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ORCIDBibTeX records: Valentina Boeva
@article{DBLP:journals/bib/YatesB22,
author = {Josephine Yates and
Valentina Boeva},
title = {Deciphering the etiology and role in oncogenic transformation of the
CpG island methylator phenotype: a pan-cancer analysis},
journal = {Briefings Bioinform.},
volume = {23},
number = {2},
year = {2022},
url = {https://doi.org/10.1093/bib/bbab610},
doi = {10.1093/BIB/BBAB610},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/YatesB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PolitKGEGB21,
author = {L{\'{e}}lia Polit and
Gwenneg Kerdivel and
Sebastian Gregoricchio and
Michela Esposito and
Christel Guillouf and
Valentina Boeva},
title = {{CHIPIN:} ChIP-seq inter-sample normalization based on signal invariance
across transcriptionally constant genes},
journal = {{BMC} Bioinform.},
volume = {22},
number = {1},
pages = {407},
year = {2021},
url = {https://doi.org/10.1186/s12859-021-04320-3},
doi = {10.1186/S12859-021-04320-3},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/PolitKGEGB21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DeveauDOBBCCLCB18,
author = {Paul Deveau and
Leo Colmet Daage and
Derek Oldridge and
Virginie Bernard and
Angela Bellini and
Mathieu Chicard and
Nathalie Clement and
Eve Lapouble and
Valerie Combaret and
Anne Boland and
Vincent Meyer and
Jean{-}Francois Deleuze and
Isabelle Janoueix{-}Lerosey and
Emmanuel Barillot and
Olivier Delattre and
John M. Maris and
Gudrun Schleiermacher and
Valentina Boeva},
title = {QuantumClone: clonal assessment of functional mutations in cancer
based on a genotype-aware method for clonal reconstruction},
journal = {Bioinform.},
volume = {34},
number = {11},
pages = {1808--1816},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty016},
doi = {10.1093/BIOINFORMATICS/BTY016},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DeveauDOBBCCLCB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BrindaBK16,
author = {Karel Brinda and
Valentina Boeva and
Gregory Kucherov},
title = {{RNF:} a general framework to evaluate {NGS} read mappers},
journal = {Bioinform.},
volume = {32},
number = {1},
pages = {136--139},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv524},
doi = {10.1093/BIOINFORMATICS/BTV524},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BrindaBK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/IakovishinaJBRB16,
author = {Daria Iakovishina and
Isabelle Janoueix{-}Lerosey and
Emmanuel Barillot and
Mireille R{\'{e}}gnier and
Valentina Boeva},
title = {SV-Bay: structural variant detection in cancer genomes using a Bayesian
approach with correction for GC-content and read mappability},
journal = {Bioinform.},
volume = {32},
number = {7},
pages = {984--992},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv751},
doi = {10.1093/BIOINFORMATICS/BTV751},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/IakovishinaJBRB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/rjour/DeveauBBZB16,
author = {Paul Deveau and
Emmanuel Barillot and
Valentina Boeva and
Andrei Yu. Zinovyev and
Eric Bonnet},
title = {Calculating Biological Module Enrichment or Depletion and Visualizing
Data on Large-scale Molecular Maps with ACSNMineR and RNaviCell Packages},
journal = {R J.},
volume = {8},
number = {2},
pages = {293},
year = {2016},
url = {https://doi.org/10.32614/rj-2016-047},
doi = {10.32614/RJ-2016-047},
timestamp = {Tue, 10 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/rjour/DeveauBBZB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HockingBRSJDRBSSBV14,
author = {Toby Dylan Hocking and
Valentina Boeva and
Guillem Rigaill and
Gudrun Schleiermacher and
Isabelle Janoueix{-}Lerosey and
Olivier Delattre and
Wilfrid Richer and
Franck Bourdeaut and
Miyuki Suguro and
Masao Seto and
Francis R. Bach and
Jean{-}Philippe Vert},
title = {SegAnnDB: interactive Web-based genomic segmentation},
journal = {Bioinform.},
volume = {30},
number = {11},
pages = {1539--1546},
year = {2014},
url = {https://doi.org/10.1093/bioinformatics/btu072},
doi = {10.1093/BIOINFORMATICS/BTU072},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HockingBRSJDRBSSBV14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BoevaPLTKTGSGFHBL14,
author = {Valentina Boeva and
Tatiana G. Popova and
Maxime Lienard and
Sebastien Toffoli and
Maud Kamal and
Christophe Le Tourneau and
David Gentien and
Nicolas Servant and
Pierre Gestraud and
Thomas Rio Frio and
Philippe Hup{\'{e}} and
Emmanuel Barillot and
Jean{-}Fran{\c{c}}ois Laes},
title = {Multi-factor data normalization enables the detection of copy number
aberrations in amplicon sequencing data},
journal = {Bioinform.},
volume = {30},
number = {24},
pages = {3443--3450},
year = {2014},
url = {https://doi.org/10.1093/bioinformatics/btu436},
doi = {10.1093/BIOINFORMATICS/BTU436},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BoevaPLTKTGSGFHBL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AshoorHKRBBB13,
author = {Haitham Ashoor and
Aur{\'{e}}lie H{\'{e}}rault and
Aur{\'{e}}lie Kamoun and
Fran{\c{c}}ois Radvanyi and
Vladimir B. Bajic and
Emmanuel Barillot and
Valentina Boeva},
title = {HMCan: a method for detecting chromatin modifications in cancer samples
using ChIP-seq data},
journal = {Bioinform.},
volume = {29},
number = {23},
pages = {2979--2986},
year = {2013},
url = {https://doi.org/10.1093/bioinformatics/btt524},
