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ORCIDBibTeX records: Mark Craven
@inproceedings{DBLP:conf/aaai/SoodC22,
author = {Akshay Sood and
Mark Craven},
title = {Feature Importance Explanations for Temporal Black-Box Models},
booktitle = {Thirty-Sixth {AAAI} Conference on Artificial Intelligence, {AAAI}
2022, Thirty-Fourth Conference on Innovative Applications of Artificial
Intelligence, {IAAI} 2022, The Twelveth Symposium on Educational Advances
in Artificial Intelligence, {EAAI} 2022 Virtual Event, February 22
- March 1, 2022},
pages = {8351--8360},
publisher = {{AAAI} Press},
year = {2022},
url = {https://doi.org/10.1609/aaai.v36i8.20810},
doi = {10.1609/AAAI.V36I8.20810},
timestamp = {Mon, 04 Sep 2023 12:29:24 +0200},
biburl = {https://dblp.org/rec/conf/aaai/SoodC22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2102-11934,
author = {Akshay Sood and
Mark Craven},
title = {Feature Importance Explanations for Temporal Black-Box Models},
journal = {CoRR},
volume = {abs/2102.11934},
year = {2021},
url = {https://arxiv.org/abs/2102.11934},
eprinttype = {arXiv},
eprint = {2102.11934},
timestamp = {Tue, 02 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2102-11934.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/SverchkovHGC20,
author = {Yuriy Sverchkov and
Yi{-}Hsuan Ho and
Audrey P. Gasch and
Mark Craven},
title = {Context-Specific Nested Effects Models},
journal = {J. Comput. Biol.},
volume = {27},
number = {3},
pages = {403--417},
year = {2020},
url = {https://doi.org/10.1089/cmb.2019.0459},
doi = {10.1089/CMB.2019.0459},
timestamp = {Wed, 16 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/SverchkovHGC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShinHHCK19,
author = {Sunyoung Shin and
Rebecca Hudson and
Christopher Harrison and
Mark Craven and
S{\"{u}}nd{\"{u}}z Keles},
title = {atSNP Search: a web resource for statistically evaluating influence
of human genetic variation on transcription factor binding},
journal = {Bioinform.},
volume = {35},
number = {15},
pages = {2657--2659},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1010},
doi = {10.1093/BIOINFORMATICS/BTY1010},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShinHHCK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/KiblawiCHPPGAC19,
author = {Sid Kiblawi and
Deborah Chasman and
Amanda Henning and
Eunju Park and
Hoifung Poon and
Michael Gould and
Paul Ahlquist and
Mark Craven},
title = {Augmenting subnetwork inference with information extracted from the
scientific literature},
journal = {PLoS Comput. Biol.},
volume = {15},
number = {6},
year = {2019},
url = {https://doi.org/10.1371/journal.pcbi.1006758},
doi = {10.1371/JOURNAL.PCBI.1006758},
timestamp = {Sat, 25 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ploscb/KiblawiCHPPGAC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aaai/LeeSC19,
author = {Kyubin Lee and
Akshay Sood and
Mark Craven},
title = {Understanding Learned Models by Identifying Important Features at
the Right Resolution},
booktitle = {The Thirty-Third {AAAI} Conference on Artificial Intelligence, {AAAI}
2019, The Thirty-First Innovative Applications of Artificial Intelligence
Conference, {IAAI} 2019, The Ninth {AAAI} Symposium on Educational
Advances in Artificial Intelligence, {EAAI} 2019, Honolulu, Hawaii,
USA, January 27 - February 1, 2019},
pages = {4155--4163},
publisher = {{AAAI} Press},
year = {2019},
url = {https://doi.org/10.1609/aaai.v33i01.33014155},
doi = {10.1609/AAAI.V33I01.33014155},
timestamp = {Mon, 04 Sep 2023 12:29:24 +0200},
biburl = {https://dblp.org/rec/conf/aaai/LeeSC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SverchkovHGC18,
author = {Yuriy Sverchkov and
Yi{-}Hsuan Ho and
Audrey P. Gasch and
Mark Craven},
editor = {Benjamin J. Raphael},
title = {Context-Specific Nested Effects Models},
booktitle = {Research in Computational Molecular Biology - 22nd Annual International
