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BibTeX records: José María Carazo
@article{DBLP:journals/nar/VaradiAABCDNNPT22, author = {Mihaly Varadi and Stephen Anyango and David R. Armstrong and John M. Berrisford and Preeti Choudhary and Mandar S. Deshpande and Nurul Nadzirin and Sreenath Nair and Luk{\'{a}}s Pravda and Ahsan Tanweer and Bissan Al{-}Lazikani and Claudia Andreini and Geoffrey J. Barton and David Bednar and Karel Berka and Tom L. Blundell and Kelly Brock and Jos{\'{e}} Mar{\'{\i}}a Carazo and Jir{\'{\i}} Damborsk{\'{y}} and Alessia David and Sucharita Dey and Roland L. Dunbrack Jr. and Juan Fern{\'{a}}ndez{-}Recio and Franca Fraternali and Toby J. Gibson and Manuela Helmer{-}Citterich and David Hoksza and Thomas A. Hopf and David Jakubec and Natarajan Kannan and Radoslav Kriv{\'{a}}k and Manjeet Kumar and Emmanuel D. Levy and Nir London and Jos{\'{e}} Ram{\'{o}}n Mac{\'{\i}}as and Mallur Srivatsan Madhusudhan and Debora S. Marks and Lennart Martens and Stuart A McGowan and Jake E. McGreig and Vivek Modi and R. Gonzalo Parra and Gerardo Pepe and Damiano Piovesan and Jaime Prilusky and Valeria Putignano and Leandro G. Radusky and Pathmanaban Ramasamy and Atilio O. Rausch and Nathalie Reuter and Luis A. Rodriguez and Nathan J. Rollins and Antonio Rosato and Pawel Rubach and Luis Serrano and Gulzar Singh and Petr Skoda and Carlos Oscar S{\'{a}}nchez Sorzano and Jan Stourac and Joanna I. Sulkowska and Radka Svobodov{\'{a}} Varekov{\'{a}} and Natalia Tichshenko and Silvio C. E. Tosatto and Wim F. Vranken and Mark N. Wass and Dandan Xue and Daniel Zaidman and Janet M. Thornton and Michael J. E. Sternberg and Christine A. Orengo and Sameer Velankar}, title = {PDBe-KB: collaboratively defining the biological context of structural data}, journal = {Nucleic Acids Res.}, volume = {50}, number = {{D1}}, pages = {534--542}, year = {2022}, url = {https://doi.org/10.1093/nar/gkab988}, doi = {10.1093/NAR/GKAB988}, timestamp = {Sun, 12 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/nar/VaradiAABCDNNPT22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/MaciasGCRMWPMHTSC21, author = {Jos{\'{e}} Ram{\'{o}}n Mac{\'{\i}}as and Rub{\'{e}}n S{\'{a}}nchez Garc{\'{\i}}a and Pablo Conesa and Erney Ram{\'{\i}}rez{-}Aportela and Marta Mart{\'{\i}}nez and Carlos Wert{-}Carvajal and Alberto M. Parra{-}Perez and Joan Segura Mora and Sam Horrell and Andrea Thorn and Carlos Oscar S{\'{a}}nchez Sorzano and Jos{\'{e}} Mar{\'{\i}}a Carazo}, title = {3DBionotes {COVID-19} edition}, journal = {Bioinform.}, volume = {37}, number = {22}, pages = {4258--4260}, year = {2021}, url = {https://doi.org/10.1093/bioinformatics/btab397}, doi = {10.1093/BIOINFORMATICS/BTAB397}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/MaciasGCRMWPMHTSC21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/Ramirez-Aportela20, author = {Erney Ram{\'{\i}}rez{-}Aportela and Jose Luis Vilas and Alisa Glukhova and Roberto Melero and Pablo Conesa and Marta Mart{\'{\i}}nez and David Maluenda and Javier Mota and Amaya Jim{\'{e}}nez and Javier Vargas and Roberto Marabini and Patrick M. Sexton and Jos{\'{e}} Mar{\'{\i}}a Carazo and Carlos Oscar S{\'{a}}nchez Sorzano}, title = {Automatic local resolution-based sharpening of cryo-EM maps}, journal = {Bioinform.}, volume = {36}, number = {3}, pages = {765--772}, year = {2020}, url = {https://doi.org/10.1093/bioinformatics/btz671}, doi = {10.1093/BIOINFORMATICS/BTZ671}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/Ramirez-Aportela20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcisd/MartinezJMRMCCC20, author = {Marta Mart{\'{\i}}nez and A. Jim{\'{e}}nez{-}Moreno and David Maluenda and Erney Ram{\'{\i}}rez{-}Aportela and Roberto Melero and Ana Cuervo and Pablo Conesa and Laura del Cano and Y. C. Fonseca and Rub{\'{e}}n S{\'{a}}nchez Garc{\'{\i}}a and David Strel{\'{a}}k and J. J. Conesa and E. Fern{\'{a}}ndez{-}Gim{\'{e}}nez and F. de Isidro and Carlos Oscar S{\'{a}}nchez Sorzano and Jos{\'{e}} Mar{\'{\i}}a Carazo and Roberto Marabini}, title = {Integration of Cryo-EM Model Building Software in Scipion}, journal = {J. Chem. Inf. Model.}, volume = {60}, number = {5}, pages = {2533--2540}, year = {2020}, url = {https://doi.org/10.1021/acs.jcim.9b01032}, doi = {10.1021/ACS.JCIM.9B01032}, timestamp = {Sun, 29 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcisd/MartinezJMRMCCC20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/GarciaSCS19, author = {Rub{\'{e}}n S{\'{a}}nchez Garc{\'{\i}}a and Carlos Oscar S{\'{a}}nchez Sorzano and Jos{\'{e}} Mar{\'{\i}}a Carazo and Joan Segura}, title = {{BIPSPI:} a method for the prediction of partner-specific protein-protein interfaces}, journal = {Bioinform.}, volume = {35}, number = {3}, pages = {470--477}, year = {2019}, url = {https://doi.org/10.1093/bioinformatics/bty647}, doi = {10.1093/BIOINFORMATICS/BTY647}, timestamp = {Sat, 30 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/GarciaSCS19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/JimenezJMOVMMRM19, author = {Amaya Jim{\'{e}}nez and Slavica Jonic and Tom{\'{a}}s Majtner and Joaqu{\'{\i}}n Ot{\'{o}}n and Jose Luis Vilas and David Maluenda and Javier Mota and Erney Ram{\'{\i}}rez{-}Aportela and Marta Mart{\'{\i}}nez and Yaiza Rancel and Joan Segura and Rub{\'{e}}n S{\'{a}}nchez Garc{\'{\i}}a and Roberto Melero and Laura del Cano and Pablo Conesa and Lars Skjaerven and Roberto Marabini and Jos{\'{e}} Mar{\'{\i}}a Carazo and Carlos Oscar S{\'{a}}nchez Sorzano}, title = {Validation of electron microscopy initial models via small angle X-ray scattering curves}, journal = {Bioinform.}, volume = {35}, number = {14}, pages = {2427--2433}, year = {2019}, url = {https://doi.org/10.1093/bioinformatics/bty985}, doi = {10.1093/BIOINFORMATICS/BTY985}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/JimenezJMOVMMRM19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SeguraGSC19, author = {Joan Segura and Rub{\'{e}}n S{\'{a}}nchez Garc{\'{\i}}a and Carlos Oscar S{\'{a}}nchez Sorzano and Jos{\'{e}} Mar{\'{\i}}a Carazo}, title = {3DBIONOTES v3.0: crossing molecular and structural biology data with genomic variations}, journal = {Bioinform.}, volume = {35}, number = {18}, pages = {3512--3513}, year = {2019}, url = {https://doi.org/10.1093/bioinformatics/btz118}, doi = {10.1093/BIOINFORMATICS/BTZ118}, timestamp = {Sat, 30 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/SeguraGSC19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijhpca/StrelakSCF19, author = {David Strel{\'{a}}k and Carlos Oscar S{\'{a}}nchez Sorzano and Jos{\'{e}} Mar{\'{\i}}a Carazo and Jiri Filipovic}, title = {A {GPU} acceleration of 3-D Fourier reconstruction in cryo-EM}, journal = {Int. J. High Perform. Comput. Appl.}, volume = {33}, number = {5}, year = {2019}, url = {https://doi.org/10.1177/1094342019832958}, doi = {10.1177/1094342019832958}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ijhpca/StrelakSCF19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SeguraGMATSC17, author = {Joan Segura and Rub{\'{e}}n S{\'{a}}nchez Garc{\'{\i}}a and Marta Mart{\'{\i}}nez and Jes{\'{u}}s Cuenca Alba and Daniel Tabas{-}Madrid and Carlos Oscar S{\'{a}}nchez Sorzano and Jos{\'{e}} Mar{\'{\i}}a Carazo}, title = {3DBIONOTES v2.0: a web server for the automatic annotation of macromolecular structures}, journal = {Bioinform.}, volume = {33}, number = {22}, pages = {3655--3657}, year = {2017}, url = {https://doi.org/10.1093/bioinformatics/btx483}, doi = {10.1093/BIOINFORMATICS/BTX483}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/SeguraGMATSC17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/SorzanoC17, author = {Carlos Oscar S{\'{a}}nchez Sorzano and Jos{\'{e}} Mar{\'{\i}}a Carazo}, title = {Challenges ahead Electron Microscopy for Structural Biology from the Image Processing point of view}, journal = {CoRR}, volume = {abs/1701.00326}, year = {2017}, url = {http://arxiv.org/abs/1701.00326}, eprinttype = {arXiv}, eprint = {1701.00326}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/SorzanoC17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SeguraSAAC15, author = {Joan Segura and Carlos Oscar S{\'{a}}nchez Sorzano and Jes{\'{u}}s Cuenca Alba and Patrick Aloy and Jos{\'{e}} Mar{\'{\i}}a Carazo}, title = {Using neighborhood cohesiveness to infer interactions between protein domains}, journal = {Bioinform.