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ORCIDBibTeX records: David K. Gifford
@inproceedings{DBLP:conf/aaai/DaiG23,
author = {Zheng Dai and
David K. Gifford},
editor = {Brian Williams and
Yiling Chen and
Jennifer Neville},
title = {Constrained Submodular Optimization for Vaccine Design},
booktitle = {Thirty-Seventh {AAAI} Conference on Artificial Intelligence, {AAAI}
2023, Thirty-Fifth Conference on Innovative Applications of Artificial
Intelligence, {IAAI} 2023, Thirteenth Symposium on Educational Advances
in Artificial Intelligence, {EAAI} 2023, Washington, DC, USA, February
7-14, 2023},
pages = {5045--5053},
publisher = {{AAAI} Press},
year = {2023},
url = {https://doi.org/10.1609/aaai.v37i4.25632},
doi = {10.1609/AAAI.V37I4.25632},
timestamp = {Mon, 04 Sep 2023 12:29:24 +0200},
biburl = {https://dblp.org/rec/conf/aaai/DaiG23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iclr/Dai023,
author = {Zheng Dai and
David Gifford},
title = {Fundamental limits on the robustness of image classifiers},
booktitle = {The Eleventh International Conference on Learning Representations,
{ICLR} 2023, Kigali, Rwanda, May 1-5, 2023},
publisher = {OpenReview.net},
year = {2023},
url = {https://openreview.net/pdf?id=gpmL0D4VjN4},
timestamp = {Fri, 30 Jun 2023 14:38:38 +0200},
biburl = {https://dblp.org/rec/conf/iclr/Dai023.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2306-02174,
author = {Zheng Dai and
David K. Gifford},
title = {Training Data Attribution for Diffusion Models},
journal = {CoRR},
volume = {abs/2306.02174},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2306.02174},
doi = {10.48550/ARXIV.2306.02174},
eprinttype = {arXiv},
eprint = {2306.02174},
timestamp = {Wed, 14 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2306-02174.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iclr/LiuD0G22,
author = {Ge Liu and
Alexander Dimitrakakis and
Brandon Carter and
David K. Gifford},
title = {Maximum n-times Coverage for Vaccine Design},
booktitle = {The Tenth International Conference on Learning Representations, {ICLR}
2022, Virtual Event, April 25-29, 2022},
publisher = {OpenReview.net},
year = {2022},
url = {https://openreview.net/forum?id=ULfq0qR25dY},
timestamp = {Sat, 20 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/iclr/LiuD0G22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/DaiSHBEG22,
author = {Zheng Dai and
Sachit D. Saksena and
Geraldine Horny and
Christine Banholzer and
Stefan Ewert and
David K. Gifford},
editor = {Itsik Pe'er},
title = {Ultra High Diversity Factorizable Libraries for Efficient Therapeutic
Discovery},
booktitle = {Research in Computational Molecular Biology - 26th Annual International
Conference, {RECOMB} 2022, San Diego, CA, USA, May 22-25, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13278},
pages = {390--392},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-04749-7\_40},
doi = {10.1007/978-3-031-04749-7\_40},
timestamp = {Thu, 02 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/DaiSHBEG22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2206-08336,
author = {Zheng Dai and
David K. Gifford},
title = {Constrained Submodular Optimization for Vaccine Design},
journal = {CoRR},
volume = {abs/2206.08336},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2206.08336},
doi = {10.48550/ARXIV.2206.08336},
eprinttype = {arXiv},
eprint = {2206.08336},
timestamp = {Mon, 20 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2206-08336.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DaiHZCJBG21,
author = {Zheng Dai and
Brooke D. Huisman and
Haoyang Zeng and
Brandon Carter and
Siddhartha Jain and
Michael E. Birnbaum and
David K. Gifford},
title = {Machine learning optimization of peptides for presentation by class
{II} MHCs},
journal = {Bioinform.},
volume = {37},
number = {19},
pages = {3160--3167},
year = {2021},
url = {https://doi.org/10.1093/bioinformatics/btab131},
doi = {10.1093/BIOINFORMATICS/BTAB131},
timestamp = {Tue, 12 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DaiHZCJBG21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/LouieSTZWCSG21,
author = {Wilson Louie and
Max W. Shen and
Zakir Tahiry and
Sophia Zhang and
Daniel Worstell and
Christopher A. Cassa and
Richard I. Sherwood and
David K. Gifford},
title = {Machine learning based {CRISPR} gRNA design for therapeutic exon skipping},
journal = {PLoS Comput. Biol.},
volume = {17},
number = {1},
year = {2021},
url = {https://doi.org/10.1371/journal.pcbi.1008605},
doi = {10.1371/JOURNAL.PCBI.1008605},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/LouieSTZWCSG21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/YeoJCBCSSLSG21,
author = {Grace Hui Ting Yeo and
Oscar Juez and
Qing Chen and
Budhaditya Banerjee and
Lendy Chu and
Max W. Shen and
May Sabry and
Ive Logister and
Richard I. Sherwood and
David K. Gifford},
title = {Detection of gene cis-regulatory element perturbations in single-cell
transcriptomes},
journal = {PLoS Comput. Biol.},
volume = {17},
number = {3},
year = {2021},
url = {https://doi.org/10.1371/journal.pcbi.1008789},
doi = {10.1371/JOURNAL.PCBI.1008789},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/YeoJCBCSSLSG21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/HammelmanG21,
author = {Jennifer Hammelman and
David K. Gifford},
title = {Discovering differential genome sequence activity with interpretable
and efficient deep learning},
journal = {PLoS Comput. Biol.},
volume = {17},
number = {8},
year = {2021},
url = {https://doi.org/10.1371/journal.pcbi.1009282},
doi = {10.1371/JOURNAL.PCBI.1009282},
timestamp = {Tue, 16 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/HammelmanG21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mlsys/LiebenweinB00R21,
author = {Lucas Liebenwein and
Cenk Baykal and
Brandon Carter and
David Gifford and
Daniela Rus},
editor = {Alex Smola and
Alex Dimakis and
Ion Stoica},
title = {Lost in Pruning: The Effects of Pruning Neural Networks beyond Test
Accuracy},
