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ORCIDBibTeX records: Cyrus Chothia
@article{DBLP:journals/nar/LewisSABBCCDFGJKKMMMOOPRSSVO15,
author = {Tony E. Lewis and
Ian Sillitoe and
Antonina Andreeva and
Tom L. Blundell and
Daniel W. A. Buchan and
Cyrus Chothia and
Domenico Cozzetto and
Jose M. Dana and
Ioannis Filippis and
Julian Gough and
David T. Jones and
Lawrence A. Kelley and
Gerard J. Kleywegt and
Federico Minneci and
Jaina Mistry and
Alexey G. Murzin and
Bernardo Ochoa{-}Monta{\~{n}}o and
Matt E. Oates and
Marco Punta and
Owen J. L. Rackham and
Jonathan Stahlhacke and
Michael J. E. Sternberg and
Sameer Velankar and
Christine A. Orengo},
title = {Genome3D: exploiting structure to help users understand their sequences},
journal = {Nucleic Acids Res.},
volume = {43},
number = {Database-Issue},
pages = {382--386},
year = {2015},
url = {https://doi.org/10.1093/nar/gku973},
doi = {10.1093/NAR/GKU973},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LewisSABBCCDFGJKKMMMOOPRSSVO15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/AndreevaHCKM14,
author = {Antonina Andreeva and
Dave Howorth and
Cyrus Chothia and
Eugene Kulesha and
Alexey G. Murzin},
title = {{SCOP2} prototype: a new approach to protein structure mining},
journal = {Nucleic Acids Res.},
volume = {42},
number = {Database-Issue},
pages = {310--314},
year = {2014},
url = {https://doi.org/10.1093/nar/gkt1242},
doi = {10.1093/NAR/GKT1242},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/AndreevaHCKM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LewisSABBCCDFGHJKKMMMORSSVYO13,
author = {Tony E. Lewis and
Ian Sillitoe and
Antonina Andreeva and
Tom L. Blundell and
Daniel W. A. Buchan and
Cyrus Chothia and
Alison L. Cuff and
Jose M. Dana and
Ioannis Filippis and
Julian Gough and
Sarah Hunter and
David T. Jones and
Lawrence A. Kelley and
Gerard J. Kleywegt and
Federico Minneci and
Alex L. Mitchell and
Alexey G. Murzin and
Bernardo Ochoa{-}Monta{\~{n}}o and
Owen J. L. Rackham and
James Smith and
Michael J. E. Sternberg and
Sameer Velankar and
Corin Yeats and
Christine A. Orengo},
title = {Genome3D: a {UK} collaborative project to annotate genomic sequences
with predicted 3D structures based on {SCOP} and {CATH} domains},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {499--507},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1266},
doi = {10.1093/NAR/GKS1266},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/LewisSABBCCDFGHJKKMMMORSSVYO13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MoraisFRWPCG11,
author = {David A. de Lima Morais and
Hai Fang and
Owen J. L. Rackham and
Derek Wilson and
Ralph Pethica and
Cyrus Chothia and
Julian Gough},
title = {{SUPERFAMILY} 1.75 including a domain-centric gene ontology method},
journal = {Nucleic Acids Res.},
volume = {39},
number = {Database-Issue},
pages = {427--434},
year = {2011},
url = {https://doi.org/10.1093/nar/gkq1130},
doi = {10.1093/NAR/GKQ1130},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MoraisFRWPCG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WilsonPZTVMCG09,
author = {Derek Wilson and
Ralph Pethica and
Yiduo Zhou and
Charles Talbot and
Christine Vogel and
Martin Madera and
Cyrus Chothia and
Julian Gough},
title = {{SUPERFAMILY} - sophisticated comparative genomics, data mining, visualization
and phylogeny},
journal = {Nucleic Acids Res.},
volume = {37},
number = {Database-Issue},
pages = {380--386},
year = {2009},
url = {https://doi.org/10.1093/nar/gkn762},
doi = {10.1093/NAR/GKN762},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WilsonPZTVMCG09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/AndreevaHCBHCM08,