Conference, {RECOMB} 2018, Paris, France, April 21-24, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10812},
pages = {194--210},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-89929-9\_13},
doi = {10.1007/978-3-319-89929-9\_13},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SverchkovHGC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1811-07279,
author = {Kyubin Lee and
Akshay Sood and
Mark Craven},
title = {Understanding Learned Models by Identifying Important Features at
the Right Resolution},
journal = {CoRR},
volume = {abs/1811.07279},
year = {2018},
url = {http://arxiv.org/abs/1811.07279},
eprinttype = {arXiv},
eprint = {1811.07279},
timestamp = {Sun, 25 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1811-07279.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/SverchkovC17,
author = {Yuriy Sverchkov and
Mark Craven},
title = {A review of active learning approaches to experimental design for
uncovering biological networks},
journal = {PLoS Comput. Biol.},
volume = {13},
number = {6},
year = {2017},
url = {https://doi.org/10.1371/journal.pcbi.1005466},
doi = {10.1371/JOURNAL.PCBI.1005466},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/SverchkovC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/ChasmanGHFAC14,
author = {Deborah Chasman and
Brandi Gancarz and
Linhui Hao and
Michael Ferris and
Paul Ahlquist and
Mark Craven},
title = {Inferring Host Gene Subnetworks Involved in Viral Replication},
journal = {PLoS Comput. Biol.},
volume = {10},
number = {5},
year = {2014},
url = {https://doi.org/10.1371/journal.pcbi.1003626},
doi = {10.1371/JOURNAL.PCBI.1003626},
timestamp = {Fri, 22 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/ChasmanGHFAC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/HaoHWCNA13,
author = {Linhui Hao and
Qiuling He and
Zhishi Wang and
Mark Craven and
Michael A. Newton and
Paul Ahlquist},
title = {Limited Agreement of Independent RNAi Screens for Virus-Required Host
Genes Owes More to False-Negative than False-Positive Factors},
journal = {PLoS Comput. Biol.},
volume = {9},
number = {9},
year = {2013},
url = {https://doi.org/10.1371/journal.pcbi.1003235},
doi = {10.1371/JOURNAL.PCBI.1003235},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/HaoHWCNA13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/VlachosC12,
author = {Andreas Vlachos and
Mark Craven},
title = {Biomedical event extraction from abstracts and full papers using search-based
structured prediction},
journal = {{BMC} Bioinform.},
volume = {13},
number = {{S-11}},
pages = {S5},
year = {2012},
url = {https://doi.org/10.1186/1471-2105-13-S11-S5},
doi = {10.1186/1471-2105-13-S11-S5},
timestamp = {Tue, 03 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/VlachosC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1206-3275,
author = {Keith Noto and
Mark Craven},
title = {Learning Hidden Markov Models for Regression using Path Aggregation},
journal = {CoRR},
volume = {abs/1206.3275},
year = {2012},
url = {http://arxiv.org/abs/1206.3275},
eprinttype = {arXiv},
eprint = {1206.3275},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1206-3275.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/VlachosC11,
author = {Andreas Vlachos and
Mark Craven},
editor = {Jun'ichi Tsujii and
Jin{-}Dong Kim and
Sampo Pyysalo},
title = {Biomedical Event Extraction from Abstracts and Full Papers using Search-based
Structured Prediction},
booktitle = {Proceedings of BioNLP Shared Task 2011 Workshop, Portland, Oregon,
USA, June 24, 2011},
pages = {36--40},
publisher = {Association for Computational Linguistics},
year = {2011},
url = {https://aclanthology.org/W11-1805/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/VlachosC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/conll/VlachosC11,
author = {Andreas Vlachos and
Mark Craven},
editor = {Sharon Goldwater and
Christopher D. Manning},
title = {Search-based Structured Prediction applied to Biomedical Event Extraction},
