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ORCIDBibTeX records: Michael B. Eisen
@article{DBLP:journals/ploscb/BourneBE15,
author = {Philip E. Bourne and
Steven E. Brenner and
Michael B. Eisen},
title = {Ten Years of \emph{PLoS\({}^{\mbox{{\textdaggerdbl}}}\) Computational
Biology: } {A} Decade of Appreciation and Innovation},
journal = {PLoS Comput. Biol.},
volume = {11},
number = {6},
year = {2015},
url = {https://doi.org/10.1371/journal.pcbi.1004317},
doi = {10.1371/JOURNAL.PCBI.1004317},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/BourneBE15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/RubelWHBBFHKEKMHH10,
author = {Oliver R{\"{u}}bel and
Gunther H. Weber and
Min{-}Yu Huang and
E. Wes Bethel and
Mark D. Biggin and
Charless C. Fowlkes and
Cris L. Luengo Hendriks and
Soile V. E. Ker{\"{a}}nen and
Michael B. Eisen and
David W. Knowles and
Jitendra Malik and
Hans Hagen and
Bernd Hamann},
title = {Integrating Data Clustering and Visualization for the Analysis of
3D Gene Expression Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {7},
number = {1},
pages = {64--79},
year = {2010},
url = {https://doi.org/10.1109/TCBB.2008.49},
doi = {10.1109/TCBB.2008.49},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/RubelWHBBFHKEKMHH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:journals/procedia/RubelABBCCDEFGHHHKKHMMMP10,
author = {Oliver R{\"{u}}bel and
Sean Ahern and
E. Wes Bethel and
Mark D. Biggin and
Hank Childs and
Estelle Cormier{-}Michel and
Angela H. DePace and
Michael B. Eisen and
Charless C. Fowlkes and
Cameron G. R. Geddes and
Hans Hagen and
Bernd Hamann and
Min{-}Yu Huang and
Soile V. E. Ker{\"{a}}nen and
David W. Knowles and
Cris L. Luengo Hendriks and
Jitendra Malik and
Jeremy S. Meredith and
Peter Messmer and
Prabhat},
editor = {Peter M. A. Sloot and
G. Dick van Albada and
Jack J. Dongarra},
title = {Coupling visualization and data analysis for knowledge discovery from
multi-dimensional scientific data},
booktitle = {Proceedings of the International Conference on Computational Science,
{ICCS} 2010, University of Amsterdam, The Netherlands, May 31 - June
2, 2010},
series = {Procedia Computer Science},
volume = {1},
number = {1},
pages = {1757--1764},
publisher = {Elsevier},
year = {2010},
url = {https://doi.org/10.1016/j.procs.2010.04.197},
doi = {10.1016/J.PROCS.2010.04.197},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/procedia/RubelABBCCDEFGHHHKKHMMMP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/LuskE08,
author = {Richard W. Lusk and
Michael B. Eisen},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany Murray and
Teri E. Klein},
title = {Use of an Evolutionary Model to Provide Evidence for a Wide Heterogenity
of Required Affinities Between Transcription Factors and Their Binding
Sites in Yeast},
booktitle = {Biocomputing 2008, Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, 4-8 January 2008},
pages = {489--500},
publisher = {World Scientific},
year = {2008},
url = {http://psb.stanford.edu/psb-online/proceedings/psb08/lusk.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/LuskE08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dfg/RubelWHBKFHDSEBHMKH07,
author = {Oliver R{\"{u}}bel and
Gunther H. Weber and
Min{-}Yu Huang and
E. Wes Bethel and
Soile V. E. Ker{\"{a}}nen and
Charless C. Fowlkes and
Cris L. Luengo Hendriks and
Angela H. DePace and
Lisa Simirenko and
Michael B. Eisen and
Mark D. Biggin and
Hans Hagen and
Jitendra Malik and
David W. Knowles and
Bernd Hamann},
editor = {Hans Hagen and
Martin Hering{-}Bertram and
Christoph Garth},
title = {PointCloudXplore 2: Visual Exploration of 3D Gene Expression},
booktitle = {Visualization of Large and Unstructured Data Sets: Second workshop
of the DFG's International Research Training Group "Visualization
of Large and Unstructured Data Sets - Applications in Geospatial Planning,
Modeling, and Engineering", September 9-11, 2007 Kaiserslautern, Germany},
series = {{LNI}},
volume = {{S-7}},
pages = {125--137},
publisher = {{GI}},
year = {2007},
url = {https://dl.gi.de/handle/20.500.12116/4617},
timestamp = {Tue, 04 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/dfg/RubelWHBKFHDSEBHMKH07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PollardMIE06,
author = {Daniel A. Pollard and
Alan M. Moses and
Venky N. Iyer and
Michael B. Eisen},
title = {Detecting the limits of regulatory element conservation and divergence