author = {Antonina Andreeva and
Dave Howorth and
John{-}Marc Chandonia and
Steven E. Brenner and
Tim J. P. Hubbard and
Cyrus Chothia and
Alexey G. Murzin},
title = {Data growth and its impact on the {SCOP} database: new developments},
journal = {Nucleic Acids Res.},
volume = {36},
number = {Database-Issue},
pages = {419--425},
year = {2008},
url = {https://doi.org/10.1093/nar/gkm993},
doi = {10.1093/NAR/GKM993},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/AndreevaHCBHCM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WilsonMVCG07,
author = {Derek Wilson and
Martin Madera and
Christine Vogel and
Cyrus Chothia and
Julian Gough},
title = {The {SUPERFAMILY} database in 2007: families and functions},
journal = {Nucleic Acids Res.},
volume = {35},
number = {Database-Issue},
pages = {308--313},
year = {2007},
url = {https://doi.org/10.1093/nar/gkl910},
doi = {10.1093/NAR/GKL910},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WilsonMVCG07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/VogelC06,
author = {Christine Vogel and
Cyrus Chothia},
title = {Protein Family Expansions and Biological Complexity},
journal = {PLoS Comput. Biol.},
volume = {2},
number = {5},
year = {2006},
url = {https://doi.org/10.1371/journal.pcbi.0020048},
doi = {10.1371/JOURNAL.PCBI.0020048},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/VogelC06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/LevyPCT06,
author = {Emmanuel D. Levy and
Jos{\'{e}} B. Pereira{-}Leal and
Cyrus Chothia and
Sarah A. Teichmann},
title = {3D Complex: {A} Structural Classification of Protein Complexes},
journal = {PLoS Comput. Biol.},
volume = {2},
number = {11},
year = {2006},
url = {https://doi.org/10.1371/journal.pcbi.0020155},
doi = {10.1371/JOURNAL.PCBI.0020155},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/LevyPCT06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/AndreevaHBHCM04,
author = {Antonina Andreeva and
Dave Howorth and
Steven E. Brenner and
Tim J. P. Hubbard and
Cyrus Chothia and
Alexey G. Murzin},
title = {{SCOP} database in 2004: refinements integrate structure and sequence
family data},
journal = {Nucleic Acids Res.},
volume = {32},
number = {Database-Issue},
pages = {226--229},
year = {2004},
url = {https://doi.org/10.1093/nar/gkh039},
doi = {10.1093/NAR/GKH039},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/AndreevaHBHCM04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MaderaVKCG04,
author = {Martin Madera and
Christine Vogel and
Sarah K. Kummerfeld and
Cyrus Chothia and
Julian Gough},
title = {The {SUPERFAMILY} database in 2004: additions and improvements},
journal = {Nucleic Acids Res.},
volume = {32},
number = {Database-Issue},
pages = {235--239},
year = {2004},
url = {https://doi.org/10.1093/nar/gkh117},
doi = {10.1093/NAR/GKH117},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/MaderaVKCG04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ConteBHCM03,
author = {Loredana Lo Conte and
Steven E. Brenner and
Tim J. P. Hubbard and
Cyrus Chothia and
Alexey G. Murzin},
title = {{SCOP} database in 2002: refinements accommodate structural genomics},
journal = {Nucleic Acids Res.},
volume = {30},
number = {1},
pages = {264--267},
year = {2002},
url = {https://doi.org/10.1093/nar/30.1.264},
doi = {10.1093/NAR/30.1.264},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ConteBHCM03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GoughC03,
author = {Julian Gough and
Cyrus Chothia},
title = {{SUPERFAMILY:} HMMs representing all proteins of known structure.
