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ORCIDBibTeX records: Toby J. Gibson
@article{DBLP:journals/ploscb/ZekeGD24,
author = {Andr{\'{a}}s Zeke and
Toby J. Gibson and
Laszlo Dobson},
title = {Linear motifs regulating protein secretion, sorting and autophagy
in Leishmania parasites are diverged with respect to their host equivalents},
journal = {PLoS Comput. Biol.},
volume = {20},
number = {2},
year = {2024},
url = {https://doi.org/10.1371/journal.pcbi.1011902},
doi = {10.1371/JOURNAL.PCBI.1011902},
timestamp = {Sat, 16 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ploscb/ZekeGD24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/TusnadyZKFRGD23,
author = {G{\'{a}}bor E. Tusn{\'{a}}dy and
Andr{\'{a}}s Zeke and
Zsofia E. Kalman and
Marie Fatoux{-}Ardore and
Sylvie Ricard{-}Blum and
Toby J. Gibson and
Laszlo Dobson},
title = {LeishMANIAdb: a comparative resource for \emph{Leishmania} proteins},
journal = {Database J. Biol. Databases Curation},
volume = {2023},
year = {2023},
url = {https://doi.org/10.1093/database/baad074},
doi = {10.1093/DATABASE/BAAD074},
timestamp = {Tue, 28 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/TusnadyZKFRGD23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KumarMVMSZDLONF22,
author = {Manjeet Kumar and
Sushama Michael and
Jes{\'{u}}s Alvarado Valverde and
B{\'{a}}lint M{\'{e}}sz{\'{a}}ros and
Hugo S{\'{a}}mano{-}S{\'{a}}nchez and
Andr{\'{a}}s Zeke and
Laszlo Dobson and
Tamas Lazar and
Mihkel {\"{O}}rd and
Anurag Nagpal and
Nazanin Farahi and
Melanie K{\"{a}}ser and
Ramya Kraleti and
Norman E. Davey and
Rita Pancsa and
Luc{\'{\i}}a B. Chemes and
Toby J. Gibson},
title = {The Eukaryotic Linear Motif resource: 2022 release},
journal = {Nucleic Acids Res.},
volume = {50},
number = {{D1}},
pages = {497--508},
year = {2022},
url = {https://doi.org/10.1093/nar/gkab975},
doi = {10.1093/NAR/GKAB975},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KumarMVMSZDLONF22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/VaradiAABCDNNPT22,
author = {Mihaly Varadi and
Stephen Anyango and
David R. Armstrong and
John M. Berrisford and
Preeti Choudhary and
Mandar S. Deshpande and
Nurul Nadzirin and
Sreenath Nair and
Luk{\'{a}}s Pravda and
Ahsan Tanweer and
Bissan Al{-}Lazikani and
Claudia Andreini and
Geoffrey J. Barton and
David Bednar and
Karel Berka and
Tom L. Blundell and
Kelly Brock and
Jos{\'{e}} Mar{\'{\i}}a Carazo and
Jir{\'{\i}} Damborsk{\'{y}} and
Alessia David and
Sucharita Dey and
Roland L. Dunbrack Jr. and
Juan Fern{\'{a}}ndez{-}Recio and
Franca Fraternali and
Toby J. Gibson and
Manuela Helmer{-}Citterich and
David Hoksza and
Thomas A. Hopf and
David Jakubec and
Natarajan Kannan and
Radoslav Kriv{\'{a}}k and
Manjeet Kumar and
Emmanuel D. Levy and
Nir London and
Jos{\'{e}} Ram{\'{o}}n Mac{\'{\i}}as and
Mallur Srivatsan Madhusudhan and
Debora S. Marks and
Lennart Martens and
Stuart A McGowan and
Jake E. McGreig and
Vivek Modi and
R. Gonzalo Parra and
Gerardo Pepe and
Damiano Piovesan and
Jaime Prilusky and
Valeria Putignano and
Leandro G. Radusky and
Pathmanaban Ramasamy and
Atilio O. Rausch and
Nathalie Reuter and
Luis A. Rodriguez and
Nathan J. Rollins and
Antonio Rosato and
Pawel Rubach and
Luis Serrano and
Gulzar Singh and
Petr Skoda and
Carlos Oscar S{\'{a}}nchez Sorzano and
Jan Stourac and
Joanna I. Sulkowska and
Radka Svobodov{\'{a}} Varekov{\'{a}} and
Natalia Tichshenko and
Silvio C. E. Tosatto and
Wim F. Vranken and
Mark N. Wass and
Dandan Xue and
Daniel Zaidman and
Janet M. Thornton and
Michael J. E. Sternberg and
Christine A. Orengo and
Sameer Velankar},
title = {PDBe-KB: collaboratively defining the biological context of structural
data},
journal = {Nucleic Acids Res.},
volume = {50},
