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ORCIDBibTeX records: Richard Durbin
@article{DBLP:journals/bioinformatics/ZhouMD23,
author = {Chenxi Zhou and
Shane A. McCarthy and
Richard Durbin},
title = {YaHS: yet another Hi-C scaffolding tool},
journal = {Bioinform.},
volume = {39},
number = {1},
year = {2023},
url = {https://doi.org/10.1093/bioinformatics/btac808},
doi = {10.1093/BIOINFORMATICS/BTAC808},
timestamp = {Tue, 28 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhouMD23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/UlianoSilvaFKBMHHDRKHWTGLLBMHBFAT23,
author = {Marcela Uliano{-}Silva and
Jo{\~{a}}o Gabriel R. N. Ferreira and
Ksenia Krasheninnikova and
Mark L. Blaxter and
Nova Mieszkowska and
Neil Hall and
Peter Holland and
Richard Durbin and
Thomas Richards and
Paul J. Kersey and
Peter Hollingsworth and
Willie Wilson and
Alex Twyford and
Ester Gaya and
Mara Lawniczak and
Owen Lewis and
Gavin Broad and
Fergal Martin and
Michelle Hart and
Ian Barnes and
Giulio Formenti and
Linelle Abueg and
James W. Torrance and
Eugene W. Myers and
Shane A. McCarthy},
title = {MitoHiFi: a python pipeline for mitochondrial genome assembly from
PacBio high fidelity reads},
journal = {{BMC} Bioinform.},
volume = {24},
number = {1},
pages = {288},
year = {2023},
url = {https://doi.org/10.1186/s12859-023-05385-y},
doi = {10.1186/S12859-023-05385-Y},
timestamp = {Fri, 18 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/UlianoSilvaFKBMHHDRKHWTGLLBMHBFAT23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GuanMNWWD21,
author = {Dengfeng Guan and
Shane A. McCarthy and
Zemin Ning and
Guohua Wang and
Yadong Wang and
Richard Durbin},
title = {Efficient iterative Hi-C scaffolder based on N-best neighbors},
journal = {{BMC} Bioinform.},
volume = {22},
number = {1},
pages = {569},
year = {2021},
url = {https://doi.org/10.1186/s12859-021-04453-5},
doi = {10.1186/S12859-021-04453-5},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/GuanMNWWD21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GuanMNWWD21a,
author = {Dengfeng Guan and
Shane A. McCarthy and
Zemin Ning and
Guohua Wang and
Yadong Wang and
Richard Durbin},
title = {Correction to: Efficient iterative Hi-C scaffolder based on N-best
neighbors},
journal = {{BMC} Bioinform.},
volume = {22},
number = {1},
pages = {612},
year = {2021},
url = {https://doi.org/10.1186/s12859-021-04537-2},
doi = {10.1186/S12859-021-04537-2},
timestamp = {Thu, 11 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/GuanMNWWD21a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SirenGNPD20,
author = {Jouni Sir{\'{e}}n and
Erik Garrison and
Adam M. Novak and
Benedict Paten and
Richard Durbin},
title = {Haplotype-aware graph indexes},
journal = {Bioinform.},
volume = {36},
number = {2},
pages = {400--407},
year = {2020},
url = {https://doi.org/10.1093/bioinformatics/btz575},
doi = {10.1093/BIOINFORMATICS/BTZ575},
timestamp = {Fri, 14 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SirenGNPD20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GargA0SDC20,
author = {Shilpa Garg and
John Aach and
Heng Li and
Isaac Sebenius and
Richard Durbin and
George M. Church},
title = {A haplotype-aware de novo assembly of related individuals using pedigree
sequence graph},
journal = {Bioinform.},
volume = {36},
number = {8},
pages = {2385--2392},
year = {2020},
url = {https://doi.org/10.1093/bioinformatics/btz942},
doi = {10.1093/BIOINFORMATICS/BTZ942},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GargA0SDC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GuanMWHWD20,
author = {Dengfeng Guan and
Shane A. McCarthy and
Jonathan Wood and
Kerstin Howe and
Yadong Wang and
Richard Durbin},
title = {Identifying and removing haplotypic duplication in primary genome
assemblies},
journal = {Bioinform.},
volume = {36},
number = {9},
pages = {2896--2898},
year = {2020},
url = {https://doi.org/10.1093/bioinformatics/btaa025},
doi = {10.1093/BIOINFORMATICS/BTAA025},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GuanMWHWD20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BonfieldMD19,
author = {James K. Bonfield and
Shane A. McCarthy and
Richard Durbin},
title = {Crumble: reference free lossy compression of sequence quality values},
journal = {Bioinform.},
volume = {35},
number = {2},
pages = {337--339},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty608},
doi = {10.1093/BIOINFORMATICS/BTY608},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BonfieldMD19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DawsonWRYBGCSRL19,
author = {Eric T. Dawson and
Sarah Wagner and
David Roberson and
Meredith Yeager and
Joseph Boland and
Erik Garrison and
Stephen J. Chanock and
Mark Schiffman and
Tina Raine{-}Bennett and
Thomas Lorey and
Phillip E. Castle and
Lisa Mirabello and
Richard Durbin},
title = {Viral coinfection analysis using a MinHash toolkit},
journal = {{BMC} Bioinform.},
volume = {20},
number = {1},
pages = {389:1--389:10},
year = {2019},
url = {https://doi.org/10.1186/s12859-019-2918-y},
doi = {10.1186/S12859-019-2918-Y},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DawsonWRYBGCSRL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jossw/DawsonD19,
author = {Eric T. Dawson and
Richard Durbin},
title = {GFAKluge: {A} {C++} library and command line utilities for the Graphical
Fragment Assembly formats},
journal = {J. Open Source Softw.},
volume = {4},
number = {33},
pages = {1083},
year = {2019},
url = {https://doi.org/10.21105/joss.01083},
doi = {10.21105/JOSS.01083},
timestamp = {Sat, 25 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jossw/DawsonD19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GargRNGDM18,
author = {Shilpa Garg and
Mikko Rautiainen and
Adam M. Novak and
Erik Garrison and
Richard Durbin and
Tobias Marschall},
title = {A graph-based approach to diploid genome assembly},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i105--i114},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty279},
doi = {10.1093/BIOINFORMATICS/BTY279},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GargRNGDM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SirenGNPD18,
author = {Jouni Sir{\'{e}}n and
Erik Garrison and
Adam M. Novak and
Benedict Paten and
Richard Durbin},
editor = {Laxmi Parida and
Esko Ukkonen},
title = {Haplotype-aware graph indexes},
booktitle = {18th International Workshop on Algorithms in Bioinformatics, {WABI}
2018, August 20-22, 2018, Helsinki, Finland},
series = {LIPIcs},
volume = {113},
pages = {4:1--4:13},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2018},
url = {https://doi.org/10.4230/LIPIcs.WABI.2018.4},
doi = {10.4230/LIPICS.WABI.2018.4},
timestamp = {Tue, 11 Feb 2020 15:52:14 +0100},
biburl = {https://dblp.org/rec/conf/wabi/SirenGNPD18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1805-03834,
author = {Jouni Sir{\'{e}}n and
Erik Garrison and
Adam M. Novak and
Benedict Paten and
Richard Durbin},
title = {Haplotype-aware graph indexes},
journal = {CoRR},
volume = {abs/1805.03834},
year = {2018},
url = {http://arxiv.org/abs/1805.03834},
eprinttype = {arXiv},
eprint = {1805.03834},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1805-03834.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NarasimhanDSXTD16,
author = {Vagheesh Narasimhan and
Petr Danecek and
Aylwyn Scally and
Yali Xue and
Chris Tyler{-}Smith and
Richard Durbin},
title = {BCFtools/RoH: a hidden Markov model approach for detecting autozygosity