booktitle = {Proceedings of Machine Learning and Systems 2021, MLSys 2021, virtual,
April 5-9, 2021},
publisher = {mlsys.org},
year = {2021},
url = {https://proceedings.mlsys.org/paper/2021/hash/2a79ea27c279e471f4d180b08d62b00a-Abstract.html},
timestamp = {Mon, 23 May 2022 11:55:02 +0200},
biburl = {https://dblp.org/rec/conf/mlsys/LiebenweinB00R21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/CarterJMG21,
author = {Brandon Carter and
Siddhartha Jain and
Jonas Mueller and
David Gifford},
editor = {Marc'Aurelio Ranzato and
Alina Beygelzimer and
Yann N. Dauphin and
Percy Liang and
Jennifer Wortman Vaughan},
title = {Overinterpretation reveals image classification model pathologies},
booktitle = {Advances in Neural Information Processing Systems 34: Annual Conference
on Neural Information Processing Systems 2021, NeurIPS 2021, December
6-14, 2021, virtual},
pages = {15395--15407},
year = {2021},
url = {https://proceedings.neurips.cc/paper/2021/hash/8217bb4e7fa0541e0f5e04fea764ab91-Abstract.html},
timestamp = {Wed, 19 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/nips/CarterJMG21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2101-10902,
author = {Ge Liu and
Brandon Carter and
David K. Gifford},
title = {Maximum n-times Coverage for {COVID-19} Vaccine Design},
journal = {CoRR},
volume = {abs/2101.10902},
year = {2021},
url = {https://arxiv.org/abs/2101.10902},
eprinttype = {arXiv},
eprint = {2101.10902},
timestamp = {Sun, 31 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2101-10902.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2103-03014,
author = {Lucas Liebenwein and
Cenk Baykal and
Brandon Carter and
David Gifford and
Daniela Rus},
title = {Lost in Pruning: The Effects of Pruning Neural Networks beyond Test
Accuracy},
journal = {CoRR},
volume = {abs/2103.03014},
year = {2021},
url = {https://arxiv.org/abs/2103.03014},
eprinttype = {arXiv},
eprint = {2103.03014},
timestamp = {Mon, 15 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2103-03014.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2112-04033,
author = {Zheng Dai and
David K. Gifford},
title = {Image classifiers can not be made robust to small perturbations},
journal = {CoRR},
volume = {abs/2112.04033},
year = {2021},
url = {https://arxiv.org/abs/2112.04033},
eprinttype = {arXiv},
eprint = {2112.04033},
timestamp = {Mon, 13 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2112-04033.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuZM0WSHBEG20,
author = {Ge Liu and
Haoyang Zeng and
Jonas Mueller and
Brandon Carter and
Ziheng Wang and
Jonas Schilz and
Geraldine Horny and
Michael E. Birnbaum and
Stefan Ewert and
David K. Gifford},
title = {Antibody complementarity determining region design using high-capacity
machine learning},
journal = {Bioinform.},
volume = {36},
number = {7},
pages = {2126--2133},
year = {2020},
url = {https://doi.org/10.1093/bioinformatics/btz895},
doi = {10.1093/BIOINFORMATICS/BTZ895},
timestamp = {Wed, 19 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuZM0WSHBEG20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aaai/JainLM020,
author = {Siddhartha Jain and
Ge Liu and
Jonas Mueller and
David Gifford},
title = {Maximizing Overall Diversity for Improved Uncertainty Estimates in
Deep Ensembles},
booktitle = {The Thirty-Fourth {AAAI} Conference on Artificial Intelligence, {AAAI}
2020, The Thirty-Second Innovative Applications of Artificial Intelligence
Conference, {IAAI} 2020, The Tenth {AAAI} Symposium on Educational
Advances in Artificial Intelligence, {EAAI} 2020, New York, NY, USA,
February 7-12, 2020},
pages = {4264--4271},
publisher = {{AAAI} Press},
year = {2020},
url = {https://doi.org/10.1609/aaai.v34i04.5849},
doi = {10.1609/AAAI.V34I04.5849},
timestamp = {Mon, 04 Sep 2023 12:29:24 +0200},
biburl = {https://dblp.org/rec/conf/aaai/JainLM020.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2002-07916,
author = {Siddhartha Jain and
Ge Liu and
David K. Gifford},
title = {Information Condensing Active Learning},
journal = {CoRR},
volume = {abs/2002.07916},
year = {2020},
url = {https://arxiv.org/abs/2002.07916},
eprinttype = {arXiv},
eprint = {2002.07916},
timestamp = {Thu, 18 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2002-07916.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2003-08907,
author = {Brandon Carter and
Siddhartha Jain and
Jonas Mueller and
David K. Gifford},
title = {Overinterpretation reveals image classification model pathologies},
journal = {CoRR},
volume = {abs/2003.08907},
year = {2020},
url = {https://arxiv.org/abs/2003.08907},
eprinttype = {arXiv},
eprint = {2003.08907},
timestamp = {Wed, 19 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2003-08907.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZengG19a,
author = {Haoyang Zeng and
David K. Gifford},
title = {DeepLigand: accurate prediction of {MHC} class {I} ligands using peptide
embedding},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i278--i283},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz330},
doi = {10.1093/BIOINFORMATICS/BTZ330},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZengG19a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiuZG19,
author = {Ge Liu and
Haoyang Zeng and
David K. Gifford},
title = {Visualizing complex feature interactions and feature sharing in genomic
deep neural networks},
journal = {{BMC} Bioinform.},
volume = {20},
number = {1},
pages = {401:1--401:14},
year = {2019},
url = {https://doi.org/10.1186/s12859-019-2957-4},
doi = {10.1186/S12859-019-2957-4},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LiuZG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aistats/CarterMJG19,
author = {Brandon Carter and
Jonas Mueller and
Siddhartha Jain and
David K. Gifford},
editor = {Kamalika Chaudhuri and
Masashi Sugiyama},
title = {What made you do this? Understanding black-box decisions with sufficient
input subsets},
booktitle = {The 22nd International Conference on Artificial Intelligence and Statistics,
{AISTATS} 2019, 16-18 April 2019, Naha, Okinawa, Japan},