number = {{D1}},
pages = {534--542},
year = {2022},
url = {https://doi.org/10.1093/nar/gkab988},
doi = {10.1093/NAR/GKAB988},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/VaradiAABCDNNPT22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/PalopoliICBPGD20,
author = {Nicolas Palopoli and
Javier Iserte and
Luc{\'{\i}}a B. Chemes and
Cristina Marino Buslje and
Gustavo D. Parisi and
Toby J. Gibson and
Norman E. Davey},
title = {The articles.ELM resource: simplifying access to protein linear motif
literature by annotation, text-mining and classification},
journal = {Database J. Biol. Databases Curation},
volume = {2020},
year = {2020},
url = {https://doi.org/10.1093/database/baaa040},
doi = {10.1093/DATABASE/BAAA040},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/PalopoliICBPGD20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/VaradiBDNGAPAAB20,
author = {Mihaly Varadi and
John M. Berrisford and
Mandar S. Deshpande and
Sreenath Nair and
Aleksandras Gutmanas and
David R. Armstrong and
Luk{\'{a}}s Pravda and
Bissan Al{-}Lazikani and
Stephen Anyango and
Geoffrey J. Barton and
Karel Berka and
Tom L. Blundell and
Neera Borkakoti and
Jose M. Dana and
Sayoni Das and
Sucharita Dey and
Patrizio Di Micco and
Franca Fraternali and
Toby J. Gibson and
Manuela Helmer{-}Citterich and
David Hoksza and
Liang{-}Chin Huang and
Rishabh Jain and
Harry Jubb and
Christos C. Kannas and
Natarajan Kannan and
Jaroslav Koca and
Radoslav Kriv{\'{a}}k and
Manjeet Kumar and
Emmanuel D. Levy and
F{\'{a}}bio Madeira and
M. S. Madhusudhan and
Henry J. Martell and
Stuart A. MacGowan and
Jake E. McGreig and
Saqib Mir and
Abhik Mukhopadhyay and
Luca Parca and
Typhaine Paysan{-}Lafosse and
Leandro G. Radusky and
Ant{\'{o}}nio J. M. Ribeiro and
Luis Serrano and
Ian Sillitoe and
Gulzar Singh and
Petr Skoda and
Radka Svobodov{\'{a}} Varekov{\'{a}} and
Jonathan D. Tyzack and
Alfonso Valencia and
Eloy D. Villasclaras{-}Fern{\'{a}}ndez and
Wim F. Vranken and
Mark N. Wass and
Janet M. Thornton and
Michael J. E. Sternberg and
Christine A. Orengo and
Sameer Velankar},
title = {PDBe-KB: a community-driven resource for structural and functional
annotations},
journal = {Nucleic Acids Res.},
volume = {48},
number = {Database-Issue},
pages = {D344--D353},
year = {2020},
url = {https://doi.org/10.1093/nar/gkz853},
doi = {10.1093/NAR/GKZ853},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/VaradiBDNGAPAAB20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GouwMSKZLBCDDDG18,
author = {Marc Gouw and
Sushama Michael and
Hugo S{\'{a}}mano{-}S{\'{a}}nchez and
Manjeet Kumar and
Andr{\'{a}}s Zeke and
Benjamin Lang and
Benoit Bely and
Luc{\'{\i}}a B. Chemes and
Norman E. Davey and
Ziqi Deng and
Francesca Diella and
Clara{-}Marie G{\"{u}}rth and
Ann{-}Kathrin Huber and
Stefan Kleinsorg and
Lara S. Schlegel and
Nicolas Palopoli and
Kim Van Roey and
Brigitte Altenberg and
Attila Rem{\'{e}}nyi and
Holger Dinkel and
Toby J. Gibson},
title = {The eukaryotic linear motif resource - 2018 update},
journal = {Nucleic Acids Res.},
volume = {46},
number = {Database-Issue},
pages = {D428--D434},
year = {2018},
url = {https://doi.org/10.1093/nar/gkx1077},
doi = {10.1093/NAR/GKX1077},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GouwMSKZLBCDDDG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/DinkelRMKUAMSKB16,
author = {Holger Dinkel and
Kim Van Roey and
Sushama Michael and
Manjeet Kumar and
Bora Uyar and
Brigitte Altenberg and
Vladislava Milchevskaya and
Melanie Schneider and
Helen K{\"{u}}hn and
Annika Behrendt and
Sophie Luise Dahl and
Victoria Damerell and
Sandra Diebel and
Sara Kalman and
Steffen Klein and
Arne C. Knudsen and
Christina M{\"{a}}der and
Sabina Merrill and
Angelina Staudt and
