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BibTeX records: Mark H. Ellisman
@article{DBLP:journals/ploscb/FarinaVFBCEBS23, author = {Sofia Farina and Val{\'{e}}rie Voorsluijs and Sonja Fixemer and David S. Bouvier and Susanne Claus and Mark H. Ellisman and St{\'{e}}phane P. A. Bordas and Alexander Skupin}, title = {Mechanistic multiscale modelling of energy metabolism in human astrocytes reveals the impact of morphology changes in Alzheimer's Disease}, journal = {PLoS Comput. Biol.}, volume = {19}, number = {9}, year = {2023}, url = {https://doi.org/10.1371/journal.pcbi.1011464}, doi = {10.1371/JOURNAL.PCBI.1011464}, timestamp = {Fri, 27 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/FarinaVFBCEBS23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bigdataconf/MadanyMPEA20, author = {Matthew Madany and Kyle Marcus and Steven Peltier and Mark H. Ellisman and Ilkay Altintas}, editor = {Xintao Wu and Chris Jermaine and Li Xiong and Xiaohua Hu and Olivera Kotevska and Siyuan Lu and Weija Xu and Srinivas Aluru and Chengxiang Zhai and Eyhab Al{-}Masri and Zhiyuan Chen and Jeff Saltz}, title = {NeuroKube: An Automated and Autoscaling Neuroimaging Reconstruction Framework using Cloud Native Computing and {A.I}}, booktitle = {2020 {IEEE} International Conference on Big Data {(IEEE} BigData 2020), Atlanta, GA, USA, December 10-13, 2020}, pages = {320--330}, publisher = {{IEEE}}, year = {2020}, url = {https://doi.org/10.1109/BigData50022.2020.9378053}, doi = {10.1109/BIGDATA50022.2020.9378053}, timestamp = {Fri, 19 Nov 2021 16:08:20 +0100}, biburl = {https://dblp.org/rec/conf/bigdataconf/MadanyMPEA20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ChurasPHWLPE17, author = {Chris Churas and Alex J. Perez and Hiroyuki Hakozaki and Willy Wong and David Lee and Steven Peltier and Mark H. Ellisman}, title = {Probability Map Viewer: near real-time probability map generator of serial block electron microscopy collections}, journal = {Bioinform.}, volume = {33}, number = {19}, pages = {3145--3147}, year = {2017}, url = {https://doi.org/10.1093/bioinformatics/btx376}, doi = {10.1093/BIOINFORMATICS/BTX376}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ChurasPHWLPE17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/FalkenbergASDCH17, author = {Cibele Vieira Falkenberg and Evren U. Azeloglu and Mark Stothers and Thomas J. Deerinck and Yibang Chen and John C. He and Mark H. Ellisman and James C. Hone and Ravi Iyengar and Leslie M. Loew}, title = {Fragility of foot process morphology in kidney podocytes arises from chaotic spatial propagation of cytoskeletal instability}, journal = {PLoS Comput. Biol.}, volume = {13}, number = {3}, year = {2017}, url = {https://doi.org/10.1371/journal.pcbi.1005433}, doi = {10.1371/JOURNAL.PCBI.1005433}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/FalkenbergASDCH17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iccS/LawrenceKPE16, author = {Albert F. Lawrence and Tsvi Katchalski and Alex J. Perez and Mark H. Ellisman}, editor = {Michelle Connolly}, title = {Biological Systems Through the Informational Lens}, booktitle = {International Conference on Computational Science 2016, {ICCS} 2016, 6-8 June 2016, San Diego, California, {USA}}, series = {Procedia Computer Science}, volume = {80}, pages = {650--661}, publisher = {Elsevier}, year = {2016}, url = {https://doi.org/10.1016/j.procs.2016.05.355}, doi = {10.1016/J.PROCS.2016.05.355}, timestamp = {Thu, 08 Jul 2021 16:04:01 +0200}, biburl = {https://dblp.org/rec/conf/iccS/LawrenceKPE16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/RajagopalBWCPHS15, author = {Vijay Rajagopal and Gregory Bass and Cameron G. Walker and David J. Crossman and Amorita Petzer and Anthony Hickey and Ivo Siekmann and Masahiko Hoshijima and Mark H. Ellisman and Edmund J. Crampin and Christian Soeller}, title = {Examination of the Effects of Heterogeneous Organization of RyR Clusters, Myofibrils and Mitochondria on Ca\({}^{\mbox{2+}}\) Release Patterns in Cardiomyocytes}, journal = {PLoS Comput. Biol.