}, volume = {31}, number = {15}, pages = {2545--2552}, year = {2015}, url = {https://doi.org/10.1093/bioinformatics/btv188}, doi = {10.1093/BIOINFORMATICS/BTV188}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/SeguraSAAC15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/VargasAMCS14, author = {Javier Vargas and Ana{-}Lucia {\'{A}}lvarez{-}Cabrera and Roberto Marabini and Jos{\'{e}} Mar{\'{\i}}a Carazo and Carlos Oscar S{\'{a}}nchez Sorzano}, title = {Efficient initial volume determination from electron microscopy images of single particles}, journal = {Bioinform.}, volume = {30}, number = {20}, pages = {2891--2898}, year = {2014}, url = {https://doi.org/10.1093/bioinformatics/btu404}, doi = {10.1093/BIOINFORMATICS/BTU404}, timestamp = {Tue, 22 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/VargasAMCS14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icip/SorzanoVOARRFMM14, author = {Carlos Oscar S{\'{a}}nchez Sorzano and Javier Vargas and Joaqu{\'{\i}}n Ot{\'{o}}n and Vahid Abrishami and Jos{\'{e}} Miguel de la Rosa{-}Trev{\'{\i}}n and S. del Riego and A. Fernandez{-}Alderete and C. Martinez{-}Rey and Roberto Marabini and Jos{\'{e}} Mar{\'{\i}}a Carazo}, title = {An image processing approach to the simulation of electron microscopy volumes of atomic structures}, booktitle = {2014 {IEEE} International Conference on Image Processing, {ICIP} 2014, Paris, France, October 27-30, 2014}, pages = {2095--2099}, publisher = {{IEEE}}, year = {2014}, url = {https://doi.org/10.1109/ICIP.2014.7025420}, doi = {10.1109/ICIP.2014.7025420}, timestamp = {Tue, 22 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/icip/SorzanoVOARRFMM14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iwbbio/SorzanoVRZOAFMC14, author = {Carlos Oscar S{\'{a}}nchez Sorzano and Javier Vargas and Jos{\'{e}} Miguel de la Rosa{-}Trev{\'{\i}}n and Airen Zald{\'{\i}}var{-}Peraza and Joaqu{\'{\i}}n Ot{\'{o}}n and Vahid Abrishami and Ignacio Foche and Roberto Marabini and Gabriel Caffarena and Jos{\'{e}} Mar{\'{\i}}a Carazo}, editor = {Ignacio Rojas and Francisco M. Ortu{\~{n}}o Guzman}, title = {Outlier detection for single particle analysis in Electron Microscopy}, booktitle = {International Work-Conference on Bioinformatics and Biomedical Engineering, {IWBBIO} 2014, Granada, Spain, April 7-9, 2014}, pages = {950--959}, publisher = {Copicentro Editorial}, year = {2014}, url = {http://iwbbio.ugr.es/2014/papers/IWBBIO\_2014\_paper\_99.pdf}, timestamp = {Tue, 22 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/iwbbio/SorzanoVRZOAFMC14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/AbrishamiZRVOMSCS13, author = {Vahid Abrishami and Airen Zald{\'{\i}}var{-}Peraza and Jos{\'{e}} Miguel de la Rosa{-}Trev{\'{\i}}n and Javier Vargas and Joaqu{\'{\i}}n Ot{\'{o}}n and Roberto Marabini and Yoel Shkolnisky and Jos{\'{e}} Mar{\'{\i}}a Carazo and Carlos Oscar S{\'{a}}nchez Sorzano}, title = {A pattern matching approach to the automatic selection of particles from low-contrast electron micrographs}, journal = {Bioinform.}, volume = {29}, number = {19}, pages = {2460--2468}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt429}, doi = {10.1093/BIOINFORMATICS/BTT429}, timestamp = {Tue, 22 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/AbrishamiZRVOMSCS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/Jimenez-LozanoSMVC12, author = {Natalia Jim{\'{e}}nez{-}Lozano and Joan Segura and Jos{\'{e}} Ram{\'{o}}n Mac{\'{\i}}as and Juanjo Vega and Jos{\'{e}} Mar{\'{\i}}a Carazo}, title = {Integrating human and murine anatomical gene expression data for improved comparisons}, journal = {Bioinform.}, volume = {28}, number = {3}, pages = {397--402}, year = {2012}, url = {https://doi.org/10.1093/bioinformatics/btr639}, doi = {10.1093/BIOINFORMATICS/BTR639}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/Jimenez-LozanoSMVC12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbi/SorzanoOAZCSMMMC12, author = {Carlos Oscar S{\'{a}}nchez Sorzano and Joaqu{\'{\i}}n Ot{\'{o}}n and Jes{\'{u}}s Cuenca Alba and Airen Zald{\'{\i}}var{-}Perez and Gabriel Caffarena and Javier Sanchez{-}Jimenez and C{\'{e}}dric Messaoudi and Sergio Marco and Roberto Marabini and Jos{\'{e}} Mar{\'{\i}}a Carazo}, title = {Image processing for Cellular tomography using soft X-rays}, booktitle = {9th {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro, {ISBI} 2012, May 2-5, 2012, Barcelona, Spain, Proceedings}, pages = {1322}, publisher = {{IEEE}}, year = {2012}, url = {https://doi.org/10.1109/ISBI.2012.6235808}, doi = {10.1109/ISBI.2012.6235808}, timestamp = {Sun, 25 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/isbi/SorzanoOAZCSMMMC12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/NevesCP10, author = {Mariana L. Neves and Jos{\'{e}} Mar{\'{\i}}a Carazo and Alberto D. Pascual{-}Montano}, title = {Moara: a Java library for extracting and normalizing gene and protein mentions}, journal = {{BMC} Bioinform.}, volume = {11}, pages = {157}, year = {2010}, url = {https://doi.org/10.1186/1471-2105-11-157}, doi = {10.1186/1471-2105-11-157}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/NevesCP10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/VazquezNABGCTPC10, author = {Miguel V{\'{a}}zquez and Rub{\'{e}}n Nogales{-}Cadenas and Javier Arroyo and Pedro Bot{\'{\i}}as and Raul Garc{\'{\i}}a and Jos{\'{e}} Mar{\'{\i}}a Carazo and Francisco Tirado and Alberto D. Pascual{-}Montano and Pedro Carmona{-}Saez}, title = {{MARQ:} an online tool to mine {GEO} for experiments with similar or opposite gene expression signatures}, journal = {Nucleic Acids Res.}, volume = {38}, number = {Web-Server-Issue}, pages = {228--232}, year = {2010}, url = {https://doi.org/10.1093/nar/gkq476}, doi = {10.1093/NAR/GKQ476}, timestamp = {Sun, 17 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/VazquezNABGCTPC10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/Jimenez-LozanoSMVC09, author = {Natalia Jim{\'{e}}nez{-}Lozano and Joan Segura and Jos{\'{e}} Ram{\'{o}}n Mac{\'{\i}}as and Juanjo Vega and Jos{\'{e}} Mar{\'{\i}}a Carazo}, title = {aGEM: an integrative system for analyzing spatial-temporal gene-expression information}, journal = {Bioinform.}, volume = {25}, number = {19}, pages = {2566--2572}, year = {2009}, url = {https://doi.org/10.1093/bioinformatics/btp422}, doi = {10.1093/BIOINFORMATICS/BTP422}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/Jimenez-LozanoSMVC09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SorzanoMEBHNMC09, author = {Carlos Oscar S{\'{a}}nchez Sorzano and C{\'{e}}dric Messaoudi and Matthias Eibauer and Jose{-}Roman Bilbao{-}Castro and Reiner Hegerl and S. Nickell and Sergio Marco and Jos{\'{e}} Mar{\'{\i}}a Carazo}, title = {Marker-free image registration of electron tomography tilt-series}, journal = {{BMC} Bioinform.}, volume = {10}, year = {2009}, url = {https://doi.org/10.1186/1471-2105-10-124}, doi = {10.1186/1471-2105-10-124}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SorzanoMEBHNMC09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/Nogales-CadenasADCP09, author = {Rub{\'{e}}n Nogales{-}Cadenas and Federico Abascal and Javier D{\'{\i}}ez{-}P{\'{e}}rez and Jos{\'{e}} Mar{\'{\i}}a Carazo and Alberto D. Pascual{-}Montano}, title = {CentrosomeDB: a human centrosomal proteins database}, journal = {Nucleic Acids Res.}, volume = {37}, number = {Database-Issue}, pages = {175--180}, year = {2009}, url = {https://doi.org/10.1093/nar/gkn815}, doi = {10.1093/NAR/GKN815}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/Nogales-CadenasADCP09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/VazquezCNCTCP09, author = {Miguel V{\'{a}}zquez and Pedro Carmona{-}Saez and Rub{\'{e}}n Nogales{-}Cadenas and Monica Chagoyen and Francisco Tirado and Jos{\'{e}} Mar{\'{\i}}a Carazo and Alberto D. Pascual{-}Montano}, title = {{SENT:} semantic features in text}, journal = {Nucleic Acids Res.