doi = {10.1093/BIOINFORMATICS/BTT524},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AshoorHKRBBB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HockingSJBCDBV13,
author = {Toby Dylan Hocking and
Gudrun Schleiermacher and
Isabelle Janoueix{-}Lerosey and
Valentina Boeva and
Julie Cappo and
Olivier Delattre and
Francis R. Bach and
Jean{-}Philippe Vert},
title = {Learning smoothing models of copy number profiles using breakpoint
annotations},
journal = {{BMC} Bioinform.},
volume = {14},
pages = {164},
year = {2013},
url = {https://doi.org/10.1186/1471-2105-14-164},
doi = {10.1186/1471-2105-14-164},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HockingSJBCDBV13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BoevaPBCCSJDB12,
author = {Valentina Boeva and
Tatiana G. Popova and
Kevin Bleakley and
Pierre Chiche and
Julie Cappo and
Gudrun Schleiermacher and
Isabelle Janoueix{-}Lerosey and
Olivier Delattre and
Emmanuel Barillot},
title = {Control-FREEC: a tool for assessing copy number and allelic content
using next-generation sequencing data},
journal = {Bioinform.},
volume = {28},
number = {3},
pages = {423--425},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr670},
doi = {10.1093/BIOINFORMATICS/BTR670},
timestamp = {Tue, 09 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BoevaPBCCSJDB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BoevaLBGB12,
author = {Valentina Boeva and
Alban Lermine and
Camille Barette and
Christel Guillouf and
Emmanuel Barillot},
title = {Nebula - a web-server for advanced ChIP-seq data analysis},
journal = {Bioinform.},
volume = {28},
number = {19},
pages = {2517--2519},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts463},
doi = {10.1093/BIOINFORMATICS/BTS463},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BoevaLBGB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BoevaZBVJDB11,
author = {Valentina Boeva and
Andrei Yu. Zinovyev and
Kevin Bleakley and
Jean{-}Philippe Vert and
Isabelle Janoueix{-}Lerosey and
Olivier Delattre and
Emmanuel Barillot},
title = {Control-free calling of copy number alterations in deep-sequencing
data using GC-content normalization},
journal = {Bioinform.},
volume = {27},
number = {2},
pages = {268--269},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq635},
doi = {10.1093/BIOINFORMATICS/BTQ635},
timestamp = {Tue, 10 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BoevaZBVJDB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZeitouniBJLLNDB10,
author = {Bruno Zeitouni and
Valentina Boeva and
Isabelle Janoueix{-}Lerosey and
Sophie Loeillet and
Patricia Legoix{-}n{\'{e}} and
Alain Nicolas and
Olivier Delattre and
Emmanuel Barillot},
title = {SVDetect: a tool to identify genomic structural variations from paired-end
and mate-pair sequencing data},
journal = {Bioinform.},
volume = {26},
number = {15},
pages = {1895--1896},
year = {2010},
url = {https://doi.org/10.1093/bioinformatics/btq293},
doi = {10.1093/BIOINFORMATICS/BTQ293},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZeitouniBJLLNDB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KulakovskiyBFM10,
author = {Ivan V. Kulakovskiy and
Valentina Boeva and
Alexander V. Favorov and
Vsevolod J. Makeev},
title = {Deep and wide digging for binding motifs in ChIP-Seq data},
journal = {Bioinform.},
volume = {26},
number = {20},
pages = {2622--2623},
year = {2010},
url = {https://doi.org/10.1093/bioinformatics/btq488},
doi = {10.1093/BIOINFORMATICS/BTQ488},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KulakovskiyBFM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/BoevaCRRM07,
author = {Valentina Boeva and
Julien Cl{\'{e}}ment and
Mireille R{\'{e}}gnier and
Mikhail A. Roytberg and
Vsevolod J. Makeev},
title = {Exact p-value calculation for heterotypic clusters of regulatory motifs
and its application in computational annotation of \emph{cis}-regulatory
modules},
journal = {Algorithms Mol. Biol.},
volume = {2},
year = {2007},
url = {https://doi.org/10.1186/1748-7188-2-13},
doi = {10.1186/1748-7188-2-13},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/almob/BoevaCRRM07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BoevaRPM06,
author = {Valentina Boeva and
Mireille R{\'{e}}gnier and
Dmitri A. Papatsenko and
Vsevolod J. Makeev},
title = {Short fuzzy tandem repeats in genomic sequences, identification, and
possible role in regulation of gene expression},
journal = {Bioinform.},
volume = {22},
number = {6},
pages = {676--684},
year = {2006},
url = {https://doi.org/10.1093/bioinformatics/btk032},
doi = {10.1093/BIOINFORMATICS/BTK032},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BoevaRPM06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cpm/BoevaCRV05,
author = {Valentina Boeva and
Julien Cl{\'{e}}ment and
Mireille R{\'{e}}gnier and
Mathias Vandenbogaert},
editor = {Alberto Apostolico and
Maxime Crochemore and
Kunsoo Park},
title = {Assessing the Significance of Sets of Words},
booktitle = {Combinatorial Pattern Matching, 16th Annual Symposium, {CPM} 2005,
Jeju Island, Korea, June 19-22, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3537},
pages = {358--370},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11496656\_31},
doi = {10.1007/11496656\_31},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cpm/BoevaCRV05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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