series = {Proceedings of Machine Learning Research},
volume = {89},
pages = {567--576},
publisher = {{PMLR}},
year = {2019},
url = {http://proceedings.mlr.press/v89/carter19a.html},
timestamp = {Wed, 19 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/aistats/CarterMJG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WangYSG19,
author = {Ziheng Wang and
Grace H. T. Yeo and
Richard Sherwood and
David Gifford},
editor = {Lenore J. Cowen},
title = {Disentangled Representations of Cellular Identity},
booktitle = {Research in Computational Molecular Biology - 23rd Annual International
Conference, {RECOMB} 2019, Washington, DC, USA, May 5-8, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11467},
pages = {256--271},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-17083-7\_16},
doi = {10.1007/978-3-030-17083-7\_16},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/WangYSG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1906-07380,
author = {Siddhartha Jain and
Ge Liu and
Jonas Mueller and
David K. Gifford},
title = {Maximizing Overall Diversity for Improved Uncertainty Estimates in
Deep Ensembles},
journal = {CoRR},
volume = {abs/1906.07380},
year = {2019},
url = {http://arxiv.org/abs/1906.07380},
eprinttype = {arXiv},
eprint = {1906.07380},
timestamp = {Wed, 19 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1906-07380.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nature/ShenAHWCKCLGS18,
author = {Max W. Shen and
Mandana Arbab and
Jonathan Y. Hsu and
Daniel Worstell and
Sannie J. Culbertson and
Olga Krabbe and
Christopher A. Cassa and
David R. Liu and
David K. Gifford and
Richard I. Sherwood},
title = {Predictable and precise template-free {CRISPR} editing of pathogenic
variants},
journal = {Nat.},
volume = {563},
number = {7733},
pages = {646--651},
year = {2018},
url = {https://doi.org/10.1038/s41586-018-0686-x},
doi = {10.1038/S41586-018-0686-X},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nature/ShenAHWCKCLGS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1810-03805,
author = {Brandon Carter and
Jonas Mueller and
Siddhartha Jain and
David K. Gifford},
title = {What made you do this? Understanding black-box decisions with sufficient
input subsets},
journal = {CoRR},
volume = {abs/1810.03805},
year = {2018},
url = {http://arxiv.org/abs/1810.03805},
eprinttype = {arXiv},
eprint = {1810.03805},
timestamp = {Wed, 19 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1810-03805.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icml/MuellerGJ17,
author = {Jonas Mueller and
David K. Gifford and
Tommi S. Jaakkola},
editor = {Doina Precup and
Yee Whye Teh},
title = {Sequence to Better Sequence: Continuous Revision of Combinatorial
Structures},
booktitle = {Proceedings of the 34th International Conference on Machine Learning,
{ICML} 2017, Sydney, NSW, Australia, 6-11 August 2017},
series = {Proceedings of Machine Learning Research},
volume = {70},
pages = {2536--2544},
publisher = {{PMLR}},
year = {2017},
url = {http://proceedings.mlr.press/v70/mueller17a.html},
timestamp = {Wed, 19 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icml/MuellerGJ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/GuoTZG17,
author = {Yuchun Guo and
Kevin Tian and
Haoyang Zeng and
David K. Gifford},
editor = {S{\"{u}}leyman Cenk Sahinalp},
title = {K-mer Set Memory {(KSM)} Motif Representation Enables Accurate Prediction
of the Impact of Regulatory Variants},
booktitle = {Research in Computational Molecular Biology - 21st Annual International
Conference, {RECOMB} 2017, Hong Kong, China, May 3-7, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10229},
pages = {372--374},
year = {2017},
url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-56970-3\%2F1.pdf},
timestamp = {Sat, 30 May 2020 20:04:52 +0200},
biburl = {https://dblp.org/rec/conf/recomb/GuoTZG17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZengHKG16,
author = {Haoyang Zeng and
Tatsunori B. Hashimoto and
Daniel D. Kang and
David K. Gifford},
title = {{GERV:} a statistical method for generative evaluation of regulatory
variants for transcription factor binding},
journal = {Bioinform.},
volume = {32},
number = {4},
pages = {490--496},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv565},
doi = {10.1093/BIOINFORMATICS/BTV565},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZengHKG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZengELG16,
author = {Haoyang Zeng and
Matthew D. Edwards and
Ge Liu and
David K. Gifford},
title = {Convolutional neural network architectures for predicting DNA-protein
binding},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {121--127},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw255},
doi = {10.1093/BIOINFORMATICS/BTW255},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZengELG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icml/HashimotoGJ16,
author = {Tatsunori B. Hashimoto and
David K. Gifford and
Tommi S. Jaakkola},
editor = {Maria{-}Florina Balcan and
Kilian Q. Weinberger},
title = {Learning Population-Level Diffusions with Generative RNNs},
booktitle = {Proceedings of the 33nd International Conference on Machine Learning,
{ICML} 2016, New York City, NY, USA, June 19-24, 2016},
series = {{JMLR} Workshop and Conference Proceedings},
volume = {48},
pages = {2417--2426},
publisher = {JMLR.org},
year = {2016},
url = {http://proceedings.mlr.press/v48/hashimoto16.html},
timestamp = {Wed, 29 May 2019 08:41:46 +0200},
biburl = {https://dblp.org/rec/conf/icml/HashimotoGJ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/HashimotoEG14,
author = {Tatsunori B. Hashimoto and
Matthew D. Edwards and
David K. Gifford},
title = {Universal Count Correction for High-Throughput Sequencing},
journal = {PLoS Comput. Biol.},
volume = {10},
number = {3},
year = {2014},
url = {https://doi.org/10.1371/journal.pcbi.1003494},
doi = {10.1371/JOURNAL.PCBI.1003494},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/HashimotoEG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/MahonyEMSKMWG14,