}, volume = {37}, number = {Web-Server-Issue}, pages = {153--159}, year = {2009}, url = {https://doi.org/10.1093/nar/gkp392}, doi = {10.1093/NAR/GKP392}, timestamp = {Sun, 17 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/VazquezCNCTCP09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/Nogales-CadenasCVVYTCP09, author = {Rub{\'{e}}n Nogales{-}Cadenas and Pedro Carmona{-}Saez and Miguel V{\'{a}}zquez and Cesar Vicente and Xiaoyuan Yang and Francisco Tirado and Jos{\'{e}} Mar{\'{\i}}a Carazo and Alberto D. Pascual{-}Montano}, title = {GeneCodis: interpreting gene lists through enrichment analysis and integration of diverse biological information}, journal = {Nucleic Acids Res.}, volume = {37}, number = {Web-Server-Issue}, pages = {317--322}, year = {2009}, url = {https://doi.org/10.1093/nar/gkp416}, doi = {10.1093/NAR/GKP416}, timestamp = {Sun, 17 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/Nogales-CadenasCVVYTCP09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bionlp/NevesCP09, author = {Mariana L. Neves and Jos{\'{e}} Mar{\'{\i}}a Carazo and Alberto D. Pascual{-}Montano}, title = {Extraction of biomedical events using case-based reasoning}, booktitle = {Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task, BioNLP@HLT-NAACL 2009 - Shared Task, Boulder, Colorado, USA, June 5, 2009}, pages = {68--76}, publisher = {Association for Computational Linguistics}, year = {2009}, url = {https://aclanthology.org/W09-1409/}, timestamp = {Fri, 06 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/bionlp/NevesCP09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/AbascalCCP08, author = {Federico Abascal and Pedro Carmona{-}Saez and Jos{\'{e}} Mar{\'{\i}}a Carazo and Alberto D. Pascual{-}Montano}, title = {ChIPCodis: mining complex regulatory systems in yeast by concurrent enrichment analysis of chip-on-chip data}, journal = {Bioinform.}, volume = {24}, number = {9}, pages = {1208--1209}, year = {2008}, url = {https://doi.org/10.1093/bioinformatics/btn094}, doi = {10.1093/BIOINFORMATICS/BTN094}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/AbascalCCP08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ChagoyenCP08, author = {Monica Chagoyen and Jos{\'{e}} Mar{\'{\i}}a Carazo and Alberto D. Pascual{-}Montano}, title = {Assessment of protein set coherence using functional annotations}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-444}, doi = {10.1186/1471-2105-9-444}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ChagoyenCP08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijspm/CortesMOC08, author = {Pablo Cort{\'{e}}s and Jes{\'{u}}s Mu{\~{n}}uzuri and Luis Onieva and Jos{\'{e}} Mar{\'{\i}}a Carazo}, title = {Design and analysis of an object-oriented discrete-event simulation engine for {ATM} telecommunication networks}, journal = {Int. J. Simul. Process. Model.}, volume = {4}, number = {1}, pages = {43--53}, year = {2008}, url = {https://doi.org/10.1504/IJSPM.2008.020612}, doi = {10.1504/IJSPM.2008.020612}, timestamp = {Tue, 27 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ijspm/CortesMOC08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/pr/SorzanoVMHC08, author = {Carlos Oscar S{\'{a}}nchez Sorzano and Javier A. Vel{\'{a}}zquez{-}Muriel and Roberto Marabini and Gabor T. Herman and Jos{\'{e}} Mar{\'{\i}}a Carazo}, title = {Volumetric restrictions in single particle 3DEM reconstruction}, journal = {Pattern Recognit.}, volume = {41}, number = {2}, pages = {616--626}, year = {2008}, url = {https://doi.org/10.1016/j.patcog.2007.06.010}, doi = {10.1016/J.PATCOG.2007.06.010}, timestamp = {Mon, 24 Feb 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/pr/SorzanoVMHC08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bionlp/NevesCCP08, author = {Mariana L. Neves and Monica Chagoyen and Jos{\'{e}} Mar{\'{\i}}a Carazo and Alberto D. Pascual{-}Montano}, editor = {Dina Demner{-}Fushman and Sophia Ananiadou and Kevin Bretonnel Cohen and John Pestian and Jun'ichi Tsujii and Bonnie L. Webber}, title = {CBR-Tagger: a case-based reasoning approach to the gene/protein mention problem}, booktitle = {Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing, BioNLP 2008, Columbus, Ohio, USA, June 19, 2008}, pages = {108--109}, publisher = {Association for Computational Linguistics}, year = {2008}, url = {https://aclanthology.org/W08-0622/}, timestamp = {Fri, 06 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/bionlp/NevesCCP08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbi/Fernandez-de-ManuelLASCS08, author = {Laura Fernandez{-}de{-}Manuel and Mar{\'{\i}}a J. Ledesma{-}Carbayo and Julian Atienza{-}Herrero and Carlos Oscar S{\'{a}}nchez Sorzano and Jos{\'{e}} Mar{\'{\i}}a Carazo and Andr{\'{e}}s Santos}, title = {Flexible image registration for the identification of best fitted protein models in 3D-EM maps}, booktitle = {Proceedings of the 2008 {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro, Paris, France, May 14-17, 2008}, pages = {983--986}, publisher = {{IEEE}}, year = {2008}, url = {https://doi.org/10.1109/ISBI.2008.4541163}, doi = {10.1109/ISBI.2008.4541163}, timestamp = {Wed, 04 Oct 2023 17:01:25 +0200}, biburl = {https://dblp.org/rec/conf/isbi/Fernandez-de-ManuelLASCS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ismb/NevesCP08, author = {Mariana L. Neves and Jos{\'{e}} Mar{\'{\i}}a Carazo and Alberto D. Pascual{-}Montano}, editor = {Christian Blaschke and Hagit Shatkay}, title = {Extracting and Normalizing Gene/Protein Mentions with the Flexible and Trainable Moara Java Library}, booktitle = {Linking Literature, Information, and Knowledge for Biology - Workshop of the BioLink Special Interest Group, {ISMB/ECCB} 2009, Stockholm, Sweden, June 28-29, 2009, Revised Selected Papers}, series = {Lecture Notes in Computer Science}, volume = {6004}, pages = {71--80}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-642-13131-8\_9}, doi = {10.1007/978-3-642-13131-8\_9}, timestamp = {Tue, 14 May 2019 10:00:52 +0200}, biburl = {https://dblp.org/rec/conf/ismb/NevesCP08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/fgcs/FernandezGCM07, author = {Jos{\'{e}}{-}Jes{\'{u}}s Fern{\'{a}}ndez and Inmaculada Garc{\'{\i}}a and Jos{\'{e}} Mar{\'{\i}}a Carazo and Roberto Marabini}, title = {Electron tomography of complex biological specimens on the Grid}, journal = {Future Gener. Comput. Syst.}, volume = {23}, number = {3}, pages = {435--446}, year = {2007}, url = {https://doi.org/10.1016/j.future.2006.07.010}, doi = {10.1016/J.FUTURE.2006.07.010}, timestamp = {Wed, 19 Feb 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/fgcs/FernandezGCM07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/pc/Bilbao-CastroMGCF07, author = {Jose{-}Roman Bilbao{-}Castro and A. Merino and Inmaculada Garc{\'{\i}}a and Jos{\'{e}} Mar{\'{\i}}a Carazo and Jos{\'{e}}{-}Jes{\'{u}}s Fern{\'{a}}ndez}, title = {Parameter optimization in 3D reconstruction on a large scale grid}, journal = {Parallel Comput.}, volume = {33}, number = {4-5}, pages = {250--263}, year = {2007}, url = {https://doi.org/10.1016/j.parco.2007.02.002}, doi = {10.1016/J.PARCO.2007.02.002}, timestamp = {Sat, 22 Feb 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/pc/Bilbao-CastroMGCF07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/anor/SorzanoMPSC06, author = {Carlos Oscar S{\'{a}}nchez Sorzano and Roberto Marabini and Alberto D. Pascual{-}Montano and Sjors H. W. Scheres and Jos{\'{e}} Mar{\'{\i}}a Carazo}, title = {Optimization problems in electron microscopy of single particles}, journal = {Ann. Oper. Res.}, volume = {148}, number = {1}, pages = {133--165}, year = {2006}, url = {https://doi.org/10.1007/s10479-006-0078-8}, doi = {10.1007/S10479-006-0078-8}, timestamp = {Thu, 13 Aug 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/anor/SorzanoMPSC06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ChagoyenCSCP06, author = {Monica Chagoyen and Pedro Carmona{-}Saez and Hagit Shatkay and Jos{\'{e}} Mar{\'{\i}}a Carazo and Alberto D. Pascual{-}Montano}, title = {Discovering semantic features in the literature: a foundation for building functional associations}, journal = {{BMC} Bioinform.