Vera Thiel and
Lukas Welti and
Norman E. Davey and
Francesca Diella and
Toby J. Gibson},
title = {{ELM} 2016 - data update and new functionality of the eukaryotic linear
motif resource},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {294--300},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1291},
doi = {10.1093/NAR/GKV1291},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/DinkelRMKUAMSKB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/DinkelRMDWBSKGKSUBASCGSDG14,
author = {Holger Dinkel and
Kim Van Roey and
Sushama Michael and
Norman E. Davey and
Robert J. Weatheritt and
Diana Born and
Tobias Speck and
Daniel Kr{\"{u}}ger and
Gleb Grebnev and
Marta Kuban and
Marta Strumillo and
Bora Uyar and
Aidan Budd and
Brigitte Altenberg and
Markus Seiler and
Luc{\'{\i}}a B. Chemes and
Juliana Glavina and
Ignacio E. S{\'{a}}nchez and
Francesca Diella and
Toby J. Gibson},
title = {The eukaryotic linear motif resource {ELM:} 10 years and counting},
journal = {Nucleic Acids Res.},
volume = {42},
number = {Database-Issue},
pages = {259--266},
year = {2014},
url = {https://doi.org/10.1093/nar/gkt1047},
doi = {10.1093/NAR/GKT1047},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/DinkelRMDWBSKGKSUBASCGSDG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iwbbio/UyarG14,
author = {Bora Uyar and
Toby J. Gibson},
editor = {Ignacio Rojas and
Francisco M. Ortu{\~{n}}o Guzman},
title = {The Roles of Short Linear Motifs in Human Diseases},
booktitle = {International Work-Conference on Bioinformatics and Biomedical Engineering,
{IWBBIO} 2014, Granada, Spain, April 7-9, 2014},
pages = {1063},
publisher = {Copicentro Editorial},
year = {2014},
url = {http://iwbbio.ugr.es/2014/papers/IWBBIO\_2014\_paper\_112.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iwbbio/UyarG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/RoeyOKDRHG13,
author = {Kim Van Roey and
Sandra E. Orchard and
Samuel Kerrien and
Marine Dumousseau and
Sylvie Ricard{-}Blum and
Henning Hermjakob and
Toby J. Gibson},
title = {Capturing cooperative interactions with the {PSI-MI} format},
journal = {Database J. Biol. Databases Curation},
volume = {2013},
year = {2013},
url = {https://doi.org/10.1093/database/bat066},
doi = {10.1093/DATABASE/BAT066},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/RoeyOKDRHG13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WeatherittLPDG12,
author = {Robert J. Weatheritt and
Katja Luck and
Evangelia Petsalaki and
Norman E. Davey and
Toby J. Gibson},
title = {The identification of short linear motif-mediated interfaces within
the human interactome},
journal = {Bioinform.},
volume = {28},
number = {7},
pages = {976--982},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts072},
doi = {10.1093/BIOINFORMATICS/BTS072},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WeatherittLPDG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/DinkelMWDRATUSBJDSHSJMDCLVCHGESMDG12,
author = {Holger Dinkel and
Sushama Michael and
Robert J. Weatheritt and
Norman E. Davey and
Kim Van Roey and
Brigitte Altenberg and
Grischa Toedt and
Bora Uyar and
Markus Seiler and
Aidan Budd and
Lisa J{\"{o}}dicke and
Marcel A. Dammert and
Christian Schroeter and
Maria Hammer and
Tobias Schmidt and
Peter Jehl and
Caroline McGuigan and
Magdalena Dymecka and
Claudia Chica and
Katja Luck and
Allegra Via and
Andrew Chatr{-}aryamontri and
Niall J. Haslam and
Gleb Grebnev and
Richard J. Edwards and
Michel O. Steinmetz and
Heike Meiselbach and
Francesca Diella and
Toby J. Gibson},
title = {{ELM} - the database of eukaryotic linear motifs},
journal = {Nucleic Acids Res.},
volume = {40},
number = {Database-Issue},
pages = {242--251},
year = {2012},
url = {https://doi.org/10.1093/nar/gkr1064},