from next-generation sequencing data},
journal = {Bioinform.},
volume = {32},
number = {11},
pages = {1749--1751},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw044},
doi = {10.1093/BIOINFORMATICS/BTW044},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NarasimhanDSXTD16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nature/MalaspinasWMSLA16,
author = {Anna{-}Sapfo Malaspinas and
Michael C. Westaway and
Craig Muller and
Vitor C. Sousa and
Oscar Lao and
Isabel Alves and
Anders Bergstr{\"{o}}m and
Georgios Athanasiadis and
Jade Yu Cheng and
Jacob E. Crawford and
Tim H. Heupink and
Enrico Macholdt and
Stephan Peischl and
Simon Rasmussen and
Stephan Schiffels and
Sankar Subramanian and
Joanne L. Wright and
Anders Albrechtsen and
Chiara Barbieri and
Isabelle Dupanloup and
Anders Eriksson and
Ashot Margaryan and
Ida Moltke and
Irina Pugach and
Thorfinn Sand Korneliussen and
Ivan P. Levkivskyi and
Jos{\'{e}} V{\'{\i}}ctor Moreno{-}Mayar and
Shengyu Ni and
Fernando Racimo and
Martin Sikora and
Yali Xue and
Farhang A. Aghakhanian and
Nicolas Brucato and
S{\o}ren Brunak and
Paula F. Campos and
Warren Clark and
Sturla Ellingv{\aa}g and
Gudjugudju Fourmile and
Pascale Gerbault and
Darren Injie and
George Koki and
Matthew Leavesley and
Betty Logan and
Aubrey Lynch and
Elizabeth A. Matisoo{-}Smith and
Peter J. McAllister and
Alexander J. Mentzer and
Mait Metspalu and
Andrea B. Migliano and
Les Murgha and
Maude E. Phipps and
William Pomat and
Doc Reynolds and
Francois{-}Xavier Ricaut and
Peter Siba and
Mark G. Thomas and
Thomas Wales and
Colleen Ma'run Wall and
Stephen J. Oppenheimer and
Chris Tyler{-}Smith and
Richard Durbin and
Joe Dortch and
Andrea Manica and
Mikkel H. Schierup and
Robert A. Foley and
Marta Miraz{\'{o}}n Lahr and
Claire Bowern and
Jeffrey D. Wall and
Thomas Mailund and
Mark Stoneking and
Rasmus Nielsen and
Manjinder S. Sandhu and
Laurent Excoffier and
David M. Lambert and
Eske Willerslev},
title = {A genomic history of Aboriginal Australia},
journal = {Nat.},
volume = {538},
number = {7624},
pages = {207--214},
year = {2016},
url = {https://doi.org/10.1038/nature18299},
doi = {10.1038/NATURE18299},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nature/MalaspinasWMSLA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Durbin14,
author = {Richard Durbin},
title = {Efficient haplotype matching and storage using the positional Burrows-Wheeler
transform {(PBWT)}},
journal = {Bioinform.},
volume = {30},
number = {9},
pages = {1266--1272},
year = {2014},
url = {https://doi.org/10.1093/bioinformatics/btu014},
doi = {10.1093/BIOINFORMATICS/BTU014},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Durbin14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/FlicekAB12,
author = {Paul Flicek and
M. Ridwan Amode and
Daniel Barrell and
Kathryn Beal and
Simon Brent and
Denise Carvalho{-}Silva and
Peter Clapham and
Guy Coates and
Susan Fairley and
Stephen Fitzgerald and
Laurent Gil and
Leo Gordon and
Maurice Hendrix and
Thibaut Hourlier and
Nathan Johnson and
Andreas K{\"{a}}h{\"{a}}ri and
Damian Keefe and
Stephen Keenan and
Rhoda Kinsella and
Monika Komorowska and
Gautier Koscielny and
Eugene Kulesha and
Pontus Larsson and
Ian Longden and
William M. McLaren and
Matthieu Muffato and
Bert Overduin and
Miguel Pignatelli and
Bethan Pritchard and
Harpreet Singh Riat and
Graham R. S. Ritchie and
Magali Ruffier and
Michael Schuster and
Daniel Sobral and
Y. Amy Tang and
Kieron R. Taylor and
Stephen J. Trevanion and
Jana Vandrovcova and
Simon White and
Mark Wilson and
Steven P. Wilder and
Bronwen L. Aken and
Ewan Birney and
Fiona Cunningham and
Ian Dunham and
Richard Durbin and
Xos{\'{e}} M. Fern{\'{a}}ndez{-}Su{\'{a}}rez and
Jennifer L. Harrow and
Javier Herrero and
Tim J. P. Hubbard and
Anne Parker and
Glenn Proctor and
Giulietta Spudich and
Jan Vogel and
Andy Yates and
Amonida Zadissa and
Stephen M. J. Searle},
title = {Ensembl 2012},
journal = {Nucleic Acids Res.},
volume = {40},
number = {Database-Issue},
pages = {84--90},
year = {2012},
url = {https://doi.org/10.1093/nar/gkr991},
doi = {10.1093/NAR/GKR991},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/FlicekAB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/YookHBCCCDCDFGGHKKLLMNNOPRRSSSTAWWWHBDKSSS12,
author = {Karen Yook and
Todd W. Harris and
Tamberlyn Bieri and
Abigail Cabunoc and
Juancarlos Chan and
Wen J. Chen and
Paul Davis and
Norie De La Cruz and
Adrian Duong and
Ruihua Fang and
Uma Ganesan and
Christian A. Grove and
Kevin L. Howe and
Snehalata Kadam and
Ranjana Kishore and
Raymond Y. N. Lee and
Yuling Li and
Hans{-}Michael M{\"{u}}ller and
Cecilia Nakamura and
Bill Nash and
Philip Ozersky and
Michael Paulini and
Daniela Raciti and
Arun Rangarajan and
Gary Schindelman and
Xiaoqi Shi and
Erich M. Schwarz and
Mary Ann Tuli and
Kimberly Van Auken and
Daniel Wang and
Xiaodong Wang and
Gary Williams and
Jonathan Hodgkin and
Matthew Berriman and
Richard Durbin and
Paul J. Kersey and
John Spieth and
Lincoln Stein and
Paul W. Sternberg},
title = {WormBase 2012: more genomes, more data, new website},
journal = {Nucleic Acids Res.},
volume = {40},
number = {Database-Issue},
pages = {735--741},
year = {2012},
url = {https://doi.org/10.1093/nar/gkr954},
doi = {10.1093/NAR/GKR954},
timestamp = {Mon, 08 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/YookHBCCCDCDFGGHKKLLMNNOPRRSSSTAWWWHBDKSSS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DanecekAAABDHLMSMD11,
author = {Petr Danecek and
Adam Auton and
Gon{\c{c}}alo R. Abecasis and
Cornelis A. Albers and
Eric Banks and
Mark A. DePristo and
Robert E. Handsaker and
Gerton Lunter and
Gabor T. Marth and
Stephen T. Sherry and
Gilean McVean and
Richard Durbin},
title = {The variant call format and VCFtools},
journal = {Bioinform.},
volume = {27},
number = {15},
pages = {2156--2158},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr330},
doi = {10.1093/BIOINFORMATICS/BTR330},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DanecekAAABDHLMSMD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/FlicekAB11,
author = {Paul Flicek and
M. Ridwan Amode and
Daniel Barrell and
Kathryn Beal and
Simon Brent and
Yuan Chen and
Peter Clapham and
Guy Coates and
Susan Fairley and
Stephen Fitzgerald and
Leo Gordon and
Maurice Hendrix and
Thibaut Hourlier and
Nathan Johnson and
Andreas K{\"{a}}h{\"{a}}ri and
Damian Keefe and
Stephen Keenan and
Rhoda Kinsella and
Felix Kokocinski and
Eugene Kulesha and
Pontus Larsson and
Ian Longden and
William M. McLaren and
Bert Overduin and
Bethan Pritchard and
Harpreet Singh Riat and
Daniel Rios and
Graham R. S. Ritchie and
Magali Ruffier and
Michael Schuster and
Daniel Sobral and
Giulietta Spudich and
Y. Amy Tang and
Stephen J. Trevanion and
Jana Vandrovcova and
Albert J. Vilella and
Simon White and
Steven P. Wilder and
Amonida Zadissa and
Jorge Zamora and
Bronwen L. Aken and
Ewan Birney and
Fiona Cunningham and
Ian Dunham and
Richard Durbin and
Xos{\'{e}} M. Fern{\'{a}}ndez{-}Su{\'{a}}rez and
Javier Herrero and
Tim J. P. Hubbard and
Anne Parker and
Glenn Proctor and
Jan Vogel and
Stephen M. J. Searle},
title = {Ensembl 2011},
journal = {Nucleic Acids Res.},
volume = {39},
number = {Database-Issue},
pages = {800--806},
year = {2011},
url = {https://doi.org/10.1093/nar/gkq1064},
doi = {10.1093/NAR/GKQ1064},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/FlicekAB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SimpsonMAD10,