}, volume = {7}, pages = {41}, year = {2006}, url = {https://doi.org/10.1186/1471-2105-7-41}, doi = {10.1186/1471-2105-7-41}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ChagoyenCSCP06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/Carmona-SaezCRTCP06, author = {Pedro Carmona{-}Saez and Monica Chagoyen and Andr{\'{e}}s Rodr{\'{\i}}guez Moreno and Oswaldo Trelles and Jos{\'{e}} Mar{\'{\i}}a Carazo and Alberto D. Pascual{-}Montano}, title = {Integrated analysis of gene expression by association rules discovery}, journal = {{BMC} Bioinform.}, volume = {7}, pages = {54}, year = {2006}, url = {https://doi.org/10.1186/1471-2105-7-54}, doi = {10.1186/1471-2105-7-54}, timestamp = {Fri, 27 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/Carmona-SaezCRTCP06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/Carmona-SaezPTCP06, author = {Pedro Carmona{-}Saez and Roberto D. Pascual{-}Marqui and Francisco Tirado and Jos{\'{e}} Mar{\'{\i}}a Carazo and Alberto D. Pascual{-}Montano}, title = {Biclustering of gene expression data by non-smooth non-negative matrix factorization}, journal = {{BMC} Bioinform.}, volume = {7}, pages = {78}, year = {2006}, url = {https://doi.org/10.1186/1471-2105-7-78}, doi = {10.1186/1471-2105-7-78}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/Carmona-SaezPTCP06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ChagoyenCGCP06, author = {Monica Chagoyen and Pedro Carmona{-}Saez and Concha Gil and Jos{\'{e}} Mar{\'{\i}}a Carazo and Alberto D. Pascual{-}Montano}, title = {A literature-based similarity metric for biological processes}, journal = {{BMC} Bioinform.}, volume = {7}, pages = {363}, year = {2006}, url = {https://doi.org/10.1186/1471-2105-7-363}, doi = {10.1186/1471-2105-7-363}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ChagoyenCGCP06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/Pascual-MontanoCCTCP06, author = {Alberto D. Pascual{-}Montano and Pedro Carmona{-}Saez and Monica Chagoyen and Francisco Tirado and Jos{\'{e}} Mar{\'{\i}}a Carazo and Roberto D. Pascual{-}Marqui}, title = {bioNMF: a versatile tool for non-negative matrix factorization in biology}, journal = {{BMC} Bioinform.}, volume = {7}, pages = {366}, year = {2006}, url = {https://doi.org/10.1186/1471-2105-7-366}, doi = {10.1186/1471-2105-7-366}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/Pascual-MontanoCCTCP06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/pami/Pascual-MontanoCKLP06, author = {Alberto D. Pascual{-}Montano and Jos{\'{e}} Mar{\'{\i}}a Carazo and Kieko Kochi and Dietrich Lehmann and Roberto D. Pascual{-}Marqui}, title = {Nonsmooth Nonnegative Matrix Factorization (nsNMF)}, journal = {{IEEE} Trans. Pattern Anal. Mach. Intell.}, volume = {28}, number = {3}, pages = {403--415}, year = {2006}, url = {https://doi.org/10.1109/TPAMI.2006.60}, doi = {10.1109/TPAMI.2006.60}, timestamp = {Sat, 19 Oct 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/pami/Pascual-MontanoCKLP06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/spm/FernandezSMC06, author = {Jos{\'{e}}{-}Jes{\'{u}}s Fern{\'{a}}ndez and Carlos Oscar S{\'{a}}nchez Sorzano and Roberto Marabini and Jos{\'{e}} Mar{\'{\i}}a Carazo}, title = {Image processing and 3-D reconstruction in electron microscopy}, journal = {{IEEE} Signal Process. Mag.}, volume = {23}, number = {3}, pages = {84--94}, year = {2006}, url = {https://doi.org/10.1109/MSP.2006.1628881}, doi = {10.1109/MSP.2006.1628881}, timestamp = {Tue, 01 Jun 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/spm/FernandezSMC06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/eccv/Arganda-CarrerasSMCOK06, author = {Ignacio Arganda{-}Carreras and Carlos Oscar S{\'{a}}nchez Sorzano and Roberto Marabini and Jos{\'{e}} Mar{\'{\i}}a Carazo and Carlos Ortiz{-}de{-}Solorzano and Jan Kybic}, editor = {Reinhard Beichel and Milan Sonka}, title = {Consistent and Elastic Registration of Histological Sections Using Vector-Spline Regularization}, booktitle = {Computer Vision Approaches to Medical Image Analysis, Second International {ECCV} Workshop, {CVAMIA} 2006, Graz, Austria, May 12, 2006 Revised Papers}, series = {Lecture Notes in Computer Science}, volume = {4241}, pages = {85--95}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11889762\_8}, doi = {10.1007/11889762\_8}, timestamp = {Tue, 14 May 2019 10:00:45 +0200}, biburl = {https://dblp.org/rec/conf/eccv/Arganda-CarrerasSMCOK06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbi/TelenczukLVSCS06, author = {Bartosz Telenczuk and Mar{\'{\i}}a J. Ledesma{-}Carbayo and Javier A. Vel{\'{a}}zquez{-}Muriel and Carlos Oscar S{\'{a}}nchez Sorzano and Jos{\'{e}} Mar{\'{\i}}a Carazo and Andr{\'{e}}s Santos}, title = {Molecular image registration using mutual information and differential evolution optimization}, booktitle = {Proceedings of the 2006 {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro, Arlington, VA, USA, 6-9 April 2006}, pages = {844--847}, publisher = {{IEEE}}, year = {2006}, url = {https://doi.org/10.1109/ISBI.2006.1625050}, doi = {10.1109/ISBI.2006.1625050}, timestamp = {Wed, 04 Oct 2023 17:01:25 +0200}, biburl = {https://dblp.org/rec/conf/isbi/TelenczukLVSCS06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jasis/RodriguezCT05, author = {Andr{\'{e}}s Rodr{\'{\i}}guez Moreno and Jos{\'{e}} Mar{\'{\i}}a Carazo and Oswaldo Trelles{-}Salazar}, title = {Mining association rules from biological databases}, journal = {J. Assoc. Inf. Sci. Technol.}, volume = {56}, number = {5}, pages = {493--504}, year = {2005}, url = {https://doi.org/10.1002/asi.20138}, doi = {10.1002/ASI.20138}, timestamp = {Fri, 27 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jasis/RodriguezCT05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/pr/SorzanoMHC05, author = {Carlos Oscar S{\'{a}}nchez Sorzano and Roberto Marabini and Gabor T. Herman and Jos{\'{e}} Mar{\'{\i}}a Carazo}, title = {Multiobjective algorithm parameter optimization using multivariate statistics in three-dimensional electron microscopy reconstruction}, journal = {Pattern Recognit.}, volume = {38}, number = {12}, pages = {2587--2601}, year = {2005}, url = {https://doi.org/10.1016/j.patcog.2005.03.013}, doi = {10.1016/J.PATCOG.2005.03.013}, timestamp = {Mon, 24 Feb 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/pr/SorzanoMHC05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cbms/ScheresMSC05, author = {Sjors H. W. Scheres and A. J. Merino and Carlos Oscar S{\'{a}}nchez Sorzano and Jos{\'{e}} Mar{\'{\i}}a Carazo}, title = {Grid Computing in 3D-EM Image Processing Using Xmipp}, booktitle = {18th {IEEE} Symposium on Computer-Based Medical Systems {(CBMS} 2005), 23-24 June 2005, Dublin, Ireland}, pages = {561--563}, publisher = {{IEEE} Computer Society}, year = {2005}, url = {https://doi.org/10.1109/CBMS.2005.60}, doi = {10.1109/CBMS.2005.60}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cbms/ScheresMSC05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/csb/Pascual-MontanoTCCP05, author = {Alberto D. Pascual{-}Montano and Francisco Tirado and Pedro Carmona{-}Saez and Jos{\'{e}} Mar{\'{\i}}a Carazo and Roberto D. Pascual{-}Marqui}, title = {Two-way clustering of gene expression profiles by sparse matrix factorization}, booktitle = {Fourth International {IEEE} Computer Society Computational Systems Bioinformatics Conference Workshops {\&} Poster Abstracts, {CSB} 2005 Workshops, Stanford, CA, USA, August 8-11, 2005}, pages = {103--104}, publisher = {{IEEE} Computer Society}, year = {2005}, url = {https://doi.org/10.1109/CSBW.2005.137}, doi = {10.1109/CSBW.2005.137}, timestamp = {Thu, 23 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/csb/Pascual-MontanoTCCP05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/csb/Velazquez-MurielC05, author = {Javier A. Vel{\'{a}}zquez{-}Muriel and Jos{\'{e}} Mar{\'{\i}}a