doi = {10.1093/NAR/GKR1064},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/DinkelMWDRATUSBJDSHSJMDCLVCHGESMDG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WeatherittJDG12,
author = {Robert J. Weatheritt and
Peter Jehl and
Holger Dinkel and
Toby J. Gibson},
title = {iELM - a web server to explore short linear motif-mediated interactions},
journal = {Nucleic Acids Res.},
volume = {40},
number = {Web-Server-Issue},
pages = {364--369},
year = {2012},
url = {https://doi.org/10.1093/nar/gks444},
doi = {10.1093/NAR/GKS444},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WeatherittJDG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/DinkelCVGJGD11,
author = {Holger Dinkel and
Claudia Chica and
Allegra Via and
Cathryn M. Gould and
Lars Juhl Jensen and
Toby J. Gibson and
Francesca Diella},
title = {Phospho.ELM: a database of phosphorylation sites - update 2011},
journal = {Nucleic Acids Res.},
volume = {39},
number = {Database-Issue},
pages = {261--267},
year = {2011},
url = {https://doi.org/10.1093/nar/gkq1104},
doi = {10.1093/NAR/GKQ1104},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/DinkelCVGJGD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GouldDVPGCMSBCSDHWBHPRTAHLG10,
author = {Cathryn M. Gould and
Francesca Diella and
Allegra Via and
P{\aa}l Puntervoll and
Christine Gem{\"{u}}nd and
Sophie Chabanis{-}Davidson and
Sushama Michael and
Ahmed Sayadi and
Jan Christian Bryne and
Claudia Chica and
Markus Seiler and
Norman E. Davey and
Niall J. Haslam and
Robert J. Weatheritt and
Aidan Budd and
Tim Hughes and
Jakub Pas and
Leszek Rychlewski and
Gilles Trav{\'{e}} and
Rein Aasland and
Manuela Helmer{-}Citterich and
Rune Linding and
Toby J. Gibson},
title = {{ELM:} the status of the 2010 eukaryotic linear motif resource},
journal = {Nucleic Acids Res.},
volume = {38},
number = {Database-Issue},
pages = {167--180},
year = {2010},
url = {https://doi.org/10.1093/nar/gkp1016},
doi = {10.1093/NAR/GKP1016},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GouldDVPGCMSBCSDHWBHPRTAHLG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DiellaCLCRNG09,
author = {Francesca Diella and
Sophie Chabanis{-}Davidson and
Katja Luck and
Claudia Chica and
Chenna Ramu and
Claus Nerlov and
Toby J. Gibson},
title = {{KEPE} - a motif frequently superimposed on sumoylation sites in metazoan
chromatin proteins and transcription factors},
journal = {Bioinform.},
volume = {25},
number = {1},
pages = {1--5},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn594},
doi = {10.1093/BIOINFORMATICS/BTN594},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DiellaCLCRNG09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ViaGGGH09,
author = {Allegra Via and
Cathryn M. Gould and
Christine Gem{\"{u}}nd and
Toby J. Gibson and
Manuela Helmer{-}Citterich},
title = {A structure filter for the Eukaryotic Linear Motif Resource},
journal = {{BMC} Bioinform.},
volume = {10},
pages = {351},
year = {2009},
url = {https://doi.org/10.1186/1471-2105-10-351},
doi = {10.1186/1471-2105-10-351},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ViaGGGH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dils/HaslamG09,
author = {Niall J. Haslam and
Toby J. Gibson},
editor = {Norman W. Paton and
Paolo Missier and
Cornelia Hedeler},
title = {EpiC: {A} Resource for Integrating Information and Analyses to Enable
Selection of Epitopes for Antibody Based Experiments},
booktitle = {Data Integration in the Life Sciences, 6th International Workshop,
{DILS} 2009, Manchester, UK, July 20-22, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5647},
pages = {173--181},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02879-3\_14},
doi = {10.1007/978-3-642-02879-3\_14},