author = {Jared T. Simpson and
Rebecca E. McIntyre and
David J. Adams and
Richard Durbin},
title = {Copy number variant detection in inbred strains from short read sequence
data},
journal = {Bioinform.},
volume = {26},
number = {4},
pages = {565--567},
year = {2010},
url = {https://doi.org/10.1093/bioinformatics/btp693},
doi = {10.1093/BIOINFORMATICS/BTP693},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SimpsonMAD10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiD10,
author = {Heng Li and
Richard Durbin},
title = {Fast and accurate long-read alignment with Burrows-Wheeler transform},
journal = {Bioinform.},
volume = {26},
number = {5},
pages = {589--595},
year = {2010},
url = {https://doi.org/10.1093/bioinformatics/btp698},
doi = {10.1093/BIOINFORMATICS/BTP698},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiD10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SimpsonD10,
author = {Jared T. Simpson and
Richard Durbin},
title = {Efficient construction of an assembly string graph using the FM-index},
journal = {Bioinform.},
volume = {26},
number = {12},
pages = {367--373},
year = {2010},
url = {https://doi.org/10.1093/bioinformatics/btq217},
doi = {10.1093/BIOINFORMATICS/BTQ217},
timestamp = {Tue, 01 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SimpsonD10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HarrisABBCCCDDFFHKLMNOPRRSSTAWWWYDSSS10,
author = {Todd W. Harris and
Igor Antoshechkin and
Tamberlyn Bieri and
Darin Blasiar and
Juancarlos Chan and
Wen J. Chen and
Norie De La Cruz and
Paul Davis and
Margaret J. Duesbury and
Ruihua Fang and
Jolene Fernandes and
Michael Han and
Ranjana Kishore and
Raymond Y. N. Lee and
Hans{-}Michael M{\"{u}}ller and
Cecilia Nakamura and
Philip Ozersky and
Andrei Petcherski and
Arun Rangarajan and
Anthony Rogers and
Gary Schindelman and
Erich M. Schwarz and
Mary Ann Tuli and
Kimberly Van Auken and
Daniel Wang and
Xiaodong Wang and
Gary Williams and
Karen Yook and
Richard Durbin and
Lincoln D. Stein and
John Spieth and
Paul W. Sternberg},
title = {WormBase: a comprehensive resource for nematode research},
journal = {Nucleic Acids Res.},
volume = {38},
number = {Database-Issue},
pages = {463--467},
year = {2010},
url = {https://doi.org/10.1093/nar/gkp952},
doi = {10.1093/NAR/GKP952},
timestamp = {Mon, 08 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HarrisABBCCCDDFFHKLMNOPRRSSTAWWWYDSSS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/FlicekAB10,
author = {Paul Flicek and
Bronwen L. Aken and
Beno{\^{\i}}t Ballester and
Kathryn Beal and
Eugene Bragin and
Simon Brent and
Yuan Chen and
Peter Clapham and
Guy Coates and
Susan Fairley and
Stephen Fitzgerald and
Julio Fernandez{-}Banet and
Leo Gordon and
Stefan Gr{\"{a}}f and
Syed Haider and
Martin Hammond and
Kerstin Howe and
Andrew M. Jenkinson and
Nathan Johnson and
Andreas K{\"{a}}h{\"{a}}ri and
Damian Keefe and
Stephen Keenan and
Rhoda Kinsella and
Felix Kokocinski and
Gautier Koscielny and
Eugene Kulesha and
Daniel Lawson and
Ian Longden and
Tim Massingham and
William M. McLaren and
Karine Megy and
Bert Overduin and
Bethan Pritchard and
Daniel Rios and
Magali Ruffier and
Michael Schuster and
Guy Slater and
Damian Smedley and
Giulietta Spudich and
Y. Amy Tang and
Stephen J. Trevanion and
Albert J. Vilella and
Jan Vogel and
Simon White and
Steven P. Wilder and
Amonida Zadissa and
Ewan Birney and
Fiona Cunningham and
Ian Dunham and
Richard Durbin and
Xos{\'{e}} M. Fern{\'{a}}ndez{-}Su{\'{a}}rez and
Javier Herrero and
Tim J. P. Hubbard and
Anne Parker and
Glenn Proctor and
James A. Smith and
Stephen M. J. Searle},
title = {Ensembl's 10th year},
journal = {Nucleic Acids Res.},
volume = {38},
number = {Database-Issue},
pages = {557--562},
year = {2010},
url = {https://doi.org/10.1093/nar/gkp972},
doi = {10.1093/NAR/GKP972},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/FlicekAB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/SteglePDW10,
author = {Oliver Stegle and
Leopold Parts and
Richard Durbin and
John M. Winn},
title = {A Bayesian Framework to Account for Complex Non-Genetic Factors in
Gene Expression Levels Greatly Increases Power in eQTL Studies},
journal = {PLoS Comput. Biol.},
volume = {6},
number = {5},
year = {2010},
url = {https://doi.org/10.1371/journal.pcbi.1000770},
doi = {10.1371/JOURNAL.PCBI.1000770},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/SteglePDW10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiD09,
author = {Heng Li and
Richard Durbin},
title = {Fast and accurate short read alignment with Burrows-Wheeler transform},
journal = {Bioinform.},
volume = {25},
number = {14},
pages = {1754--1760},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp324},
doi = {10.1093/BIOINFORMATICS/BTP324},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiD09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiHWFRHMAD09,
author = {Heng Li and
Bob Handsaker and
Alec Wysoker and
Tim Fennell and
Jue Ruan and
Nils Homer and
Gabor T. Marth and
Gon{\c{c}}alo R. Abecasis and
Richard Durbin},
title = {The Sequence Alignment/Map format and SAMtools},
journal = {Bioinform.},
volume = {25},
number = {16},
pages = {2078--2079},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp352},
doi = {10.1093/BIOINFORMATICS/BTP352},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiHWFRHMAD09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HubbardAA09,
author = {Tim J. P. Hubbard and
Bronwen L. Aken and
Sarah C. Ayling and
Beno{\^{\i}}t Ballester and
Kathryn Beal and
Eugene Bragin and
Simon Brent and
Yuan Chen and
Peter Clapham and
Laura Clarke and
Guy Coates and
Susan Fairley and
Stephen Fitzgerald and
Julio Fernandez{-}Banet and
Leo Gordon and
Stefan Gr{\"{a}}f and
Syed Haider and
Martin Hammond and
Richard C. G. Holland and
Kevin L. Howe and
Andrew M. Jenkinson and
Nathan Johnson and
Andreas K{\"{a}}h{\"{a}}ri and
Damian Keefe and
Stephen Keenan and
Rhoda Kinsella and
Felix Kokocinski and
Eugene Kulesha and
Daniel Lawson and
Ian Longden and
Karine Megy and
Patrick Meidl and
Bert Overduin and
Anne Parker and
Bethan Pritchard and
Daniel Rios and
Michael Schuster and
Guy Slater and
Damian Smedley and
William Spooner and
Giulietta Spudich and
Stephen J. Trevanion and
Albert J. Vilella and
Jan Vogel and
Simon White and
Steven P. Wilder and
Arek Zadissa and
Ewan Birney and
Fiona Cunningham and
Val Curwen and
Richard Durbin and
Xos{\'{e}} M. Fern{\'{a}}ndez{-}Su{\'{a}}rez and
Javier Herrero and
Arek Kasprzyk and
Glenn Proctor and
James A. Smith and
Stephen M. J. Searle and
Paul Flicek},
title = {Ensembl 2009},
journal = {Nucleic Acids Res.},
volume = {37},
number = {Database-Issue},
pages = {690--697},
year = {2009},
url = {https://doi.org/10.1093/nar/gkn828},
doi = {10.1093/NAR/GKN828},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/HubbardAA09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/RogersABBBCCCDFFHHKLMMNOPSSSTAWWWYDSSS08,
author = {Anthony Rogers and
Igor Antoshechkin and
Tamberlyn Bieri and
Darin Blasiar and
Carol Bastiani and
Payan Canaran and
Juancarlos Chan and
Wen J. Chen and
Paul Davis and
Jolene Fernandes and
Tristan J. Fiedler and
Michael Han and
Todd W. Harris and
Ranjana Kishore and
Raymond Y. N. Lee and
Sheldon J. McKay and
Hans{-}Michael M{\"{u}}ller and
Cecilia Nakamura and
Philip Ozersky and
Andrei Petcherski and
Gary Schindelman and
Erich M. Schwarz and
William Spooner and
Mary Ann Tuli and
Kimberly Van Auken and
Daniel Wang and
Xiaodong Wang and