Carazo}, title = {Extending the incorporation of superfamily structural information in the process of flexible fitting in 3D-EM}, booktitle = {Fourth International {IEEE} Computer Society Computational Systems Bioinformatics Conference Workshops {\&} Poster Abstracts, {CSB} 2005 Workshops, Stanford, CA, USA, August 8-11, 2005}, pages = {209--210}, publisher = {{IEEE} Computer Society}, year = {2005}, url = {https://doi.org/10.1109/CSBW.2005.65}, doi = {10.1109/CSBW.2005.65}, timestamp = {Thu, 23 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/csb/Velazquez-MurielC05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/eccb/ScheresVC05, author = {Sjors H. W. Scheres and Mikel Valle and Jos{\'{e}} Mar{\'{\i}}a Carazo}, title = {Fast maximum-likelihood refinement of electron microscopy images}, booktitle = {ECCB/JBI'05 Proceedings, Fourth European Conference on Computational Biology/Sixth Meeting of the Spanish Bioinformatics Network (Jornadas de BioInform{\'{a}}tica), Palacio de Congresos, Madrid, Spain, September 28 - October 1, 2005}, pages = {244}, year = {2005}, url = {https://doi.org/10.1093/bioinformatics/bti1140}, doi = {10.1093/BIOINFORMATICS/BTI1140}, timestamp = {Sun, 25 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/eccb/ScheresVC05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ChagoyenKACG04, author = {Monica Chagoyen and M. Erdem Kurul and Pedro A. de Alarc{\'{o}}n and Jos{\'{e}} Mar{\'{\i}}a Carazo and Amarnath Gupta}, title = {Designing and executing scientific workflows with a programmable integrator}, journal = {Bioinform.}, volume = {20}, number = {13}, pages = {2092--2100}, year = {2004}, url = {https://doi.org/10.1093/bioinformatics/bth209}, doi = {10.1093/BIOINFORMATICS/BTH209}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ChagoyenKACG04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jpdc/FernandezCG04, author = {Jos{\'{e}}{-}Jes{\'{u}}s Fern{\'{a}}ndez and Jos{\'{e}} Mar{\'{\i}}a Carazo and Inmaculada Garc{\'{\i}}a}, title = {Three-dimensional reconstruction of cellular structures by electron microscope tomography and parallel computing}, journal = {J. Parallel Distributed Comput.}, volume = {64}, number = {2}, pages = {285--300}, year = {2004}, url = {https://doi.org/10.1016/j.jpdc.2003.06.005}, doi = {10.1016/J.JPDC.2003.06.005}, timestamp = {Sat, 22 Feb 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jpdc/FernandezCG04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ngc/FernandezBMCG04, author = {Jos{\'{e}}{-}Jes{\'{u}}s Fern{\'{a}}ndez and Jose{-}Roman Bilbao{-}Castro and Roberto Marabini and Jos{\'{e}} Mar{\'{\i}}a Carazo and Inmaculada Garc{\'{\i}}a}, title = {Biological Structure Determination by {EM} is Well Suited to Grid Computing}, journal = {New Gener. Comput.}, volume = {22}, number = {2}, pages = {187--188}, year = {2004}, url = {https://doi.org/10.1007/BF03040957}, doi = {10.1007/BF03040957}, timestamp = {Thu, 14 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ngc/FernandezBMCG04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ngc/FernandezBMCG04a, author = {Jos{\'{e}}{-}Jes{\'{u}}s Fern{\'{a}}ndez and Jose{-}Roman Bilbao{-}Castro and Roberto Marabini and Jos{\'{e}} Mar{\'{\i}}a Carazo and Inmaculada Garc{\'{\i}}a}, title = {On the Suitability of Biological Structure Determination by Electron Microscopy to Grid Computing}, journal = {New Gener. Comput.}, volume = {23}, number = {1}, pages = {101--112}, year = {2004}, url = {https://doi.org/10.1007/BF03037653}, doi = {10.1007/BF03037653}, timestamp = {Thu, 14 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ngc/FernandezBMCG04a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ppl/Bilbao-CastroMCGF04, author = {Jose{-}Roman Bilbao{-}Castro and Roberto Marabini and Jos{\'{e}} Mar{\'{\i}}a Carazo and Inmaculada Garc{\'{\i}}a and Jos{\'{e}}{-}Jes{\'{u}}s Fern{\'{a}}ndez}, title = {The Potential Of Grid Computing In Three-Dimensional Electron Microscopy}, journal = {Parallel Process. Lett.}, volume = {14}, number = {2}, pages = {151--162}, year = {2004}, url = {https://doi.org/10.1142/S0129626404001805}, doi = {10.1142/S0129626404001805}, timestamp = {Tue, 24 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ppl/Bilbao-CastroMCGF04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tip/MarabiniSMFCH04, author = {Roberto Marabini and Carlos Oscar S{\'{a}}nchez Sorzano and Samuel Matej and Jos{\'{e}}{-}Jes{\'{u}}s Fern{\'{a}}ndez and Jos{\'{e}} Mar{\'{\i}}a Carazo and Gabor T. Herman}, title = {3-D reconstruction of 2-D crystals in real space}, journal = {{IEEE} Trans. Image Process.}, volume = {13}, number = {4}, pages = {549--561}, year = {2004}, url = {https://doi.org/10.1109/TIP.2003.822620}, doi = {10.1109/TIP.2003.822620}, timestamp = {Sun, 10 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tip/MarabiniSMFCH04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/pdp/Bilbao-CastroCFG04, author = {Jose{-}Roman Bilbao{-}Castro and Jos{\'{e}} Mar{\'{\i}}a Carazo and Jos{\'{e}}{-}Jes{\'{u}}s Fern{\'{a}}ndez and Inmaculada Garc{\'{\i}}a}, title = {Parallelization and Comparison of 3D Iterative Reconstruction Algorithms}, booktitle = {12th Euromicro Workshop on Parallel, Distributed and Network-Based Processing {(PDP} 2004), 11-13 February 2004, {A} Coruna, Spain}, pages = {96--102}, publisher = {{IEEE} Computer Society}, year = {2004}, url = {https://doi.org/10.1109/EMPDP.2004.1271433}, doi = {10.1109/EMPDP.2004.1271433}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/pdp/Bilbao-CastroCFG04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/NavaSACTP03, author = {Jorge Garc{\'{\i}}a de la Nava and Daniel Franco Santaella and Jes{\'{u}}s Cuenca Alba and Jos{\'{e}} Mar{\'{\i}}a Carazo and Oswaldo Trelles and Alberto D. Pascual{-}Montano}, title = {Engene: the processing and exploratory analysis of gene expression data}, journal = {Bioinform.}, volume = {19}, number = {5}, pages = {657--658}, year = {2003}, url = {https://doi.org/10.1093/bioinformatics/btg028}, doi = {10.1093/BIOINFORMATICS/BTG028}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/NavaSACTP03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/csb/ChagoyenKASLCG03, author = {Monica Chagoyen and M. Erdem Kurul and Pedro A. de Alarc{\'{o}}n and Simone Santini and Bertram Lud{\"{a}}scher and Jos{\'{e}} Mar{\'{\i}}a Carazo and Amarnath Gupta}, title = {A Semantic Mediation Approach for Problems in Computational Molecular Biology}, booktitle = {2nd {IEEE} Computer Society Bioinformatics Conference, {CSB} 2003, Stanford, CA, USA, August 11-14, 2003}, pages = {386--387}, publisher = {{IEEE} Computer Society}, year = {2003}, url = {https://doi.org/10.1109/CSB.2003.1227339}, doi = {10.1109/CSB.2003.1227339}, timestamp = {Thu, 23 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/csb/ChagoyenKASLCG03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/eagc/FernandezBMCG03, author = {Jos{\'{e}}{-}Jes{\'{u}}s Fern{\'{a}}ndez and Jose{-}Roman Bilbao{-}Castro and Roberto Marabini and Jos{\'{e}} Mar{\'{\i}}a Carazo and Inmaculada Garc{\'{\i}}a}, editor = {Francisco Fernandez Rivera and Marian Bubak and Andr{\'{e}}s G{\'{o}}mez{-}Tato and Ramon Doallo}, title = {Grid Computing in Structure Determination of Biological Specimens by Electron Microscope Tomography}, booktitle = {Grid Computing, First European Across Grids Conference, Santiago de Compostela, Spain, February 13-14, 2003, Revised Papers}, series = {Lecture Notes in Computer Science}, volume = {2970}, pages = {171--181}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/978-3-540-24689-3\_22}, doi = {10.1007/978-3-540-24689-3\_22}, timestamp = {Sun, 12 Nov 2023 02:12:58 +0100}, biburl = {https://dblp.org/rec/conf/eagc/FernandezBMCG03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icip/Bilbao-CastroCGF03, author = {Jose{-}Roman Bilbao{-}Castro and Jos{\'{e}} Mar{\'{\i}}a Carazo and Inmaculada Garc{\'{\i}}a and Jos{\'{e}}{-}Jes{\'{u}}s Fern{\'{a}}ndez}, title = {Parallel iterative reconstruction methods for structure determination of biological specimens by electron microscopy}, booktitle = {Proceedings of the 2003 International Conference on Image Processing, {ICIP} 2003, Barcelona, Catalonia, Spain, September 14-18, 2003}, pages = {565--568}, publisher = {{IEEE}}, year = {2003}, url = {https://doi.org/10.1109/ICIP.2003.1247024}, doi = {10.1109/ICIP.2003.1247024}, timestamp = {Wed, 16 Oct 2019 14:14:52 +0200}, biburl = {https://dblp.org/rec/conf/icip/Bilbao-CastroCGF03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/spe/SorzanoCT02, author = {Carlos Oscar S{\'{a}}nchez Sorzano and Jos{\'{e}} Mar{\'{\i}}a Carazo and Oswaldo Trelles}, title = {Command-line interfaces can be efficiently brought to graphics: {COLIMATE} (the COmmand LIne {MATE)}}, journal = {Softw. Pract. Exp.