmentation via Dual Decomposition},
booktitle = {New Frontiers in Mining Complex Patterns - Third International Workshop,
{NFMCP} 2014, Held in Conjunction with {ECML-PKDD} 2014, Nancy, France,
September 19, 2014, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {8983},
pages = {56--68},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-17876-9\_4},
doi = {10.1007/978-3-319-17876-9\_4},
timestamp = {Thu, 05 Dec 2019 17:07:15 +0100},
biburl = {https://dblp.org/rec/conf/pkdd/YarkonyBBH14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/bcb/2014,
editor = {Pierre Baldi and
Wei Wang},
title = {Proceedings of the 5th {ACM} Conference on Bioinformatics, Computational
Biology, and Health Informatics, {BCB} '14, Newport Beach, California,
USA, September 20-23, 2014},
publisher = {{ACM}},
year = {2014},
url = {https://doi.org/10.1145/2649387},
doi = {10.1145/2649387},
isbn = {978-1-4503-2894-4},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/2014.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/BaldiSW14,
author = {Pierre Baldi and
Peter J. Sadowski and
Daniel Whiteson},
title = {Enhanced Higgs to {\textdollar}{\(\tau\)}{\^{}}+{\(\tau\)}{\^{}}-{\textdollar}
Searches with Deep Learning},
journal = {CoRR},
volume = {abs/1410.3469},
year = {2014},
url = {http://arxiv.org/abs/1410.3469},
eprinttype = {arXiv},
eprint = {1410.3469},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/BaldiSW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/shonan-reports/BaldiFP14,
author = {Pierre Baldi and
Kenji Fukumizu and
Tomaso A. Poggio},
title = {Deep Learning: Theory, Algorithms, and Applications {(NII} Shonan
Meeting 2014-5)},
journal = {{NII} Shonan Meet. Rep.},
volume = {2014},
year = {2014},
url = {https://shonan.nii.ac.jp/seminars/040/},
timestamp = {Thu, 04 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/shonan-reports/BaldiFP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChangB13,
author = {Ivan Chang and
Pierre Baldi},
title = {A unifying kinetic framework for modeling oxidoreductase-catalyzed
reactions},
journal = {Bioinform.},
volume = {29},
number = {10},
pages = {1299--1307},
year = {2013},
url = {https://doi.org/10.1093/bioinformatics/btt140},
doi = {10.1093/BIOINFORMATICS/BTT140},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChangB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/LusciPB13,
author = {Alessandro Lusci and
Gianluca Pollastri and
Pierre Baldi},
title = {Deep Architectures and Deep Learning in Chemoinformatics: The Prediction
of Aqueous Solubility for Drug-Like Molecules},
journal = {J. Chem. Inf. Model.},
volume = {53},
number = {7},
pages = {1563--1575},
year = {2013},
url = {https://doi.org/10.1021/ci400187y},
doi = {10.1021/CI400187Y},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcisd/LusciPB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/FoosheeAB13,
author = {David Fooshee and
Alessio Andronico and
Pierre Baldi},
title = {ReactionMap: An Efficient Atom-Mapping Algorithm for Chemical Reactions},
journal = {J. Chem. Inf. Model.},
volume = {53},
number = {11},
pages = {2812--2819},
year = {2013},
url = {https://doi.org/10.1021/ci400326p},
doi = {10.1021/CI400326P},
timestamp = {Fri, 06 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcisd/FoosheeAB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/SadowskiB13,
author = {Peter J. Sadowski and
Pierre Baldi},
title = {Small-Molecule 3D Structure Prediction Using Open Crystallography
Data},
journal = {J. Chem. Inf. Model.},
volume = {53},
number = {12},
pages = {3127--3130},
year = {2013},
url = {https://doi.org/10.1021/ci4005282},
doi = {10.1021/CI4005282},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcisd/SadowskiB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/BaldiS13,
author = {Pierre Baldi and
Peter J. Sadowski},
editor = {Christopher J. C. Burges and
L{\'{e}}on Bottou and
Zoubin Ghahramani and
Kilian Q. Weinberger},
title = {Understanding Dropout},
booktitle = {Advances in Neural Information Processing Systems 26: 27th Annual
Conference on Neural Information Processing Systems 2013. Proceedings
of a meeting held December 5-8, 2013, Lake Tahoe, Nevada, United States},
pages = {2814--2822},
year = {2013},
url = {https://proceedings.neurips.cc/paper/2013/hash/71f6278d140af599e06ad9bf1ba03cb0-Abstract.html},
timestamp = {Mon, 16 May 2022 15:41:51 +0200},
biburl = {https://dblp.org/rec/conf/nips/BaldiS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wirn/NapolitanoTB13,
author = {Francesco Napolitano and
Roberto Tagliaferri and
Pierre Baldi},
editor = {Simone Bassis and
Anna Esposito and
Francesco Carlo Morabito},
title = {An Adaptive Reference Point Approach to Efficiently Search Large Chemical
Databases},
booktitle = {Recent Advances of Neural Network Models and Applications - Proceedings
of the 23rd Workshop of the Italian Neural Networks Society, {WIRN}
2013, Vietri sul Mare, Salerno, Italy, May 23-25, 2013},
series = {Smart Innovation, Systems and Technologies},
volume = {26},
pages = {63--74},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-319-04129-2\_7},
doi = {10.1007/978-3-319-04129-2\_7},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wirn/NapolitanoTB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LenaNB12,
author = {Pietro di Lena and
Ken Nagata and
Pierre Baldi},
title = {Deep architectures for protein contact map prediction},
journal = {Bioinform.},
volume = {28},
number = {19},
pages = {2449--2457},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts475},
doi = {10.1093/BIOINFORMATICS/BTS475},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LenaNB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dcc/Baldi12,
author = {Pierre Baldi},
title = {Boolean autoencoders and hypercube clustering complexity},
journal = {Des. Codes Cryptogr.},
volume = {65},
number = {3},
pages = {383--403},
year = {2012},
url = {https://doi.org/10.1007/s10623-012-9719-x},
doi = {10.1007/S10623-012-9719-X},
timestamp = {Mon, 17 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/dcc/Baldi12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/elearn/BaldiL12,
author = {Pierre Baldi and
Cristina Videira Lopes},
title = {The Universal Campus: An open virtual 3-D world infrastructure for
research and education},
journal = {eLearn Mag.},
volume = {2012},
number = {4},
pages = {6},
year = {2012},
url = {https://doi.org/10.1145/2181207.2206888},
doi = {10.1145/2181207.2206888},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/elearn/BaldiL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/NasrVLB12,
author = {Ramzi Nasr and
Rares Vernica and
Chen Li and
Pierre Baldi},
title = {Speeding Up Chemical Searches Using the Inverted Index: The Convergence
of Chemoinformatics and Text Search Methods},
journal = {J. Chem. Inf. Model.},
volume = {52},
number = {4},
pages = {891--900},
year = {2012},
url = {https://doi.org/10.1021/ci200552r},
doi = {10.1021/CI200552R},
timestamp = {Fri, 06 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcisd/NasrVLB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/KayalaB12,
author = {Matthew A. Kayala and
Pierre Baldi},
title = {ReactionPredictor: Prediction of Complex Chemical Reactions at the
Mechanistic Level Using Machine Learning},
journal = {J. Chem. Inf. Model.},
volume = {52},
number = {10},
pages = {2526--2540},
year = {2012},
url = {https://doi.org/10.1021/ci3003039},
doi = {10.1021/CI3003039},
timestamp = {Fri, 06 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcisd/KayalaB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KayalaB12,
author = {Matthew A. Kayala and
Pierre Baldi},
title = {Cyber-T web server: differential analysis of high-throughput data},
journal = {Nucleic Acids Res.},
volume = {40},
number = {Web-Server-Issue},
pages = {553--559},
year = {2012},
url = {https://doi.org/10.1093/nar/gks420},
doi = {10.1093/NAR/GKS420},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KayalaB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nn/BaldiL12,
author = {Pierre Baldi and
Zhiqin Lu},
title = {Complex-valued autoencoders},
journal = {Neural Networks},
volume = {33},
pages = {136--147},
year = {2012},
url = {https://doi.org/10.1016/j.neunet.2012.04.011},
doi = {10.1016/J.NEUNET.2012.04.011},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nn/BaldiL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/LenaBN12,
author = {Pietro Di Lena and
Pierre Baldi and
Ken Nagata},
editor = {Peter L. Bartlett and
Fernando C. N. Pereira and
Christopher J. C. Burges and
L{\'{e}}on Bottou and
Kilian Q. Weinberger},
title = {Deep Spatio-Temporal Architectures and Learning for Protein Structure
Prediction},
booktitle = {Advances in Neural Information Processing Systems 25: 26th Annual
Conference on Neural Information Processing Systems 2012. Proceedings
of a meeting held December 3-6, 2012, Lake Tahoe, Nevada, United States},
pages = {521--529},
year = {2012},
url = {https://proceedings.neurips.cc/paper/2012/hash/8c19f571e251e61cb8dd3612f26d5ecf-Abstract.html},
timestamp = {Mon, 16 May 2022 15:41:51 +0200},
biburl = {https://dblp.org/rec/conf/nips/LenaBN12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:journals/jmlr/Baldi12,
author = {Pierre Baldi},
editor = {Isabelle Guyon and
Gideon Dror and
Vincent Lemaire and
Graham W. Taylor and
Daniel L. Silver},
title = {Autoencoders, Unsupervised Learning, and Deep Architectures},
booktitle = {Unsupervised and Transfer Learning - Workshop held at {ICML} 2011,
Bellevue, Washington, USA, July 2, 2011},
series = {{JMLR} Proceedings},
volume = {27},
pages = {37--50},
publisher = {JMLR.org},
year = {2012},
url = {http://proceedings.mlr.press/v27/baldi12a.html},
timestamp = {Wed, 02 Sep 2020 16:33:18 +0200},
biburl = {https://dblp.org/rec/journals/jmlr/Baldi12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@book{DBLP:books/daglib/0030827,
author = {Pierre Baldi and
G. Wesley Hatfield},
title = {{DNA} Microarrays and Gene Expression - From Experiments to Data Analysis
and Modeling},
publisher = {Cambridge University Press},
year = {2011},
url = {http://www.cambridge.org/de/knowledge/isbn/item5731814/DNA\%20Microarrays\%20and\%20Gene\%20Expression/?site\_locale=de\_DE},
isbn = {978-0-521-17635-4},
timestamp = {Tue, 02 Apr 2013 01:00:00 +0200},
biburl = {https://dblp.org/rec/books/daglib/0030827.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DailyPRXB11,
author = {Kenneth Daily and
Vishal R. Patel and
Paul Rigor and
Xiaohui Xie and
Pierre Baldi},
title = {MotifMap: integrative genome-wide maps of regulatory motif sites for
model species},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {495},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-495},
doi = {10.1186/1471-2105-12-495},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DailyPRXB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/AndronicoRBB11,
author = {Alessio Andronico and
Arlo Z. Randall and
Ryan W. Benz and
Pierre Baldi},
title = {Data-Driven High-Throughput Prediction of the 3-D Structure of Small
Molecules: Review and Progress},
journal = {J. Chem. Inf. Model.},
volume = {51},
number = {4},
pages = {760--776},
year = {2011},
url = {https://doi.org/10.1021/ci100223t},
doi = {10.1021/CI100223T},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcisd/AndronicoRBB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/KayalaACB11,
author = {Matthew A. Kayala and
Chlo{\'{e}}{-}Agathe Azencott and
Jonathan H. Chen and
Pierre Baldi},
title = {Learning to Predict Chemical Reactions},
journal = {J. Chem. Inf. Model.},
volume = {51},
number = {9},
pages = {2209--2222},
year = {2011},
url = {https://doi.org/10.1021/ci200207y},
doi = {10.1021/CI200207Y},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcisd/KayalaACB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/Baldi11,