Gary Williams and
Karen Yook and
Richard Durbin and
Lincoln D. Stein and
John Spieth and
Paul W. Sternberg},
title = {WormBase 2007},
journal = {Nucleic Acids Res.},
volume = {36},
number = {Database-Issue},
pages = {612--617},
year = {2008},
url = {https://doi.org/10.1093/nar/gkm975},
doi = {10.1093/NAR/GKM975},
timestamp = {Mon, 08 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/RogersABBBCCCDFFHHKLMMNOPSSSTAWWWYDSSS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/FlicekAB08,
author = {Paul Flicek and
Bronwen L. Aken and
Kathryn Beal and
Beno{\^{\i}}t Ballester and
Mario C{\'{a}}ccamo and
Yuan Chen and
Laura Clarke and
Guy Coates and
Fiona Cunningham and
Tim Cutts and
Thomas A. Down and
S. C. Dyer and
T. Eyre and
Stephen Fitzgerald and
Julio Fernandez{-}Banet and
Stefan Gr{\"{a}}f and
Syed Haider and
Martin Hammond and
Richard C. G. Holland and
Kevin L. Howe and
Kerstin Howe and
Nathan Johnson and
Andrew M. Jenkinson and
Andreas K{\"{a}}h{\"{a}}ri and
Damian Keefe and
Felix Kokocinski and
Eugene Kulesha and
Daniel Lawson and
Ian Longden and
Karine Megy and
Patrick Meidl and
Bert Overduin and
Anne Parker and
Bethan Pritchard and
Andreas Prlic and
S. Rice and
Daniel Rios and
Michael Schuster and
Ian Sealy and
Guy Slater and
Damian Smedley and
Giulietta Spudich and
Stephen J. Trevanion and
Albert J. Vilella and
Jan Vogel and
Simon White and
M. Wood and
Ewan Birney and
Tony Cox and
Val Curwen and
Richard Durbin and
Xos{\'{e}} M. Fern{\'{a}}ndez{-}Su{\'{a}}rez and
Javier Herrero and
Tim J. P. Hubbard and
Arek Kasprzyk and
Glenn Proctor and
James A. Smith and
Abel Ureta{-}Vidal and
Stephen M. J. Searle},
title = {Ensembl 2008},
journal = {Nucleic Acids Res.},
volume = {36},
number = {Database-Issue},
pages = {707--714},
year = {2008},
url = {https://doi.org/10.1093/nar/gkm988},
doi = {10.1093/NAR/GKM988},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/FlicekAB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/RuanLCCCGHHKLLMQVVUBWD08,
author = {Jue Ruan and
Heng Li and
Zhongzhong Chen and
Avril Coghlan and
Lachlan James M. Coin and
Yiran Guo and
Jean{-}Karim H{\'{e}}rich{\'{e}} and
Yafeng Hu and
Karsten Kristiansen and
Ruiqiang Li and
Tao Liu and
Alan Moses and
Junjie Qin and
S{\o}ren Vang and
Albert J. Vilella and
Abel Ureta{-}Vidal and
Lars Bolund and
Jun Wang and
Richard Durbin},
title = {TreeFam: 2008 Update},
journal = {Nucleic Acids Res.},
volume = {36},
number = {Database-Issue},
pages = {735--740},
year = {2008},
url = {https://doi.org/10.1093/nar/gkm1005},
doi = {10.1093/NAR/GKM1005},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/RuanLCCCGHHKLLMQVVUBWD08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/StegleKDW08,
author = {Oliver Stegle and
Anitha Kannan and
Richard Durbin and
John M. Winn},
editor = {Martin Vingron and
Limsoon Wong},
title = {Accounting for Non-genetic Factors Improves the Power of eQTL Studies},
booktitle = {Research in Computational Molecular Biology, 12th Annual International
Conference, {RECOMB} 2008, Singapore, March 30 - April 2, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4955},
pages = {411--422},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-78839-3\_35},
doi = {10.1007/978-3-540-78839-3\_35},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/StegleKDW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CoghlanD07,
author = {Avril Coghlan and
Richard Durbin},
title = {Genomix: a method for combining gene-finders' predictions, which uses
evolutionary conservation of sequence and intron-exon structure},
journal = {Bioinform.},
volume = {23},
number = {12},
pages = {1468--1475},
year = {2007},
url = {https://doi.org/10.1093/bioinformatics/btm133},
doi = {10.1093/BIOINFORMATICS/BTM133},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CoghlanD07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BieriBOABCCCCDFGHHKLMMNPRRSSSTAWWWDSSS07,
author = {Tamberlyn Bieri and
Darin Blasiar and
Philip Ozersky and
Igor Antoshechkin and
Carol Bastiani and
Payan Canaran and
Juancarlos Chan and
Nansheng Chen and
Wen J. Chen and
Paul Davis and
Tristan J. Fiedler and
Lisa R. Girard and
Michael Han and
Todd W. Harris and
Ranjana Kishore and
Raymond Y. N. Lee and
Sheldon J. McKay and
Hans{-}Michael M{\"{u}}ller and
Cecilia Nakamura and
Andrei Petcherski and
Arun Rangarajan and
Anthony Rogers and
Gary Schindelman and
Erich M. Schwarz and
William Spooner and
Mary Ann Tuli and
Kimberly Van Auken and
Daniel Wang and
Xiaodong Wang and
Gary Williams and
Richard Durbin and
Lincoln D. Stein and
Paul W. Sternberg and
John Spieth},
title = {WormBase: new content and better access},
journal = {Nucleic Acids Res.},
volume = {35},
number = {Database-Issue},
pages = {506--510},
year = {2007},
url = {https://doi.org/10.1093/nar/gkl818},
doi = {10.1093/NAR/GKL818},
timestamp = {Mon, 08 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BieriBOABCCCCDFGHHKLMMNPRRSSSTAWWWDSSS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HubbardAB07,
author = {Tim J. P. Hubbard and
Bronwen L. Aken and
Kathryn Beal and
Beno{\^{\i}}t Ballester and
Mario C{\'{a}}ccamo and
Yuan Chen and
Laura Clarke and
Guy Coates and
Fiona Cunningham and
Tim Cutts and
Thomas A. Down and
S. C. Dyer and
Stephen Fitzgerald and
Julio Fernandez{-}Banet and
Stefan Gr{\"{a}}f and
Syed Haider and
Martin Hammond and
Javier Herrero and
Richard C. G. Holland and
Kevin L. Howe and
Kerstin Howe and
Nathan Johnson and
Andreas K{\"{a}}h{\"{a}}ri and
Damian Keefe and
Felix Kokocinski and
Eugene Kulesha and
Daniel Lawson and
Ian Longden and
Craig Melsopp and
Karine Megy and
Patrick Meidl and
Bert Overduin and
Anne Parker and
Andreas Prlic and
S. Rice and
Daniel Rios and
Michael Schuster and
Ian Sealy and
Jessica Severin and
Guy Slater and
Damian Smedley and
Giulietta Spudich and
Stephen J. Trevanion and
Albert J. Vilella and
Jan Vogel and
Simon White and
M. Wood and
Tony Cox and
Val Curwen and
Richard Durbin and
Xos{\'{e}} M. Fern{\'{a}}ndez{-}Su{\'{a}}rez and
Paul Flicek and
Arek Kasprzyk and
Glenn Proctor and
Stephen M. J. Searle and
James A. Smith and
Abel Ureta{-}Vidal and
Ewan Birney},
title = {Ensembl 2007},
journal = {Nucleic Acids Res.},
volume = {35},
number = {Database-Issue},
pages = {610--617},
year = {2007},
url = {https://doi.org/10.1093/nar/gkl996},
doi = {10.1093/NAR/GKL996},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HubbardAB07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/FinnMSGHLMMKDESB06,
author = {Robert D. Finn and
Jaina Mistry and
Benjamin Schuster{-}B{\"{o}}ckler and
Sam Griffiths{-}Jones and
Volker Hollich and
Timo Lassmann and
Simon Moxon and
Mhairi Marshall and
Ajay Khanna and
Richard Durbin and
Sean R. Eddy and
Erik L. L. Sonnhammer and
Alex Bateman},
title = {Pfam: clans, web tools and services},
journal = {Nucleic Acids Res.},
volume = {34},
number = {Database-Issue},
pages = {247--251},
year = {2006},
url = {https://doi.org/10.1093/nar/gkj149},
doi = {10.1093/NAR/GKJ149},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/FinnMSGHLMMKDESB06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SchwarzABBBCCCCDFGHKKLLMNOPRSTAWDSSS06,
author = {Erich M. Schwarz and
Igor Antoshechkin and
Carol Bastiani and
Tamberlyn Bieri and
Darin Blasiar and
Payan Canaran and
Juancarlos Chan and
Nansheng Chen and
Wen J. Chen and
Paul Davis and
Tristan J. Fiedler and
Lisa R. Girard and
Todd W. Harris and
Eimear Kenny and
Ranjana Kishore and
Daniel Lawson and
Raymond Y. N. Lee and