}, volume = {32}, number = {9}, pages = {873--887}, year = {2002}, url = {https://doi.org/10.1002/spe.465}, doi = {10.1002/SPE.465}, timestamp = {Thu, 09 Apr 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/spe/SorzanoCT02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/civr/AlarconPC02, author = {Pedro A. de Alarc{\'{o}}n and Alberto D. Pascual{-}Montano and Jos{\'{e}} Mar{\'{\i}}a Carazo}, editor = {Michael S. Lew and Nicu Sebe and John P. Eakins}, title = {Spin Images and Neural Networks for Efficient Content-Based Retrieval in 3D Object Databases}, booktitle = {Image and Video Retrieval, International Conference, {CIVR} 2002, London, UK, July 18-19, 2002, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2383}, pages = {225--234}, publisher = {Springer}, year = {2002}, url = {https://doi.org/10.1007/3-540-45479-9\_24}, doi = {10.1007/3-540-45479-9\_24}, timestamp = {Tue, 14 May 2019 10:00:44 +0200}, biburl = {https://dblp.org/rec/conf/civr/AlarconPC02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icpr/AlarconPGC02, author = {Pedro A. de Alarc{\'{o}}n and Alberto D. Pascual{-}Montano and Amarnath Gupta and Jos{\'{e}} Mar{\'{\i}}a Carazo}, title = {Modeling Shape and Topology of 3D Images of Biological Specimens}, booktitle = {16th International Conference on Pattern Recognition, {ICPR} 2002, Quebec, Canada, August 11-15, 2002}, pages = {79--82}, publisher = {{IEEE} Computer Society}, year = {2002}, url = {https://doi.org/10.1109/ICPR.2002.1044617}, doi = {10.1109/ICPR.2002.1044617}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/icpr/AlarconPGC02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbi/MarabiniHSC02, author = {Roberto Marabini and Gabor T. Herman and Carlos Oscar S{\'{a}}nchez Sorzano and Jos{\'{e}} Mar{\'{\i}}a Carazo}, title = {Volumetric constraints in 3D tomography applied to electron microscopy}, booktitle = {Proceedings of the 2002 {IEEE} International Symposium on Biomedical Imaging, Ritz-Carlton Hotel, Washington, DC, USA, 7-10 June 2002}, pages = {641--644}, publisher = {{IEEE}}, year = {2002}, url = {https://doi.org/10.1109/ISBI.2002.1029339}, doi = {10.1109/ISBI.2002.1029339}, timestamp = {Wed, 04 Oct 2023 17:01:25 +0200}, biburl = {https://dblp.org/rec/conf/isbi/MarabiniHSC02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbi/MarabiniHSCFM02, author = {Roberto Marabini and Gabor T. Herman and Carlos Oscar S{\'{a}}nchez Sorzano and Jos{\'{e}} Mar{\'{\i}}a Carazo and Jos{\'{e}}{-}Jes{\'{u}}s Fern{\'{a}}ndez and Samuel Matej}, title = {3D reconstruction of 2D crystals from projections in real space}, booktitle = {Proceedings of the 2002 {IEEE} International Symposium on Biomedical Imaging, Ritz-Carlton Hotel, Washington, DC, USA, 7-10 June 2002}, pages = {689--692}, publisher = {{IEEE}}, year = {2002}, url = {https://doi.org/10.1109/ISBI.2002.1029351}, doi = {10.1109/ISBI.2002.1029351}, timestamp = {Sun, 04 Jun 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/isbi/MarabiniHSCFM02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/vecpar/FernandezLRGEC02, author = {Jos{\'{e}}{-}Jes{\'{u}}s Fern{\'{a}}ndez and Albert F. Lawrence and Javier Roca Piera and Inmaculada Garc{\'{\i}}a and Mark H. Ellisman and Jos{\'{e}} Mar{\'{\i}}a Carazo}, editor = {Jos{\'{e}} M. Laginha M. Palma and Jack J. Dongarra and Vicente Hern{\'{a}}ndez and Ant{\'{o}}nio Augusto de Sousa}, title = {High Performance Computing in Electron Microscope Tomography of Complex Biological Structures}, booktitle = {High Performance Computing for Computational Science - {VECPAR} 2002, 5th International Conference, Porto, Portugal, June 26-28, 2002, Selected Papers and Invited Talks}, series = {Lecture Notes in Computer Science}, volume = {2565}, pages = {166--180}, publisher = {Springer}, year = {2002}, url = {https://doi.org/10.1007/3-540-36569-9\_11}, doi = {10.1007/3-540-36569-9\_11}, timestamp = {Tue, 14 May 2019 10:00:36 +0200}, biburl = {https://dblp.org/rec/conf/vecpar/FernandezLRGEC02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/pr/Pascual-MarquiPKC01, author = {Roberto D. Pascual{-}Marqui and Alberto D. Pascual{-}Montano and Kieko Kochi and Jos{\'{e}} Mar{\'{\i}}a Carazo}, title = {Smoothly distributed fuzzy c-means: a new self-organizing map}, journal = {Pattern Recognit.}, volume = {34}, number = {12}, pages = {2395--2402}, year = {2001}, url = {https://doi.org/10.1016/S0031-3203(00)00167-9}, doi = {10.1016/S0031-3203(00)00167-9}, timestamp = {Mon, 24 Feb 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/pr/Pascual-MarquiPKC01.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/imst/HermanMCGLM00, author = {Gabor T. Herman and Roberto Marabini and Jos{\'{e}} Mar{\'{\i}}a Carazo and Edgar Gardu{\~{n}}o and Robert M. Lewitt and Samuel Matej}, title = {Image processing approaches to biological three-dimensional electron microscopy}, journal = {Int. J. Imaging Syst. Technol.}, volume = {11}, number = {1}, pages = {12--29}, year = {2000}, url = {https://doi.org/10.1002/(SICI)1098-1098(2000)11:1\&\#60;12::AID-IMA3\&\#62;3.0.CO;2-N}, doi = {10.1002/(SICI)1098-1098(2000)11:1\&\#60;12::AID-IMA3\&\#62;3.0.CO;2-N}, timestamp = {Thu, 18 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/imst/HermanMCGLM00.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/annimab/PascualBGC00, author = {Alberto Pascual and Montserrat Barc{\'{e}}na and Juan Juli{\'{a}}n Merelo Guerv{\'{o}}s and Jos{\'{e}} Mar{\'{\i}}a Carazo}, editor = {Helge Malmgren and Magnus Borga and Lars Niklasson}, title = {Self-Organizing Networks for Mapping and Clustering Biological Macromolecules Images}, booktitle = {Artificial Neural Networks in Medicine and Biology, Proceedings of the {ANNIMAB-1} Conference, G{\"{o}}teborg, Sweden, 13-16 May 2000}, series = {Perspectives in Neural Computing}, pages = {283--288}, publisher = {Springer}, year = {2000}, url = {https://doi.org/10.1007/978-1-4471-0513-8\_43}, doi = {10.1007/978-1-4471-0513-8\_43}, timestamp = {Mon, 22 Jul 2019 13:45:56 +0200}, biburl = {https://dblp.org/rec/conf/annimab/PascualBGC00.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/CarazoSEFHMMSCAFHKPRB99, author = {Jos{\'{e}} Mar{\'{\i}}a Carazo and Ernst H. K. Stelzer and A. Engel and I. Fita and C. Henn and J. Machtynger and P. McNeil and David M. Shotton and Monica Chagoyen and Pedro A. de Alarc{\'{o}}n and R. Fritsch and J. B. Heymann and Susana G. Kalko and J. J. Pittet and Patricia Rodriguez{-}Tom{\'{e}} and Thomas Boudier}, title = {Organising multi-dimensional biological image information: the BioImage Database}, journal = {Nucleic Acids Res.}, volume = {27}, number = {1}, pages = {280--283}, year = {1999}, url = {https://doi.org/10.1093/nar/27.1.280}, doi = {10.1093/NAR/27.1.280}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/CarazoSEFHMMSCAFHKPRB99.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iwann/PascualBMC99, author = {Alberto Pascual and Montserrat Barc{\'{e}}na and Juan Juli{\'{a}}n Merelo Guerv{\'{o}}s and Jos{\'{e}} Mar{\'{\i}}a Carazo}, editor = {Jos{\'{e}} Mira and Juan Vincente S{\'{a}}nchez{-}Andr{\'{e}}s}, title = {Application of the Fuzzy Kohonen Clustering Network to Biological Macromolecules Images Classification}, booktitle = {Engineering Applications of Bio-Inspired Artificial Neural Networks, International Work-Conference on Artificial and Natural Neural Networks, {IWANN} '99, Alicante, Spain, June 2-4, 1999, Proceedings, Volume {II}}, series = {Lecture Notes in Computer Science}, volume = {1607}, pages = {331--340}, publisher = {Springer}, year = {1999}, url = {https://doi.org/10.1007/BFb0100500}, doi = {10.1007/BFB0100500}, timestamp = {Tue, 14 May 2019 10:00:51 +0200}, biburl = {https://dblp.org/rec/conf/iwann/PascualBMC99.