author = {Pierre Baldi},
title = {Data-Driven High-Throughput Prediction of the 3-D Structure of Small
Molecules: Review and Progress. {A} Response to the Letter by the
Cambridge Crystallographic Data Centre},
journal = {J. Chem. Inf. Model.},
volume = {51},
number = {12},
pages = {3029},
year = {2011},
url = {https://doi.org/10.1021/ci200460z},
doi = {10.1021/CI200460Z},
timestamp = {Fri, 06 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcisd/Baldi11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ccs/BaldiBCGT11,
author = {Pierre Baldi and
Roberta Baronio and
Emiliano De Cristofaro and
Paolo Gasti and
Gene Tsudik},
editor = {Yan Chen and
George Danezis and
Vitaly Shmatikov},
title = {Countering {GATTACA:} efficient and secure testing of fully-sequenced
human genomes},
booktitle = {Proceedings of the 18th {ACM} Conference on Computer and Communications
Security, {CCS} 2011, Chicago, Illinois, USA, October 17-21, 2011},
pages = {691--702},
publisher = {{ACM}},
year = {2011},
url = {https://doi.org/10.1145/2046707.2046785},
doi = {10.1145/2046707.2046785},
timestamp = {Tue, 10 Nov 2020 19:56:39 +0100},
biburl = {https://dblp.org/rec/conf/ccs/BaldiBCGT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/KayalaB11,
author = {Matthew A. Kayala and
Pierre Baldi},
editor = {John Shawe{-}Taylor and
Richard S. Zemel and
Peter L. Bartlett and
Fernando C. N. Pereira and
Kilian Q. Weinberger},
title = {A Machine Learning Approach to Predict Chemical Reactions},
booktitle = {Advances in Neural Information Processing Systems 24: 25th Annual
Conference on Neural Information Processing Systems 2011. Proceedings
of a meeting held 12-14 December 2011, Granada, Spain},
pages = {747--755},
year = {2011},
url = {https://proceedings.neurips.cc/paper/2011/hash/b337e84de8752b27eda3a12363109e80-Abstract.html},
timestamp = {Mon, 16 May 2022 15:41:51 +0200},
biburl = {https://dblp.org/rec/conf/nips/KayalaB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1107-3593,
author = {David Eppstein and
Michael T. Goodrich and
Pierre Baldi},
title = {Privacy-Enhanced Methods for Comparing Compressed {DNA} Sequences},
journal = {CoRR},
volume = {abs/1107.3593},
year = {2011},
url = {http://arxiv.org/abs/1107.3593},
eprinttype = {arXiv},
eprint = {1107.3593},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1107-3593.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1108-4135,
author = {Pierre Baldi and
Sholeh Forouzan and
Zhiqin Lu},
title = {Complex-Valued Autoencoders},
journal = {CoRR},
volume = {abs/1108.4135},
year = {2011},
url = {http://arxiv.org/abs/1108.4135},
eprinttype = {arXiv},
eprint = {1108.4135},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1108-4135.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1110-2478,
author = {Pierre Baldi and
Roberta Baronio and
Emiliano De Cristofaro and
Paolo Gasti and
Gene Tsudik},
title = {Countering Gattaca: Efficient and Secure Testing of Fully-Sequenced
Human Genomes},
journal = {CoRR},
volume = {abs/1110.2478},
year = {2011},
url = {http://arxiv.org/abs/1110.2478},
eprinttype = {arXiv},
eprint = {1110.2478},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1110-2478.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SwamidassADB10,
author = {Sanjay Joshua Swamidass and
Chlo{\'{e}}{-}Agathe Azencott and
Kenny Daily and
Pierre Baldi},
title = {A {CROC} stronger than {ROC:} measuring, visualizing and optimizing
early retrieval},
journal = {Bioinform.},
volume = {26},
number = {10},
pages = {1348--1356},
year = {2010},
url = {https://doi.org/10.1093/bioinformatics/btq140},
doi = {10.1093/BIOINFORMATICS/BTQ140},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SwamidassADB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MagnanZKVRFB10,
author = {Christophe N. Magnan and
Michael Zeller and
Matthew A. Kayala and
Adam Vigil and
Arlo Z. Randall and
Philip L. Felgner and
Pierre Baldi},
title = {High-throughput prediction of protein antigenicity using protein microarray
data},
journal = {Bioinform.},
volume = {26},
number = {23},
pages = {2936--2943},
year = {2010},
url = {https://doi.org/10.1093/bioinformatics/btq551},
doi = {10.1093/BIOINFORMATICS/BTQ551},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MagnanZKVRFB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DailyRCXB10,
author = {Kenny Daily and
Paul Rigor and
Scott Christley and
Xiaohui Xie and
Pierre Baldi},
title = {Data structures and compression algorithms for high-throughput sequencing
technologies},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {514},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-514},
doi = {10.1186/1471-2105-11-514},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DailyRCXB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/BaldiN10,
author = {Pierre Baldi and
Ramzi Nasr},
title = {When is Chemical Similarity Significant? The Statistical Distribution
of Chemical Similarity Scores and Its Extreme Values},
journal = {J. Chem. Inf. Model.},
volume = {50},
number = {7},
pages = {1205--1222},
year = {2010},
url = {https://doi.org/10.1021/ci100010v},
doi = {10.1021/CI100010V},
timestamp = {Fri, 06 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcisd/BaldiN10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/NasrHB10,
author = {Ramzi Nasr and
Daniel S. Hirschberg and
Pierre Baldi},
title = {Hashing Algorithms and Data Structures for Rapid Searches of Fingerprint
Vectors},
journal = {J. Chem. Inf. Model.},
volume = {50},
number = {8},
pages = {1358--1368},
year = {2010},
url = {https://doi.org/10.1021/ci100132g},
doi = {10.1021/CI100132G},
timestamp = {Fri, 06 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcisd/NasrHB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nn/BaldiI10,
author = {Pierre Baldi and
Laurent Itti},
title = {Of bits and wows: {A} Bayesian theory of surprise with applications
to attention},
journal = {Neural Networks},
volume = {23},
number = {5},
pages = {649--666},
year = {2010},
url = {https://doi.org/10.1016/j.neunet.2009.12.007},
doi = {10.1016/J.NEUNET.2009.12.007},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nn/BaldiI10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/WhisenantHBRKGHBB10,
author = {Thomas C. Whisenant and
David T. Ho and
Ryan W. Benz and
Jeffrey S. Rogers and
Robyn M. Kaake and
Elizabeth A. Gordon and
Lan Huang and
Pierre Baldi and
Lee Bardwell},
title = {Computational Prediction and Experimental Verification of New {MAP}
Kinase Docking Sites and Substrates Including Gli Transcription Factors},
journal = {PLoS Comput. Biol.},
volume = {6},
number = {8},
year = {2010},
url = {https://doi.org/10.1371/journal.pcbi.1000908},
doi = {10.1371/JOURNAL.PCBI.1000908},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/WhisenantHBRKGHBB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/sadm/JavanmardiLB10,
author = {Sara Javanmardi and
Cristina Videira Lopes and
Pierre Baldi},
title = {Modeling user reputation in wikis},
journal = {Stat. Anal. Data Min.},
volume = {3},
number = {2},
pages = {126--139},
year = {2010},
url = {https://doi.org/10.1002/sam.10070},
doi = {10.1002/SAM.10070},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/sadm/JavanmardiLB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ijcnn/NapolitanoTB10,
author = {Francesco Napolitano and
Roberto Tagliaferri and
Pierre Baldi},
title = {A scalable reference-point based algorithm to efficiently search large
chemical databases},
booktitle = {International Joint Conference on Neural Networks, {IJCNN} 2010, Barcelona,
Spain, 18-23 July, 2010},
pages = {1--6},
publisher = {{IEEE}},
year = {2010},
url = {https://doi.org/10.1109/IJCNN.2010.5596608},
doi = {10.1109/IJCNN.2010.5596608},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ijcnn/NapolitanoTB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/seke/LinsteadHLB10,
author = {Erik Linstead and
Lindsey Hughes and
Cristina Videira Lopes and
Pierre Baldi},
title = {Information-Theoretic Metrics for Project-Level Scattering and Tangling},
booktitle = {Proceedings of the 22nd International Conference on Software Engineering
{\&} Knowledge Engineering (SEKE'2010), Redwood City, San Francisco
Bay, CA, USA, July 1 - July 3, 2010},
pages = {141--146},
publisher = {Knowledge Systems Institute Graduate School},
year = {2010},
timestamp = {Thu, 12 Mar 2020 11:30:50 +0100},
biburl = {https://dblp.org/rec/conf/seke/LinsteadHLB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wirn/BaldiAS10,
author = {Pierre Baldi and
Chlo{\'{e}}{-}Agathe Azencott and
Sanjay Joshua Swamidass},
editor = {Bruno Apolloni and
Simone Bassis and
Anna Esposito and
Francesco Carlo Morabito},
title = {Bridging the Gap Between Neural Network and Kernel Methods: Applications
to Drug Discovery},
booktitle = {Neural Nets {WIRN10} - Proceedings of the 20th Italian Workshop on
Neural Nets, Vietri sul Mare, Salerno, Italy, May 27-29 2010},
series = {Frontiers in Artificial Intelligence and Applications},
volume = {226},
pages = {3--13},
publisher = {{IOS} Press},
year = {2010},
url = {https://doi.org/10.3233/978-1-60750-692-8-3},
doi = {10.3233/978-1-60750-692-8-3},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wirn/BaldiAS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/adhoc/JurdakBL09,
author = {Raja Jurdak and
Pierre Baldi and
Cristina Videira Lopes},
title = {Software-driven sensor networks for short-range shallow water applications},
journal = {Ad Hoc Networks},
volume = {7},
number = {5},
pages = {837--848},
year = {2009},
url = {https://doi.org/10.1016/j.adhoc.2008.07.012},
doi = {10.1016/J.ADHOC.2008.07.012},
timestamp = {Mon, 16 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/adhoc/JurdakBL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XieRB09,
author = {Xiaohui Xie and
Paul Rigor and
Pierre Baldi},
title = {MotifMap: a human genome-wide map of candidate regulatory motif sites},
journal = {Bioinform.},
volume = {25},
number = {2},
pages = {167--174},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn605},
doi = {10.1093/BIOINFORMATICS/BTN605},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/XieRB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BrandonWB09,
author = {Marty C. Brandon and
Douglas C. Wallace and
Pierre Baldi},
title = {Data structures and compression algorithms for genomic sequence data},
journal = {Bioinform.},
volume = {25},
number = {14},
pages = {1731--1738},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp319},
doi = {10.1093/BIOINFORMATICS/BTP319},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BrandonWB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MagnanRB09,
author = {Christophe N. Magnan and
Arlo Z. Randall and
Pierre Baldi},
title = {SOLpro: accurate sequence-based prediction of protein solubility},
journal = {Bioinform.},
volume = {25},
number = {17},
pages = {2200--2207},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp386},
doi = {10.1093/BIOINFORMATICS/BTP386},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MagnanRB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/datamine/LinsteadBNRLB09,
author = {Erik Linstead and
Sushil Krishna Bajracharya and
Trung Chi Ngo and
Paul Rigor and
Cristina Videira Lopes and
Pierre Baldi},
title = {Sourcerer: mining and searching internet-scale software repositories},
journal = {Data Min. Knowl. Discov.},
volume = {18},
number = {2},
pages = {300--336},
year = {2009},
url = {https://doi.org/10.1007/s10618-008-0118-x},
doi = {10.1007/S10618-008-0118-X},
timestamp = {Sun, 22 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/datamine/LinsteadBNRLB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcheminf/NasrSB09,
author = {Ramzi Nasr and
Sanjay Joshua Swamidass and
Pierre Baldi},
title = {Large scale study of multiple-molecule queries},
journal = {J. Cheminformatics},