booktitle = {Proceedings of the Fifteenth Conference on Computational Natural Language
Learning, CoNLL 2011, Portland, Oregon, USA, June 23-24, 2011},
pages = {49--57},
publisher = {{ACL}},
year = {2011},
url = {https://aclanthology.org/W11-0307/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/conll/VlachosC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ijcai/AndrzejewskiZCR11,
author = {David Andrzejewski and
Xiaojin Zhu and
Mark Craven and
Benjamin Recht},
editor = {Toby Walsh},
title = {A Framework for Incorporating General Domain Knowledge into Latent
Dirichlet Allocation Using First-Order Logic},
booktitle = {{IJCAI} 2011, Proceedings of the 22nd International Joint Conference
on Artificial Intelligence, Barcelona, Catalonia, Spain, July 16-22,
2011},
pages = {1171--1177},
publisher = {{IJCAI/AAAI}},
year = {2011},
url = {https://doi.org/10.5591/978-1-57735-516-8/IJCAI11-200},
doi = {10.5591/978-1-57735-516-8/IJCAI11-200},
timestamp = {Tue, 20 Aug 2019 16:16:04 +0200},
biburl = {https://dblp.org/rec/conf/ijcai/AndrzejewskiZCR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/conll/VlachosC10,
author = {Andreas Vlachos and
Mark Craven},
editor = {Rich{\'{a}}rd Farkas and
Veronika Vincze and
Gy{\"{o}}rgy Szarvas and
Gy{\"{o}}rgy M{\'{o}}ra and
J{\'{a}}nos Csirik},
title = {Detecting Speculative Language Using Syntactic Dependencies and Logistic
Regression},
booktitle = {Proceedings of the Fourteenth Conference on Computational Natural
Language Learning: Shared Task, CoNLL 2010, Uppsala, Sweden, July
15-16, 2010},
pages = {18--25},
publisher = {{ACL}},
year = {2010},
url = {https://aclanthology.org/W10-3003/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/conll/VlachosC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SmithVBC09,
author = {Adam A. Smith and
Aaron L. Vollrath and
Christopher A. Bradfield and
Mark Craven},
title = {Clustered alignments of gene-expression time series data},
journal = {Bioinform.},
volume = {25},
number = {12},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp206},
doi = {10.1093/BIOINFORMATICS/BTP206},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SmithVBC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/VollrathSCB09,
author = {Aaron L. Vollrath and
Adam A. Smith and
Mark Craven and
Christopher A. Bradfield},
title = {EDGE\({}^{\mbox{3}}\): {A} web-based solution for management and analysis
of Agilent two color microarray experiments},
journal = {{BMC} Bioinform.},
volume = {10},
pages = {280},
year = {2009},
url = {https://doi.org/10.1186/1471-2105-10-280},
doi = {10.1186/1471-2105-10-280},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/VollrathSCB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icml/AndrzejewskiZC09,
author = {David Andrzejewski and
Xiaojin Zhu and
Mark Craven},
editor = {Andrea Pohoreckyj Danyluk and
L{\'{e}}on Bottou and
Michael L. Littman},
title = {Incorporating domain knowledge into topic modeling via Dirichlet Forest
priors},
booktitle = {Proceedings of the 26th Annual International Conference on Machine
Learning, {ICML} 2009, Montreal, Quebec, Canada, June 14-18, 2009},
series = {{ACM} International Conference Proceeding Series},
volume = {382},
pages = {25--32},
publisher = {{ACM}},
year = {2009},
url = {https://doi.org/10.1145/1553374.1553378},
doi = {10.1145/1553374.1553378},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icml/AndrzejewskiZC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/SmithVBC08,
author = {Adam A. Smith and
Aaron L. Vollrath and
Christopher A. Bradfield and
Mark Craven},
title = {Similarity Queries for Temporal Toxicogenomic Expression Profiles},
journal = {PLoS Comput. Biol.},
volume = {4},
number = {7},
year = {2008},
url = {https://doi.org/10.1371/journal.pcbi.1000116},
doi = {10.1371/JOURNAL.PCBI.1000116},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/SmithVBC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/emnlp/SettlesC08,
author = {Burr Settles and
Mark Craven},