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iwann/MereloRRCPC99, author = {Juan Juli{\'{a}}n Merelo Guerv{\'{o}}s and V{\'{\i}}ctor Manuel Rivas Santos and Gustavo Romero and Pedro {\'{A}}ngel Castillo Valdivieso and Alberto Pascual and Jos{\'{e}} Mar{\'{\i}}a Carazo}, editor = {Jos{\'{e}} Mira and Juan Vincente S{\'{a}}nchez{-}Andr{\'{e}}s}, title = {Improved Automatic Classification of Biological Particles from Electron-Microscopy Images Using Genetic Neural Nets}, booktitle = {Engineering Applications of Bio-Inspired Artificial Neural Networks, International Work-Conference on Artificial and Natural Neural Networks, {IWANN} '99, Alicante, Spain, June 2-4, 1999, Proceedings, Volume {II}}, series = {Lecture Notes in Computer Science}, volume = {1607}, pages = {373--382}, publisher = {Springer}, year = {1999}, url = {https://doi.org/10.1007/BFb0100504}, doi = {10.1007/BFB0100504}, timestamp = {Tue, 29 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/iwann/MereloRRCPC99.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/parco/CarazoDES99, author = {Jos{\'{e}} Mar{\'{\i}}a Carazo and Ramon Doallo and J. M. Eiroa and Jose Rodrigo Sanjurjo}, editor = {Erik H. D'Hollander and Gerhard R. Joubert and Frans J. Peters and Henk J. Sips}, title = {Bayesian image restoration: Parallel implementation on a {SGI} origin multiprocessor}, booktitle = {Parallel Computing: Fundamentals {\&} Applications, Proceedings of the Conference ParCo'99, 17-20 August 1999, Delft, The Netherlands}, pages = {85--94}, publisher = {Imperial College Press}, year = {1999}, timestamp = {Tue, 28 May 2013 07:39:29 +0200}, biburl = {https://dblp.org/rec/conf/parco/CarazoDES99.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/WangDC98, author = {Huaichun Wang and Joaqu{\'{\i}}n Dopazo and Jos{\'{e}} Mar{\'{\i}}a Carazo}, title = {Self-organizing tree growing network for classifying amino acids}, journal = {Bioinform.}, volume = {14}, number = {4}, pages = {376--377}, year = {1998}, url = {https://doi.org/10.1093/bioinformatics/14.4.376}, doi = {10.1093/BIOINFORMATICS/14.4.376}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/WangDC98.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/TrellesAVZC98, author = {Oswaldo Trelles and Miguel A. Andrade and Alfonso Valencia and Emilio L. Zapata and Jos{\'{e}} Mar{\'{\i}}a Carazo}, title = {Computational space reduction and parallelization of a new clustering approach for large groups of sequences}, journal = {Bioinform.}, volume = {14}, number = {5}, pages = {439--451}, year = {1998}, url = {https://doi.org/10.1093/bioinformatics/14.5.439}, doi = {10.1093/BIOINFORMATICS/14.5.439}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/TrellesAVZC98.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/TrellesCWDC98, author = {Oswaldo Trelles and C. Ceron and Huaichun Wang and Joaqu{\'{\i}}n Dopazo and Jos{\'{e}} Mar{\'{\i}}a Carazo}, title = {New phylogenetic venues opened by a novel implementation of the DNAml algorithm}, journal = {Bioinform.}, volume = {14}, number = {6}, pages = {544--545}, year = {1998}, url = {https://doi.org/10.1093/bioinformatics/14.6.544}, doi = {10.1093/BIOINFORMATICS/14.6.544}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/TrellesCWDC98.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/npl/GuervosPMMC98, author = {Juan Juli{\'{a}}n Merelo Guerv{\'{o}}s and Alberto Prieto and Federico Mor{\'{a}}n and Roberto Marabini and Jos{\'{e}} Mar{\'{\i}}a Carazo}, title = {Automatic Classification of Biological Particles from Electron-microscopy Images Using Conventional and Genetic-algorithm Optimized Learning Vector Quantization}, journal = {Neural Process. Lett.}, volume = {8}, number = {1}, pages = {55--65}, year = {1998}, url = {https://doi.org/10.1023/A:1009617113191}, doi = {10.1023/A:1009617113191}, timestamp = {Sun, 25 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/npl/GuervosPMMC98.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/pc/CeronDZCT98, author = {C. Ceron and Joaqu{\'{\i}}n Dopazo and Emilio L. Zapata and Jos{\'{e}} Mar{\'{\i}}a Carazo and Oswaldo Trelles}, title = {Parallel Implementation of DNAml Program on Message-Passing Architectures}, journal = {Parallel Comput.}, volume = {24}, number = {5-6}, pages = {701--716}, year = {1998}, url = {https://doi.org/10.1016/S0167-8191(98)00002-7}, doi = {10.1016/S0167-8191(98)00002-7}, timestamp = {Sat, 22 Feb 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/pc/CeronDZCT98.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/gcb/LindekFSCEFHMSM98, author = {S. Lindek and R. Fritsch and Ernst H. K. Stelzer and Jos{\'{e}} Mar{\'{\i}}a Carazo and A. Engel and I. Fita and C. Henn and P. McNeil and David M. Shotton and J. Machtynger}, title = {Biolmage, the database of biological microscopy data}, booktitle = {Proceedings of the German Conference on Bioinformatics, {GCB} 1998, University of Cologne, Germany, October 1998}, publisher = {Oxford University Press}, year = {1998}, timestamp = {Fri, 02 Aug 2019 15:48:14 +0200}, biburl = {https://dblp.org/rec/conf/gcb/LindekFSCEFHMSM98.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/pdp/MorenoFZCT98, author = {Andr{\'{e}}s Rodr{\'{\i}}guez Moreno and Luis Gerardo de la Fraga and Emilio L. Zapata and Jos{\'{e}} Mar{\'{\i}}a Carazo and Oswaldo Trelles}, title = {Biological sequence analysis on distributed-shared memory multiprocessors}, booktitle = {Proceedings of the Sixth Euromicro Workshop on Parallel and Distributed Processing - {PDP} '98, University of Madrid, Madrid, Spain, January 21-23, 1998-}, pages = {20--26}, publisher = {{IEEE} Computer Society}, year = {1998}, url = {https://doi.org/10.1109/EMPDP.1998.647174}, doi = {10.1109/EMPDP.1998.647174}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/pdp/MorenoFZCT98.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iwann/DopazoWC97, author = {Joaqu{\'{\i}}n Dopazo and Huaichun Wang and Jos{\'{e}} Mar{\'{\i}}a Carazo}, editor = {Jos{\'{e}} Mira and Roberto Moreno{-}D{\'{\i}}az and Joan Cabestany}, title = {A New Type of Unsupervised Growing Neural Network for Biological Sequence Classification That Adopts the Topology of a Phylogenetic Tree}, booktitle = {Biological and Artificial Computation: From Neuroscience to Technology, International Work-Conference on Artificial and Natural Neural Networks, {IWANN} '97, Lanzarote, Canary Islands, Spain, June 4-6, 1997, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {1240}, pages = {932--941}, publisher = {Springer}, year = {1997}, url = {https://doi.org/10.1007/BFb0032553}, doi = {10.1007/BFB0032553}, timestamp = {Tue, 14 May 2019 10:00:51 +0200}, biburl = {https://dblp.org/rec/conf/iwann/DopazoWC97.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iwann/MereloPMMC97, author = {Juan Juli{\'{a}}n Merelo Guerv{\'{o}}s and Alberto Prieto and Federico Mor{\'{a}}n and Roberto Marabini and Jos{\'{e}} Mar{\'{\i}}a Carazo}, editor = {Jos{\'{e}} Mira and Roberto Moreno{-}D{\'{\i}}az and Joan Cabestany}, title = {A GA-optimized Neural Network for Classification of Biological Particles from Electron-Microscopy Images}, booktitle = {Biological and Artificial Computation: From Neuroscience to Technology, International Work-Conference on Artificial and Natural Neural Networks, {IWANN} '97, Lanzarote, Canary Islands, Spain, June 4-6, 1997, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {1240}, pages = {1174--1182}, publisher = {Springer}, year = {1997}, url = {https://doi.org/10.1007/BFb0032577}, doi = {10.1007/BFB0032577}, timestamp = {Sun, 25 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/iwann/MereloPMMC97.