volume = {1},
pages = {7},
year = {2009},
url = {https://doi.org/10.1186/1758-2946-1-7},
doi = {10.1186/1758-2946-1-7},
timestamp = {Thu, 14 Feb 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcheminf/NasrSB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/SwamidassALGTB09,
author = {S. Joshua Swamidass and
Chlo{\'{e}}{-}Agathe Azencott and
Ting{-}Wan Lin and
Hugo Gramajo and
Shiou{-}Chuan Tsai and
Pierre Baldi},
title = {Influence Relevance Voting: An Accurate And Interpretable Virtual
High Throughput Screening Method},
journal = {J. Chem. Inf. Model.},
volume = {49},
number = {4},
pages = {756--766},
year = {2009},
url = {https://doi.org/10.1021/ci8004379},
doi = {10.1021/CI8004379},
timestamp = {Fri, 06 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcisd/SwamidassALGTB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/BaldiH09,
author = {Pierre Baldi and
Daniel S. Hirschberg},
title = {An Intersection Inequality Sharper than the Tanimoto Triangle Inequality
for Efficiently Searching Large Databases},
journal = {J. Chem. Inf. Model.},
volume = {49},
number = {8},
pages = {1866--1870},
year = {2009},
url = {https://doi.org/10.1021/ci900133j},
doi = {10.1021/CI900133J},
timestamp = {Fri, 06 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcisd/BaldiH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/ChenB09,
author = {Jonathan H. Chen and
Pierre Baldi},
title = {No Electron Left Behind: {A} Rule-Based Expert System To Predict Chemical
Reactions and Reaction Mechanisms},
journal = {J. Chem. Inf. Model.},
volume = {49},
number = {9},
pages = {2034--2043},
year = {2009},
url = {https://doi.org/10.1021/ci900157k},
doi = {10.1021/CI900157K},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcisd/ChenB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/colcom/JavanmardiGLB09,
author = {Sara Javanmardi and
Yasser Ganjisaffar and
Cristina Videira Lopes and
Pierre Baldi},
editor = {James B. D. Joshi and
Tao Zhang},
title = {User contribution and trust in Wikipedia},
booktitle = {The 5th International Conference on Collaborative Computing: Networking,
Applications and Worksharing, CollaborateCom 2009, Washington DC,
USA, November 11-14, 2009},
pages = {1--6},
publisher = {{ICST} / {IEEE}},
year = {2009},
url = {https://doi.org/10.4108/ICST.COLLABORATECOM2009.8376},
doi = {10.4108/ICST.COLLABORATECOM2009.8376},
timestamp = {Sun, 08 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/colcom/JavanmardiGLB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iwpc/LinsteadHLB09,
author = {Erik Linstead and
Lindsey Hughes and
Cristina Videira Lopes and
Pierre Baldi},
title = {Capturing Java naming conventions with first-order Markov models},
booktitle = {The 17th {IEEE} International Conference on Program Comprehension,
{ICPC} 2009, Vancouver, British Columbia, Canada, May 17-19, 2009},
pages = {313--314},
publisher = {{IEEE} Computer Society},
year = {2009},
url = {https://doi.org/10.1109/ICPC.2009.5090074},
doi = {10.1109/ICPC.2009.5090074},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iwpc/LinsteadHLB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/msr/LinsteadB09,
author = {Erik Linstead and
Pierre Baldi},
editor = {Michael W. Godfrey and
Jim Whitehead},
title = {Mining the coherence of {GNOME} bug reports with statistical topic
models},
booktitle = {Proceedings of the 6th International Working Conference on Mining
Software Repositories, {MSR} 2009 (Co-located with ICSE), Vancouver,
BC, Canada, May 16-17, 2009, Proceedings},
pages = {99--102},
publisher = {{IEEE} Computer Society},
year = {2009},
url = {https://doi.org/10.1109/MSR.2009.5069486},
doi = {10.1109/MSR.2009.5069486},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/msr/LinsteadB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/msr/OssherBLBL09,
author = {Joel Ossher and
Sushil Krishna Bajracharya and
Erik Linstead and
Pierre Baldi and
Cristina Videira Lopes},
editor = {Michael W. Godfrey and
Jim Whitehead},
title = {SourcererDB: An aggregated repository of statically analyzed and cross-linked
open source Java projects},
booktitle = {Proceedings of the 6th International Working Conference on Mining
Software Repositories, {MSR} 2009 (Co-located with ICSE), Vancouver,
BC, Canada, May 16-17, 2009, Proceedings},
pages = {183--186},
publisher = {{IEEE} Computer Society},
year = {2009},
url = {https://doi.org/10.1109/MSR.2009.5069501},
doi = {10.1109/MSR.2009.5069501},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/msr/OssherBLBL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RandallCSB08,
author = {Arlo Z. Randall and
Jianlin Cheng and
Michael J. Sweredoski and
Pierre Baldi},
title = {TMBpro: secondary structure, beta-contact and tertiary structure prediction
of transmembrane beta-barrel proteins},
journal = {Bioinform.},
volume = {24},
number = {4},
pages = {513--520},
year = {2008},
url = {https://doi.org/10.1093/bioinformatics/btm548},
doi = {10.1093/BIOINFORMATICS/BTM548},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RandallCSB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SweredoskiB08,
author = {Michael J. Sweredoski and
Pierre Baldi},
title = {{PEPITO:} improved discontinuous B-cell epitope prediction using multiple
distance thresholds and half sphere exposure},
journal = {Bioinform.},
volume = {24},
number = {12},
pages = {1459--1460},
year = {2008},
url = {https://doi.org/10.1093/bioinformatics/btn199},
doi = {10.1093/BIOINFORMATICS/BTN199},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SweredoskiB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/BenzSB08,
author = {Ryan W. Benz and
S. Joshua Swamidass and
Pierre Baldi},
title = {Discovery of Power-Laws in Chemical Space},
journal = {J. Chem. Inf. Model.},
volume = {48},
number = {6},
pages = {1138--1151},
year = {2008},
url = {https://doi.org/10.1021/ci700353m},
doi = {10.1021/CI700353M},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcisd/BenzSB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/BaldiHN08,
author = {Pierre Baldi and
Daniel S. Hirschberg and
Ramzi Nasr},
title = {Speeding Up Chemical Database Searches Using a Proximity Filter Based
on the Logical Exclusive {OR}},
journal = {J. Chem. Inf. Model.},
volume = {48},
number = {7},
pages = {1367--1378},
year = {2008},
url = {https://doi.org/10.1021/ci800076s},
doi = {10.1021/CI800076S},
timestamp = {Fri, 06 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcisd/BaldiHN08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nn/WuB08,
author = {Lin Wu and
Pierre Baldi},
title = {Learning to play Go using recursive neural networks},
journal = {Neural Networks},
volume = {21},
number = {9},
pages = {1392--1400},
year = {2008},
url = {https://doi.org/10.1016/j.neunet.2008.02.002},
doi = {10.1016/J.NEUNET.2008.02.002},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nn/WuB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dcc/HirschbergB08,
author = {Daniel S. Hirschberg and
Pierre Baldi},
title = {Effective Compression of Monotone and Quasi-Monotone Sequences of
Integers},
booktitle = {2008 Data Compression Conference {(DCC} 2008), 25-27 March 2008, Snowbird,
UT, {USA}},
pages = {520},
publisher = {{IEEE} Computer Society},
year = {2008},
url = {https://doi.org/10.1109/DCC.2008.9},
doi = {10.1109/DCC.2008.9},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/dcc/HirschbergB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icmla/LinsteadLB08,
author = {Erik Linstead and
Cristina Videira Lopes and
Pierre Baldi},
editor = {M. Arif Wani and
Xue{-}wen Chen and
David P. Casasent and
Lukasz A. Kurgan and
Tony Hu and
Khalid Hafeez},
title = {An Application of Latent Dirichlet Allocation to Analyzing Software
Evolution},
booktitle = {Seventh International Conference on Machine Learning and Applications,
{ICMLA} 2008, San Diego, California, USA, 11-13 December 2008},
pages = {813--818},
publisher = {{IEEE} Computer Society},
year = {2008},
url = {https://doi.org/10.1109/ICMLA.2008.47},
doi = {10.1109/ICMLA.2008.47},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icmla/LinsteadLB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/BaldiB08,
author = {Pierre Baldi and
Ryan W. Benz},
title = {BLASTing small molecules - statistics and extreme statistics of chemical
similarity scores},
booktitle = {Proceedings 16th International Conference on Intelligent Systems for
Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
pages = {357--365},
year = {2008},
url = {https://doi.org/10.1093/bioinformatics/btn187},
doi = {10.1093/BIOINFORMATICS/BTN187},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ismb/BaldiB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/oopsla/BaldiLLB08,
author = {Pierre Baldi and
Cristina Videira Lopes and
Erik Linstead and
Sushil Krishna Bajracharya},
editor = {Gail E. Harris},
title = {A theory of aspects as latent topics},
booktitle = {Proceedings of the 23rd Annual {ACM} {SIGPLAN} Conference on Object-Oriented
Programming, Systems, Languages, and Applications, {OOPSLA} 2008,
October 19-23, 2008, Nashville, TN, {USA}},
pages = {543--562},
publisher = {{ACM}},
year = {2008},
url = {https://doi.org/10.1145/1449764.1449807},
doi = {10.1145/1449764.1449807},
timestamp = {Fri, 25 Jun 2021 14:48:54 +0200},
biburl = {https://dblp.org/rec/conf/oopsla/BaldiLLB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenLSWB07,
author = {Jonathan H. Chen and
Erik Linstead and
Sanjay Joshua Swamidass and
Dennis Wang and
Pierre Baldi},
title = {ChemDB update - full-text search and virtual chemical space},
journal = {Bioinform.},
volume = {23},
number = {17},
pages = {2348--2351},
year = {2007},
url = {https://doi.org/10.1093/bioinformatics/btm341},
doi = {10.1093/BIOINFORMATICS/BTM341},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenLSWB07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SweredoskiDNSB07,
author = {Michael J. Sweredoski and
Kevin J. Donovan and
Bao D. Nguyen and
A. J. Shaka and
Pierre Baldi},
title = {Minimizing the overlap problem in protein {NMR:} a computational framework
for precision amino acid labeling},
journal = {Bioinform.},
volume = {23},
number = {21},
pages = {2829--2835},
year = {2007},
url = {https://doi.org/10.1093/bioinformatics/btm406},
doi = {10.1093/BIOINFORMATICS/BTM406},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SweredoskiDNSB07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChengB07,
author = {Jianlin Cheng and
Pierre Baldi},
title = {Improved residue contact prediction using support vector machines
and a large feature set},
journal = {{BMC} Bioinform.},
volume = {8},
year = {2007},
url = {https://doi.org/10.1186/1471-2105-8-113},
doi = {10.1186/1471-2105-8-113},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ChengB07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/SwamidassB07,
author = {S. Joshua Swamidass and
Pierre Baldi},
title = {Bounds and Algorithms for Fast Exact Searches of Chemical Fingerprints
in Linear and Sublinear Time},
journal = {J. Chem. Inf. Model.},
volume = {47},
number = {2},
pages = {302--317},
year = {2007},
url = {https://doi.org/10.1021/ci600358f},
doi = {10.1021/CI600358F},
timestamp = {Fri, 06 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcisd/SwamidassB07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/SwamidassB07a,
author = {S. Joshua Swamidass and
Pierre Baldi},
title = {Mathematical Correction for Fingerprint Similarity Measures to Improve
Chemical Retrieval},
journal = {J. Chem. Inf. Model.},
volume = {47},
number = {3},
pages = {952--964},
year = {2007},
url = {https://doi.org/10.1021/ci600526a},
doi = {10.1021/CI600526A},
timestamp = {Fri, 06 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcisd/SwamidassB07a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/AzencottKSCRB07,
author = {Chlo{\'{e}}{-}Agathe Azencott and