Hans{-}Michael M{\"{u}}ller and
Cecilia Nakamura and
Philip Ozersky and
Andrei Petcherski and
Anthony Rogers and
William Spooner and
Mary Ann Tuli and
Kimberly Van Auken and
Daniel Wang and
Richard Durbin and
John Spieth and
Lincoln D. Stein and
Paul W. Sternberg},
title = {WormBase: better software, richer content},
journal = {Nucleic Acids Res.},
volume = {34},
number = {Database-Issue},
pages = {475--478},
year = {2006},
url = {https://doi.org/10.1093/nar/gkj061},
doi = {10.1093/NAR/GKJ061},
timestamp = {Mon, 08 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SchwarzABBBCCCCDFGHKKLLMNOPRSTAWDSSS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BirneyAC06,
author = {Ewan Birney and
T. Daniel Andrews and
Mario C{\'{a}}ccamo and
Yuan Chen and
Laura Clarke and
Guy Coates and
Tony Cox and
Fiona Cunningham and
Val Curwen and
Tim Cutts and
Thomas A. Down and
Richard Durbin and
Xos{\'{e}} M. Fern{\'{a}}ndez{-}Su{\'{a}}rez and
Paul Flicek and
Stefan Gr{\"{a}}f and
Martin Hammond and
Javier Herrero and
Kevin L. Howe and
Vivek Iyer and
Kerstin Jekosch and
Andreas K{\"{a}}h{\"{a}}ri and
Arek Kasprzyk and
Damian Keefe and
Felix Kokocinski and
Eugene Kulesha and
D. London and
Ian Longden and
Craig Melsopp and
Patrick Meidl and
Bert Overduin and
Anne Parker and
Glenn Proctor and
Andreas Prlic and
Mark Rae and
Daniel Rios and
Seth Redmond and
Michael Schuster and
Ian Sealy and
Stephen M. J. Searle and
Jessica Severin and
Guy Slater and
Damian Smedley and
James A. Smith and
Arne Stabenau and
Jim Stalker and
Stephen J. Trevanion and
Abel Ureta{-}Vidal and
Jan Vogel and
Simon White and
Cara Woodwark and
Tim J. P. Hubbard},
title = {Ensembl 2006},
journal = {Nucleic Acids Res.},
volume = {34},
number = {Database-Issue},
pages = {556--561},
year = {2006},
url = {https://doi.org/10.1093/nar/gkj133},
doi = {10.1093/NAR/GKJ133},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BirneyAC06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LiCRCHOLLZBWZDWD06,
author = {Heng Li and
Avril Coghlan and
Jue Ruan and
Lachlan James M. Coin and
Jean{-}Karim H{\'{e}}rich{\'{e}} and
Lara Osmotherly and
Ruiqiang Li and
Tao Liu and
Zhang Zhang and
Lars Bolund and
Gane Ka{-}Shu Wong and
Wei{-}Mou Zheng and
Paramvir Dehal and
Jun Wang and
Richard Durbin},
title = {TreeFam: a curated database of phylogenetic trees of animal gene families},
journal = {Nucleic Acids Res.},
volume = {34},
number = {Database-Issue},
pages = {572--580},
year = {2006},
url = {https://doi.org/10.1093/nar/gkj118},
doi = {10.1093/NAR/GKJ118},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/LiCRCHOLLZBWZDWD06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MulderAABBBBBBCCCDDFGHHHKKKLLLMMMMNOPPQSSSSVW05,
author = {Nicola J. Mulder and
Rolf Apweiler and
Teresa K. Attwood and
Amos Bairoch and
Alex Bateman and
David Binns and
Paul Bradley and
Peer Bork and
Phillip Bucher and
Lorenzo Cerutti and
Richard R. Copley and
Emmanuel Courcelle and
Ujjwal Das and
Richard Durbin and
Wolfgang Fleischmann and
Julian Gough and
Daniel H. Haft and
Nicola Harte and
Nicolas Hulo and
Daniel Kahn and
Alexander Kanapin and
Maria Krestyaninova and
David Lonsdale and
Rodrigo Lopez and
Ivica Letunic and
Martin Madera and
John Maslen and
Jennifer McDowall and
Alex L. Mitchell and
Anastasia N. Nikolskaya and
Sandra E. Orchard and
Marco Pagni and
Chris P. Ponting and
Emmanuel Quevillon and
Jeremy D. Selengut and
Christian J. A. Sigrist and
Ville Silventoinen and
David J. Studholme and
Robert Vaughan and
Cathy H. Wu},
title = {InterPro, progress and status in 2005},
journal = {Nucleic Acids Res.},
volume = {33},
number = {Database-Issue},
pages = {201--205},
year = {2005},
url = {https://doi.org/10.1093/nar/gki106},
doi = {10.1093/NAR/GKI106},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MulderAABBBBBBCCCDDFGHHHKKKLLLMMMMNOPPQSSSSVW05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ChenHABBBBCCCCCDKKLLMNPOPRSSAWDSSS05,
author = {Nansheng Chen and
Todd W. Harris and
Igor Antoshechkin and
Carol Bastiani and
Tamberlyn Bieri and
Darin Blasiar and
Keith Bradnam and
Payan Canaran and
Juancarlos Chan and
Chao{-}Kung Chen and
Wen J. Chen and
Fiona Cunningham and
Paul Davis and
Eimear Kenny and
Ranjana Kishore and
Daniel Lawson and
Raymond Y. N. Lee and
Hans{-}Michael M{\"{u}}ller and
Cecilia Nakamura and
Shraddha Pai and
Philip Ozersky and
Andrei Petcherski and
Anthony Rogers and
Aniko Sabo and
Erich M. Schwarz and
Kimberly Van Auken and
Qinghua Wang and
Richard Durbin and
John Spieth and
Paul W. Sternberg and
Lincoln D. Stein},
title = {WormBase: a comprehensive data resource for \emph{Caenorhabditis}
biology and genomics},
journal = {Nucleic Acids Res.},
volume = {33},
number = {Database-Issue},
pages = {383--389},
year = {2005},
url = {https://doi.org/10.1093/nar/gki066},
doi = {10.1093/NAR/GKI066},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ChenHABBBBCCCCCDKKLLMNPOPRSSAWDSSS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HubbardAC05,
author = {Tim J. P. Hubbard and
D. Andrews and
Mario C{\'{a}}ccamo and
Graham Cameron and
Yuan Chen and
Michele E. Clamp and
Laura Clarke and
Guy Coates and
Tony Cox and
Fiona Cunningham and
Val Curwen and
Tim Cutts and
Thomas A. Down and
Richard Durbin and
Xos{\'{e}} M. Fern{\'{a}}ndez{-}Su{\'{a}}rez and
James G. R. Gilbert and
Martin Hammond and
Javier Herrero and
H. Hotz and
Kevin L. Howe and
Vivek Iyer and
Kerstin Jekosch and
Andreas K{\"{a}}h{\"{a}}ri and
Arek Kasprzyk and
Damian Keefe and
Stephen Keenan and
Felix Kokocinski and
D. London and
Ian Longden and
Graham P. McVicker and
Craig Melsopp and
Patrick Meidl and
Simon C. Potter and
Glenn Proctor and
Mark Rae and
Daniel Rios and
Michael Schuster and
Stephen M. J. Searle and
Jessica Severin and
Guy Slater and
Damian Smedley and
James A. Smith and
William Spooner and
Arne Stabenau and
Jim Stalker and
R. Storey and
Stephen J. Trevanion and
Abel Ureta{-}Vidal and
Jan Vogel and
Simon White and
Cara Woodwark and
Ewan Birney},
title = {Ensembl 2005},
journal = {Nucleic Acids Res.},
volume = {33},
number = {Database-Issue},
pages = {447--453},
year = {2005},
url = {https://doi.org/10.1093/nar/gki138},
doi = {10.1093/NAR/GKI138},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HubbardAC05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CoinBD04,
author = {Lachlan James M. Coin and
Alex Bateman and
Richard Durbin},
title = {Enhanced protein domain discovery using taxonomy},
journal = {{BMC} Bioinform.},
volume = {5},
pages = {56},
year = {2004},
url = {https://doi.org/10.1186/1471-2105-5-56},
doi = {10.1186/1471-2105-5-56},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CoinBD04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BatemanCDFHGKMMSSYE04,
author = {Alex Bateman and
Lachlan James M. Coin and
Richard Durbin and
Robert D. Finn and
Volker Hollich and
Sam Griffiths{-}Jones and
Ajay Khanna and
Mhairi Marshall and
Simon Moxon and
Erik L. L. Sonnhammer and
David J. Studholme and
Corin Yeats and
Sean R. Eddy},
title = {The Pfam protein families database},
journal = {Nucleic Acids Res.},
volume = {32},
number = {Database-Issue},
pages = {138--141},
year = {2004},
url = {https://doi.org/10.1093/nar/gkh121},
doi = {10.1093/NAR/GKH121},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BatemanCDFHGKMMSSYE04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HarrisCCTABBBBCCCDKKLLMNOPRSSAWDSSS04,
author = {Todd W. Harris and
Nansheng Chen and
Fiona Cunningham and