timestamp = {Tue, 14 May 2019 10:00:43 +0200},
biburl = {https://dblp.org/rec/conf/dils/HaslamG09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MichaelTRCG08,
author = {Sushama Michael and
Gilles Trav{\'{e}} and
Chenna Ramu and
Claudia Chica and
Toby J. Gibson},
title = {Discovery of candidate KEN-box motifs using Cell Cycle keyword enrichment
combined with native disorder prediction and motif conservation},
journal = {Bioinform.},
volume = {24},
number = {4},
pages = {453--457},
year = {2008},
url = {https://doi.org/10.1093/bioinformatics/btm624},
doi = {10.1093/BIOINFORMATICS/BTM624},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MichaelTRCG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChicaLGLG08,
author = {Claudia Chica and
Alberto Labarga and
Cathryn M. Gould and
Rodrigo Lopez and
Toby J. Gibson},
title = {A tree-based conservation scoring method for short linear motifs in
multiple alignments of protein sequences},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-229},
doi = {10.1186/1471-2105-9-229},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChicaLGLG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PerrodouCPGT08,
author = {Emmanuel Perrodou and
Claudia Chica and
Olivier Poch and
Toby J. Gibson and
Julie Dawn Thompson},
title = {A new protein linear motif benchmark for multiple sequence alignment
software},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-213},
doi = {10.1186/1471-2105-9-213},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PerrodouCPGT08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/DiellaGCVG08,
author = {Francesca Diella and
Cathryn M. Gould and
Claudia Chica and
Allegra Via and
Toby J. Gibson},
title = {Phospho.ELM: a database of phosphorylation sites - update 2008},
journal = {Nucleic Acids Res.},
volume = {36},
number = {Database-Issue},
pages = {240--244},
year = {2008},
url = {https://doi.org/10.1093/nar/gkm772},
doi = {10.1093/NAR/GKM772},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/DiellaGCVG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LarkinBBCMMVWWLTGH07,
author = {Mark A. Larkin and
Gordon Blackshields and
Nigel P. Brown and
R. Chenna and
Paul A. McGettigan and
Hamish McWilliam and
Franck Valentin and
Iain M. Wallace and
Andreas Wilm and
Rodrigo Lopez and
Julie Dawn Thompson and
Toby J. Gibson and
Desmond G. Higgins},
title = {Clustal {W} and Clustal {X} version 2.0},
journal = {Bioinform.},
volume = {23},
number = {21},
pages = {2947--2948},
year = {2007},
url = {https://doi.org/10.1093/bioinformatics/btm404},
doi = {10.1093/BIOINFORMATICS/BTM404},
timestamp = {Wed, 01 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LarkinBBCMMVWWLTGH07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DiellaCGLVKSBG04,
author = {Francesca Diella and
Scott Cameron and
Christine Gem{\"{u}}nd and
Rune Linding and
Allegra Via and
Bernhard K{\"{u}}ster and
Thomas Sicheritz{-}Pont{\'{e}}n and
Nikolaj Blom and
Toby J. Gibson},
title = {Phospho.ELM: {A} database of experimentally verified phosphorylation
sites in eukaryotic proteins},
journal = {{BMC} Bioinform.},
volume = {5},
pages = {79},
year = {2004},
url = {https://doi.org/10.1186/1471-2105-5-79},
doi = {10.1186/1471-2105-5-79},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DiellaCGLVKSBG04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ChennaSKLGHT03,
author = {Chenna Ramu and
Hideaki Sugawara and
Tadashi Koike and
Rodrigo Lopez and
Toby J. Gibson and
Desmond G. Higgins and
Julie Dawn Thompson},
title = {Multiple sequence alignment with the Clustal series of programs},
journal = {Nucleic Acids Res.},
volume = {31},
number = {13},
pages = {3497--3500},
year = {2003},
url = {https://doi.org/10.1093/nar/gkg500},