}, volume = {11}, number = {9}, year = {2015}, url = {https://doi.org/10.1371/journal.pcbi.1004417}, doi = {10.1371/JOURNAL.PCBI.1004417}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/RajagopalBWCPHS15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/3dui/MoreheadJBHSDEDS14, author = {Michael Morehead and Quinn Jones and Jared Blatt and Paul Holcomb and J{\"{u}}rgen P. Schultz and Thomas A. DeFanti and Mark H. Ellisman and Gianfranco Doretto and George A. Spirou}, editor = {Anatole L{\'{e}}cuyer and Rob Lindeman and Frank Steinicke}, title = {Poster: BrainTrek - An immersive environment for investigating neuronal tissue}, booktitle = {{IEEE} Symposium on 3D User Interfaces, 3DUI 2014, Minneapolis, MN, USA, March 29-30, 2014}, pages = {157--158}, publisher = {{IEEE} Computer Society}, year = {2014}, url = {https://doi.org/10.1109/3DUI.2014.6798868}, doi = {10.1109/3DUI.2014.6798868}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/3dui/MoreheadJBHSDEDS14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iccS/ChenWAWCPLE14, author = {Ruijuan Chen and Xiaohua Wan and Ilkay Altintas and Jianwu Wang and Daniel Crawl and Sebastien Phan and Albert F. Lawrence and Mark H. Ellisman}, editor = {David Abramson and Michael Lees and Valeria V. Krzhizhanovskaya and Jack J. Dongarra and Peter M. A. Sloot}, title = {EPiK-a Workflow for Electron Tomography in Kepler}, booktitle = {Proceedings of the International Conference on Computational Science, {ICCS} 2014, Cairns, Queensland, Australia, 10-12 June, 2014}, series = {Procedia Computer Science}, volume = {29}, pages = {2295--2305}, publisher = {Elsevier}, year = {2014}, url = {https://doi.org/10.1016/j.procs.2014.05.214}, doi = {10.1016/J.PROCS.2014.05.214}, timestamp = {Tue, 20 Jun 2023 16:27:45 +0200}, biburl = {https://dblp.org/rec/conf/iccS/ChenWAWCPLE14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/GiulyKE13, author = {Richard J. Giuly and Keun{-}Young Kim and Mark H. Ellisman}, title = {{DP2:} Distributed 3D image segmentation using micro-labor workforce}, journal = {Bioinform.}, volume = {29}, number = {10}, pages = {1359--1360}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt154}, doi = {10.1093/BIOINFORMATICS/BTT154}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/GiulyKE13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/OrloffIMEK13, author = {David N. Orloff and Janet H. Iwasa and Maryann E. Martone and Mark H. Ellisman and Caroline M. Kane}, title = {The cell: an image library-CCDB: a curated repository of microscopy data}, journal = {Nucleic Acids Res.}, volume = {41}, number = {Database-Issue}, pages = {1241--1250}, year = {2013}, url = {https://doi.org/10.1093/nar/gks1257}, doi = {10.1093/NAR/GKS1257}, timestamp = {Sun, 17 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/OrloffIMEK13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ni/JurrusWGPEJT13, author = {Elizabeth Jurrus and Shigeki Watanabe and Richard J. Giuly and Ant{\'{o}}nio R. C. Paiva and Mark H. Ellisman and Erik M. Jorgensen and Tolga Tasdizen}, title = {Semi-Automated Neuron Boundary Detection and Nonbranching Process Segmentation in Electron Microscopy Images}, journal = {Neuroinformatics}, volume = {11}, number = {1}, pages = {5--29}, year = {2013}, url = {https://doi.org/10.1007/s12021-012-9149-y}, doi = {10.1007/S12021-012-9149-Y}, timestamp = {Sat, 19 Oct 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ni/JurrusWGPEJT13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/siamsc/WanPLZHLE13, author = {Xiaohua Wan and Sebastien Phan and Albert F. Lawrence and Fa Zhang and Renmin Han and Zhiyong Liu and Mark H. Ellisman}, title = {Iterative Methods in Large Field Electron Microscope Tomography}, journal = {{SIAM} J. Sci. Comput.}, volume = {35}, number = {5}, year = {2013}, url = {https://doi.org/10.1137/120881464}, doi = {10.1137/120881464}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/siamsc/WanPLZHLE13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icip/LiuSET13, author = {Ting Liu and Mojtaba Seyedhosseini and Mark H. Ellisman and Tolga Tasdizen}, title = {Watershed merge forest classification for electron microscopy image stack segmentation}, booktitle = {{IEEE} International Conference on Image Processing, {ICIP} 2013, Melbourne, Australia, September 15-18, 2013}, pages = {4069--4073}, publisher = {{IEEE}}, year = {2013}, url = {https://doi.org/10.1109/ICIP.2013.6738838}, doi = {10.1109/ICIP.2013.6738838}, timestamp = {Tue, 10 May 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/icip/LiuSET13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbi/SeyedhosseiniET13, author = {Mojtaba Seyedhosseini and Mark H. Ellisman and Tolga Tasdizen}, title = {Segmentation of mitochondria in electron microscopy images using algebraic curves}, booktitle = {10th {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro, {ISBI} 2013, 7-11 April, 2013, San Francisco, CA, USA, Proceedings}, pages = {860--863}, publisher = {{IEEE}}, year = {2013}, url = {https://doi.org/10.1109/ISBI.2013.6556611}, doi = {10.1109/ISBI.2013.6556611}, timestamp = {Wed, 04 Oct 2023 17:01:25 +0200}, biburl = {https://dblp.org/rec/conf/isbi/SeyedhosseiniET13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbi/JonesLET13, author = {Cory Jay Jones and Ting Liu and Mark H. Ellisman and Tolga Tasdizen}, title = {Semi-automatic neuron segmentation in electron microscopy images via sparse labeling}, booktitle = {10th {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro, {ISBI} 2013, 7-11 April, 2013, San Francisco, CA, USA, Proceedings}, pages = {1304--1307}, publisher = {{IEEE}}, year = {2013}, url = {https://doi.org/10.1109/ISBI.2013.6556771}, doi = {10.1109/ISBI.2013.6556771}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/isbi/JonesLET13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbi/JonesSET13, author = {Cory Jay Jones and Mojtaba Seyedhosseini and Mark H. Ellisman and Tolga Tasdizen}, title = {Neuron segmentation in electron microscopy images using partial differential equations}, booktitle = {10th {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro, {ISBI} 2013, 7-11 April, 2013, San Francisco, CA, USA, Proceedings}, pages = {1457--1460}, publisher = {{IEEE}}, year = {2013}, url = {https://doi.org/10.1109/ISBI.2013.6556809}, doi = {10.1109/ISBI.2013.6556809}, timestamp = {Tue, 10 May 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/isbi/JonesSET13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GiulyME12, author = {Richard J. Giuly and Maryann E. Martone and Mark H. Ellisman}, title = {Method: automatic segmentation of mitochondria utilizing patch classification, contour pair classification, and automatically seeded level sets}, journal = {{BMC} Bioinform.}, volume = {13}, pages = {29}, year = {2012}, url = {https://doi.org/10.1186/1471-2105-13-29}, doi = {10.1186/1471-2105-13-29}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/GiulyME12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icpr/LiuJSET12, author = {Ting Liu and Elizabeth Jurrus and Mojtaba Seyedhosseini and Mark H. Ellisman and Tolga Tasdizen}, title = {Watershed merge tree classification for electron microscopy image segmentation}, booktitle = {Proceedings of the 21st International Conference on Pattern Recognition, {ICPR} 2012, Tsukuba, Japan, November 11-15, 2012}, pages = {133--137}, publisher = {{IEEE} Computer Society}, year = {2012}, url = {https://ieeexplore.ieee.org/document/6460090/}, timestamp = {Tue, 10 May 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/icpr/LiuJSET12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/tamc/LawrencePE12, author = {Albert F. Lawrence and Sebastien Phan and Mark H. Ellisman}, editor = {Manindra Agrawal and S. Barry Cooper and Angsheng Li}, title = {Electron Tomography and Multiscale Biology}, booktitle = {Theory and Applications of Models of Computation - 9th Annual Conference, {TAMC} 2012, Beijing, China, May 16-21, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7287}, pages = {109--130}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-29952-0\_16}, doi = {10.1007/978-3-642-29952-0\_16}, timestamp = {Tue, 14 May 2019 10:00:46 +0200}, biburl = {https://dblp.org/rec/conf/tamc/LawrencePE12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:journals/procedia/AstakhovBGKGBMRPTWHKME12, author = {Vadim Astakhov and Anita E. Bandrowski and Amarnath Gupta and A. W. Kulungowski and Jeffrey S. Grethe and James Bouwer and T. Molin and V. Rowley and S. Penticoff and Masako Terada and W. Wong and Hiroyuki Hakozaki and O. Kwon and Maryann E. Martone and Mark H. Ellisman}, editor = {Hesham H. Ali and Yong Shi and Deepak Khazanchi and Michael Lees and G. Dick van Albada and Jack J. Dongarra and Peter M. A. Sloot}, title = {Prototype of Kepler Processing Workflows For Microscopy And Neuroinformatics}, booktitle = {Proceedings of the International Conference on Computational Science, {ICCS} 2012, Omaha, Nebraska, USA, 4-6 June, 2012}, series = {Procedia Computer Science}, volume = {9}, pages = {1595--1603}, publisher = {Elsevier}, year = {2012}, url = {https://doi.org/10.1016/j.procs.2012.04.175}, doi = {10.1016/J.PROCS.2012.04.175}, timestamp = {Thu, 08 Jul 2021 16:04:01 +0200}, biburl = {https://dblp.org/rec/journals/procedia/AstakhovBGKGBMRPTWHKME12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/SunCLALPSAEGW11, author = {Shulei Sun and Jing Chen and Weizhong Li and Ilkay Altintas and Abel W. Lin and Steven Peltier and Karen I. Stocks and Eric E. Allen and Mark H. Ellisman and Jeffrey S. Grethe and John C. Wooley}, title = {Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the {CAMERA} resource}, journal = {Nucleic Acids Res.