estimation using pairwise and multiple alignments},
journal = {{BMC} Bioinform.},
volume = {7},
pages = {376},
year = {2006},
url = {https://doi.org/10.1186/1471-2105-7-376},
doi = {10.1186/1471-2105-7-376},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PollardMIE06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MintserisE06,
author = {Julian Mintseris and
Michael B. Eisen},
title = {Design of a combinatorial {DNA} microarray for protein-DNA interaction
studies},
journal = {{BMC} Bioinform.},
volume = {7},
pages = {429},
year = {2006},
url = {https://doi.org/10.1186/1471-2105-7-429},
doi = {10.1186/1471-2105-7-429},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MintserisE06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/MosesPNILBE06,
author = {Alan M. Moses and
Daniel A. Pollard and
David A. Nix and
Venky N. Iyer and
Xiaoyong Li and
Mark D. Biggin and
Michael B. Eisen},
title = {Large-Scale Turnover of Functional Transcription Factor Binding Sites
in \emph{Drosophila}},
journal = {PLoS Comput. Biol.},
volume = {2},
number = {10},
year = {2006},
url = {https://doi.org/10.1371/journal.pcbi.0020130},
doi = {10.1371/JOURNAL.PCBI.0020130},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/MosesPNILBE06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/PengLEM06,
author = {Hanchuan Peng and
Fuhui Long and
Michael B. Eisen and
Eugene W. Myers},
title = {Clustering gene expression patterns of fly embryos},
booktitle = {Proceedings of the 2006 {IEEE} International Symposium on Biomedical
Imaging: From Nano to Macro, Arlington, VA, USA, 6-9 April 2006},
pages = {1144--1147},
publisher = {{IEEE}},
year = {2006},
url = {https://doi.org/10.1109/ISBI.2006.1625125},
doi = {10.1109/ISBI.2006.1625125},
timestamp = {Wed, 04 Oct 2023 17:01:25 +0200},
biburl = {https://dblp.org/rec/conf/isbi/PengLEM06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/vissym/RubelWKFHSSEBHSMKH06,
author = {Oliver R{\"{u}}bel and
Gunther H. Weber and
Soile V. E. Ker{\"{a}}nen and
Charless C. Fowlkes and
Cris L. Luengo Hendriks and
Lisa Simirenko and
Nameeta Y. Shah and
Michael B. Eisen and
Mark D. Biggin and
Hans Hagen and
Damir Sudar and
Jitendra Malik and
David W. Knowles and
Bernd Hamann},
editor = {Beatriz Sousa Santos and
Thomas Ertl and
Kenneth I. Joy},
title = {PointCloudXplore: Visual Analysis of 3D Gene Expression Data Using
Physical Views and Parallel Coordinates},
booktitle = {8th Joint Eurographics - {IEEE} {VGTC} Symposium on Visualization,
EuroVis 2006, Lisbon, Portugal, May 8-10, 2006},
pages = {203--210},
publisher = {Eurographics Association},
year = {2006},
url = {https://doi.org/10.2312/VisSym/EuroVis06/203-210},
doi = {10.2312/VISSYM/EUROVIS06/203-210},
timestamp = {Thu, 16 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/vissym/RubelWKFHSSEBHSMKH06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/vluds/RubelWKFHSSEBHS06,
author = {Oliver R{\"{u}}bel and
Gunther H. Weber and
Soile V. E. Ker{\"{a}}nen and
Charless C. Fowlkes and
Cris L. Luengo Hendriks and
Lisa Simirenko and
Nameeta Y. Shah and
Michael B. Eisen and
Mark D. Biggin and
Hans Hagen and
Damir Sudar and
Jitendra Malik and
David W. Knowles and
Bernd Hamann},
editor = {Hans Hagen and
Andreas Kerren and
Peter Dannenmann},
title = {PointCloudXplore: {A} Visualization Tool for 3D Gene Expression Data},
booktitle = {Visualization of Large and Unstructured Data Sets: Applications in
Geospatial Planning, Modeling and Engineering - First workshop of
the DFG's International Research Training Group, {VLUDS} 2006, Dagstuhl
Castle, Germany, June 14-16, 2006},
series = {{LNI}},
volume = {{S-4}},
pages = {107--118},
publisher = {Gesellschaft f{\"{u}}r Informatik, Bonn},
year = {2006},
timestamp = {Thu, 16 Dec 2021 11:03:14 +0100},
biburl = {https://dblp.org/rec/conf/vluds/RubelWKFHSSEBHS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NixE05,
author = {David A. Nix and
Michael B. Eisen},
title = {{GATA:} a graphic alignment tool for comparative sequence analysis},
journal = {{BMC} Bioinform.},
volume = {6},
pages = {9},
year = {2005},
url = {https://doi.org/10.1186/1471-2105-6-9},
doi = {10.1186/1471-2105-6-9},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NixE05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/BourneBE05,
author = {Philip E. Bourne and
Steven E. Brenner and
Michael B. Eisen},