author = {Shaun Mahony and
Matthew D. Edwards and
Esteban O. Mazzoni and
Richard I. Sherwood and
Akshay Kakumanu and
Carolyn A. Morrison and
Hynek Wichterle and
David K. Gifford},
title = {An Integrated Model of Multiple-Condition ChIP-Seq Data Reveals Predeterminants
of Cdx2 Binding},
journal = {PLoS Comput. Biol.},
volume = {10},
number = {3},
year = {2014},
url = {https://doi.org/10.1371/journal.pcbi.1003501},
doi = {10.1371/JOURNAL.PCBI.1003501},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/MahonyEMSKMWG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MahonyEMSKMWG14,
author = {Shaun Mahony and
Matthew D. Edwards and
Esteban O. Mazzoni and
Richard Sherwood and
Akshay Kakumanu and
Carolyn A. Morrison and
Hynek Wichterle and
David K. Gifford},
editor = {Roded Sharan},
title = {An Integrated Model of Multiple-Condition ChIP-Seq Data Reveals Predeterminants
of Cdx2 Binding},
booktitle = {Research in Computational Molecular Biology - 18th Annual International
Conference, {RECOMB} 2014, Pittsburgh, PA, USA, April 2-5, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8394},
pages = {175--176},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-05269-4\_14},
doi = {10.1007/978-3-319-05269-4\_14},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/MahonyEMSKMWG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ReederG13,
author = {Christopher Reeder and
David Gifford},
editor = {Minghua Deng and
Rui Jiang and
Fengzhu Sun and
Xuegong Zhang},
title = {High Resolution Modeling of Chromatin Interactions},
booktitle = {Research in Computational Molecular Biology - 17th Annual International
Conference, {RECOMB} 2013, Beijing, China, April 7-10, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7821},
pages = {186--198},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-37195-0\_16},
doi = {10.1007/978-3-642-37195-0\_16},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ReederG13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HashimotoJSMWG12,
author = {Tatsunori B. Hashimoto and
Tommi S. Jaakkola and
Richard Sherwood and
Esteban O. Mazzoni and
Hynek Wichterle and
David K. Gifford},
title = {Lineage-based identification of cellular states and expression programs},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {250--257},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts204},
doi = {10.1093/BIOINFORMATICS/BTS204},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HashimotoJSMWG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/EdwardsG12,
author = {Matthew D. Edwards and
David K. Gifford},
title = {High-resolution genetic mapping with pooled sequencing},
journal = {{BMC} Bioinform.},
volume = {13},
number = {{S-6}},
pages = {S8},
year = {2012},
url = {https://doi.org/10.1186/1471-2105-13-S6-S8},
doi = {10.1186/1471-2105-13-S6-S8},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/EdwardsG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/GuoMG12,
author = {Yuchun Guo and
Shaun Mahony and
David K. Gifford},
title = {High Resolution Genome Wide Binding Event Finding and Motif Discovery
Reveals Transcription Factor Spatial Binding Constraints},
journal = {PLoS Comput. Biol.},
volume = {8},
number = {8},
year = {2012},
url = {https://doi.org/10.1371/journal.pcbi.1002638},
doi = {10.1371/JOURNAL.PCBI.1002638},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/GuoMG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RolfeG11,
author = {P. Alexander Rolfe and
David K. Gifford},
title = {ReadDB Provides Efficient Storage for Mapped Short Reads},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {278},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-278},
doi = {10.1186/1471-2105-12-278},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RolfeG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijrr/LimBGMR11,
author = {Sejoon Lim and
Hari Balakrishnan and
David Gifford and
Samuel Madden and
Daniela Rus},
title = {Stochastic motion planning and applications to traffic},
journal = {Int. J. Robotics Res.},
volume = {30},
number = {6},
pages = {699--712},
year = {2011},
url = {https://doi.org/10.1177/0278364910386259},
doi = {10.1177/0278364910386259},
timestamp = {Tue, 08 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijrr/LimBGMR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/DanfordDAGFG11,
author = {Timothy Danford and
Robin D. Dowell and
Sudeep Agarwala and
Paula Grisafi and
Gerald Fink and
David K. Gifford},
title = {Discovering Regulatory Overlapping {RNA} Transcripts},
journal = {J. Comput. Biol.},
volume = {18},
number = {3},
pages = {295--303},
year = {2011},
url = {https://doi.org/10.1089/cmb.2010.0267},
doi = {10.1089/CMB.2010.0267},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/DanfordDAGFG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GuoPAGJGM10,
author = {Yuchun Guo and
Georgios Papachristoudis and
Robert C. Altshuler and
Georg K. Gerber and
Tommi S. Jaakkola and
David K. Gifford and
Shaun Mahony},
title = {Discovering homotypic binding events at high spatial resolution},
journal = {Bioinform.},
volume = {26},
number = {24},
pages = {3028--3034},
year = {2010},
url = {https://doi.org/10.1093/bioinformatics/btq590},
doi = {10.1093/BIOINFORMATICS/BTQ590},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GuoPAGJGM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/DanfordDAGFG10,
author = {Timothy Danford and
Robin D. Dowell and
Sudeep Agarwala and
Paula Grisafi and
Gerald Fink and
David K. Gifford},
editor = {Bonnie Berger},
title = {Discovering Regulatory Overlapping {RNA} Transcripts},
booktitle = {Research in Computational Molecular Biology, 14th Annual International
Conference, {RECOMB} 2010, Lisbon, Portugal, April 25-28, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6044},
pages = {110--122},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-12683-3\_8},
doi = {10.1007/978-3-642-12683-3\_8},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/DanfordDAGFG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/DanfordRG08,