Alexandre Ksikes and
S. Joshua Swamidass and
Jonathan H. Chen and
Liva Ralaivola and
Pierre Baldi},
title = {One- to Four-Dimensional Kernels for Virtual Screening and the Prediction
of Physical, Chemical, and Biological Properties},
journal = {J. Chem. Inf. Model.},
volume = {47},
number = {3},
pages = {965--974},
year = {2007},
url = {https://doi.org/10.1021/ci600397p},
doi = {10.1021/CI600397P},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcisd/AzencottKSCRB07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/BaldiBHS07,
author = {Pierre Baldi and
Ryan W. Benz and
Daniel S. Hirschberg and
S. Joshua Swamidass},
title = {Lossless Compression of Chemical Fingerprints Using Integer Entropy
Codes Improves Storage and Retrieval},
journal = {J. Chem. Inf. Model.},
volume = {47},
number = {6},
pages = {2098--2109},
year = {2007},
url = {https://doi.org/10.1021/ci700200n},
doi = {10.1021/CI700200N},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcisd/BaldiBHS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Ruiz-PesiniLPPBMYKBW07,
author = {Eduardo Ruiz{-}Pesini and
Marie T. Lott and
Vincent Procaccio and
Jason C. Poole and
Marty C. Brandon and
Dan Mishmar and
Christina Yi and
James Kreuziger and
Pierre Baldi and
Douglas C. Wallace},
title = {An enhanced {MITOMAP} with a global mtDNA mutational phylogeny},
journal = {Nucleic Acids Res.},
volume = {35},
number = {Database-Issue},
pages = {823--828},
year = {2007},
url = {https://doi.org/10.1093/nar/gkl927},
doi = {10.1093/NAR/GKL927},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/Ruiz-PesiniLPPBMYKBW07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmc/JurdakBL07,
author = {Raja Jurdak and
Pierre Baldi and
Cristina Videira Lopes},
title = {Adaptive Low Power Listening for Wireless Sensor Networks},
journal = {{IEEE} Trans. Mob. Comput.},
volume = {6},
number = {8},
pages = {988--1004},
year = {2007},
url = {https://doi.org/10.1109/TMC.2007.1037},
doi = {10.1109/TMC.2007.1037},
timestamp = {Mon, 16 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tmc/JurdakBL07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icmla/Baldi07,
author = {Pierre Baldi},
editor = {M. Arif Wani and
Mehmed M. Kantardzic and
Tao Li and
Ying Liu and
Lukasz A. Kurgan and
Jieping Ye and
Mitsunori Ogihara and
Seref Sagiroglu and
Xue{-}wen Chen and
Leif E. Peterson and
Khalid Hafeez},
title = {Machine Learning Challenges in Chemoinformatics and Drug Screening
and Design},
booktitle = {The Sixth International Conference on Machine Learning and Applications,
{ICMLA} 2007, Cincinnati, Ohio, USA, 13-15 December 2007},
publisher = {{IEEE} Computer Society},
year = {2007},
url = {https://doi.org/10.1109/ICMLA.2007.125},
doi = {10.1109/ICMLA.2007.125},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icmla/Baldi07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/SundareshRUPBHDTDFB07,
author = {Suman Sundaresh and
Arlo Z. Randall and
Berkay Unal and
Jeannine M. Petersen and
John T. Belisle and
M. Gill Hartley and
Melanie Duffield and
Richard W. Titball and
D. Huw Davies and
Philip L. Felgner and
Pierre Baldi},
title = {From protein microarrays to diagnostic antigen discovery: a study
of the pathogen \emph{Francisella tularensis}},
booktitle = {Proceedings 15th International Conference on Intelligent Systems for
Molecular Biology {(ISMB)} {\&} 6th European Conference on Computational
Biology (ECCB), Vienna, Austria, July 21-25, 2007},
pages = {508--518},
year = {2007},
url = {https://doi.org/10.1093/bioinformatics/btm207},
doi = {10.1093/BIOINFORMATICS/BTM207},
timestamp = {Sat, 07 Sep 2019 11:59:25 +0200},
biburl = {https://dblp.org/rec/conf/ismb/SundareshRUPBHDTDFB07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/kbse/LinsteadRBLB07,
author = {Erik Linstead and
Paul Rigor and
Sushil Krishna Bajracharya and
Cristina Videira Lopes and
Pierre Baldi},
editor = {R. E. Kurt Stirewalt and
Alexander Egyed and
Bernd Fischer},
title = {Mining concepts from code with probabilistic topic models},
booktitle = {22nd {IEEE/ACM} International Conference on Automated Software Engineering
{(ASE} 2007), November 5-9, 2007, Atlanta, Georgia, {USA}},
pages = {461--464},
publisher = {{ACM}},
year = {2007},
url = {https://doi.org/10.1145/1321631.1321709},
doi = {10.1145/1321631.1321709},
timestamp = {Tue, 06 Nov 2018 16:58:23 +0100},
biburl = {https://dblp.org/rec/conf/kbse/LinsteadRBLB07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/kbse/LemosBOMMBL07,
author = {Ot{\'{a}}vio Augusto Lazzarini Lemos and
Sushil Krishna Bajracharya and
Joel Ossher and
Ricardo Santos Morla and
Paulo C{\'{e}}sar Masiero and
Pierre Baldi and
Cristina Videira Lopes},
editor = {R. E. Kurt Stirewalt and
Alexander Egyed and
Bernd Fischer},
title = {CodeGenie: using test-cases to search and reuse source code},
booktitle = {22nd {IEEE/ACM} International Conference on Automated Software Engineering
{(ASE} 2007), November 5-9, 2007, Atlanta, Georgia, {USA}},
pages = {525--526},
publisher = {{ACM}},
year = {2007},
url = {https://doi.org/10.1145/1321631.1321726},
doi = {10.1145/1321631.1321726},
timestamp = {Thu, 18 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/kbse/LemosBOMMBL07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mlg/Baldi07,
author = {Pierre Baldi},
editor = {Paolo Frasconi and
Kristian Kersting and
Koji Tsuda},
title = {Learning and Charting Chemical Space with Strings and Graphs: Challenges
and Opportunities for {AI} and Machine Learning},
booktitle = {Mining and Learning with Graphs, {MLG} 2007, Firence, Italy, August
1-3, 2007, Proceedings},
year = {2007},
url = {http://mlg07.dsi.unifi.it/invited.html\#baldi},
timestamp = {Wed, 12 Dec 2007 07:17:30 +0100},
biburl = {https://dblp.org/rec/conf/mlg/Baldi07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/msr/LinsteadRBLB07,
author = {Erik Linstead and
Paul Rigor and
Sushil Krishna Bajracharya and
Cristina Videira Lopes and
Pierre Baldi},
title = {Mining Eclipse Developer Contributions via Author-Topic Models},
booktitle = {Fourth International Workshop on Mining Software Repositories, {MSR}
2007 {(ICSE} Workshop), Minneapolis, MN, USA, May 19-20, 2007, Proceedings},
pages = {30},
publisher = {{IEEE} Computer Society},
year = {2007},
url = {https://doi.org/10.1109/MSR.2007.20},
doi = {10.1109/MSR.2007.20},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/msr/LinsteadRBLB07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/LinsteadRBLB07,
author = {Erik Linstead and
Paul Rigor and
Sushil Krishna Bajracharya and
Cristina Videira Lopes and
Pierre Baldi},
editor = {John C. Platt and
Daphne Koller and
Yoram Singer and
Sam T. Roweis},
title = {Mining Internet-Scale Software Repositories},
booktitle = {Advances in Neural Information Processing Systems 20, Proceedings
of the Twenty-First Annual Conference on Neural Information Processing
Systems, Vancouver, British Columbia, Canada, December 3-6, 2007},
pages = {929--936},
publisher = {Curran Associates, Inc.},
year = {2007},
url = {https://proceedings.neurips.cc/paper/2007/hash/a532400ed62e772b9dc0b86f46e583ff-Abstract.html},
timestamp = {Mon, 16 May 2022 15:41:51 +0200},
biburl = {https://dblp.org/rec/conf/nips/LinsteadRBLB07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChengB06,
author = {Jianlin Cheng and
Pierre Baldi},
title = {A machine learning information retrieval approach to protein fold
recognition},
journal = {Bioinform.},
volume = {22},
number = {12},
pages = {1456--1463},
year = {2006},
url = {https://doi.org/10.1093/bioinformatics/btl102},
doi = {10.1093/BIOINFORMATICS/BTL102},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChengB06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SundareshDHMUDFB06,
author = {Suman Sundaresh and
Denise L. Doolan and
Siddiqua Hirst and
Yunxiang Mu and
Berkay Unal and
D. Huw Davies and
Philip L. Felgner and
Pierre Baldi},
title = {Identification of humoral immune responses in protein microarrays
using {DNA} microarray data analysis techniques},
journal = {Bioinform.},
volume = {22},
number = {14},
pages = {1760--1766},
year = {2006},
url = {https://doi.org/10.1093/bioinformatics/btl162},
doi = {10.1093/BIOINFORMATICS/BTL162},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SundareshDHMUDFB06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/datamine/ChengSB06,
author = {Jianlin Cheng and
Michael J. Sweredoski and
Pierre Baldi},
title = {DOMpro: Protein Domain Prediction Using Profiles, Secondary Structure,
Relative Solvent Accessibility, and Recursive Neural Networks},
journal = {Data Min. Knowl. Discov.},
volume = {13},
number = {1},
pages = {1--10},
year = {2006},
url = {https://doi.org/10.1007/s10618-005-0023-5},
doi = {10.1007/S10618-005-0023-5},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/datamine/ChengSB06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/PollastriVFB06,
author = {Gianluca Pollastri and
Alessandro Vullo and
Paolo Frasconi and
Pierre Baldi},
title = {Modular {DAG-RNN} Architectures for Assembling Coarse Protein Structures},
journal = {J. Comput. Biol.},
volume = {13},
number = {3},
pages = {631--650},
year = {2006},
url = {https://doi.org/10.1089/cmb.2006.13.631},
doi = {10.1089/CMB.2006.13.631},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/PollastriVFB06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/pnas/WangKBM06,
author = {Eric T. Wang and
Greg Kodama and
Pierre Baldi and
Robert K. Moyzis},
title = {Global landscape of recent inferred Darwinian selection for \emph{Homo
sapiens}},
journal = {Proc. Natl. Acad. Sci. {USA}},
volume = {103},
number = {1},
pages = {135--140},
year = {2006},
url = {https://doi.org/10.1073/pnas.0509691102},
doi = {10.1073/PNAS.0509691102},
timestamp = {Thu, 16 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/pnas/WangKBM06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/sigmobile/LopesHMGB06,
author = {Cristina Videira Lopes and
Amir Haghighat and
Atri Mandal and
Tony Givargis and
Pierre Baldi},
title = {Localization of off-the-shelf mobile devices using audible sound:
architectures, protocols and performance assessment},
journal = {{ACM} {SIGMOBILE} Mob. Comput. Commun. Rev.},
volume = {10},
number = {2},
pages = {38--50},
year = {2006},
url = {https://doi.org/10.1145/1137975.1137980},
doi = {10.1145/1137975.1137980},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/sigmobile/LopesHMGB06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/DanzigerSZDLCCHSLBBL06,
author = {Samuel A. Danziger and
Sanjay Joshua Swamidass and
Jue Zeng and
Lawrence R. Dearth and
Qiang Lu and
Jonathan H. Chen and
Jianlin Cheng and
Vinh P. Hoang and
Hiroto Saigo and
Ray Luo and
Pierre Baldi and
Rainer K. Brachmann and
Richard H. Lathrop},
title = {Functional Census of Mutation Sequence Spaces: The Example of p53
Cancer Rescue Mutants},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {3},
number = {2},
pages = {114--125},
year = {2006},
url = {https://doi.org/10.1109/TCBB.2006.22},
doi = {10.1109/TCBB.2006.22},
timestamp = {Mon, 24 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/DanzigerSZDLCCHSLBBL06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/WuB06,
author = {Lin Wu and
Pierre Baldi},
editor = {Bernhard Sch{\"{o}}lkopf and
John C. Platt and
Thomas Hofmann},
title = {A Scalable Machine Learning Approach to Go},
booktitle = {Advances in Neural Information Processing Systems 19, Proceedings
of the Twentieth Annual Conference on Neural Information Processing
Systems, Vancouver, British Columbia, Canada, December 4-7, 2006},
pages = {1521--1528},
publisher = {{MIT} Press},
year = {2006},
url = {https://proceedings.neurips.cc/paper/2006/hash/512fc3c5227f637e41437c999a2d3169-Abstract.html},
timestamp = {Mon, 16 May 2022 15:41:51 +0200},
biburl = {https://dblp.org/rec/conf/nips/WuB06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/oopsla/BajracharyaNLDRBL06,