title = {\emph{PLoS Computational Biology: } {A} New Community Journal},
journal = {PLoS Comput. Biol.},
volume = {1},
number = {1},
year = {2005},
url = {https://doi.org/10.1371/journal.pcbi.0010004},
doi = {10.1371/JOURNAL.PCBI.0010004},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/BourneBE05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PollardBSCE04,
author = {Daniel A. Pollard and
Casey M. Bergman and
Jens Stoye and
Susan E. Celniker and
Michael B. Eisen},
title = {Benchmarking tools for the alignment of functional noncoding {DNA}},
journal = {{BMC} Bioinform.},
volume = {5},
pages = {6},
year = {2004},
url = {https://doi.org/10.1186/1471-2105-5-6},
doi = {10.1186/1471-2105-5-6},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PollardBSCE04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PollardBSCE04a,
author = {Daniel A. Pollard and
Casey M. Bergman and
Jens Stoye and
Susan E. Celniker and
Michael B. Eisen},
title = {Correction: Benchmarking tools for the alignment of functional noncodingDNA},
journal = {{BMC} Bioinform.},
volume = {5},
pages = {73},
year = {2004},
url = {https://doi.org/10.1186/1471-2105-5-73},
doi = {10.1186/1471-2105-5-73},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PollardBSCE04a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/MosesCE04,
author = {Alan M. Moses and
Derek Y. Chiang and
Michael B. Eisen},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany A. Jung and
Teri E. Klein},
title = {Phylogenetic Motif Detection by Expectation-Maximization on Evolutionary
Mixtures},
booktitle = {Biocomputing 2004, Proceedings of the Pacific Symposium, Hawaii, USA,
6-10 January 2004},
pages = {324--335},
publisher = {World Scientific},
year = {2004},
url = {http://psb.stanford.edu/psb-online/proceedings/psb04/moses.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/MosesCE04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ChiangMKLE03,
author = {Derek Y. Chiang and
Alan M. Moses and
Manolis Kamvysselis and
Eric S. Lander and
Michael B. Eisen},
editor = {Martin Vingron and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman and
Webb Miller},
title = {Phylogenetically and spatially conserved word pairs associated with
gene expression changes in yeasts},
booktitle = {Proceedings of the Sventh Annual International Conference on Computational
Biology, {RECOMB} 2003, Berlin, Germany, April 10-13, 2003},
pages = {84--93},
publisher = {{ACM}},
year = {2003},
url = {https://doi.org/10.1145/640075.640085},
doi = {10.1145/640075.640085},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ChiangMKLE03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KelesLE02,
author = {S{\"{u}}nd{\"{u}}z Keles and
Mark J. van der Laan and
Michael B. Eisen},
title = {Identification of regulatory elements using a feature selection method},
journal = {Bioinform.},
volume = {18},
number = {9},
pages = {1167--1175},
year = {2002},
url = {https://doi.org/10.1093/bioinformatics/18.9.1167},
doi = {10.1093/BIOINFORMATICS/18.9.1167},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KelesLE02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SherlockHKBMDKWJBESBBC01,
author = {Gavin Sherlock and
Tina Hernandez{-}Boussard and
Andrew Kasarskis and
Gail Binkley and
John C. Matese and
Selina S. Dwight and
Miroslava Kaloper and
Shuai Weng and
Heng Jin and
Catherine A. Ball and
Michael B. Eisen and
Paul T. Spellman and
Patrick O. Brown and
David Botstein and
J. Michael Cherry},
title = {The Stanford Microarray Database},
journal = {Nucleic Acids Res.},
volume = {29},
number = {1},
pages = {152--155},
year = {2001},
url = {https://doi.org/10.1093/nar/29.1.152},
doi = {10.1093/NAR/29.1.152},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SherlockHKBMDKWJBESBBC01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/ChiangBE01,
author = {Derek Y. Chiang and
Patrick O. Brown and
Michael B. Eisen},
title = {Visualizing associations between genome sequences and gene expression
data using genome-mean expression profiles},
booktitle = {Proceedings of the Ninth International Conference on Intelligent Systems
for Molecular Biology, July 21-25, 2001, Copenhagen, Denmark},
pages = {49--55},
year = {2001},
timestamp = {Thu, 20 Jun 2002 11:09:36 +0200},
biburl = {https://dblp.org/rec/conf/ismb/ChiangBE01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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