author = {Timothy Danford and
P. Alexander Rolfe and
David K. Gifford},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany Murray and
Teri E. Klein},
title = {{GSE:} {A} Comprehensive Database System for the Representation, Retrieval,
and Analysis of Microarray Data},
booktitle = {Biocomputing 2008, Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, 4-8 January 2008},
pages = {539--550},
publisher = {World Scientific},
year = {2008},
url = {http://psb.stanford.edu/psb-online/proceedings/psb08/danford.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/DanfordRG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wafr/LimBGMR08,
author = {Sejoon Lim and
Hari Balakrishnan and
David Gifford and
Samuel Madden and
Daniela Rus},
editor = {Howie Choset and
Marco Morales and
Todd D. Murphey},
title = {Stochastic Motion Planning and Applications to Traffic},
booktitle = {Algorithmic Foundation of Robotics VIII, Selected Contributions of
the Eight International Workshop on the Algorithmic Foundations of
Robotics, {WAFR} 2008, Guanajuato, Mexico, December 7-9, 2008},
series = {Springer Tracts in Advanced Robotics},
volume = {57},
pages = {483--500},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-642-00312-7\_30},
doi = {10.1007/978-3-642-00312-7\_30},
timestamp = {Tue, 08 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wafr/LimBGMR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/GerberDJG07,
author = {Georg K. Gerber and
Robin D. Dowell and
Tommi S. Jaakkola and
David K. Gifford},
title = {Automated Discovery of Functional Generality of Human Gene Expression
Programs},
journal = {PLoS Comput. Biol.},
volume = {3},
number = {8},
year = {2007},
url = {https://doi.org/10.1371/journal.pcbi.0030148},
doi = {10.1371/JOURNAL.PCBI.0030148},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/GerberDJG07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MacIsaacGNOSGYF06,
author = {Kenzie D. MacIsaac and
D. Benjamin Gordon and
Lena Nekludova and
Duncan T. Odom and
Joerg Schreiber and
David K. Gifford and
Richard A. Young and
Ernest Fraenkel},
title = {A hypothesis-based approach for identifying the binding specificity
of regulatory proteins from chromatin immunoprecipitation data},
journal = {Bioinform.},
volume = {22},
number = {4},
pages = {423--429},
year = {2006},
url = {https://doi.org/10.1093/bioinformatics/bti815},
doi = {10.1093/BIOINFORMATICS/BTI815},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MacIsaacGNOSGYF06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MacIsaacWGGSF06,
author = {Kenzie D. MacIsaac and
Ting Wang and
D. Benjamin Gordon and
David K. Gifford and
Gary D. Stormo and
Ernest Fraenkel},
title = {An improved map of conserved regulatory sites for \emph{Saccharomyces
cerevisiae}},
journal = {{BMC} Bioinform.},
volume = {7},
pages = {113},
year = {2006},
url = {https://doi.org/10.1186/1471-2105-7-113},
doi = {10.1186/1471-2105-7-113},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MacIsaacWGGSF06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/QiMKHJGG06,
author = {Yuan (Alan) Qi and
Patrycja E. Missiuro and
Ashish Kapoor and
Craig P. Hunter and
Tommi S. Jaakkola and
David K. Gifford and
Hui Ge},
title = {Semi-supervised analysis of gene expression profiles for lineage-specific
development in the \emph{Caenorhabditis elegans} embryo},
booktitle = {Proceedings 14th International Conference on Intelligent Systems for
Molecular Biology 2006, Fortaleza, Brazil, August 6-10, 2006},
pages = {417--423},
year = {2006},
url = {https://doi.org/10.1093/bioinformatics/btl256},
doi = {10.1093/BIOINFORMATICS/BTL256},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/QiMKHJGG06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icml/SinghPGBB05,
author = {Rohit Singh and
Nathan P. Palmer and
David K. Gifford and
Bonnie Berger and
Ziv Bar{-}Joseph},
editor = {Luc De Raedt and
Stefan Wrobel},
title = {Active learning for sampling in time-series experiments with application
to gene expression analysis},
booktitle = {Machine Learning, Proceedings of the Twenty-Second International Conference
{(ICML} 2005), Bonn, Germany, August 7-11, 2005},
series = {{ACM} International Conference Proceeding Series},
volume = {119},
pages = {832--839},
publisher = {{ACM}},
year = {2005},
url = {https://doi.org/10.1145/1102351.1102456},
doi = {10.1145/1102351.1102456},
timestamp = {Sat, 13 Jul 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icml/SinghPGBB05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/csb/SachsPPNGJL04,
author = {Karen Sachs and
Omar D. Perez and
Dana Pe'er and
Garry P. Nolan and
David K. Gifford and
Tommi S. Jaakkola and
Douglas A. Lauffenburger},
title = {Analysis of Signaling Pathways in Human T-Cells Using Bayesian Network
Modeling of Single Cell Data},
booktitle = {3rd International {IEEE} Computer Society Computational Systems Bioinformatics
Conference, {CSB} 2004, Stanford, CA, USA, August 16-19, 2004},
pages = {644},
publisher = {{IEEE} Computer Society},
year = {2004},
url = {https://doi.org/10.1109/CSB.2004.1332529},
doi = {10.1109/CSB.2004.1332529},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/csb/SachsPPNGJL04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/Bar-JosephFGSR04,
author = {Ziv Bar{-}Joseph and
Shlomit Farkash and
David K. Gifford and
Itamar Simon and
Roni Rosenfeld},
title = {Deconvolving cell cycle expression data with complementary information},
booktitle = {Proceedings Twelfth International Conference on Intelligent Systems
for Molecular Biology/Third European Conference on Computational Biology
2004, Glasgow, UK, July 31-August 4, 2004},
pages = {23--30},
year = {2004},
url = {https://doi.org/10.1093/bioinformatics/bth924},
doi = {10.1093/BIOINFORMATICS/BTH924},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ismb/Bar-JosephFGSR04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/TakusagawaG04,
author = {Ken T. Takusagawa and
David K. Gifford},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany A. Jung and