Marcela K. Tello{-}Ruiz and
Igor Antoshechkin and
Carol Bastiani and
Tamberlyn Bieri and
Darin Blasiar and
Keith Bradnam and
Juancarlos Chan and
Chao{-}Kung Chen and
Wen J. Chen and
Paul Davis and
Eimear Kenny and
Ranjana Kishore and
Daniel Lawson and
Raymond Y. N. Lee and
Hans{-}Michael M{\"{u}}ller and
Cecilia Nakamura and
Philip Ozersky and
Andrei Petcherski and
Anthony Rogers and
Aniko Sabo and
Erich M. Schwarz and
Kimberly Van Auken and
Qinghua Wang and
Richard Durbin and
John Spieth and
Paul W. Sternberg and
Lincoln D. Stein},
title = {WormBase: a multi-species resource for nematode biology and genomics},
journal = {Nucleic Acids Res.},
volume = {32},
number = {Database-Issue},
pages = {411--417},
year = {2004},
url = {https://doi.org/10.1093/nar/gkh066},
doi = {10.1093/NAR/GKH066},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HarrisCCTABBBBCCCDKKLLMNOPRSSAWDSSS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BirneyAB04,
author = {Ewan Birney and
T. Daniel Andrews and
Paul Bevan and
Mario C{\'{a}}ccamo and
Graham Cameron and
Yuan Chen and
Laura Clarke and
Guy Coates and
Tony Cox and
James A. Cuff and
Val Curwen and
Tim Cutts and
Thomas A. Down and
Richard Durbin and
Eduardo Eyras and
Xos{\'{e}} M. Fern{\'{a}}ndez{-}Su{\'{a}}rez and
Paul J. Gane and
B. Gibbins and
James G. R. Gilbert and
Martin Hammond and
H. Hotz and
Vivek Iyer and
Andreas K{\"{a}}h{\"{a}}ri and
Kerstin Jekosch and
Arek Kasprzyk and
Damian Keefe and
Stephen Keenan and
Heikki Lehv{\"{a}}slaiho and
Graham P. McVicker and
Craig Melsopp and
Patrick Meidl and
Emmanuel Mongin and
Roger Pettett and
Simon C. Potter and
Glenn Proctor and
Mark Rae and
Stephen M. J. Searle and
Guy Slater and
Damian Smedley and
James A. Smith and
William Spooner and
Arne Stabenau and
Jim Stalker and
R. Storey and
Abel Ureta{-}Vidal and
Cara Woodwark and
Michele E. Clamp and
Tim J. P. Hubbard},
title = {Ensembl 2004},
journal = {Nucleic Acids Res.},
volume = {32},
number = {Database-Issue},
pages = {468--470},
year = {2004},
url = {https://doi.org/10.1093/nar/gkh038},
doi = {10.1093/NAR/GKH038},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BirneyAB04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/CoinD04,
author = {Lachlan James M. Coin and
Richard Durbin},
title = {Improved techniques for the identification of pseudogenes},
booktitle = {Proceedings Twelfth International Conference on Intelligent Systems
for Molecular Biology/Third European Conference on Computational Biology
2004, Glasgow, UK, July 31-August 4, 2004},
pages = {94--100},
year = {2004},
url = {https://doi.org/10.1093/bioinformatics/bth942},
doi = {10.1093/BIOINFORMATICS/BTH942},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/CoinD04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/MyersD03,
author = {Gene Myers and
Richard Durbin},
title = {A Table-Driven, Full-Sensitivity Similarity Search Algorithm},
journal = {J. Comput. Biol.},
volume = {10},
number = {2},
pages = {103--117},
year = {2003},
url = {https://doi.org/10.1089/106652703321825919},
doi = {10.1089/106652703321825919},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/MyersD03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ClampABBCCCCCCDDEGHHKKLIMMPPRSSSSSSSSUVB03,
author = {Michele E. Clamp and
T. Daniel Andrews and
Daniel Barker and
Paul Bevan and
Graham Cameron and
Yuan Chen and
Laura Clarke and
Tony Cox and
James A. Cuff and
Val Curwen and
Thomas A. Down and
Richard Durbin and
Eduardo Eyras and
James G. R. Gilbert and
Martin Hammond and
Tim J. P. Hubbard and
Arek Kasprzyk and
Damian Keefe and
Heikki Lehv{\"{a}}slaiho and
Vivek Iyer and
Craig Melsopp and
Emmanuel Mongin and
Roger Pettett and
Simon C. Potter and
Alistair G. Rust and
Esther Schmidt and
Stephen M. J. Searle and
Guy Slater and
James A. Smith and
William Spooner and
Arne Stabenau and
Jim Stalker and
Elia Stupka and
Abel Ureta{-}Vidal and
Imre Vastrik and
Ewan Birney},
title = {Ensembl 2002: accommodating comparative genomics},
journal = {Nucleic Acids Res.},
volume = {31},
number = {1},
pages = {38--42},
year = {2003},
url = {https://doi.org/10.1093/nar/gkg083},
doi = {10.1093/NAR/GKG083},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ClampABBCCCCCCDDEGHHKKLIMMPPRSSSSSSSSUVB03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HarrisLSBLCBKCKCMPTDBRCSSDS03,
author = {Todd W. Harris and
Raymond Y. N. Lee and
Erich M. Schwarz and
Keith Bradnam and
Daniel Lawson and
Wen J. Chen and
Darin Blasiar and
Eimear Kenny and
Fiona Cunningham and
Ranjana Kishore and
Juancarlos Chan and
Hans{-}Michael M{\"{u}}ller and
Andrei Petcherski and
Gudmundur A. Thorisson and
Allen Day and
Tamberlyn Bieri and
Anthony Rogers and
Chao{-}Kung Chen and
John Spieth and
Paul W. Sternberg and
Richard Durbin and
Lincoln D. Stein},
title = {WormBase: a cross-species database for comparative genomics},
journal = {Nucleic Acids Res.},
volume = {31},
number = {1},
pages = {133--137},
year = {2003},
url = {https://doi.org/10.1093/nar/gkg053},
doi = {10.1093/NAR/GKG053},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HarrisLSBLCBKCKCMPTDBRCSSDS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MulderAABBBBBBBBCCDDFFGHHHKKKLLLSOPPPSSSVZ03,
author = {Nicola J. Mulder and
Rolf Apweiler and
Terri K. Attwood and
Amos Bairoch and
Daniel Barrell and
Alex Bateman and
David Binns and
Margaret Biswas and
Paul Bradley and
Peer Bork and
Philipp Bucher and
Richard R. Copley and
Emmanuel Courcelle and
Ujjwal Das and
Richard Durbin and
Laurent Falquet and
Wolfgang Fleischmann and
Sam Griffiths{-}Jones and
Daniel H. Haft and
Nicola Harte and
Nicolas Hulo and
Daniel Kahn and
Alexander Kanapin and
Maria Krestyaninova and
Rodrigo Lopez and
Ivica Letunic and
David Lonsdale and
Ville Silventoinen and
Sandra E. Orchard and
Marco Pagni and
David Peyruc and
Chris P. Ponting and
Jeremy D. Selengut and
Florence Servant and
Christian J. A. Sigrist and
Robert Vaughan and
Evgeni M. Zdobnov},
title = {The InterPro Database, 2003 brings increased coverage and new features},
journal = {Nucleic Acids Res.},
volume = {31},
number = {1},
pages = {315--318},
year = {2003},
url = {https://doi.org/10.1093/nar/gkg046},
doi = {10.1093/NAR/GKG046},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/MulderAABBBBBBBBCCDDFFGHHHKKKLLLSOPPPSSSVZ03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/MulderAABBBBBBBCCDFFGGHHHKKKLLOPPPSS02,
author = {Nicola J. Mulder and
Rolf Apweiler and
Terri K. Attwood and
Amos Bairoch and
Alex Bateman and
David Binns and
Margaret Biswas and
Paul Bradley and
Peer Bork and
Philipp Bucher and
Richard R. Copley and
Emmanuel Courcelle and
Richard Durbin and
Laurent Falquet and
Wolfgang Fleischmann and
J{\'{e}}r{\^{o}}me Gouzy and
Sam Griffiths{-}Jones and
Daniel H. Haft and
Henning Hermjakob and
Nicolas Hulo and
Daniel Kahn and
Alexander Kanapin and
Maria Krestyaninova and
Rodrigo Lopez and
Ivica Letunic and
Sue Orchard and
Marco Pagni and
David Peyruc and
Chris P. Ponting and
Florence Servant and
Christian J. A. Sigrist},
title = {InterPro: An Integrated Documentation Resource for Protein Families,
Domains and Functional Sites},
journal = {Briefings Bioinform.},
volume = {3},
number = {3},
pages = {225--235},
year = {2002},
url = {https://doi.org/10.1093/bib/3.3.225},
doi = {10.1093/BIB/3.3.225},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/MulderAABBBBBBBCCDFFGGHHHKKKLLOPPPSS02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MeyerD02,
author = {Irmtraud M. Meyer and