title = {An Analysis of Active Learning Strategies for Sequence Labeling Tasks},
booktitle = {2008 Conference on Empirical Methods in Natural Language Processing,
{EMNLP} 2008, Proceedings of the Conference, 25-27 October 2008, Honolulu,
Hawaii, USA, {A} meeting of SIGDAT, a Special Interest Group of the
{ACL}},
pages = {1070--1079},
publisher = {{ACL}},
year = {2008},
url = {https://aclanthology.org/D08-1112/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/emnlp/SettlesC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ilp/Craven08,
author = {Mark Craven},
editor = {Filip Zelezn{\'{y}} and
Nada Lavrac},
title = {Learning Expressive Models of Gene Regulation},
booktitle = {Inductive Logic Programming, 18th International Conference, {ILP}
2008, Prague, Czech Republic, September 10-12, 2008, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5194},
pages = {4},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-85928-4\_4},
doi = {10.1007/978-3-540-85928-4\_4},
timestamp = {Tue, 14 May 2019 10:00:36 +0200},
biburl = {https://dblp.org/rec/conf/ilp/Craven08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/uai/NotoC08,
author = {Keith Noto and
Mark Craven},
editor = {David A. McAllester and
Petri Myllym{\"{a}}ki},
title = {Learning Hidden Markov Models for Regression using Path Aggregation},
booktitle = {{UAI} 2008, Proceedings of the 24th Conference in Uncertainty in Artificial
Intelligence, Helsinki, Finland, July 9-12, 2008},
pages = {444--451},
publisher = {{AUAI} Press},
year = {2008},
url = {https://dslpitt.org/uai/displayArticleDetails.jsp?mmnu=1\&\#38;smnu=2\&\#38;article\_id=1339\&\#38;proceeding\_id=24},
timestamp = {Wed, 03 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/uai/NotoC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/wob/2008,
editor = {Ana L. C. Bazzan and
Mark Craven and
Nat{\'{a}}lia Florencio Martins},
title = {Advances in Bioinformatics and Computational Biology, Third Brazilian
Symposium on Bioinformatics, {BSB} 2008, Santo Andr{\'{e}}, Brazil,
August 28-30, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5167},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-85557-6},
doi = {10.1007/978-3-540-85557-6},
isbn = {978-3-540-85556-9},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wob/2008.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NotoC07,
author = {Keith Noto and
Mark Craven},
title = {Learning probabilistic models of \emph{cis}-regulatory modules that
represent logical and spatial aspects},
journal = {Bioinform.},
volume = {23},
number = {2},
pages = {156--162},
year = {2007},
url = {https://doi.org/10.1093/bioinformatics/btl319},
doi = {10.1093/BIOINFORMATICS/BTL319},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NotoC07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/PanDBC07,
author = {Yue Pan and
Tim Durfee and
Joseph Bockhorst and
Mark Craven},
title = {Connecting quantitative regulatory-network models to the genome},
booktitle = {Proceedings 15th International Conference on Intelligent Systems for
Molecular Biology {(ISMB)} {\&} 6th European Conference on Computational
Biology (ECCB), Vienna, Austria, July 21-25, 2007},
pages = {367--376},
year = {2007},
url = {https://doi.org/10.1093/bioinformatics/btm228},
doi = {10.1093/BIOINFORMATICS/BTM228},
timestamp = {Sat, 07 Sep 2019 11:59:25 +0200},
biburl = {https://dblp.org/rec/conf/ismb/PanDBC07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/SettlesCR07,
author = {Burr Settles and
Mark Craven and
Soumya Ray},
editor = {John C. Platt and
Daphne Koller and
Yoram Singer and
Sam T. Roweis},
title = {Multiple-Instance Active Learning},
booktitle = {Advances in Neural Information Processing Systems 20, Proceedings
of the Twenty-First Annual Conference on Neural Information Processing
Systems, Vancouver, British Columbia, Canada, December 3-6, 2007},
pages = {1289--1296},
publisher = {Curran Associates, Inc.},
year = {2007},