Teri E. Klein},
title = {Negative Information for Motif Discovery},
booktitle = {Biocomputing 2004, Proceedings of the Pacific Symposium, Hawaii, USA,
6-10 January 2004},
pages = {360--371},
publisher = {World Scientific},
year = {2004},
url = {http://psb.stanford.edu/psb-online/proceedings/psb04/takusagawa.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/TakusagawaG04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Bar-JosephDGSHJ03,
author = {Ziv Bar{-}Joseph and
Erik D. Demaine and
David K. Gifford and
Nathan Srebro and
Ang{\`{e}}le M. Hamel and
Tommi S. Jaakkola},
title = {K-ary Clustering with Optimal Leaf Ordering for Gene Expression Data},
journal = {Bioinform.},
volume = {19},
number = {9},
pages = {1070--1078},
year = {2003},
url = {https://doi.org/10.1093/bioinformatics/btg030},
doi = {10.1093/BIOINFORMATICS/BTG030},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Bar-JosephDGSHJ03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/Bar-JosephGGJS03,
author = {Ziv Bar{-}Joseph and
Georg K. Gerber and
David K. Gifford and
Tommi S. Jaakkola and
Itamar Simon},
title = {Continuous Representations of Time-Series Gene Expression Data},
journal = {J. Comput. Biol.},
volume = {10},
number = {3/4},
pages = {341--356},
year = {2003},
url = {https://doi.org/10.1089/10665270360688057},
doi = {10.1089/10665270360688057},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/Bar-JosephGGJS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/expert/HarteminkGJY02,
author = {Alexander J. Hartemink and
David K. Gifford and
Tommi S. Jaakkola and
Richard A. Young},
title = {Bayesian Methods for Elucidating Genetic Regulatory Networks},
journal = {{IEEE} Intell. Syst.},
volume = {17},
number = {2},
pages = {37--43},
year = {2002},
url = {https://doi.org/10.1109/MIS.2002.999218},
doi = {10.1109/MIS.2002.999218},
timestamp = {Fri, 06 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/expert/HarteminkGJY02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mst/KhodorG02,
author = {Julia Khodor and
David K. Gifford},
title = {Programmed Mutagenesis Is Universal},
journal = {Theory Comput. Syst.},
volume = {35},
number = {5},
pages = {483--500},
year = {2002},
url = {https://doi.org/10.1007/s00224-002-1044-8},
doi = {10.1007/S00224-002-1044-8},
timestamp = {Sun, 28 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/mst/KhodorG02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ngc/KhodorG02,
author = {Julia Khodor and
David K. Gifford},
title = {Experimental Efficiency of Programmed Mutagenesis},
journal = {New Gener. Comput.},
volume = {20},
number = {3},
pages = {307--315},
year = {2002},
url = {https://doi.org/10.1007/BF03037363},
doi = {10.1007/BF03037363},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ngc/KhodorG02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/HarteminkGJY02,
author = {Alexander J. Hartemink and
David K. Gifford and
Tommi S. Jaakkola and
Richard A. Young},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein},
title = {Combining Location and Expression Data for Principled Discovery of
Genetic Regulatory Network Models},
booktitle = {Proceedings of the 7th Pacific Symposium on Biocomputing, {PSB} 2002,
Lihue, Hawaii, USA, January 3-7, 2002},
pages = {437--449},
year = {2002},
url = {http://psb.stanford.edu/psb-online/proceedings/psb02/hartemink.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/HarteminkGJY02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Bar-JosephGGJS02,
author = {Ziv Bar{-}Joseph and
Georg K. Gerber and
David K. Gifford and
Tommi S. Jaakkola and
Itamar Simon},
editor = {Gene Myers and
Sridhar Hannenhalli and
David Sankoff and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {A new approach to analyzing gene expression time series data},
booktitle = {Proceedings of the Sixth Annual International Conference on Computational
Biology, {RECOMB} 2002, Washington, DC, USA, April 18-21, 2002},
pages = {39--48},
publisher = {{ACM}},
year = {2002},
url = {https://doi.org/10.1145/565196.565202},
doi = {10.1145/565196.565202},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Bar-JosephGGJS02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/Bar-JosephDGHJS02,
author = {Ziv Bar{-}Joseph and
Erik D. Demaine and
David K. Gifford and
Ang{\`{e}}le M. Hamel and
Tommi S. Jaakkola and
Nathan Srebro},
editor = {Roderic Guig{\'{o}} and
Dan Gusfield},
title = {K-ary Clustering with Optimal Leaf Ordering for Gene Expression Data},
booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI}
2002, Rome, Italy, September 17-21, 2002, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2452},
pages = {506--520},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/3-540-45784-4\_39},
doi = {10.1007/3-540-45784-4\_39},
timestamp = {Tue, 14 May 2019 10:00:40 +0200},
biburl = {https://dblp.org/rec/conf/wabi/Bar-JosephDGHJS02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dna/KhodorG01,
author = {Julia Khodor and
David K. Gifford},
editor = {Natasa Jonoska and
Nadrian C. Seeman},
title = {Programmed Mutagenesis Is a Universal Model of Computation},
booktitle = {{DNA} Computing, 7th International Workshop on DNA-Based Computers,
DNA7, Tampa, Florida, USA, June 10-13, 2001, Revised Papers},
series = {Lecture Notes in Computer Science},
volume = {2340},
pages = {300--307},
publisher = {Springer},
year = {2001},
url = {https://doi.org/10.1007/3-540-48017-X\_28},
doi = {10.1007/3-540-48017-X\_28},
timestamp = {Tue, 14 May 2019 10:00:40 +0200},
biburl = {https://dblp.org/rec/conf/dna/KhodorG01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/Bar-JosephGJ01,
author = {Ziv Bar{-}Joseph and
David K. Gifford and
Tommi S. Jaakkola},
title = {Fast optimal leaf ordering for hierarchical clustering},
booktitle = {Proceedings of the Ninth International Conference on Intelligent Systems
for Molecular Biology, July 21-25, 2001, Copenhagen, Denmark},
pages = {22--29},
year = {2001},
timestamp = {Fri, 15 May 2015 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ismb/Bar-JosephGJ01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/HarteminkGJY01,