author = {Sushil Krishna Bajracharya and
Trung Chi Ngo and
Erik Linstead and
Yimeng Dou and
Paul Rigor and
Pierre Baldi and
Cristina Videira Lopes},
editor = {Peri L. Tarr and
William R. Cook},
title = {Sourcerer: a search engine for open source code supporting structure-based
search},
booktitle = {Companion to the 21th Annual {ACM} {SIGPLAN} Conference on Object-Oriented
Programming, Systems, Languages, and Applications, {OOPSLA} 2006,
October 22-26, 2006, Portland, Oregon, {USA}},
pages = {681--682},
publisher = {{ACM}},
year = {2006},
url = {https://doi.org/10.1145/1176617.1176671},
doi = {10.1145/1176617.1176671},
timestamp = {Sat, 31 Jul 2021 17:22:24 +0200},
biburl = {https://dblp.org/rec/conf/oopsla/BajracharyaNLDRBL06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HampsonGB05,
author = {Steven E. Hampson and
Brandon S. Gaut and
Pierre Baldi},
title = {Statistical detection of chromosomal homology using shared-gene density
alone},
journal = {Bioinform.},
volume = {21},
number = {8},
pages = {1339--1348},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti168},
doi = {10.1093/BIOINFORMATICS/BTI168},
timestamp = {Thu, 14 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HampsonGB05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenSDBB05,
author = {Jonathan H. Chen and
Sanjay Joshua Swamidass and
Yimeng Dou and
Jocelyne Bruand and
Pierre Baldi},
title = {ChemDB: a public database of small molecules and related chemoinformatics
resources},
journal = {Bioinform.},
volume = {21},
number = {22},
pages = {4133--4139},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti683},
doi = {10.1093/BIOINFORMATICS/BTI683},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenSDBB05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/datamine/ChengSB05,
author = {Jianlin Cheng and
Michael J. Sweredoski and
Pierre Baldi},
title = {Accurate Prediction of Protein Disordered Regions by Mining Protein
Structure Data},
journal = {Data Min. Knowl. Discov.},
volume = {11},
number = {3},
pages = {213--222},
year = {2005},
url = {https://doi.org/10.1007/s10618-005-0001-y},
doi = {10.1007/S10618-005-0001-Y},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/datamine/ChengSB05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/expert/ChengSBM05,
author = {Jianlin Cheng and
Lucas Scharenbroich and
Pierre Baldi and
Eric Mjolsness},
title = {Sigmoid: {A} Software Infrastructure for Pathway Bioinformatics and
Systems Biology},
journal = {{IEEE} Intell. Syst.},
volume = {20},
number = {3},
pages = {68--75},
year = {2005},
url = {https://doi.org/10.1109/MIS.2005.51},
doi = {10.1109/MIS.2005.51},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/expert/ChengSBM05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijbra/SundareshHHB05,
author = {Suman Sundaresh and
She{-}pin Hung and
G. Wesley Hatfield and
Pierre Baldi},
title = {How noisy and replicable are {DNA} microarray data?},
journal = {Int. J. Bioinform. Res. Appl.},
volume = {1},
number = {1},
pages = {31--50},
year = {2005},
url = {https://doi.org/10.1504/IJBRA.2005.006901},
doi = {10.1504/IJBRA.2005.006901},
timestamp = {Fri, 11 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijbra/SundareshHHB05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BrandonLNSNBW05,
author = {Marty C. Brandon and
Marie T. Lott and
Kevin Cuong Nguyen and
Syawal Spolim and
Shamkant B. Navathe and
Pierre Baldi and
Douglas C. Wallace},
title = {{MITOMAP:} a human mitochondrial genome database - 2004 update},
journal = {Nucleic Acids Res.},
volume = {33},
number = {Database-Issue},
pages = {611--613},
year = {2005},
url = {https://doi.org/10.1093/nar/gki079},
doi = {10.1093/NAR/GKI079},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/BrandonLNSNBW05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ChengRSB05,
author = {Jianlin Cheng and
Arlo Z. Randall and
Michael J. Sweredoski and
Pierre Baldi},
title = {{SCRATCH:} a protein structure and structural feature prediction server},
journal = {Nucleic Acids Res.},
volume = {33},
number = {Web-Server-Issue},
pages = {72--76},
year = {2005},
url = {https://doi.org/10.1093/nar/gki396},
doi = {10.1093/NAR/GKI396},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ChengRSB05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nn/BaldiR05,
author = {Pierre Baldi and
Michal Rosen{-}Zvi},
title = {On the relationship between deterministic and probabilistic directed
Graphical models: From Bayesian networks to recursive neural networks},
journal = {Neural Networks},
volume = {18},
number = {8},
pages = {1080--1086},
year = {2005},
url = {https://doi.org/10.1016/j.neunet.2005.07.007},
doi = {10.1016/J.NEUNET.2005.07.007},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nn/BaldiR05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nn/RalaivolaSSB05,
author = {Liva Ralaivola and
Sanjay Joshua Swamidass and
Hiroto Saigo and
Pierre Baldi},
title = {Graph kernels for chemical informatics},
journal = {Neural Networks},
volume = {18},
number = {8},
pages = {1093--1110},
year = {2005},
url = {https://doi.org/10.1016/j.neunet.2005.07.009},
doi = {10.1016/J.NEUNET.2005.07.009},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nn/RalaivolaSSB05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/wicomm/JurdakBL05,
author = {Raja Jurdak and
Pierre Baldi and
Cristina Videira Lopes},
title = {{U-MAC:} a proactive and adaptive {UWB} medium access control protocol},
journal = {Wirel. Commun. Mob. Comput.},
volume = {5},
number = {5},
pages = {551--566},
year = {2005},
url = {https://doi.org/10.1002/wcm.312},
doi = {10.1002/WCM.312},
timestamp = {Thu, 06 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/wicomm/JurdakBL05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ccnc/MandalLGHJB05,
author = {Atri Mandal and
Cristina V. Lopes and
Tony Givargis and
Amir Haghighat and
Raja Jurdak and
Pierre Baldi},
title = {Beep: 3D indoor positioning using audible sound},
booktitle = {2nd {IEEE} Consumer Communications and Networking Conference, {CCNC}
2005, Las Vegas, NV, USA, January 3-6, 2005},
pages = {348--353},
publisher = {{IEEE}},
year = {2005},
url = {https://doi.org/10.1109/CCNC.2005.1405195},
doi = {10.1109/CCNC.2005.1405195},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ccnc/MandalLGHJB05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cvpr/IttiB05,
author = {Laurent Itti and
Pierre Baldi},
title = {A Principled Approach to Detecting Surprising Events in Video},
booktitle = {2005 {IEEE} Computer Society Conference on Computer Vision and Pattern
Recognition {(CVPR} 2005), 20-26 June 2005, San Diego, CA, {USA}},
pages = {631--637},
publisher = {{IEEE} Computer Society},
year = {2005},
url = {https://doi.org/10.1109/CVPR.2005.40},
doi = {10.1109/CVPR.2005.40},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cvpr/IttiB05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/esann/RalaivolaWB05,
author = {Liva Ralaivola and
Lin Wu and
Pierre Baldi},
title = {{SVM} and pattern-enriched common fate graphs for the game of go},
booktitle = {13th European Symposium on Artificial Neural Networks, {ESANN} 2005,
Bruges, Belgium, April 27-29, 2005, Proceedings},
pages = {485--490},
year = {2005},
url = {https://www.esann.org/sites/default/files/proceedings/legacy/es2005-126.pdf},
timestamp = {Tue, 02 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/esann/RalaivolaWB05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icw/JurdakBL05,
author = {Raja Jurdak and
Pierre Baldi and
Cristina Videira Lopes},
title = {State-Driven Energy Optimization in Wireless Sensor Networks},
booktitle = {Systems Communications 2005 {(ICW} / {ICHSN} / {ICMCS} / {SENET} 2005),
14-17 August 2005, Montreal, Canada},
pages = {356--363},
publisher = {{IEEE} Computer Society},
year = {2005},
url = {https://doi.org/10.1109/ICW.2005.76},
doi = {10.1109/ICW.2005.76},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icw/JurdakBL05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/ChengB05,
author = {Jianlin Cheng and
Pierre Baldi},
title = {Three-stage prediction of protein ?-sheets by neural networks, alignments
and graph algorithms},
booktitle = {Proceedings Thirteenth International Conference on Intelligent Systems
for Molecular Biology 2005, Detroit, MI, USA, 25-29 June 2005},
pages = {75--84},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti1004},
doi = {10.1093/BIOINFORMATICS/BTI1004},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ismb/ChengB05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/SwamidassCBPRB05,
author = {Sanjay Joshua Swamidass and
Jonathan H. Chen and
Jocelyne Bruand and
Peter Phung and
Liva Ralaivola and
Pierre Baldi},
title = {Kernels for small molecules and the prediction of mutagenicity, toxicity
and anti-cancer activity},
booktitle = {Proceedings Thirteenth International Conference on Intelligent Systems
for Molecular Biology 2005, Detroit, MI, USA, 25-29 June 2005},
pages = {359--368},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti1055},
doi = {10.1093/BIOINFORMATICS/BTI1055},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ismb/SwamidassCBPRB05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/IttiB05,
author = {Laurent Itti and
Pierre Baldi},
title = {Bayesian Surprise Attracts Human Attention},
booktitle = {Advances in Neural Information Processing Systems 18 [Neural Information
Processing Systems, {NIPS} 2005, December 5-8, 2005, Vancouver, British
Columbia, Canada]},
pages = {547--554},
year = {2005},
url = {https://proceedings.neurips.cc/paper/2005/hash/0172d289da48c48de8c5ebf3de9f7ee1-Abstract.html},
timestamp = {Mon, 16 May 2022 15:41:51 +0200},
biburl = {https://dblp.org/rec/conf/nips/IttiB05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wilf/SwamidassB05,
author = {Sanjay Joshua Swamidass and
Pierre Baldi},
editor = {Isabelle Bloch and
Alfredo Petrosino and
Andrea Tettamanzi},
title = {Statistical Distribution of Chemical Fingerprints},
booktitle = {Fuzzy Logic and Applications, 6th International Workshop, {WILF} 2005,
Crema, Italy, September 15-17, 2005, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {3849},
pages = {11--18},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11676935\_2},
doi = {10.1007/11676935\_2},
timestamp = {Sun, 02 Jun 2019 21:16:27 +0200},
biburl = {https://dblp.org/rec/conf/wilf/SwamidassB05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/artmed/RandallBV04,
author = {Arlo Z. Randall and
Pierre Baldi and
Luis P. Villarreal},
title = {Structural proteomics of the poxvirus family},
journal = {Artif. Intell. Medicine},
volume = {31},
number = {2},
pages = {105--115},
year = {2004},
url = {https://doi.org/10.1016/j.artmed.2004.01.006},
doi = {10.1016/J.ARTMED.2004.01.006},
timestamp = {Thu, 20 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/artmed/RandallBV04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DouBPPNB04,
author = {Yimeng Dou and
Pierre{-}Fran{\c{c}}ois Baisn{\'{e}}e and
Gianluca Pollastri and
Yann P{\'{e}}cout and
James Nowick and
Pierre Baldi},
title = {{ICBS:} a database of interactions between protein chains mediated
by ?-sheet formation},
journal = {Bioinform.},
volume = {20},
number = {16},
pages = {2767--2777},
year = {2004},
url = {https://doi.org/10.1093/bioinformatics/bth326},
doi = {10.1093/BIOINFORMATICS/BTH326},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DouBPPNB04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/comsur/JurdakLB04,
author = {Raja Jurdak and
Cristina Videira Lopes and
Pierre Baldi},
title = {A survey, classification and comparative analysis of medium access
control protocols for ad hoc networks},
journal = {{IEEE} Commun. Surv. Tutorials},
volume = {6},
number = {1-4},
pages = {2--16},
year = {2004},