Richard Durbin},
title = {Comparative ab initio prediction of gene structures using pair HMMs},
journal = {Bioinform.},
volume = {18},
number = {10},
pages = {1309--1318},
year = {2002},
url = {https://doi.org/10.1093/bioinformatics/18.10.1309},
doi = {10.1093/BIOINFORMATICS/18.10.1309},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MeyerD02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HoweBD02,
author = {Kevin L. Howe and
Alex Bateman and
Richard Durbin},
title = {QuickTree: building huge Neighbour-Joining trees of protein sequences},
journal = {Bioinform.},
volume = {18},
number = {11},
pages = {1546--1547},
year = {2002},
url = {https://doi.org/10.1093/bioinformatics/18.11.1546},
doi = {10.1093/BIOINFORMATICS/18.11.1546},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HoweBD02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HubbardBBCCCCCCDDEGHHKLLMMPPPRSSSSSSSSUVC03,
author = {Tim J. P. Hubbard and
Daniel Barker and
Ewan Birney and
Graham Cameron and
Yuan Chen and
Laura Clarke and
Tony Cox and
James A. Cuff and
Val Curwen and
Thomas A. Down and
Richard Durbin and
Eduardo Eyras and
James G. R. Gilbert and
Martin Hammond and
Lukasz Huminiecki and
Arek Kasprzyk and
Heikki Lehv{\"{a}}slaiho and
Philip Lijnzaad and
Craig Melsopp and
Emmanuel Mongin and
Roger Pettett and
Matthew R. Pocock and
Simon C. Potter and
Alistair G. Rust and
Esther Schmidt and
Stephen M. J. Searle and
Guy Slater and
James A. Smith and
William Spooner and
Arne Stabenau and
Jim Stalker and
Elia Stupka and
Abel Ureta{-}Vidal and
Imre Vastrik and
Michele E. Clamp},
title = {The Ensembl genome database project},
journal = {Nucleic Acids Res.},
volume = {30},
number = {1},
pages = {38--41},
year = {2002},
url = {https://doi.org/10.1093/nar/30.1.38},
doi = {10.1093/NAR/30.1.38},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HubbardBBCCCCCCDDEGHHKLLMMPPPRSSSSSSSSUVC03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BatemanBCDEEGHMS03,
author = {Alex Bateman and
Ewan Birney and
Lorenzo Cerutti and
Richard Durbin and
Laurence Ettwiller and
Sean R. Eddy and
Sam Griffiths{-}Jones and
Kevin L. Howe and
Mhairi Marshall and
Erik L. L. Sonnhammer},
title = {The Pfam Protein Families Database},
journal = {Nucleic Acids Res.},
volume = {30},
number = {1},
pages = {276--280},
year = {2002},
url = {https://doi.org/10.1093/nar/30.1.276},
doi = {10.1093/NAR/30.1.276},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BatemanBCDEEGHMS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/MyersD02,
author = {Gene Myers and
Richard Durbin},
editor = {Roderic Guig{\'{o}} and
Dan Gusfield},
title = {Invited Lecture - Accelerating Smith-Waterman Searches},
booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI}
2002, Rome, Italy, September 17-21, 2002, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2452},
pages = {331--342},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/3-540-45784-4\_25},
doi = {10.1007/3-540-45784-4\_25},
timestamp = {Tue, 14 May 2019 10:00:40 +0200},
biburl = {https://dblp.org/rec/conf/wabi/MyersD02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ApweilerABBBBBCCCDFFGHHJKKKLMMOPSSZ01,
author = {Rolf Apweiler and
Terri K. Attwood and
Amos Bairoch and
Alex Bateman and
Ewan Birney and
Margaret Biswas and
Philipp Bucher and
Lorenzo Cerutti and
Florence Corpet and
Michael D. R. Croning and
Richard Durbin and
Laurent Falquet and
Wolfgang Fleischmann and
J{\'{e}}r{\^{o}}me Gouzy and
Henning Hermjakob and
Nicolas Hulo and
Inge Jonassen and
Daniel Kahn and
Alexander Kanapin and
Youla Karavidopoulou and
Rodrigo Lopez and
Beate Marx and
Nicola J. Mulder and
Thomas M. Oinn and
Marco Pagni and
Florence Servant and
Christian J. A. Sigrist and
Evgeni M. Zdobnov},
title = {The InterPro database, an integrated documentation resource for protein
families, domains and functional sites},
journal = {Nucleic Acids Res.},
volume = {29},
number = {1},
pages = {37--40},
year = {2001},
url = {https://doi.org/10.1093/nar/29.1.37},
doi = {10.1093/NAR/29.1.37},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/ApweilerABBBBBCCCDFFGHHJKKKLMMOPSSZ01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SteinSDTS01,
author = {Lincoln Stein and
Paul W. Sternberg and
Richard Durbin and
Jean Thierry{-}Mieg and
John Spieth},
title = {WormBase: network access to the genome and biology of Caenorhabditis
elegans},
journal = {Nucleic Acids Res.},
volume = {29},
number = {1},
pages = {82--86},
year = {2001},
url = {https://doi.org/10.1093/nar/29.1.82},
doi = {10.1093/NAR/29.1.82},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SteinSDTS01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/acl/Durbin01,
author = {Richard Durbin},
title = {Interpreting the Human Genome Sequence, Using Stochastic Grammars},
booktitle = {Association for Computational Linguistic, 39th Annual Meeting and
10th Conference of the European Chapter, Proceedings of the Conference,
July 9-11, 2001, Toulouse, France},
pages = {1},
publisher = {Morgan Kaufmann Publishers},
year = {2001},
url = {https://aclanthology.org/P01-1001/},
doi = {10.3115/1073012.1073013},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/acl/Durbin01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ApweilerABBBBBCCCDFFGHHJKKKLMMOPSSZ00,
author = {Rolf Apweiler and
Terri K. Attwood and
Amos Bairoch and
Alex Bateman and
Ewan Birney and
Margaret Biswas and
Philipp Bucher and
Lorenzo Cerutti and
Florence Corpet and
Michael D. R. Croning and
Richard Durbin and
Laurent Falquet and
Wolfgang Fleischmann and
J{\'{e}}r{\^{o}}me Gouzy and
Henning Hermjakob and
Nicolas Hulo and
Inge Jonassen and
Daniel Kahn and
Alexander Kanapin and
Youla Karavidopoulou and
Rodrigo Lopez and
Beate Marx and
Nicola J. Mulder and
Thomas M. Oinn and
Marco Pagni and
Florence Servant and
Christian J. A. Sigrist and
Evgeni M. Zdobnov},
title = {InterPro-an integrated documentation resource for protein families,
domains and functional sites},
journal = {Bioinform.},
volume = {16},
number = {12},
pages = {1145--1150},
year = {2000},
url = {https://doi.org/10.1093/bioinformatics/16.12.1145},
doi = {10.1093/BIOINFORMATICS/16.12.1145},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ApweilerABBBBBCCCDFFGHHJKKKLMMOPSSZ00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BatemanBDEHS00,
author = {Alex Bateman and
Ewan Birney and
Richard Durbin and
Sean R. Eddy and
Kevin L. Howe and
Erik L. L. Sonnhammer},
title = {The Pfam Protein Families Database},
journal = {Nucleic Acids Res.},
volume = {28},
number = {1},
pages = {263--266},
year = {2000},
url = {https://doi.org/10.1093/nar/28.1.263},
doi = {10.1093/NAR/28.1.263},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BatemanBDEHS00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BatemanBDEFS99,
author = {Alex Bateman and
Ewan Birney and
Richard Durbin and
Sean R. Eddy and
Robert D. Finn and
Erik L. L. Sonnhammer},
title = {Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority
of proteins},
journal = {Nucleic Acids Res.},
volume = {27},
number = {1},
pages = {260--262},
year = {1999},
url = {https://doi.org/10.1093/nar/27.1.260},
doi = {10.1093/NAR/27.1.260},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BatemanBDEFS99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@book{DBLP:books/cu/DurbinEK98,
author = {Richard Durbin and
Sean R. Eddy and
Anders Krogh and
Graeme J. Mitchison},
title = {Biological Sequence Analysis: Probabilistic Models of Proteins and