author = {Alexander J. Hartemink and
David K. Gifford and
Tommi S. Jaakkola and
Richard A. Young},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein},
title = {Using Graphical Models and Genomic Expression Data to Statistically
Validate Models of Genetic Regulatory Networks},
booktitle = {Proceedings of the 6th Pacific Symposium on Biocomputing, {PSB} 2001,
Hawaii, USA, January 3-7, 2001},
pages = {422--433},
year = {2001},
url = {http://psb.stanford.edu/psb-online/proceedings/psb01/hartemink.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/HarteminkGJY01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sosp/SnoerenCG01,
author = {Alex C. Snoeren and
Kenneth Conley and
David K. Gifford},
editor = {Keith Marzullo and
Mahadev Satyanarayanan},
title = {Mesh Based Content Routing using {XML}},
booktitle = {Proceedings of the 18th {ACM} Symposium on Operating System Principles,
{SOSP} 2001, Chateau Lake Louise, Banff, Alberta, Canada, October
21-24, 2001},
pages = {160--173},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/502034.502050},
doi = {10.1145/502034.502050},
timestamp = {Thu, 11 Jul 2019 14:55:12 +0200},
biburl = {https://dblp.org/rec/conf/sosp/SnoerenCG01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/osdi/JannottiGJKO00,
author = {John Jannotti and
David K. Gifford and
Kirk L. Johnson and
M. Frans Kaashoek and
James W. O'Toole Jr.},
editor = {Michael B. Jones and
M. Frans Kaashoek},
title = {Overcast: Reliable Multicasting with an Overlay Network},
booktitle = {4th Symposium on Operating System Design and Implementation {(OSDI}
2000), San Diego, California, USA, October 23-25, 2000},
pages = {197--212},
publisher = {{USENIX} Association},
year = {2000},
url = {http://dl.acm.org/citation.cfm?id=1251243},
timestamp = {Wed, 10 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/osdi/JannottiGJKO00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/dimacs/dimacs54,
editor = {Erik Winfree and
David K. Gifford},
title = {{DNA} Based Computers, Proceedings of a {DIMACS} Workshop, New Brunswick,
New Jersey, USA, June 14-15, 1999},
series = {{DIMACS} Series in Discrete Mathematics and Theoretical Computer Science},
volume = {54},
publisher = {{DIMACS/AMS}},
year = {2000},
url = {https://doi.org/10.1090/dimacs/054},
doi = {10.1090/DIMACS/054},
isbn = {978-0-8218-2053-7},
timestamp = {Mon, 22 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/dimacs/dimacs54.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dimacs/HarteminkMG99,
author = {Alexander J. Hartemink and
Tarjei S. Mikkelsen and
David K. Gifford},
editor = {Erik Winfree and
David K. Gifford},
title = {Simulating biological reactions: {A} modular approach},
booktitle = {{DNA} Based Computers, Proceedings of a {DIMACS} Workshop, New Brunswick,
New Jersey, USA, June 14-15, 1999},
series = {{DIMACS} Series in Discrete Mathematics and Theoretical Computer Science},
volume = {54},
pages = {111--121},
publisher = {{DIMACS/AMS}},
year = {1999},
url = {https://doi.org/10.1090/dimacs/054/10},
doi = {10.1090/DIMACS/054/10},
timestamp = {Mon, 22 May 2023 16:07:35 +0200},
biburl = {https://dblp.org/rec/conf/dimacs/HarteminkMG99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dimacs/HarteminkG97,
author = {Alexander J. Hartemink and
David K. Gifford},
editor = {Harvey Rubin and
David Harlan Wood},
title = {Thermodynamic simulation of deoxyoligonucleotide hybridization for
{DNA} computation},
booktitle = {{DNA} Based Computers, Proceedings of a {DIMACS} Workshop, Philadelphia,
Pennsylvania, USA, June 23-25, 1997},
series = {{DIMACS} Series in Discrete Mathematics and Theoretical Computer Science},
volume = {48},
pages = {25--37},
publisher = {{DIMACS/AMS}},
year = {1997},
url = {https://doi.org/10.1090/dimacs/048/02},
doi = {10.1090/DIMACS/048/02},
timestamp = {Mon, 22 May 2023 16:07:35 +0200},
biburl = {https://dblp.org/rec/conf/dimacs/HarteminkG97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dimacs/KhodorG97,
author = {Julia Khodor and
David K. Gifford},
editor = {Harvey Rubin and
David Harlan Wood},
title = {The efficiency of sequence-specific separation of {DNA} mixtures for
biological computing},
booktitle = {{DNA} Based Computers, Proceedings of a {DIMACS} Workshop, Philadelphia,
Pennsylvania, USA, June 23-25, 1997},
series = {{DIMACS} Series in Discrete Mathematics and Theoretical Computer Science},
volume = {48},
pages = {39--46},
publisher = {{DIMACS/AMS}},
year = {1997},
url = {https://doi.org/10.1090/dimacs/048/03},
doi = {10.1090/DIMACS/048/03},
timestamp = {Thu, 09 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/dimacs/KhodorG97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sigir/VelezWSG97,
author = {Bienvenido V{\'{e}}lez and
Ron Weiss and
Mark A. Sheldon and
David K. Gifford},
editor = {Nicholas J. Belkin and
Arcot Desai Narasimhalu and
Peter Willett and
William R. Hersh and
Fazli Can and
Ellen M. Voorhees},
title = {Fast and Effective Query Refinement},
booktitle = {{SIGIR} '97: Proceedings of the 20th Annual International {ACM} {SIGIR}
Conference on Research and Development in Information Retrieval, July
27-31, 1997, Philadelphia, PA, {USA}},
pages = {6--15},
publisher = {{ACM}},
year = {1997},
url = {https://doi.org/10.1145/258525.258528},
doi = {10.1145/258525.258528},
timestamp = {Tue, 19 Sep 2023 11:58:25 +0200},
biburl = {https://dblp.org/rec/conf/sigir/VelezWSG97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ht/WeissVSNSDG96,
author = {Ron Weiss and
Bienvenido V{\'{e}}lez and
Mark A. Sheldon and
Chanathip Namprempre and
P{\'{e}}ter Szil{\'{a}}gyi and
Andrzej Duda and
David K. Gifford},
editor = {David Stotts},
title = {HyPursuit: {A} Hierarchical Network Search Engine that Exploits Content-Link
Hypertext Clustering},
booktitle = {Hypertext '96, The Seventh {ACM} Conference on Hypertext, Washington,
DC, USA, March 16-20, 1996},
pages = {180--193},
publisher = {{ACM}},
year = {1996},
url = {https://doi.org/10.1145/234828.234846},