url = {https://doi.org/10.1109/COMST.2004.5342231},
doi = {10.1109/COMST.2004.5342231},
timestamp = {Thu, 09 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/comsur/JurdakLB04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijon/GuermeurPEZPB04,
author = {Yann Guermeur and
Gianluca Pollastri and
Andr{\'{e}} Elisseeff and
Dominique Zelus and
H{\'{e}}l{\`{e}}ne Paugam{-}Moisy and
Pierre Baldi},
title = {Combining protein secondary structure prediction models with ensemble
methods of optimal complexity},
journal = {Neurocomputing},
volume = {56},
pages = {305--327},
year = {2004},
url = {https://doi.org/10.1016/j.neucom.2003.10.004},
doi = {10.1016/J.NEUCOM.2003.10.004},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ijon/GuermeurPEZPB04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icps/JurdakLB04,
author = {Raja Jurdak and
Cristina Videira Lopes and
Pierre Baldi},
title = {An Acoustic Identification Scheme for Location Systems},
booktitle = {The {IEEE/ACS} International Conference on Pervasive Services (ICPS'04),
July 19-23, 2004, American University of Beirut (AUB), Lebanon},
pages = {61--70},
publisher = {{IEEE} Computer Society},
year = {2004},
url = {https://doi.org/10.1109/PERSER.2004.1356767},
doi = {10.1109/PERSER.2004.1356767},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icps/JurdakLB04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/BaldiCV04,
author = {Pierre Baldi and
Jianlin Cheng and
Alessandro Vullo},
title = {Large-Scale Prediction of Disulphide Bond Connectivity},
booktitle = {Advances in Neural Information Processing Systems 17 [Neural Information
Processing Systems, {NIPS} 2004, December 13-18, 2004, Vancouver,
British Columbia, Canada]},
pages = {97--104},
year = {2004},
url = {https://proceedings.neurips.cc/paper/2004/hash/53c6de78244e9f528eb3e1cda69699bb-Abstract.html},
timestamp = {Mon, 16 May 2022 15:41:51 +0200},
biburl = {https://dblp.org/rec/conf/nips/BaldiCV04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@book{DBLP:books/wi/BaldiFS03,
author = {Pierre Baldi and
Paolo Frasconi and
Padhraic Smyth},
title = {Modeling the Internet and the Web: Probabilistic Method and Algorithms},
publisher = {John Wiley},
year = {2003},
url = {http://ibook.ics.uci.edu/},
isbn = {0-470-84906-1},
timestamp = {Wed, 10 Jul 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/books/wi/BaldiFS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jmlr/BaldiP03,
author = {Pierre Baldi and
Gianluca Pollastri},
title = {The Principled Design of Large-Scale Recursive Neural Network Architectures--DAG-RNNs
and the Protein Structure Prediction Problem},
journal = {J. Mach. Learn. Res.},
volume = {4},
pages = {575--602},
year = {2003},
url = {http://jmlr.org/papers/v4/baldi03a.html},
timestamp = {Wed, 10 Jul 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jmlr/BaldiP03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ai/Baldi03,
author = {Pierre Baldi},
editor = {Yang Xiang and
Brahim Chaib{-}draa},
title = {Machine Learning Methods for Computational Proteomics and Beyond},
booktitle = {Advances in Artificial Intelligence, 16th Conference of the Canadian
Society for Computational Studies of Intelligence, {AI} 2003, Halifax,
Canada, June 11-13, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2671},
pages = {8},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/3-540-44886-1\_3},
doi = {10.1007/3-540-44886-1\_3},
timestamp = {Thu, 28 Sep 2023 12:27:05 +0200},
biburl = {https://dblp.org/rec/conf/ai/Baldi03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@book{DBLP:books/daglib/0030826,
author = {Pierre Baldi},
title = {The Shattered Self - The End of Natural Evolution},
publisher = {{MIT} Press},
year = {2002},
url = {http://mitpress.mit.edu/books/shattered-self},
isbn = {978-0-262-52334-9},
timestamp = {Thu, 02 May 2013 01:00:00 +0200},
biburl = {https://dblp.org/rec/books/daglib/0030826.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HampsonKB02,
author = {Steven Hampson and
Dennis F. Kibler and
Pierre Baldi},
title = {Distribution patterns of over-represented k-mers in non-coding yeast
{DNA}},
journal = {Bioinform.},
volume = {18},
number = {4},
pages = {513--528},
year = {2002},
url = {https://doi.org/10.1093/bioinformatics/18.4.513},
doi = {10.1093/BIOINFORMATICS/18.4.513},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HampsonKB02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BaisneeHB02,
author = {Pierre{-}Fran{\c{c}}ois Baisn{\'{e}}e and
Steven Hampson and
Pierre Baldi},
title = {Why are complementary {DNA} strands symmetric?},
journal = {Bioinform.},
volume = {18},
number = {8},
pages = {1021--1033},
year = {2002},
url = {https://doi.org/10.1093/bioinformatics/18.8.1021},
doi = {10.1093/BIOINFORMATICS/18.8.1021},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BaisneeHB02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/expert/BaldiP02,
author = {Pierre Baldi and
Gianluca Pollastri},
title = {A Machine-Learning Strategy for Protein Analysis},
journal = {{IEEE} Intell. Syst.},
volume = {17},
number = {2},
pages = {28--35},
year = {2002},
url = {https://doi.org/10.1109/MIS.2002.999217},
doi = {10.1109/MIS.2002.999217},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/expert/BaldiP02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jsac/BaldiNB02,
author = {Pierre Baldi and
Luca De Nardis and
Maria{-}Gabriella Di Benedetto},
title = {Modeling and optimization of {UWB} communication networks through
a flexible cost function},
journal = {{IEEE} J. Sel. Areas Commun.},
volume = {20},
number = {9},
pages = {1733--1744},
year = {2002},
url = {https://doi.org/10.1109/JSAC.2002.805619},
doi = {10.1109/JSAC.2002.805619},
timestamp = {Thu, 02 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jsac/BaldiNB02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/PollastriB02,
author = {Gianluca Pollastri and
Pierre Baldi},
title = {Prediction of contact maps by GIOHMMs and recurrent neural networks
using lateral propagation from all four cardinal corners},
booktitle = {Proceedings of the Tenth International Conference on Intelligent Systems
for Molecular Biology, August 3-7, 2002, Edmonton, Alberta, Canada},
pages = {62--70},
year = {2002},
timestamp = {Wed, 29 Jun 2011 14:55:41 +0200},
biburl = {https://dblp.org/rec/conf/ismb/PollastriB02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/PollastriBVF02,
author = {Gianluca Pollastri and
Pierre Baldi and
Alessandro Vullo and
Paolo Frasconi},
editor = {Suzanna Becker and
Sebastian Thrun and
Klaus Obermayer},
title = {Prediction of Protein Topologies Using Generalized {IOHMMS} and RNNs},
booktitle = {Advances in Neural Information Processing Systems 15 [Neural Information
Processing Systems, {NIPS} 2002, December 9-14, 2002, Vancouver, British
Columbia, Canada]},
pages = {1449--1456},
publisher = {{MIT} Press},
year = {2002},
url = {https://proceedings.neurips.cc/paper/2002/hash/ffedf5be3a86e2ee281d54cdc97bc1cf-Abstract.html},
timestamp = {Mon, 16 May 2022 15:41:51 +0200},
biburl = {https://dblp.org/rec/conf/nips/PollastriBVF02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@book{DBLP:books/daglib/0009521,
author = {Pierre Baldi and
S{\o}ren Brunak},
title = {Bioinformatics - the machine learning approach {(2.} ed.)},
publisher = {{MIT} Press},
year = {2001},
isbn = {978-0-262-02506-5},
timestamp = {Fri, 15 Apr 2011 01:00:00 +0200},
biburl = {https://dblp.org/rec/books/daglib/0009521.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BaisneeBBP01,
author = {Pierre{-}Fran{\c{c}}ois Baisn{\'{e}}e and
Pierre Baldi and
S{\o}ren Brunak and
Anders Gorm Pedersen},
title = {Flexibility of the genetic code with respect to {DNA} structure},
journal = {Bioinform.},
volume = {17},
number = {3},
pages = {237--248},
year = {2001},
url = {https://doi.org/10.1093/bioinformatics/17.3.237},
doi = {10.1093/BIOINFORMATICS/17.3.237},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BaisneeBBP01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BaldiL01,
author = {Pierre Baldi and
Anthony D. Long},
title = {A Bayesian framework for the analysis of microarray expression data:
regularized t -test and statistical inferences of gene changes},
journal = {Bioinform.},
volume = {17},
number = {6},
pages = {509--519},
year = {2001},
url = {https://doi.org/10.1093/bioinformatics/17.6.509},
doi = {10.1093/BIOINFORMATICS/17.6.509},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BaldiL01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/PollastriBFC01,
author = {Gianluca Pollastri and
Pierre Baldi and
Piero Fariselli and
Rita Casadio},
title = {Improved prediction of the number of residue contacts in proteins
by recurrent neural networks},
booktitle = {Proceedings of the Ninth International Conference on Intelligent Systems
for Molecular Biology, July 21-25, 2001, Copenhagen, Denmark},
pages = {234--242},
year = {2001},
timestamp = {Fri, 18 Oct 2002 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ismb/PollastriBFC01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/BaldiB01,
author = {Pierre Baldi and
S{\o}ren Brunak},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein},
title = {Bioethics, Fiction Science, and the Future of Mankind - Session Introduction},
booktitle = {Proceedings of the 6th Pacific Symposium on Biocomputing, {PSB} 2001,
Hawaii, USA, January 3-7, 2001},
year = {2001},
timestamp = {Mon, 22 Jun 2015 17:24:45 +0200},
biburl = {https://dblp.org/rec/conf/psb/BaldiB01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/BaldiL01,
author = {Pierre Baldi and
Richard H. Lathrop},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein},
title = {{DNA} Structure, Protein-DNA Interactions, and DNA-Protein Expression
- Session Introduction},
booktitle = {Proceedings of the 6th Pacific Symposium on Biocomputing, {PSB} 2001,
Hawaii, USA, January 3-7, 2001},
pages = {101--102},
year = {2001},
url = {http://psb.stanford.edu/psb-online/proceedings/psb01/DNA.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/BaldiL01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/seqlearn/BaldiBFPS01,
author = {Pierre Baldi and
S{\o}ren Brunak and
Paolo Frasconi and
Gianluca Pollastri and
Giovanni Soda},
editor = {Ron Sun and
C. Lee Giles},
title = {Bidirectional Dynamics for Protein Secondary Structure Prediction},
booktitle = {Sequence Learning - Paradigms, Algorithms, and Applications},
series = {Lecture Notes in Computer Science},
volume = {1828},
pages = {80--104},
publisher = {Springer},
year = {2001},
url = {https://doi.org/10.1007/3-540-44565-X\_5},
doi = {10.1007/3-540-44565-X\_5},
timestamp = {Sun, 25 Oct 2020 23:14:05 +0100},
biburl = {https://dblp.org/rec/conf/seqlearn/BaldiBFPS01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@book{DBLP:books/daglib/0002479,
author = {Pierre Baldi and
S{\o}ren Brunak},
title = {Bioinformatics - the machine learning approach},
publisher = {{MIT} Press},
year = {2000},
isbn = {978-0-262-02442-6},
timestamp = {Mon, 18 Apr 2011 01:00:00 +0200},
biburl = {https://dblp.org/rec/books/daglib/0002479.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Baldi00,
author = {Pierre Baldi},
title = {On the convergence of a clustering algorithm for protein-coding regions
in microbial genomes},
journal = {Bioinform.},
volume = {16},
number = {4},
pages = {367--371},
year = {2000},
url = {https://doi.org/10.1093/bioinformatics/16.4.367},
doi = {10.1093/BIOINFORMATICS/16.4.367},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Baldi00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BaldiBCAN00,
author = {Pierre Baldi and
S{\o}ren Brunak and
Yves Chauvin and
Claus A. F. Andersen and
Henrik Nielsen},
title = {Assessing the accuracy of prediction algorithms for classification:
an overview},
journal = {Bioinform.},
volume = {16},
number = {5},
pages = {412--424},