}, volume = {39}, number = {Database-Issue}, pages = {546--551}, year = {2011}, url = {https://doi.org/10.1093/nar/gkq1102}, doi = {10.1093/NAR/GKQ1102}, timestamp = {Sun, 17 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/SunCLALPSAEGW11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icbo/MungallABCCCCDEEGKILMMTTTTWH11, author = {Chris Mungall and David Anderson and Anita E. Bandrowski and Brian A. Canada and Andrew Chatr{-}aryamontri and Keith C. Cheng and P. Michael Conn and Kara Dolinski and Mark H. Ellisman and Janan T. Eppig and Jeffrey S. Grethe and Joseph W. Kemnitz and Shawn Iadonato and Stephen D. Larson and Charles Magness and Maryann E. Martone and Mike Tyers and Carlo Torniai and Olga G. Troyanskaya and Judith Turner and Monte Westerfield and Melissa A. Haendel}, editor = {Olivier Bodenreider and Maryann E. Martone and Alan Ruttenberg}, title = {An Ontology-Based Approach to Linking Model Organisms and Resources to Human Diseases}, booktitle = {Proceedings of the 2nd International Conference on Biomedical Ontology, Buffalo, NY, USA, July 26-30, 2011}, series = {{CEUR} Workshop Proceedings}, volume = {833}, publisher = {CEUR-WS.org}, year = {2011}, url = {https://ceur-ws.org/Vol-833/paper43.pdf}, timestamp = {Fri, 10 Mar 2023 16:22:24 +0100}, biburl = {https://dblp.org/rec/conf/icbo/MungallABCCCCDEEGKILMMTTTTWH11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/SeyedhosseiniKJGEPT11, author = {Mojtaba Seyedhosseini and Ritwik Kumar and Elizabeth Jurrus and Rick Giuly and Mark H. Ellisman and Hanspeter Pfister and Tolga Tasdizen}, editor = {Gabor Fichtinger and Anne L. Martel and Terry M. Peters}, title = {Detection of Neuron Membranes in Electron Microscopy Images Using Multi-scale Context and Radon-Like Features}, booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI} 2011 - 14th International Conference, Toronto, Canada, September 18-22, 2011, Proceedings, Part {I}}, series = {Lecture Notes in Computer Science}, volume = {6891}, pages = {670--677}, publisher = {Springer}, year = {2011}, url = {https://doi.org/10.1007/978-3-642-23623-5\_84}, doi = {10.1007/978-3-642-23623-5\_84}, timestamp = {Tue, 10 May 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miccai/SeyedhosseiniKJGEPT11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:books/sp/wilde2011/LinACGGE11, author = {Abel W. Lin and Ilkay Altintas and Chris Churas and Madhusudan Gujral and Jeffrey S. Grethe and Mark H. Ellisman}, editor = {Erik Wilde and Cesare Pautasso}, title = {Case Study on the Use of {REST} Architectural Principles for Scientific Analysis: {CAMERA} - Community Cyberinfrastructure for Advanced Microbial Ecology Research and Analysis}, booktitle = {{REST:} From Research to Practice}, pages = {319--338}, publisher = {Springer}, year = {2011}, url = {https://doi.org/10.1007/978-1-4419-8303-9\_14}, doi = {10.1007/978-1-4419-8303-9\_14}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/books/sp/wilde2011/LinACGGE11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/services/AltintasLCCGSLMSGE10, author = {Ilkay Altintas and Abel W. Lin and Jing Chen and Chris Churas and Madhusudan Gujral and Shulei Sun and Weizhong Li and Ramil Manansala and Mayya Sedova and Jeffrey S. Grethe and Mark H. Ellisman}, title = {{CAMERA} 2.0: {A} Data-centric Metagenomics Community Infrastructure Driven by Scientific Workflows}, booktitle = {6th World Congress on Services, {SERVICES} 2010, Miami, Florida, USA, July 5-10, 2010}, pages = {352--359}, publisher = {{IEEE} Computer Society}, year = {2010}, url = {https://doi.org/10.1109/SERVICES.2010.89}, doi = {10.1109/SERVICES.2010.89}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/services/AltintasLCCGSLMSGE10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/cb/MartoneZGMTWFLE08, author = {Maryann E. Martone and Ilya Zaslavsky and Amarnath Gupta and Asif Memon and Joshua Tran and Willy Wong and Lisa Fong and Stephen D. Larson and Mark H. Ellisman}, editor = {Albert Burger and Duncan Davidson and Richard A. Baldock}, title = {The Smart Atlas: Spatial and Semantic Strategies for Multiscale Integration of Brain Data}, booktitle = {Anatomy Ontologies for Bioinformatics, Principles and Practice}, series = {Computational Biology}, volume = {6}, pages = {267--286}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-1-84628-885-2\_13}, doi = {10.1007/978-1-84628-885-2\_13}, timestamp = {Thu, 13 Jun 2019 09:41:49 +0200}, biburl = {https://dblp.org/rec/series/cb/MartoneZGMTWFLE08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/computer/GilDEFFGGLMM07, author = {Yolanda Gil and Ewa Deelman and Mark