url = {https://proceedings.neurips.cc/paper/2007/hash/a1519de5b5d44b31a01de013b9b51a80-Abstract.html},
timestamp = {Mon, 16 May 2022 15:41:51 +0200},
biburl = {https://dblp.org/rec/conf/nips/SettlesCR07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NotoC06,
author = {Keith Noto and
Mark Craven},
title = {A specialized learner for inferring structured cis-regulatory modules},
journal = {{BMC} Bioinform.},
volume = {7},
pages = {528},
year = {2006},
url = {https://doi.org/10.1186/1471-2105-7-528},
doi = {10.1186/1471-2105-7-528},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NotoC06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/trec/GoldbergAGSZC06,
author = {Andrew B. Goldberg and
David Andrzejewski and
Jurgen Van Gael and
Burr Settles and
Xiaojin Zhu and
Mark Craven},
editor = {Ellen M. Voorhees and
Lori P. Buckland},
title = {Ranking Biomedical Passages for Relevance and Diversity: University
of Wisconsin, Madison at {TREC} Genomics 2006},
booktitle = {Proceedings of the Fifteenth Text REtrieval Conference, {TREC} 2006,
Gaithersburg, Maryland, USA, November 14-17, 2006},
series = {{NIST} Special Publication},
volume = {500-272},
publisher = {National Institute of Standards and Technology {(NIST)}},
year = {2006},
url = {http://trec.nist.gov/pubs/trec15/papers/uwisconsin.geo.final.pdf},
timestamp = {Wed, 07 Jul 2021 16:44:22 +0200},
biburl = {https://dblp.org/rec/conf/trec/GoldbergAGSZC06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/kdd/2006,
editor = {Tina Eliassi{-}Rad and
Lyle H. Ungar and
Mark Craven and
Dimitrios Gunopulos},
title = {Proceedings of the Twelfth {ACM} {SIGKDD} International Conference
on Knowledge Discovery and Data Mining, Philadelphia, PA, USA, August
20-23, 2006},
publisher = {{ACM}},
year = {2006},
isbn = {1-59593-339-5},
timestamp = {Wed, 20 Dec 2006 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/kdd/2006.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RayC05,
author = {Soumya Ray and
Mark Craven},
title = {Learning Statistical Models for Annotating Proteins with Function
Information using Biomedical Text},
journal = {{BMC} Bioinform.},
volume = {6},
number = {{S-1}},
year = {2005},
url = {https://doi.org/10.1186/1471-2105-6-S1-S18},
doi = {10.1186/1471-2105-6-S1-S18},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RayC05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icml/RayC05,
author = {Soumya Ray and
Mark Craven},
editor = {Luc De Raedt and
Stefan Wrobel},
title = {Supervised versus multiple instance learning: an empirical comparison},
booktitle = {Machine Learning, Proceedings of the Twenty-Second International Conference
{(ICML} 2005), Bonn, Germany, August 7-11, 2005},
series = {{ACM} International Conference Proceeding Series},
volume = {119},
pages = {697--704},
publisher = {{ACM}},
year = {2005},
url = {https://doi.org/10.1145/1102351.1102439},
doi = {10.1145/1102351.1102439},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icml/RayC05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/trec/BrowSC05,
author = {Thomas Brow and
Burr Settles and
Mark Craven},
editor = {Ellen M. Voorhees and
Lori P. Buckland},
title = {Classifying Biomedical Articles by Making Localized Decisions},
booktitle = {Proceedings of the Fourteenth Text REtrieval Conference, {TREC} 2005,
Gaithersburg, Maryland, USA, November 15-18, 2005},
series = {{NIST} Special Publication},
volume = {500-266},
publisher = {National Institute of Standards and Technology {(NIST)}},
year = {2005},
url = {http://trec.nist.gov/pubs/trec14/papers/uwisconsin.geo.pdf},
timestamp = {Wed, 07 Jul 2021 16:44:22 +0200},
biburl = {https://dblp.org/rec/conf/trec/BrowSC05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/csb/DarlingMCP04,
author = {Aaron E. Darling and
Bob Mau and
Mark Craven and
Nicole T. Perna},
title = {Multiple Alignment of Rearranged Genomes},
booktitle = {3rd International {IEEE} Computer Society Computational Systems Bioinformatics
Conference, {CSB} 2004, Stanford, CA, USA, August 16-19, 2004},