doi = {10.1093/NAR/GKG500},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ChennaSKLGHT03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PuntervollLGCMCMABCFMVCDSWRMGLBRKHHAG03,
author = {P{\aa}l Puntervoll and
Rune Linding and
Christine Gem{\"{u}}nd and
Sophie Chabanis{-}Davidson and
Morten Mattingsdal and
Scott Cameron and
David M. A. Martin and
Gabriele Ausiello and
Barbara Brannetti and
Anna Costantini and
Fabrizio Ferr{\`{e}} and
Vincenza Maselli and
Allegra Via and
Gianni Cesareni and
Francesca Diella and
Giulio Superti{-}Furga and
Lucjan Stanislaw Wyrwicz and
Chenna Ramu and
Caroline McGuigan and
Rambabu Gudavalli and
Ivica Letunic and
Peer Bork and
Leszek Rychlewski and
Bernhard K{\"{u}}ster and
Manuela Helmer{-}Citterich and
William N. Hunter and
Rein Aasland and
Toby J. Gibson},
title = {{ELM} server: a new resource for investigating short functional sites
in modular eukaryotic proteins},
journal = {Nucleic Acids Res.},
volume = {31},
number = {13},
pages = {3625--3630},
year = {2003},
url = {https://doi.org/10.1093/nar/gkg545},
doi = {10.1093/NAR/GKG545},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/PuntervollLGCMCMABCFMVCDSWRMGLBRKHHAG03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LindingRNG03,
author = {Rune Linding and
Robert B. Russell and
Victor Neduva and
Toby J. Gibson},
title = {GlobPlot: exploring protein sequences for globularity and disorder},
journal = {Nucleic Acids Res.},
volume = {31},
number = {13},
pages = {3701--3708},
year = {2003},
url = {https://doi.org/10.1093/nar/gkg519},
doi = {10.1093/NAR/GKG519},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LindingRNG03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BimpikisBLG03,
author = {Konstantinos Bimpikis and
Aidan Budd and
Rune Linding and
Toby J. Gibson},
title = {BLAST2SRS, a web server for flexible retrieval of related protein
sequences in the {SWISS-PROT} and SPTrEMBL databases},
journal = {Nucleic Acids Res.},
volume = {31},
number = {13},
pages = {3792--3794},
year = {2003},
url = {https://doi.org/10.1093/nar/gkg535},
doi = {10.1093/NAR/GKG535},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BimpikisBLG03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RamuGG00,
author = {Chenna Ramu and
Christine Gem{\"{u}}nd and
Toby J. Gibson},
title = {Object-oriented parsing of biological databases with Python},
journal = {Bioinform.},
volume = {16},
number = {7},
pages = {628--638},
year = {2000},
url = {https://doi.org/10.1093/bioinformatics/16.7.628},
doi = {10.1093/BIOINFORMATICS/16.7.628},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RamuGG00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ThompsonHG94,
author = {Julie Dawn Thompson and
Desmond G. Higgins and
Toby J. Gibson},
title = {Improved sensitivity of profile searches through the use of sequence
weights and gap excision},
journal = {Comput. Appl. Biosci.},
volume = {10},
number = {1},
pages = {19--29},
year = {1994},
url = {https://doi.org/10.1093/bioinformatics/10.1.19},
doi = {10.1093/BIOINFORMATICS/10.1.19},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ThompsonHG94.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GibsonT94,
author = {Toby J. Gibson and
Julie Dawn Thompson},
title = {Detection of dsRNA-binding domains in {RNA} helicase {A} and Drosophila
maleless: implications for monomeric {RNA} helicases},
journal = {Nucleic Acids Res.},
volume = {22},
number = {13},
pages = {2552--2556},
year = {1994},
url = {https://doi.org/10.1093/nar/22.13.2552},
doi = {10.1093/NAR/22.13.2552},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GibsonT94.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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