{SCOP} sequence searches, alignments and genome assignments},
journal = {Nucleic Acids Res.},
volume = {30},
number = {1},
pages = {268--272},
year = {2002},
url = {https://doi.org/10.1093/nar/30.1.268},
doi = {10.1093/NAR/30.1.268},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GoughC03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ParkHC00,
author = {Jong{-}Chan Park and
Liisa Holm and
Cyrus Chothia},
title = {Sequence search algorithm assessment and testing toolkit {(SAT)}},
journal = {Bioinform.},
volume = {16},
number = {2},
pages = {104--110},
year = {2000},
url = {https://doi.org/10.1093/bioinformatics/16.2.104},
doi = {10.1093/BIOINFORMATICS/16.2.104},
timestamp = {Thu, 04 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ParkHC00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TeichmannCCP00,
author = {Sarah A. Teichmann and
Cyrus Chothia and
George M. Church and
Jong{-}Chan Park},
title = {Fast assignment of protein structures to sequences using the Intermediate
Sequence Library {PDB-ISL}},
journal = {Bioinform.},
volume = {16},
number = {2},
pages = {117--124},
year = {2000},
url = {https://doi.org/10.1093/bioinformatics/16.2.117},
doi = {10.1093/BIOINFORMATICS/16.2.117},
timestamp = {Thu, 04 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TeichmannCCP00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ParkHHC00,
author = {Jong{-}Chan Park and
Liisa Holm and
Andreas Heger and
Cyrus Chothia},
title = {{RSDB:} representative protein sequence databases have high information
content},
journal = {Bioinform.},
volume = {16},
number = {5},
pages = {458--464},
year = {2000},
url = {https://doi.org/10.1093/bioinformatics/16.5.458},
doi = {10.1093/BIOINFORMATICS/16.5.458},
timestamp = {Thu, 04 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ParkHHC00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/StoyanovKGKC00,
author = {Ognyan Stoyanov and
Alexander Kister and
Israel M. Gelfand and
Casimir A. Kulikowski and
Cyrus Chothia},
title = {Geometric Invariant Core for the {CL} and {CH1} Domains of Immunoglobulin
Molecules},
journal = {J. Comput. Biol.},
volume = {7},
number = {5},
pages = {673--684},
year = {2000},
url = {https://doi.org/10.1089/106652701446143},
doi = {10.1089/106652701446143},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/StoyanovKGKC00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ConteAHBMC00,
author = {Loredana Lo Conte and
Bart Ailey and
Tim J. P. Hubbard and
Steven E. Brenner and
Alexey G. Murzin and
Cyrus Chothia},
title = {{SCOP:} a Structural Classification of Proteins database},
journal = {Nucleic Acids Res.},
volume = {28},
number = {1},
pages = {257--259},
year = {2000},
url = {https://doi.org/10.1093/nar/28.1.257},
doi = {10.1093/NAR/28.1.257},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ConteAHBMC00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/TeichmannCCP00,
author = {Sarah A. Teichmann and
Cyrus Chothia and
George M. Church and
Jong{-}Chan Park},
editor = {Ron Shamir and
Satoru Miyano and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {PDB{\_}ISL: an intermediate sequence library for protein structure
assignment},
booktitle = {Proceedings of the Fourth Annual International Conference on Computational
Molecular Biology, {RECOMB} 2000, Tokyo, Japan, April 8-11, 2000},
pages = {283--289},
publisher = {{ACM}},
year = {2000},
url = {https://doi.org/10.1145/332306.332566},
doi = {10.1145/332306.332566},
timestamp = {Thu, 04 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/TeichmannCCP00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HubbardABMC99,
author = {Tim J. P. Hubbard and
Bart Ailey and
Steven E. Brenner and
Alexey G. Murzin and
Cyrus Chothia},
title = {{SCOP:} a Structural Classification of Proteins database},
journal = {Nucleic Acids Res.},
volume = {27},
number = {1},
pages = {254--256},
year = {1999},
url = {https://doi.org/10.1093/nar/27.1.254},
doi = {10.1093/NAR/27.1.254},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HubbardABMC99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/TeichmannPC99,
author = {Sarah A. Teichmann and
Jong{-}Chan Park and
Cyrus Chothia},
editor = {Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Genome sequences and protein structures},
booktitle = {Proceedings of the Third Annual International Conference on Research
in Computational Molecular Biology, {RECOMB} 1999, Lyon, France, April
11-14, 1999},
pages = {114},
publisher = {{ACM}},
year = {1999},
url = {https://doi.org/10.1145/299432.303134},
doi = {10.1145/299432.303134},
timestamp = {Thu, 04 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/TeichmannPC99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HubbardMBC97,
author = {Tim J. P. Hubbard and
Alexey G. Murzin and
Steven E. Brenner and
Cyrus Chothia},
title = {{SCOP:} a structural classification of proteins database},
journal = {Nucleic Acids Res.},
volume = {25},
number = {1},
pages = {236--239},
year = {1997},
url = {https://doi.org/10.1093/nar/25.1.236},
doi = {10.1093/NAR/25.1.236},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HubbardMBC97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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