H. Ellisman and Thomas Fahringer and Geoffrey C. Fox and Dennis Gannon and Carole A. Goble and Miron Livny and Luc Moreau and Jim Myers}, title = {Examining the Challenges of Scientific Workflows}, journal = {Computer}, volume = {40}, number = {12}, pages = {24--32}, year = {2007}, url = {https://doi.org/10.1109/MC.2007.421}, doi = {10.1109/MC.2007.421}, timestamp = {Sun, 25 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/computer/GilDEFFGGLMM07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:books/sp/07/LinPGE07, author = {Abel W. Lin and Steven T. Peltier and Jeffrey S. Grethe and Mark H. Ellisman}, editor = {Ian J. Taylor and Ewa Deelman and Dennis B. Gannon and Matthew S. Shields}, title = {Case Studies on the Use of Workflow Technologies for Scientific Analysis: The Biomedical Informatics Research Network and the Telescience Project}, booktitle = {Workflows for e-Science, Scientific Workflows for Grids}, pages = {109--125}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-1-84628-757-2\_8}, doi = {10.1007/978-1-84628-757-2\_8}, timestamp = {Sun, 02 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/books/sp/07/LinPGE07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/cm/TaesombotUCSDPL06, author = {N. Taesombot and Frank C. Uyeda and Andrew A. Chien and Larry Smarr and Thomas A. DeFanti and Philip M. Papadopoulos and Jason Leigh and Mark H. Ellisman and John A. Orcutt}, title = {The OptIPuter: high-performance, QoS-guaranteed network service for emerging E-science applications}, journal = {{IEEE} Commun. Mag.}, volume = {44}, number = {5}, pages = {38--45}, year = {2006}, url = {https://doi.org/10.1109/MCOM.2006.1637945}, doi = {10.1109/MCOM.2006.1637945}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/cm/TaesombotUCSDPL06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/fgcs/SinghSTLJRLWONPMNLE06, author = {Rajvikram Singh and Nicholas Schwarz and Nut Taesombut and David Lee and Byungil Jeong and Luc Renambot and Abel W. Lin and Ruth West and Hiromu Otsuka and Sei Naito and Steven Peltier and Maryann E. Martone and Kazunori Nozaki and Jason Leigh and Mark H. Ellisman}, title = {Real-time multi-scale brain data acquisition, assembly, and analysis using an end-to-end OptIPuter}, journal = {Future Gener. Comput. Syst.}, volume = {22}, number = {8}, pages = {1032--1039}, year = {2006}, url = {https://doi.org/10.1016/j.future.2006.03.017}, doi = {10.1016/J.FUTURE.2006.03.017}, timestamp = {Wed, 19 Feb 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/fgcs/SinghSTLJRLWONPMNLE06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ni/PriceCMHPME06, author = {Diana L. Price and Sunny K. Chow and Natalie A. B. MacLean and Hiroyuki Hakozaki and Steven Peltier and Maryann E. Martone and Mark H. Ellisman}, title = {High-resolution large-scale mosaic imaging using multiphoton microscopy to characterize transgenic mouse models of human neurological disorders}, journal = {Neuroinformatics}, volume = {4}, number = {1}, pages = {65--80}, year = {2006}, url = {https://doi.org/10.1385/NI:4:1:65}, doi = {10.1385/NI:4:1:65}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ni/PriceCMHPME06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cbms/AstakhovGGRLYQSME06, author = {Vadim Astakhov and Amarnath Gupta and Jeffrey S. Grethe and Edward Ross and David Little and Aylin Yilmaz and Xufei Qian and Simone Santini and Maryann E. Martone and Mark H. Ellisman}, title = {Semantically Based Data Integration Environment for Biomedical Research}, booktitle = {19th {IEEE} International Symposium on Computer-Based Medical Systems {(CBMS} 2006), 22-23 June 2006, Salt Lake City, Utah, {USA}}, pages = {171--176}, publisher = {{IEEE} Computer Society}, year = {2006}, url = {https://doi.org/10.1109/CBMS.2006.143}, doi = {10.1109/CBMS.2006.143}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cbms/AstakhovGGRLYQSME06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/clade/LathersSKLMPDE06, author = {Adam Lathers and Mei{-}Hui Su and A. W. Kulungowski and Abel W. Lin and Gaurang Mehta and Steven Peltier and Ewa Deelman and Mark H. Ellisman}, title = {Enabling parallel scientific applications with workflow tools}, booktitle = {2006 {IEEE} Challenges of Large Applications in Distributed Environments, CLADE@HPDC 2006, Paris, France, June 19, 2006}, pages = {55--60}, publisher = {{IEEE} Computer Society}, year = {2006}, url = {https://doi.org/10.1109/CLADE.2006.1652055}, doi = {10.1109/CLADE.2006.1652055}, timestamp = {Wed, 16 Oct 2019 14:14:54 +0200}, biburl = {https://dblp.org/rec/conf/clade/LathersSKLMPDE06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbi/KikinisKSGE06, author = {Ron Kikinis and Tina Kapur and Martha Elizabeth Shenton and Jeffrey S. Grethe and Mark H. Ellisman}, title = {"Big Science" and Schizophrenia}, booktitle = {Proceedings of the 2006 {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro, Arlington, VA, USA, 6-9 April 2006}, pages = {804--805}, publisher = {{IEEE}}, year = {2006}, url = {https://doi.org/10.1109/ISBI.2006.1625039}, doi = {10.1109/ISBI.2006.1625039}, timestamp = {Wed, 04 Oct 2023 17:01:25 +0200}, biburl = {https://dblp.org/rec/conf/isbi/KikinisKSGE06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ni/SosinskyDGBBE05, author = {Gina E. Sosinsky and Thomas J. Deerinck and Rocco Greco and Casey H. Buitenhuys and Thomas M. Bartol and Mark H. Ellisman}, title = {Development of a model for microphysiological simulations - Small nodes of ranvier from peripheral nerves of mice reconstructed by electron tomography}, journal = {Neuroinformatics}, volume = {3}, number = {2}, pages = {133--162}, year = {2005}, url = {https://doi.org/10.1385/NI:3:2:133}, doi = {10.1385/NI:3:2:133}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ni/SosinskyDGBBE05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cbms/LinDUPE05, author = {Abel W. Lin and Lu Dai and Khim Ung and Steven Peltier and Mark H. Ellisman}, title = {The Telescience Project: Application to Middleware Interaction Components}, booktitle = {18th {IEEE} Symposium on Computer-Based Medical Systems {(CBMS} 2005), 23-24 June 2005, Dublin, Ireland}, pages = {543--548}, publisher = {{IEEE} Computer Society}, year = {2005}, url = {https://doi.org/10.1109/CBMS.2005.99}, doi = {10.1109/CBMS.2005.99}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cbms/LinDUPE05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ccgrid/AkiyamaNKSPLMYLEYM05, author = {Toyokazu Akiyama and Kazunori Nozaki and Seiichi Kato and Shinji Shimojo and Steven Peltier and Abel W. Lin and Tomas E. Molina and George Yang and David Lee and Mark H. Ellisman and Kiyokazu Yoshida and Hirotaro Mori}, title = {Scientific grid activities in Cybermedia Center, Osaka University}, booktitle = {5th International Symposium on Cluster Computing and the Grid (CCGrid 2005), 9-12 May, 2005, Cardiff, {UK}}, pages = {463--470}, publisher = {{IEEE} Computer Society}, year = {2005}, url = {https://doi.org/10.1109/CCGRID.2005.1558591}, doi = {10.1109/CCGRID.2005.1558591}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/ccgrid/AkiyamaNKSPLMYLEYM05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/eScience/LinDUMPE05, author = {Abel W. Lin and Lu Dai and Khim Ung and Jeff Mock and Steven Peltier and Mark H. Ellisman}, title = {The Telescience Tools: Version 2.0}, booktitle = {First International Conference on e-Science and Grid Technologies (e-Science 2005), 5-8 December 2005, Melbourne, Australia}, pages = {56--63}, publisher = {{IEEE} Computer Society}, year = {2005}, url = {https://doi.org/10.1109/E-SCIENCE.2005.82}, doi = {10.1109/E-SCIENCE.2005.82}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/eScience/LinDUMPE05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/eScience/MolinaYLPE05, author = {Tomas E. Molina and George Yang and Abel W. Lin and Steven Peltier and Mark H. Ellisman}, title = {A Generalized Service-Oriented Architecture for Remote Control of Scientific Imaging Instruments}, booktitle = {First International Conference on e-Science and Grid Technologies (e-Science 2005), 5-8 December 2005, Melbourne, Australia}, pages = {550--556}, publisher = {{IEEE} Computer Society}, year = {2005}, url = {https://doi.org/10.1109/E-SCIENCE.2005.4}, doi = {10.1109/E-SCIENCE.2005.4}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/eScience/MolinaYLPE05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/healthgrid/GretheBGJLMPPRSZE05, author = {Jeffrey S. Grethe and Chaitan Baru and Amarnath Gupta and Mark James and Bertram Lud{\"{a}}scher and Maryann E. Martone and Philip M. Papadopoulos and Steven Peltier and Arcot Rajasekar and Simone Santini and Ilya Zaslavsky and Mark H. Ellisman}, editor = {Tony Solomonides and Richard McClatchey and Vincent Breton and Yannick Legr{\'{e}} and Sofie N{\o}rager}, title = {Biomedical Informatics Research Network: Building a National Collaboratory to Hasten the Derivation of New Understanding and Treatment of Disease}, booktitle = {From Grid to Healthgrid - Proceedings of Healthgrid 2005, Oxford, UK, 7-9 April 2005}, series = {Studies in Health Technology and Informatics}, volume = {112}, pages = {100--109}, publisher = {{IOS} Press}, year = {2005}, url = {http://www.booksonline.iospress.nl/Content/View.aspx?piid=4235}, timestamp = {Mon, 13 Oct 2014 14:37:15 +0200}, biburl = {https://dblp.org/rec/conf/healthgrid/GretheBGJLMPPRSZE05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/cacm/EllismanBHLMS04, author = {Mark H. Ellisman and Michael Brady and David Hart and Fang{-}Pang Lin and Matthias S. M{\"{u}}ller and Larry Smarr}, title = {The emerging role of biogrids}, journal = {Commun. {ACM}}, volume = {47}, number = {11}, pages = {52--57}, year = {2004}, url = {https://doi.org/10.1145/1029496.1029526}, doi = {10.1145/1029496.1029526}, timestamp = {Wed, 25 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/cacm/EllismanBHLMS04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijhpca/CasanovaBBGSBDMEFOWPS04, author = {Henri Casanova and Francine Berman and Thomas M. Bartol and Erhan Gokcay and Terrence J. Sejnowski and Adam Birnbaum and Jack J. Dongarra and Michelle Miller and Mark H. Ellisman and Marcio Faerman and Graziano Obertelli and Richard Wolski and Stuart M. Pomerantz and Joel R. Stiles}, title = {The Virtual Instrument: Support for Grid-Enabled Mcell Simulations}, journal = {Int. J. High Perform. Comput. Appl.}, volume = {18}, number = {1}, pages = {3--17}, year = {2004}, url = {https://doi.org/10.1177/1094342004041290}, doi = {10.1177/1094342004041290}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ijhpca/CasanovaBBGSBDMEFOWPS04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:books/mk/04/EllismanP04, author = {Mark H. Ellisman and Steven Peltier}, editor = {Ian T. Foster and Carl Kesselman}, title = {Medical Data Federation}, booktitle = {The Grid 2 - Blueprint for a New Computing Infrastructure, Second Edition}, series = {The Morgan Kaufmann Series in Computer Architecture and Design}, pages = {109--120}, publisher = {Morgan Kaufmann}, year = {2004}, url = {https://doi.org/10.1016/b978-155860933-4/50012-2}, doi = {10.1016/B978-155860933-4/50012-2}, timestamp = {Mon, 18 May 2020 15:59:19 +0200}, biburl = {https://dblp.org/rec/books/mk/04/EllismanP04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/cacm/NewmanEO03, author = {Harvey B. Newman and Mark H. Ellisman and John A. Orcutt}, title = {Data-intensive e-science frontier research}, journal = {Commun. {ACM}}, volume = {46}, number = {11}, pages = {68--77}, year = {2003}, url = {https://doi.org/10.1145/948383.948411}, doi = {10.1145/948383.948411}, timestamp = {Fri, 14 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/cacm/NewmanEO03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/cbsn/ViirreE03, author = {Erik Viirre and Mark H. Ellisman}, title = {Vertigo in Virtual Reality with Haptics: Case Report}, journal = {Cyberpsychology Behav. Soc. Netw.}, volume = {6}, number = {4}, pages = {429--431}, year = {2003}, url = {https://doi.org/10.1089/109493103322278826}, doi = {10.1089/109493103322278826}, timestamp = {Tue, 31 Mar 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/cbsn/ViirreE03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/fgcs/LeeLHASLPE03, author = {David Lee and Abel W. Lin and Thomas Hutton and Toyokazu Akiyama and Shinji Shimojo and Fang{-}Pang Lin and Steven Peltier and Mark H. Ellisman}, title = {Global Telescience featuring IPv6 at iGrid2002}, journal = {Future Gener. Comput. Syst.}, volume = {19}, number = {6}, pages = {1031--1039}, year = {2003}, url = {https://doi.org/10.1016/S0167-739X(03)00080-3}, doi = {10.1016/S0167-739X(03)00080-3}, timestamp = {Wed, 19 Feb 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/fgcs/LeeLHASLPE03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jpdc/PeltierLLMLMWDME03, author = {Steven Peltier and Abel W. Lin and David Lee and Stephen A. Mock and Stephan Lamont and Tomas E. Molina and Mona Wong and Lu Dai and Maryann E. Martone and Mark H. Ellisman}, title = {The Telescience Portal for advanced tomography applications}, journal = {J. Parallel Distributed Comput.