year = {2000},
url = {https://doi.org/10.1093/bioinformatics/16.5.412},
doi = {10.1093/BIOINFORMATICS/16.5.412},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BaldiBCAN00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BaldiB00,
author = {Pierre Baldi and
Pierre{-}Fran{\c{c}}ois Baisn{\'{e}}e},
title = {Sequence analysis by additive scales: {DNA} structure for sequences
and repeats of all lengths},
journal = {Bioinform.},
volume = {16},
number = {10},
pages = {865--889},
year = {2000},
url = {https://doi.org/10.1093/bioinformatics/16.10.865},
doi = {10.1093/BIOINFORMATICS/16.10.865},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BaldiB00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/annimab/BaldiPAB00,
author = {Pierre Baldi and
Gianluca Pollastri and
Claus A. F. Andersen and
S{\o}ren Brunak},
editor = {Helge Malmgren and
Magnus Borga and
Lars Niklasson},
title = {Protein {\(\beta\)}-Sheet Partner Prediction by Neural Networks},
booktitle = {Artificial Neural Networks in Medicine and Biology, Proceedings of
the {ANNIMAB-1} Conference, G{\"{o}}teborg, Sweden, 13-16 May
2000},
series = {Perspectives in Neural Computing},
pages = {3--9},
publisher = {Springer},
year = {2000},
url = {https://doi.org/10.1007/978-1-4471-0513-8\_1},
doi = {10.1007/978-1-4471-0513-8\_1},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/annimab/BaldiPAB00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/BaldiPAB00,
author = {Pierre Baldi and
Gianluca Pollastri and
Claus A. F. Andersen and
S{\o}ren Brunak},
editor = {Philip E. Bourne and
Michael Gribskov and
Russ B. Altman and
Nancy Jensen and
Debra A. Hope and
Thomas Lengauer and
Julie C. Mitchell and
Eric D. Scheeff and
Chris Smith and
Shawn Strande and
Helge Weissig},
title = {Matching Protein b-Sheet Partners by Feedforward and Recurrent Neural
Networks},
booktitle = {Proceedings of the Eighth International Conference on Intelligent
Systems for Molecular Biology, August 19-23, 2000, La Jolla / San
Diego, CA, {USA}},
pages = {25--36},
publisher = {{AAAI}},
year = {2000},
url = {http://www.aaai.org/Library/ISMB/2000/ismb00-003.php},
timestamp = {Thu, 13 Dec 2012 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/BaldiPAB00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/HampsonBKS00,
author = {Steven Hampson and
Pierre Baldi and
Dennis F. Kibler and
Suzanne B. Sandmeyer},
editor = {Philip E. Bourne and
Michael Gribskov and
Russ B. Altman and
Nancy Jensen and
Debra A. Hope and
Thomas Lengauer and
Julie C. Mitchell and
Eric D. Scheeff and
Chris Smith and
Shawn Strande and
Helge Weissig},
title = {Analysis of Yeast's {ORF} Upstream Regions by Parallel Processing,
Microarrays, and Computational Methods},
booktitle = {Proceedings of the Eighth International Conference on Intelligent
Systems for Molecular Biology, August 19-23, 2000, La Jolla / San
Diego, CA, {USA}},
pages = {190--201},
publisher = {{AAAI}},
year = {2000},
url = {http://www.aaai.org/Library/ISMB/2000/ismb00-020.php},
timestamp = {Thu, 13 Dec 2012 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/HampsonBKS00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BaldiBCP99,
author = {Pierre Baldi and
S{\o}ren Brunak and
Yves Chauvin and
Anders Gorm Pedersen},
title = {Structural basis for triplet repeat disorders: a computational analysis},
journal = {Bioinform.},
volume = {15},
number = {11},
pages = {918--929},
year = {1999},
url = {https://doi.org/10.1093/bioinformatics/15.11.918},
doi = {10.1093/BIOINFORMATICS/15.11.918},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BaldiBCP99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BaldiBFSP99,
author = {Pierre Baldi and
S{\o}ren Brunak and
Paolo Frasconi and
Giovanni Soda and
Gianluca Pollastri},
title = {Exploiting the past and the future in protein secondary structure
prediction},
journal = {Bioinform.},
volume = {15},
number = {11},
pages = {937--946},
year = {1999},
url = {https://doi.org/10.1093/bioinformatics/15.11.937},
doi = {10.1093/BIOINFORMATICS/15.11.937},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BaldiBFSP99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/candc/PedersenBCB99,
author = {Anders Gorm Pedersen and
Pierre Baldi and
Yves Chauvin and
S{\o}ren Brunak},
title = {The Biology of Eukaryotic Promoter Prediction - {A} Review},
journal = {Comput. Chem.},
volume = {23},
number = {3-4},
pages = {191--207},
year = {1999},
url = {https://doi.org/10.1016/S0097-8485(99)00015-7},
doi = {10.1016/S0097-8485(99)00015-7},
timestamp = {Mon, 18 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/candc/PedersenBCB99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcns/BaldiVB98,
author = {Pierre Baldi and
Michael C. Vanier and
James M. Bower},
title = {On the Use of Bayesian Methods for Evaluating Compartmental Neural
Models},
journal = {J. Comput. Neurosci.},
volume = {5},
number = {3},
pages = {285--314},
year = {1998},
url = {https://doi.org/10.1023/A:1008887028637},
doi = {10.1023/A:1008887028637},
timestamp = {Thu, 16 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcns/BaldiVB98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/BaldiBCP98,
author = {Pierre Baldi and
S{\o}ren Brunak and
Yves Chauvin and
Anders Gorm Pedersen},
editor = {Janice I. Glasgow and
Timothy G. Littlejohn and
Fran{\c{c}}ois Major and
Richard H. Lathrop and
David Sankoff and
Christoph W. Sensen},
title = {Computational Applications of {DNA} Structural Scales},
booktitle = {Proceedings of the 6th International Conference on Intelligent Systems
for Molecular Biology (ISMB-98), Montr{\'{e}}al, Qu{\'{e}}bec,
Canada, June 28 - July 1, 1998},
pages = {35--42},
publisher = {{AAAI}},
year = {1998},
url = {http://www.aaai.org/Library/ISMB/1998/ismb98-005.php},
timestamp = {Thu, 27 Jun 2019 11:28:34 +0200},
biburl = {https://dblp.org/rec/conf/ismb/BaldiBCP98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nn/Baldi97,
author = {Pierre Baldi},
editor = {C. Lee Giles and
Marco Gori},
title = {Probabilistic Models of Neuronal Spike Trains},
booktitle = {Adaptive Processing of Sequences and Data Structures, International
Summer School on Neural Networks, "E.R. Caianiello", Vietri sul Mare,
Salerno, Italy, September 6-13, 1997, Tutorial Lectures},
series = {Lecture Notes in Computer Science},
volume = {1387},
pages = {198--228},
publisher = {Springer},
year = {1997},
url = {https://doi.org/10.1007/BFb0054000},
doi = {10.1007/BFB0054000},
timestamp = {Sun, 25 Oct 2020 22:53:04 +0100},
biburl = {https://dblp.org/rec/conf/nn/Baldi97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neco/BaldiC96,
author = {Pierre Baldi and
Yves Chauvin},
title = {Hybrid Modeling, {HMM/NN} Architectures, and Protein Applications},
journal = {Neural Comput.},
volume = {8},
number = {7},
pages = {1541--1565},
year = {1996},
url = {https://doi.org/10.1162/neco.1996.8.7.1541},
doi = {10.1162/NECO.1996.8.7.1541},
timestamp = {Tue, 01 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/neco/BaldiC96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/PedersenBBC96,
author = {Anders Gorm Pedersen and
Pierre Baldi and
S{\o}ren Brunak and
Yves Chauvin},
editor = {David J. States and
Pankaj Agarwal and
Terry Gaasterland and
Lawrence Hunter and
Randall Smith},
title = {Characterization of Prokaryotic and Eukaryotic Promoters Using Hidden
Markov Models},
booktitle = {Proceedings of the Fourth International Conference on Intelligent
Systems for Molecular Biology, St. Louis, MO, USA, June 12-15 1996},
pages = {182--191},
publisher = {{AAAI}},
year = {1996},
url = {http://www.aaai.org/Library/ISMB/1996/ismb96-020.php},
timestamp = {Thu, 13 Dec 2012 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/PedersenBBC96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/Baldi95,
author = {Pierre Baldi},
title = {Substitution Matrices and Hidden Markov Models},
journal = {J. Comput. Biol.},
volume = {2},
number = {3},
pages = {487--491},
year = {1995},
url = {https://doi.org/10.1089/cmb.1995.2.487},
doi = {10.1089/CMB.1995.2.487},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/Baldi95.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tnn/Baldi95,
author = {Pierre Baldi},
title = {Gradient descent learning algorithm overview: a general dynamical
systems perspective},
journal = {{IEEE} Trans. Neural Networks},
volume = {6},
number = {1},
pages = {182--195},
year = {1995},
url = {https://doi.org/10.1109/72.363438},
doi = {10.1109/72.363438},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tnn/Baldi95.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tnn/BaldiH95,
author = {Pierre Baldi and
Kurt Hornik},
title = {Learning in linear neural networks: a survey},
journal = {{IEEE} Trans. Neural Networks},
volume = {6},
number = {4},
pages = {837--858},
year = {1995},
url = {https://doi.org/10.1109/72.392248},
doi = {10.1109/72.392248},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tnn/BaldiH95.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/BaldiBCEK95,
author = {Pierre Baldi and
S{\o}ren Brunak and
Yves Chauvin and
Jacob Engelbrecht and
Anders Krogh},
editor = {Christopher J. Rawlings and
Dominic A. Clark and
Russ B. Altman and
Lawrence Hunter and
Thomas Lengauer and
Shoshana J. Wodak},
title = {Periodic Sequence Patterns in Human Exons},
booktitle = {Proceedings of the Third International Conference on Intelligent Systems
for Molecular Biology, Cambridge, United Kingdom, July 16-19, 1995},
pages = {30--38},
publisher = {{AAAI}},
year = {1995},
url = {http://www.aaai.org/Library/ISMB/1995/ismb95-004.php},
timestamp = {Thu, 13 Dec 2012 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/BaldiBCEK95.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/BaldiC95,
author = {Pierre Baldi and
Yves Chauvin},
editor = {Christopher J. Rawlings and
Dominic A. Clark and
Russ B. Altman and
Lawrence Hunter and
Thomas Lengauer and
Shoshana J. Wodak},
title = {Protein Modeling with Hybrid Hidden Markov Model/Neural Network Architectures},
booktitle = {Proceedings of the Third International Conference on Intelligent Systems
for Molecular Biology, Cambridge, United Kingdom, July 16-19, 1995},
pages = {39--47},
publisher = {{AAAI}},
year = {1995},
url = {http://www.aaai.org/Library/ISMB/1995/ismb95-005.php},
timestamp = {Thu, 13 Dec 2012 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/BaldiC95.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/BaldiH95,
author = {Pierre Baldi and
Kurt Hornik},
editor = {David S. Touretzky and
Michael Mozer and
Michael E. Hasselmo},
title = {Universal Approximnation and Learning of Trajectories Using Oscillators},
booktitle = {Advances in Neural Information Processing Systems 8, NIPS, Denver,
CO, USA, November 27-30, 1995},
pages = {451--457},
publisher = {{MIT} Press},
year = {1995},
url = {http://papers.nips.cc/paper/1062-universal-approximation-and-learning-of-trajectories-using-oscillators},
timestamp = {Mon, 16 May 2022 15:41:51 +0200},
biburl = {https://dblp.org/rec/conf/nips/BaldiH95.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/BaldiC94,
author = {Pierre Baldi and
Yves Chauvin},
title = {Hidden Markov Models of the G-Protein-Coupled Receptor Family},
journal = {J. Comput. Biol.},
volume = {1},
number = {4},
pages = {311--336},
year = {1994},
url = {https://doi.org/10.1089/cmb.1994.1.311},
doi = {10.1089/CMB.1994.1.311},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/BaldiC94.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neco/BaldiC94,
author = {Pierre Baldi and
Yves Chauvin},
title = {Smooth On-Line Learning Algorithms for Hidden Markov Models},
journal = {Neural Comput.},
volume = {6},
number = {2},
pages = {307--318},
year = {1994},
url = {https://doi.org/10.1162/neco.1994.6.2.307},
doi = {10.1162/NECO.1994.6.2.307},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/neco/BaldiC94.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tnn/BaldiA94,