pages = {738--739},
publisher = {{IEEE} Computer Society},
year = {2004},
url = {https://doi.org/10.1109/CSB.2004.1332564},
doi = {10.1109/CSB.2004.1332564},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/csb/DarlingMCP04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/BockhorstC04,
author = {Joseph Bockhorst and
Mark Craven},
title = {Markov Networks for Detecting Overalpping Elements in Sequence Data},
booktitle = {Advances in Neural Information Processing Systems 17 [Neural Information
Processing Systems, {NIPS} 2004, December 13-18, 2004, Vancouver,
British Columbia, Canada]},
pages = {193--200},
year = {2004},
url = {https://proceedings.neurips.cc/paper/2004/hash/92a0e7a415d64ebafcb16a8ca817cde4-Abstract.html},
timestamp = {Mon, 16 May 2022 15:41:51 +0200},
biburl = {https://dblp.org/rec/conf/nips/BockhorstC04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/NotoC04,
author = {Keith Noto and
Mark Craven},
editor = {Eleazar Eskin and
Christopher T. Workman},
title = {Learning Regulatory Network Models that Represent Regulator States
and Roles},
booktitle = {Regulatory Genomics, {RECOMB} 2004 International Workshop, {RRG} 2004,
San Diego, CA, USA, March 26-27, 2004, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {3318},
pages = {52--64},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-32280-1\_6},
doi = {10.1007/978-3-540-32280-1\_6},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/NotoC04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/trec/SettlesC04,
author = {Burr Settles and
Mark Craven},
editor = {Ellen M. Voorhees and
Lori P. Buckland},
title = {Exploiting Zone Information, Syntactic Rules, and Informative Terms
in Gene Ontology Annotation of Biomedical Documents},
booktitle = {Proceedings of the Thirteenth Text REtrieval Conference, {TREC} 2004,
Gaithersburg, Maryland, USA, November 16-19, 2004},
series = {{NIST} Special Publication},
volume = {500-261},
publisher = {National Institute of Standards and Technology {(NIST)}},
year = {2004},
url = {http://trec.nist.gov/pubs/trec13/papers/uwisconsin.geo.pdf},
timestamp = {Wed, 07 Jul 2021 16:44:22 +0200},
biburl = {https://dblp.org/rec/conf/trec/SettlesC04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/sigkdd/PageC03,
author = {David Page and
Mark Craven},
title = {Biological applications of multi-relational data mining},
journal = {{SIGKDD} Explor.},
volume = {5},
number = {1},
pages = {69--79},
year = {2003},
url = {https://doi.org/10.1145/959242.959250},
doi = {10.1145/959242.959250},
timestamp = {Tue, 29 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/sigkdd/PageC03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ijcai/SkounakisCR03,
author = {Marios Skounakis and
Mark Craven and
Soumya Ray},
editor = {Georg Gottlob and
Toby Walsh},
title = {Hierarchical Hidden Markov Models for Information Extraction},
booktitle = {IJCAI-03, Proceedings of the Eighteenth International Joint Conference
on Artificial Intelligence, Acapulco, Mexico, August 9-15, 2003},
pages = {427--433},
publisher = {Morgan Kaufmann},
year = {2003},
url = {http://ijcai.org/Proceedings/03/Papers/064.pdf},
timestamp = {Tue, 20 Aug 2019 16:18:41 +0200},
biburl = {https://dblp.org/rec/conf/ijcai/SkounakisCR03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/BockhorstQGLBC03,
author = {Joseph Bockhorst and
Yu Qiu and
Jeremy D. Glasner and
Mingzhu Liu and
Frederick R. Blattner and
Mark Craven},
title = {Predicting bacterial transcription units using sequence and expression
data},
booktitle = {Proceedings of the Eleventh International Conference on Intelligent
Systems for Molecular Biology, June 29 - July 3, 2003, Brisbane, Australia},
pages = {34--43},
year = {2003},
url = {http://bioinformatics.oupjournals.org/cgi/content/abstract/19/suppl\_1/i34?etoc},
timestamp = {Tue, 15 Jul 2003 14:30:05 +0200},
biburl = {https://dblp.org/rec/conf/ismb/BockhorstQGLBC03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/kdd/SkounakisC03,