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/prl/MarabiniC96, author = {Roberto Marabini and Jos{\'{e}} Mar{\'{\i}}a Carazo}, title = {On a new computationally fast image invariant based on bispectral projections}, journal = {Pattern Recognit. Lett.}, volume = {17}, number = {9}, pages = {959--967}, year = {1996}, url = {https://doi.org/10.1016/0167-8655(96)00053-0}, doi = {10.1016/0167-8655(96)00053-0}, timestamp = {Sat, 22 Feb 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/prl/MarabiniC96.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/sigpro/GarciaRSCZ96, author = {Inmaculada Garc{\'{\i}}a and J. Roca and Jose Rodrigo Sanjurjo and Jos{\'{e}} Mar{\'{\i}}a Carazo and Emilio L. Zapata}, title = {Implementation and experimental evaluation of the constrained {ART} algorithm on a multicomputer system}, journal = {Signal Process.}, volume = {51}, number = {1}, pages = {69--76}, year = {1996}, url = {https://doi.org/10.1016/0165-1684(96)00032-1}, doi = {10.1016/0165-1684(96)00032-1}, timestamp = {Sat, 22 Feb 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/sigpro/GarciaRSCZ96.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/Trelles-SalazarZDCC95, author = {Oswaldo Trelles{-}Salazar and Emilio L. Zapata and Joaqu{\'{\i}}n Dopazo and A. F. Coulson and Jos{\'{e}} Mar{\'{\i}}a Carazo}, title = {An image-processing approach to dotplots: an X-Window-based program for interactive analysis of dotplots derived from sequence and structural data}, journal = {Comput. Appl. Biosci.}, volume = {11}, number = {3}, pages = {301--308}, year = {1995}, url = {https://doi.org/10.1093/bioinformatics/11.3.301}, doi = {10.1093/BIOINFORMATICS/11.3.301}, timestamp = {Fri, 15 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/Trelles-SalazarZDCC95.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/Trelles-SalazarZC94, author = {Oswaldo Trelles{-}Salazar and Emilio L. Zapata and Jos{\'{e}} Mar{\'{\i}}a Carazo}, title = {On an efficient parallelization of exhaustive sequence comparison algorithms on message passing architectures}, journal = {Comput. Appl. Biosci.}, volume = {10}, number = {5}, pages = {509--511}, year = {1994}, url = {https://doi.org/10.1093/bioinformatics/10.5.509}, doi = {10.1093/BIOINFORMATICS/10.5.509}, timestamp = {Tue, 01 Jun 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/Trelles-SalazarZC94.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/sigpro/MarabiniC94, author = {Roberto Marabini and Jos{\'{e}} Mar{\'{\i}}a Carazo}, title = {Practical issues on invariant image averaging using the Bispectrum}, journal = {Signal Process.}, volume = {40}, number = {2-3}, pages = {119--128}, year = {1994}, url = {https://doi.org/10.1016/0165-1684(94)90063-9}, doi = {10.1016/0165-1684(94)90063-9}, timestamp = {Sat, 22 Feb 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/sigpro/MarabiniC94.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/hpcn/Trelles-SalazarZC94, author = {Oswaldo Trelles{-}Salazar and Emilio L. Zapata and Jos{\'{e}} Mar{\'{\i}}a Carazo}, editor = {Wolfgang Gentzsch and Uwe Harms}, title = {Mapping Strategies for Sequential Sequence Comparison Algorithms on LAN-Based Message Passing Architectures}, booktitle = {High-Performance Computing and Networking, International Conference and Exhibition, {HPCN} Europe 1994, Munich, Germany, April 18-20, 1994, Proceedings, Volume {I:} Applications}, series = {Lecture Notes in Computer Science}, volume = {796}, pages = {197--202}, publisher = {Springer}, year = {1994}, url = {https://doi.org/10.1007/BFb0020372}, doi = {10.1007/BFB0020372}, timestamp = {Tue, 14 May 2019 10:00:47 +0200}, biburl = {https://dblp.org/rec/conf/hpcn/Trelles-SalazarZC94.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/pdp/UjaldonAZCC94, author = {Manuel Ujaldon and Rafael Asenjo and Emilio L. Zapata and Jos{\'{e}} Carlos Cabaleiro and Jos{\'{e}} Mar{\'{\i}}a Carazo}, title = {3d Reconstruction Of Macromolecules On Multiprocessors}, booktitle = {Proceedings of the Second Euromicro Workshop on Parallel and Distributed Processing, {PDP} 1994, January 26-28, 1994, Malaga, Spain}, pages = {260--267}, publisher = {{IEEE}}, year = {1994}, url = {https://doi.org/10.1109/EMPDP.1994.592499}, doi = {10.1109/EMPDP.1994.592499}, timestamp = {Wed, 16 Oct 2019 14:14:55 +0200}, biburl = {https://dblp.org/rec/conf/pdp/UjaldonAZCC94.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/vbc/MarabiniVFCLOF94, author = {Roberto Marabini and C. Vaquerizo and Jos{\'{e}}{-}Jes{\'{u}}s Fern{\'{a}}ndez and Jos{\'{e}} Mar{\'{\i}}a Carazo and M. Ladjadj and O. Odesanya and J. Frank}, editor = {Richard A. Robb}, title = {Prototype for a new distributed database of volume data obtained by 3D imaging}, booktitle = {Visualization in Biomedical Computing 1994, Rochester, MN, USA, 4-7 October 1994}, series = {{SPIE} Proceedings}, volume = {2359}, publisher = {{SPIE}}, year = {1994}, url = {https://doi.org/10.1117/12.185208}, doi = {10.1117/12.185208}, timestamp = {Thu, 23 Aug 2018 12:58:00 +0200}, biburl = {https://dblp.org/rec/conf/vbc/MarabiniVFCLOF94.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/pdp/CabaleiroCZ93, author = {Jos{\'{e}} Carlos Cabaleiro and Jos{\'{e}} Mar{\'{\i}}a Carazo and Emilio L. Zapata}, title = {Parallel algorithm for principal components based on Hotelling's iterative procedure}, booktitle = {1993 Euromicro Workshop on Parallel and Distributed Processing, {PDP} 1993, Gran Canaria, Spain, 27-29 January 1993}, pages = {144--149}, publisher = {{IEEE}}, year = {1993}, url = {https://doi.org/10.1109/EMPDP.1993.336409}, doi = {10.1109/EMPDP.1993.336409}, timestamp = {Wed, 16 Oct 2019 14:14:55 +0200}, biburl = {https://dblp.org/rec/conf/pdp/CabaleiroCZ93.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/sigpro/ZapataBRBPC92, author = {Emilio L. Zapata and Ignacio Benavides and Francisco F. Rivera and Javier D. Bruguera and Tom{\'{a}}s F. Pena and Jos{\'{e}} Mar{\'{\i}}a Carazo}, title = {Image reconstruction on hypercube computers: Application to electron microscopy}, journal = {Signal Process.}, volume = {27}, number = {1}, pages = {51--64}, year = {1992}, url = {https://doi.org/10.1016/0165-1684(92)90111-9}, doi = {10.1016/0165-1684(92)90111-9}, timestamp = {Sat, 22 Feb 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/sigpro/ZapataBRBPC92.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/prl/RiveraZC90, author = {Francisco F. Rivera and Emilio L. Zapata and Jos{\'{e}} Mar{\'{\i}}a Carazo}, title = {Cluster validity based on the hard tendency of the fuzzy classification}, journal = {Pattern Recognit. Lett.}, volume = {11}, number = {1}, pages = {7--12}, year = {1990}, url = {https://doi.org/10.1016/0167-8655(90)90050-C}, doi = {10.1016/0167-8655(90)90050-C}, timestamp = {Sat, 22 Feb 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/prl/RiveraZC90.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/sigpro/ZapataBPRC90, author = {Emilio L. Zapata and Jos{\'{e}} Ignacio Benavides Ben{\'{\i}}tez and Oscar G. Plata and Francisco F. Rivera and Jos{\'{e}} Mar{\'{\i}}a Carazo}, title = {Image template matching on hypercube {SIMD} computers}, journal = {Signal Process.}, volume = {21}, number = {1}, pages = {49--60}, year = {1990}, url = {https://doi.org/10.1016/0165-1684(90)90026-U}, doi = {10.1016/0165-1684(90)90026-U}, timestamp = {Sat, 22 Feb 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/sigpro/ZapataBPRC90.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icassp/Carazo88, author = {Jos{\'{e}} Mar{\'{\i}}a Carazo}, title = {3-D electron microscopy and incomplete angular coverage: a restoration scheme based on projections onto convex sets}, booktitle = {{IEEE} International Conference on Acoustics, Speech, and Signal Processing, {ICASSP} '88, New York, New York, USA, April 11-14, 1988}, pages = {886--889}, publisher = {{IEEE}}, year = {1988}, url = {https://doi.org/10.1109/ICASSP.1988.196730}, doi = {10.1109/ICASSP.1988.196730}, timestamp = {Mon, 09 Aug 2021 14:54:02 +0200}, biburl = {https://dblp.org/rec/conf/icassp/Carazo88.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
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