author = {Pierre Baldi and
Amir F. Atiya},
title = {How delays affect neural dynamics and learning},
journal = {{IEEE} Trans. Neural Networks},
volume = {5},
number = {4},
pages = {612--621},
year = {1994},
url = {https://doi.org/10.1109/72.298231},
doi = {10.1109/72.298231},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tnn/BaldiA94.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/SmythFBPB94,
author = {Padhraic Smyth and
Usama M. Fayyad and
Michael C. Burl and
Pietro Perona and
Pierre Baldi},
editor = {Gerald Tesauro and
David S. Touretzky and
Todd K. Leen},
title = {Inferring Ground Truth from Subjective Labelling of Venus Images},
booktitle = {Advances in Neural Information Processing Systems 7, {[NIPS} Conference,
Denver, Colorado, USA, 1994]},
pages = {1085--1092},
publisher = {{MIT} Press},
year = {1994},
url = {http://papers.nips.cc/paper/949-inferring-ground-truth-from-subjective-labelling-of-venus-images},
timestamp = {Mon, 16 May 2022 15:41:51 +0200},
biburl = {https://dblp.org/rec/conf/nips/SmythFBPB94.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neco/BaldiC93,
author = {Pierre Baldi and
Yves Chauvin},
title = {Neural Networks for Fingerprint Recognition},
journal = {Neural Comput.},
volume = {5},
number = {3},
pages = {402--418},
year = {1993},
url = {https://doi.org/10.1162/neco.1993.5.3.402},
doi = {10.1162/NECO.1993.5.3.402},
timestamp = {Tue, 01 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/neco/BaldiC93.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tit/BaldiV93,
author = {Pierre Baldi and
Santosh S. Venkatesh},
title = {Random interactions in higher order neural networks},
journal = {{IEEE} Trans. Inf. Theory},
volume = {39},
number = {1},
pages = {274--283},
year = {1993},
url = {https://doi.org/10.1109/18.179374},
doi = {10.1109/18.179374},
timestamp = {Tue, 10 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tit/BaldiV93.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/esann/ToomarianB93,
author = {Nikzad Benny Toomarian and
Pierre Baldi},
title = {Trajectory learning using hierarchy of oscillatory modules},
booktitle = {1st European Symposium on Artificial Neural Networks, {ESANN} 1993,
Brussels, Belgium, April 7-9, 1993, Proceedings},
year = {1993},
url = {https://www.esann.org/sites/default/files/proceedings/legacy/es1993-528-S.pdf},
timestamp = {Tue, 02 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/esann/ToomarianB93.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icnn/BaldiT93,
author = {Pierre Baldi and
Nikzad Benny Toomarian},
title = {Learning trajectories with a hierarchy of oscillatory modules},
booktitle = {Proceedings of International Conference on Neural Networks (ICNN'88),
San Francisco, CA, USA, March 28 - April 1, 1993},
pages = {1172--1176},
publisher = {{IEEE}},
year = {1993},
url = {https://doi.org/10.1109/ICNN.1993.298723},
doi = {10.1109/ICNN.1993.298723},
timestamp = {Wed, 04 Sep 2019 08:33:25 +0200},
biburl = {https://dblp.org/rec/conf/icnn/BaldiT93.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/BaldiBCEK93,
author = {Pierre Baldi and
S{\o}ren Brunak and
Yves Chauvin and
Jacob Engelbrecht and
Anders Krogh},
editor = {Jack D. Cowan and
Gerald Tesauro and
Joshua Alspector},
title = {Hidden Markov Models for Human Genes},
booktitle = {Advances in Neural Information Processing Systems 6, [7th {NIPS} Conference,
Denver, Colorado, USA, 1993]},
pages = {761--768},
publisher = {Morgan Kaufmann},
year = {1993},
url = {http://papers.nips.cc/paper/761-hidden-markov-models-for-human-genes},
timestamp = {Mon, 16 May 2022 15:41:51 +0200},
biburl = {https://dblp.org/rec/conf/nips/BaldiBCEK93.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/BaldiCHM92,
author = {Pierre Baldi and
Yves Chauvin and
Tim Hunkapiller and
Marcella A. McClure},
editor = {Stephen Jose Hanson and
Jack D. Cowan and
C. Lee Giles},
title = {Hidden Markov Models in Molecular Biology: New Algorithms and Applications},
booktitle = {Advances in Neural Information Processing Systems 5, {[NIPS} Conference,
Denver, Colorado, USA, November 30 - December 3, 1992]},
pages = {747--754},
publisher = {Morgan Kaufmann},
year = {1992},
url = {http://papers.nips.cc/paper/629-hidden-markov-models-in-molecular-biology-new-algorithms-and-applications},
timestamp = {Mon, 16 May 2022 15:41:51 +0200},
biburl = {https://dblp.org/rec/conf/nips/BaldiCHM92.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jc/VenkateshB91,
author = {Santosh S. Venkatesh and
Pierre Baldi},
title = {Programmed interactions in higher-order neural networks: Maximal capacity},
journal = {J. Complex.},
volume = {7},
number = {3},
pages = {316--337},
year = {1991},
url = {https://doi.org/10.1016/0885-064X(91)90040-5},
doi = {10.1016/0885-064X(91)90040-5},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jc/VenkateshB91.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jc/VenkateshtB91,
author = {Santosh S. Venkatesh and
Pierre Baldi},
title = {Programmed interactions in higher-order neural networks: The outer-product
algorithm},
journal = {J. Complex.},
volume = {7},
number = {4},
pages = {443--479},
year = {1991},
url = {https://doi.org/10.1016/0885-064X(91)90030-2},
doi = {10.1016/0885-064X(91)90030-2},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jc/VenkateshtB91.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neco/BaldiP91,
author = {Pierre Baldi and
Fernando J. Pineda},
title = {Contrastive Learning and Neural Oscillations},
journal = {Neural Comput.},
volume = {3},
number = {4},
pages = {526--545},
year = {1991},
url = {https://doi.org/10.1162/neco.1991.3.4.526},
doi = {10.1162/NECO.1991.3.4.526},
timestamp = {Tue, 01 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/neco/BaldiP91.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neco/BaldiC91,
author = {Pierre Baldi and
Yves Chauvin},
title = {Temporal Evolution of Generalization during Learning in Linear Networks},
journal = {Neural Comput.},
volume = {3},
number = {4},
pages = {589--603},
year = {1991},
url = {https://doi.org/10.1162/neco.1991.3.4.589},
doi = {10.1162/NECO.1991.3.4.589},
timestamp = {Tue, 01 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/neco/BaldiC91.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gc/Baldi90,
author = {Pierre Baldi},
title = {On a generalized family of colorings},
journal = {Graphs Comb.},
volume = {6},
number = {2},
pages = {95--110},
year = {1990},
url = {https://doi.org/10.1007/BF01787722},
doi = {10.1007/BF01787722},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/gc/Baldi90.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neco/BaldiM90,
author = {Pierre Baldi and
Ronny Meir},
title = {Computing with Arrays of Coupled Oscillators: An Application to Preattentive
Texture Discrimination},
journal = {Neural Comput.},
volume = {2},
number = {4},
pages = {458--471},
year = {1990},
url = {https://doi.org/10.1162/neco.1990.2.4.458},
doi = {10.1162/NECO.1990.2.4.458},
timestamp = {Tue, 01 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/neco/BaldiM90.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/Baldi90,
author = {Pierre Baldi},
editor = {Richard Lippmann and
John E. Moody and
David S. Touretzky},
title = {Computing with Arrays of Bell-Shaped and Sigmoid Functions},
booktitle = {Advances in Neural Information Processing Systems 3, {[NIPS} Conference,
Denver, Colorado, USA, November 26-29, 1990]},
pages = {735--742},
publisher = {Morgan Kaufmann},
year = {1990},
url = {http://papers.nips.cc/paper/412-computing-with-arrays-of-bell-shaped-and-sigmoid-functions},
timestamp = {Mon, 16 May 2022 15:41:51 +0200},
biburl = {https://dblp.org/rec/conf/nips/Baldi90.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijns/AtiyaB89,
author = {Amir F. Atiya and
Pierre Baldi},
title = {Oscillations and Synchronizations in Neural Networks: an Exploration
of the Labeling Hypothesis},
journal = {Int. J. Neural Syst.},
volume = {1},
number = {2},
pages = {103--124},
year = {1989},
url = {https://doi.org/10.1142/S0129065789000025},
doi = {10.1142/S0129065789000025},
timestamp = {Sun, 28 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijns/AtiyaB89.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nn/BaldiH89,
author = {Pierre Baldi and
Kurt Hornik},
title = {Neural networks and principal component analysis: Learning from examples
without local minima},
journal = {Neural Networks},
volume = {2},
number = {1},
pages = {53--58},
year = {1989},
url = {https://doi.org/10.1016/0893-6080(89)90014-2},
doi = {10.1016/0893-6080(89)90014-2},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nn/BaldiH89.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/BaldiRS89,
author = {Pierre Baldi and
Yosef Rinott and
Charles Stein},
editor = {David S. Touretzky},
title = {On the Distribution of the Number of Local Minima of a Random Function
on a Graph},
booktitle = {Advances in Neural Information Processing Systems 2, {[NIPS} Conference,
Denver, Colorado, USA, November 27-30, 1989]},
pages = {727--732},
publisher = {Morgan Kaufmann},
year = {1989},
url = {http://papers.nips.cc/paper/274-on-the-distribution-of-the-number-of-local-minima-of-a-random-function-on-a-graph},
timestamp = {Mon, 16 May 2022 15:41:51 +0200},
biburl = {https://dblp.org/rec/conf/nips/BaldiRS89.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcss/Baldi88,
author = {Pierre Baldi},
title = {Group Actions and Learning for a Family of Automata},
journal = {J. Comput. Syst. Sci.},
volume = {36},
number = {1},
pages = {1--15},
year = {1988},
url = {https://doi.org/10.1016/0022-0000(88)90017-7},
doi = {10.1016/0022-0000(88)90017-7},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcss/Baldi88.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/siamdm/Baldi88,
author = {Pierre Baldi},
title = {Neural Networks, Acyclic Orientations of the Hypercube, and Sets of
Orthogonal Vectors},
journal = {{SIAM} J. Discret. Math.},
volume = {1},
number = {1},
pages = {1--13},
year = {1988},
url = {https://doi.org/10.1137/0401001},
doi = {10.1137/0401001},
timestamp = {Sat, 25 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/siamdm/Baldi88.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tit/Baldi88,
author = {Pierre Baldi},
title = {Neural networks, orientations of the hypercube, and algebraic threshold
functions},
journal = {{IEEE} Trans. Inf. Theory},
volume = {34},
number = {3},
pages = {523--530},
year = {1988},
url = {https://doi.org/10.1109/18.6032},
doi = {10.1109/18.6032},
timestamp = {Tue, 10 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tit/Baldi88.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/Baldi88,
author = {Pierre Baldi},
editor = {David S. Touretzky},
title = {Linear Learning: Landscapes and Algorithms},
booktitle = {Advances in Neural Information Processing Systems 1, {[NIPS} Conference,
Denver, Colorado, USA, 1988]},
pages = {65--72},
publisher = {Morgan Kaufmann},
year = {1988},
url = {http://papers.nips.cc/paper/123-linear-learning-landscapes-and-algorithms},
timestamp = {Mon, 16 May 2022 15:41:51 +0200},
biburl = {https://dblp.org/rec/conf/nips/Baldi88.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/BaldiV87,
author = {Pierre Baldi and
Santosh S. Venkatesh},
editor = {Dana Z. Anderson},
title = {On Properties of Networks of Neuron-Like Elements},
booktitle = {Neural Information Processing Systems, Denver, Colorado, USA, 1987},
pages = {41--51},
publisher = {American Institue of Physics},
year = {1987},
url = {http://papers.nips.cc/paper/66-on-properties-of-networks-of-neuron-like-elements},
timestamp = {Mon, 16 May 2022 15:41:51 +0200},
biburl = {https://dblp.org/rec/conf/nips/BaldiV87.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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