}, volume = {63}, number = {5}, pages = {539--550}, year = {2003}, url = {https://doi.org/10.1016/S0743-7315(03)00061-3}, doi = {10.1016/S0743-7315(03)00061-3}, timestamp = {Sat, 22 Feb 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jpdc/PeltierLLMLMWDME03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ni/MartoneZGQHPWSE03, author = {Maryann E. Martone and Shenglan Zhang and Amarnath Gupta and Xufei Qian and Haiyun He and Diana L. Price and Mona Wong and Simone Santini and Mark H. Ellisman}, title = {The cell-centered database - {A} database for multiscale structural and protein localization data from light and electron microscopy}, journal = {Neuroinformatics}, volume = {1}, number = {4}, pages = {379--395}, year = {2003}, url = {https://doi.org/10.1385/NI:1:4:379}, doi = {10.1385/NI:1:4:379}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ni/MartoneZGQHPWSE03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/parco/StilesFPDEBS03, author = {Joel R. Stiles and W. C. Ford and J. M. Pattillo and Thomas E. Deerinck and Mark H. Ellisman and Thomas M. Bartol and Terrence J. Sejnowski}, editor = {Gerhard R. Joubert and Wolfgang E. Nagel and Frans J. Peters and Wolfgang V. Walter}, title = {Spatially Realistic Computational Physiology: Past, Present and Future}, booktitle = {Parallel Computing: Software Technology, Algorithms, Architectures and Applications, {PARCO} 2003, Dresden, Germany}, series = {Advances in Parallel Computing}, volume = {13}, pages = {685--694}, publisher = {Elsevier}, year = {2003}, timestamp = {Mon, 03 Jun 2013 17:22:02 +0200}, biburl = {https://dblp.org/rec/conf/parco/StilesFPDEBS03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/vecpar/FernandezLRGEC02, author = {Jos{\'{e}}{-}Jes{\'{u}}s Fern{\'{a}}ndez and Albert F. Lawrence and Javier Roca Piera and Inmaculada Garc{\'{\i}}a and Mark H. Ellisman and Jos{\'{e}} Mar{\'{\i}}a Carazo}, editor = {Jos{\'{e}} M. Laginha M. Palma and Jack J. Dongarra and Vicente Hern{\'{a}}ndez and Ant{\'{o}}nio Augusto de Sousa}, title = {High Performance Computing in Electron Microscope Tomography of Complex Biological Structures}, booktitle = {High Performance Computing for Computational Science - {VECPAR} 2002, 5th International Conference, Porto, Portugal, June 26-28, 2002, Selected Papers and Invited Talks}, series = {Lecture Notes in Computer Science}, volume = {2565}, pages = {166--180}, publisher = {Springer}, year = {2002}, url = {https://doi.org/10.1007/3-540-36569-9\_11}, doi = {10.1007/3-540-36569-9\_11}, timestamp = {Tue, 14 May 2019 10:00:36 +0200}, biburl = {https://dblp.org/rec/conf/vecpar/FernandezLRGEC02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/hcw/SmallenCFBWSKYE00, author = {Shava Smallen and Walfredo Cirne and Jaime Frey and Francine Berman and Richard Wolski and Mei{-}Hui Su and Carl Kesselman and Stephen J. Young and Mark H. Ellisman}, title = {Combining Workstations and Supercomputers to Support Grid Applications: The Parallel Tomography Experience}, booktitle = {9th Heterogeneous Computing Workshop, {HCW} 2000, Cancun, Mexico, May 1, 2000}, pages = {241--252}, publisher = {{IEEE} Computer Society}, year = {2000}, url = {https://doi.org/10.1109/HCW.2000.843748}, doi = {10.1109/HCW.2000.843748}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/hcw/SmallenCFBWSKYE00.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/cacm/MoorePE98, author = {Reagan W. Moore and Thomas A. Prince and Mark H. Ellisman}, title = {Data-Intensive Computing and Digital Libraries}, journal = {Commun. {ACM}}, volume = {41}, number = {11}, pages = {56--62}, year = {1998}, url = {https://doi.org/10.1145/287831.287840}, doi = {10.1145/287831.287840}, timestamp = {Tue, 24 May 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/cacm/MoorePE98.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijhpca/YoungFHLEHHDHKWGKE96, author = {Stephen J. Young and Gary Guo You Fan and David Hessler and Stephan Lamont and T. Todd Elvins and Martin Hadida{-}Hassan and Gary Hanyzewski and James W. Durkin and Philip M. Hubbard and Gordon L. Kindlmann and Eric Wong and Donald P. Greenberg and Sidney Karin and Mark H. Ellisman}, title = {Implementing a Collaboratory for Microscopic Digital Anatomy}, journal = {Int. J. High Perform. Comput. Appl.}, volume = {10}, number = {2-3}, pages = {170--181}, year = {1996}, url = {https://doi.org/10.1177/109434209601000205}, doi = {10.1177/109434209601000205}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ijhpca/YoungFHLEHHDHKWGKE96.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/cacm/MercurioEYCFE92, author = {Philip J. Mercurio and T. Todd Elvins and Stephen J. Young and Philip S. Cohen and Kevin R. Fall and Mark H. Ellisman}, title = {The Distributed Laboratory - An Interactive Visualization Environment for Electron Microscopy and 3D Imaging}, journal = {Commun. {ACM}}, volume = {35}, number = {6}, pages = {54--63}, year = {1992}, url = {https://doi.org/10.1145/129888.129891}, doi = {10.1145/129888.129891}, timestamp = {Tue, 06 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/cacm/MercurioEYCFE92.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
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