author = {Marios Skounakis and
Mark Craven},
editor = {Mohammed Javeed Zaki and
Jason Tsong{-}Li Wang and
Hannu Toivonen},
title = {Evidence combination in biomedical natural-language processing},
booktitle = {Proceedings of the 3nd {ACM} {SIGKDD} Workshop on Data Mining in Bioinformatics
{(BIOKDD} 2003), August 27th, 2003, Washington, DC, {USA}},
pages = {25--32},
year = {2003},
url = {http://www.cs.rpi.edu/\%7Ezaki/BIOKDD03/proceedings/5-skounakis.pdf},
timestamp = {Wed, 20 Aug 2003 08:22:52 +0200},
biburl = {https://dblp.org/rec/conf/kdd/SkounakisC03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/sigkdd/Craven02,
author = {Mark Craven},
title = {The Genomics of a Signaling Pathway: {A} {KDD} Cup Challenge Task},
journal = {{SIGKDD} Explor.},
volume = {4},
number = {2},
pages = {97--98},
year = {2002},
url = {https://doi.org/10.1145/772862.772877},
doi = {10.1145/772862.772877},
timestamp = {Tue, 29 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/sigkdd/Craven02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icml/BockhorstC02,
author = {Joseph Bockhorst and
Mark Craven},
editor = {Claude Sammut and
Achim G. Hoffmann},
title = {Exploiting Relations Among Concepts to Acquire Weakly Labeled Training
Data},
booktitle = {Machine Learning, Proceedings of the Nineteenth International Conference
{(ICML} 2002), University of New South Wales, Sydney, Australia, July
8-12, 2002},
pages = {43--50},
publisher = {Morgan Kaufmann},
year = {2002},
timestamp = {Tue, 26 Nov 2002 10:58:27 +0100},
biburl = {https://dblp.org/rec/conf/icml/BockhorstC02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ml/CravenS01,
author = {Mark Craven and
Se{\'{a}}n Slattery},
title = {Relational Learning with Statistical Predicate Invention: Better Models
for Hypertext},
journal = {Mach. Learn.},
volume = {43},
number = {1/2},
pages = {97--119},
year = {2001},
url = {https://doi.org/10.1023/A:1007676901476},
doi = {10.1023/A:1007676901476},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ml/CravenS01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ijcai/RayC01,
author = {Soumya Ray and
Mark Craven},
editor = {Bernhard Nebel},
title = {Representing Sentence Structure in Hidden Markov Models for Information
Extraction},
booktitle = {Proceedings of the Seventeenth International Joint Conference on Artificial
Intelligence, {IJCAI} 2001, Seattle, Washington, USA, August 4-10,
2001},
pages = {1273--1279},
publisher = {Morgan Kaufmann},
year = {2001},
timestamp = {Tue, 20 Aug 2019 16:18:14 +0200},
biburl = {https://dblp.org/rec/conf/ijcai/RayC01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ijcai/BockhorstC01,
author = {Joseph Bockhorst and
Mark Craven},
editor = {Bernhard Nebel},
title = {Refining the Structure of a Stochastic Context-Free Grammar},
booktitle = {Proceedings of the Seventeenth International Joint Conference on Artificial
Intelligence, {IJCAI} 2001, Seattle, Washington, USA, August 4-10,
2001},
pages = {1315--1322},
publisher = {Morgan Kaufmann},
year = {2001},
timestamp = {Fri, 23 May 2003 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ijcai/BockhorstC01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ai/CravenDFMMNS00,
author = {Mark Craven and
Dan DiPasquo and
Dayne Freitag and
Andrew McCallum and
Tom M. Mitchell and
Kamal Nigam and
Se{\'{a}}n Slattery},
title = {Learning to construct knowledge bases from the World Wide Web},
journal = {Artif. Intell.},
volume = {118},
number = {1-2},
pages = {69--113},
year = {2000},
url = {https://doi.org/10.1016/S0004-3702(00)00004-7},
doi = {10.1016/S0004-3702(00)00004-7},
timestamp = {Sat, 27 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ai/CravenDFMMNS00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/CravenK99,
author = {Mark Craven and
Johan Kumlien},
editor = {Thomas Lengauer and
Reinhard Schneider and
Peer Bork and
Douglas L. Brutlag and
Janice I. Glasgow and
Hans{-}Werner Mewes and
Ralf Zimmer},