Nucleic Acids},
publisher = {Cambridge University Press},
year = {1998},
url = {https://doi.org/10.1017/CBO9780511790492},
doi = {10.1017/CBO9780511790492},
isbn = {0-521-62971-3},
timestamp = {Wed, 10 Jul 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/books/cu/DurbinEK98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/HolmesD98,
author = {Ian Holmes and
Richard Durbin},
title = {Dynamic Programming Alignment Accuracy},
journal = {J. Comput. Biol.},
volume = {5},
number = {3},
pages = {493--504},
year = {1998},
url = {https://doi.org/10.1089/cmb.1998.5.493},
doi = {10.1089/CMB.1998.5.493},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/HolmesD98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SonnhammerEBBD98,
author = {Erik L. L. Sonnhammer and
Sean R. Eddy and
Ewan Birney and
Alex Bateman and
Richard Durbin},
title = {Pfam: multiple sequence alignments and HMM-profiles of protein domains},
journal = {Nucleic Acids Res.},
volume = {26},
number = {1},
pages = {320--322},
year = {1998},
url = {https://doi.org/10.1093/nar/26.1.320},
doi = {10.1093/NAR/26.1.320},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SonnhammerEBBD98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HolmesD98,
author = {Ian Holmes and
Richard Durbin},
editor = {Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Dynamic programming alignment accuracy},
booktitle = {Proceedings of the Second Annual International Conference on Research
in Computational Molecular Biology, {RECOMB} 1998, New York, NY, USA,
March 22-25, 1998},
pages = {102--108},
publisher = {{ACM}},
year = {1998},
url = {https://doi.org/10.1145/279069.279102},
doi = {10.1145/279069.279102},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HolmesD98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/BirneyD97,
author = {Ewan Birney and
Richard Durbin},
editor = {Terry Gaasterland and
Peter D. Karp and
Kevin Karplus and
Christos A. Ouzounis and
Chris Sander and
Alfonso Valencia},
title = {Dynamite: {A} Flexible Code Generating Language for Dynamic Programming
Methods Used in Sequence Comparison},
booktitle = {Proceedings of the 5th International Conference on Intelligent Systems
for Molecular Biology, Halkidiki, Greece, June 21-26, 1997},
pages = {56--64},
publisher = {{AAAI}},
year = {1997},
url = {http://www.aaai.org/Library/ISMB/1997/ismb97-008.php},
timestamp = {Thu, 13 Dec 2012 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/BirneyD97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/EddyMD95,
author = {Sean R. Eddy and
Graeme J. Mitchison and
Richard Durbin},
title = {Maximum Discrimination Hidden Markov Models of Sequence Consensus},
journal = {J. Comput. Biol.},
volume = {2},
number = {1},
pages = {9--23},
year = {1995},
url = {https://doi.org/10.1089/cmb.1995.2.9},
doi = {10.1089/CMB.1995.2.9},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/EddyMD95.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/SewellD95,
author = {Roger F. Sewell and
Richard Durbin},
title = {Method for Calculation of Probability of Matching a Bounded Regular
Expression in a Random Data String},
journal = {J. Comput. Biol.},
volume = {2},
number = {1},
pages = {25--31},
year = {1995},
url = {https://doi.org/10.1089/cmb.1995.2.25},
doi = {10.1089/CMB.1995.2.25},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/SewellD95.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SonnhammerD94,
author = {Erik L. L. Sonnhammer and
Richard Durbin},
title = {A workbench for large-scale sequence homology analysis},
journal = {Comput. Appl. Biosci.},
volume = {10},
number = {3},
pages = {301--307},
year = {1994},
url = {https://doi.org/10.1093/bioinformatics/10.3.301},
doi = {10.1093/BIOINFORMATICS/10.3.301},
timestamp = {Fri, 15 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SonnhammerD94.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/SonnhammerD94,
author = {Erik L. L. Sonnhammer and
Richard Durbin},
editor = {Russ B. Altman and
Douglas L. Brutlag and
Peter D. Karp and
Richard H. Lathrop and
David B. Searls},
title = {An Expert System for Processing Sequence Homology Data},
booktitle = {Proceedings of the Second International Conference on Intelligent
Systems for Molecular Biology, August 14-17, 1994, Stanford University,
Stanford, California, {USA}},
pages = {363--368},
publisher = {{AAAI}},
year = {1994},
url = {http://www.aaai.org/Library/ISMB/1994/ismb94-045.php},
timestamp = {Thu, 13 Dec 2012 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/SonnhammerD94.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SulstonMDH89,
author = {John Sulston and
Frank Mallett and
Richard Durbin and
Terry Horsnell},
title = {Image analysis of restriction enzyme fingerprint autoradiograms},
journal = {Comput. Appl. Biosci.},
volume = {5},
number = {2},
pages = {101--106},
year = {1989},
url = {https://doi.org/10.1093/bioinformatics/5.2.101},
doi = {10.1093/BIOINFORMATICS/5.2.101},
timestamp = {Fri, 15 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SulstonMDH89.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neco/DurbinR89,
author = {Richard Durbin and
David E. Rumelhart},
title = {Product Units: {A} Computationally Powerful and Biologically Plausible
Extension to Backpropagation Networks},
journal = {Neural Comput.},
volume = {1},
number = {1},
pages = {133--142},
year = {1989},
url = {https://doi.org/10.1162/neco.1989.1.1.133},
doi = {10.1162/NECO.1989.1.1.133},
timestamp = {Tue, 01 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/neco/DurbinR89.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neco/DurbinSY89,
author = {Richard Durbin and
Richard Szeliski and
Alan L. Yuille},
title = {An Analysis of the Elastic Net Approach to the Traveling Salesman
Problem},
journal = {Neural Comput.},
volume = {1},
number = {3},
pages = {348--358},
year = {1989},
url = {https://doi.org/10.1162/neco.1989.1.3.348},
doi = {10.1162/NECO.1989.1.3.348},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/neco/DurbinSY89.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nato/DurbinR89,
author = {Richard Durbin and
David E. Rumelhart},
editor = {Fran{\c{c}}oise Fogelman{-}Souli{\'{e}} and
Jeanny H{\'{e}}rault},
title = {Product Units with Trainable Exponents and Multi-Layer Networks},
booktitle = {Neurocomputing - Algorithms, Architectures and Applications, Proceedings
of the {NATO} Advanced Research Workshop on Neurocomputing Algorithms,
Architectures and Applications, Les Arcs, France, February 27 - March
3, 1989},
series = {{NATO} {ASI} Series},
volume = {68},
pages = {15--26},
publisher = {Springer},
year = {1989},
url = {https://doi.org/10.1007/978-3-642-76153-9\_2},
doi = {10.1007/978-3-642-76153-9\_2},
timestamp = {Sat, 18 Apr 2020 18:05:29 +0200},
biburl = {https://dblp.org/rec/conf/nato/DurbinR89.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SulstonMSDHC88,
author = {John Sulston and
Frank Mallett and
Rodger Staden and
Richard Durbin and
Terry Horsnell and
Alan Coulson},
title = {Software for genome mapping by fingerprinting techniques},
journal = {Comput. Appl. Biosci.},
volume = {4},
number = {1},
pages = {125--132},
year = {1988},
url = {https://doi.org/10.1093/bioinformatics/4.1.125},
doi = {10.1093/BIOINFORMATICS/4.1.125},
timestamp = {Fri, 15 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SulstonMSDHC88.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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