title = {Constructing Biological Knowledge Bases by Extracting Information
from Text Sources},
booktitle = {Proceedings of the Seventh International Conference on Intelligent
Systems for Molecular Biology, August 6-10, 1999, Heidelberg, Germany},
pages = {77--86},
publisher = {{AAAI}},
year = {1999},
url = {http://www.aaai.org/Library/ISMB/1999/ismb99-010.php},
timestamp = {Mon, 24 Jun 2013 09:48:15 +0200},
biburl = {https://dblp.org/rec/conf/ismb/CravenK99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aaai/CravenFMMNS98,
author = {Mark Craven and
Dan DiPasquo and
Dayne Freitag and
Andrew McCallum and
Tom M. Mitchell and
Kamal Nigam and
Se{\'{a}}n Slattery},
editor = {Jack Mostow and
Chuck Rich},
title = {Learning to Extract Symbolic Knowledge from the World Wide Web},
booktitle = {Proceedings of the Fifteenth National Conference on Artificial Intelligence
and Tenth Innovative Applications of Artificial Intelligence Conference,
{AAAI} 98, {IAAI} 98, July 26-30, 1998, Madison, Wisconsin, {USA}},
pages = {509--516},
publisher = {{AAAI} Press / The {MIT} Press},
year = {1998},
url = {http://www.aaai.org/Library/AAAI/1998/aaai98-072.php},
timestamp = {Tue, 05 Sep 2023 09:10:47 +0200},
biburl = {https://dblp.org/rec/conf/aaai/CravenFMMNS98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ecml/CravenSN98,
author = {Mark Craven and
Se{\'{a}}n Slattery and
Kamal Nigam},
editor = {Claire Nedellec and
C{\'{e}}line Rouveirol},
title = {First-Order Learning for Web Mining},
booktitle = {Machine Learning: ECML-98, 10th European Conference on Machine Learning,
Chemnitz, Germany, April 21-23, 1998, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {1398},
pages = {250--255},
publisher = {Springer},
year = {1998},
url = {https://doi.org/10.1007/BFb0026695},
doi = {10.1007/BFB0026695},
timestamp = {Tue, 14 May 2019 10:00:54 +0200},
biburl = {https://dblp.org/rec/conf/ecml/CravenSN98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ilp/SlatteryC98,
author = {Se{\'{a}}n Slattery and
Mark Craven},
editor = {David Page},
title = {Combining Statistical and Relational Methods for Learning in Hypertext
Domains},
booktitle = {Inductive Logic Programming, 8th International Workshop, ILP-98, Madison,
Wisconsin, USA, July 22-24, 1998, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {1446},
pages = {38--52},
publisher = {Springer},
year = {1998},
url = {https://doi.org/10.1007/BFb0027309},
doi = {10.1007/BFB0027309},
timestamp = {Tue, 14 May 2019 10:00:36 +0200},
biburl = {https://dblp.org/rec/conf/ilp/SlatteryC98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/CravenMHU95,
author = {Mark Craven and
Richard J. Mural and
Loren J. Hauser and
Edward C. Uberbacher},
editor = {Christopher J. Rawlings and
Dominic A. Clark and
Russ B. Altman and
Lawrence Hunter and
Thomas Lengauer and
Shoshana J. Wodak},
title = {Predicting Protein Folding Classes without Overly Relying on Homology},
booktitle = {Proceedings of the Third International Conference on Intelligent Systems
for Molecular Biology, Cambridge, United Kingdom, July 16-19, 1995},
pages = {98--106},
publisher = {{AAAI}},
year = {1995},
url = {http://www.aaai.org/Library/ISMB/1995/ismb95-012.php},
timestamp = {Thu, 13 Dec 2012 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/CravenMHU95.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/JacksonC95,
author = {Jeffrey C. Jackson and
Mark Craven},
editor = {David S. Touretzky and
Michael Mozer and
Michael E. Hasselmo},
title = {Learning Sparse Perceptrons},
booktitle = {Advances in Neural Information Processing Systems 8, NIPS, Denver,
CO, USA, November 27-30, 1995},
pages = {654--660},
publisher = {{MIT} Press},
year = {1995},
url = {http://papers.nips.cc/paper/1076-learning-sparse-perceptrons},
timestamp = {Mon, 16 May 2022 15:41:51 +0200},
biburl = {https://dblp.org/rec/conf/nips/JacksonC95.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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