doi = {10.1145/234828.234846},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ht/WeissVSNSDG96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cn/SheldonDG95,
author = {Mark A. Sheldon and
Andrzej Duda and
David K. Gifford},
title = {Discover: {A} Resource Discovery System Based on Content Routing},
journal = {Comput. Networks {ISDN} Syst.},
volume = {27},
number = {6},
pages = {953--972},
year = {1995},
url = {https://doi.org/10.1016/0169-7552(95)00044-8},
doi = {10.1016/0169-7552(95)00044-8},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/cn/SheldonDG95.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ieeemm/WeissDG95,
author = {Ron Weiss and
Andrzej Duda and
David K. Gifford},
title = {Composition and Search with a Video Algebra},
journal = {{IEEE} Multim.},
volume = {2},
number = {1},
pages = {12--25},
year = {1995},
url = {https://doi.org/10.1109/93.368596},
doi = {10.1109/93.368596},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ieeemm/WeissDG95.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/compcon/GiffordSPT95,
author = {David K. Gifford and
Lawrence C. Stewart and
Andrew C. Payne and
G. Winfield Treese},
title = {Payment for Open Networks},
booktitle = {{COMPCON} '95: Technologies for the Information Superhighway, Digest
of Papers, San Francisco, California, USA, March 5-9, 1995},
pages = {26--31},
publisher = {{IEEE} Computer Society},
year = {1995},
url = {https://doi.org/10.1109/CMPCON.1995.512359},
doi = {10.1109/CMPCON.1995.512359},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/compcon/GiffordSPT95.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sosp/JosephdTGK95,
author = {Anthony D. Joseph and
Alan F. deLespinasse and
Joshua A. Tauber and
David K. Gifford and
M. Frans Kaashoek},
editor = {Michael B. Jones},
title = {Rover: {A} Toolkit for Mobile Information Access},
booktitle = {Proceedings of the Fifteenth {ACM} Symposium on Operating System Principles,
{SOSP} 1995, Copper Mountain Resort, Colorado, USA, December 3-6,
1995},
pages = {156--171},
publisher = {{ACM}},
year = {1995},
url = {https://doi.org/10.1145/224056.224069},
doi = {10.1145/224056.224069},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sosp/JosephdTGK95.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/uwec/GiffordSPT95,
author = {David K. Gifford and
Lawrence C. Stewart and
Andrew C. Payne and
G. Winfield Treese},
title = {Payment Switches for Open Networks},
booktitle = {First {USENIX} Workshop on Electronic Commerce, New York, New York,
USA, July 11-12, 1995},
publisher = {{USENIX} Association},
year = {1995},
url = {https://www.usenix.org/conference/first-usenix-workshop-electronic-commerce/payment-switches-open-networks},
timestamp = {Wed, 04 Jul 2018 13:06:34 +0200},
biburl = {https://dblp.org/rec/conf/uwec/GiffordSPT95.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/edbt/SheldonDWOG94,
author = {Mark A. Sheldon and
Andrzej Duda and
Ron Weiss and
James W. O'Toole Jr. and
David K. Gifford},
editor = {Matthias Jarke and
Janis A. Bubenko Jr. and
Keith G. Jeffery},
title = {Content Routing for Distributed Information Servers},
booktitle = {Advances in Database Technology - EDBT'94. 4th International Conference
on Extending Database Technology, Cambridge, United Kingdom, March
28-31, 1994, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {779},
pages = {109--122},
publisher = {Springer},
year = {1994},
url = {https://doi.org/10.1007/3-540-57818-8\_45},
doi = {10.1007/3-540-57818-8\_45},
timestamp = {Wed, 10 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/edbt/SheldonDWOG94.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icmcs/WeissDG94,
author = {Ron Weiss and
Andrzej Duda and
David K. Gifford},
title = {Content-Based Access to Algebraic Video},
booktitle = {Proceedings of the International Conference on Multimedia Computing
and Systems, {ICMCS} 1994, Boston, Massachusetts, USA, May 14-19,
1994},
pages = {140--151},
publisher = {{IEEE} Computer Society},
year = {1994},
url = {https://doi.org/10.1109/MMCS.1994.292446},
doi = {10.1109/MMCS.1994.292446},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icmcs/WeissDG94.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/lfp/ReistadG94,
author = {Brian Reistad and
David K. Gifford},
editor = {Robert R. Kessler},
title = {Static Dependent Costs for Estimating Execution Time},
booktitle = {Proceedings of the 1994 {ACM} Conference on {LISP} and Functional
Programming, Orlando, Florida, USA, 27-29 June 1994},
pages = {65--78},
publisher = {{ACM}},
year = {1994},
url = {https://doi.org/10.1145/182409.182439},
doi = {10.1145/182409.182439},
timestamp = {Fri, 06 Aug 2021 15:08:55 +0200},
biburl = {https://dblp.org/rec/conf/lfp/ReistadG94.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sosp/OTooleNG93,
author = {James W. O'Toole Jr. and
Scott Nettles and
David K. Gifford},
editor = {Andrew P. Black and
Barbara Liskov},
title = {Concurrent Compacting Garbage Collection of a Persistent Heap},
booktitle = {Proceedings of the Fourteenth {ACM} Symposium on Operating System
Principles, {SOSP} 1993, The Grove Park Inn and Country Club, Asheville,
North Carolina, USA, December 5-8, 1993},
pages = {161--174},
publisher = {{ACM}},
year = {1993},
url = {https://doi.org/10.1145/168619.168632},
doi = {10.1145/168619.168632},
timestamp = {Wed, 10 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sosp/OTooleNG93.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/loplas/DornicJG92,
author = {Vincent Dornic and
Pierre Jouvelot and
David K. Gifford},
title = {Polymorphic Time Systems for Estimating Program Complexity},
journal = {{LOPLAS}},
volume = {1},
number = {1},
pages = {33--45},
year = {1992},
url = {https://doi.org/10.1145/130616.130620},
doi = {10.1145/130616.130620},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/loplas/DornicJG92.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/sigops/Gifford92,
author = {David K. Gifford},
title = {Five Forces Shaping Experimental Computer Science},
journal = {{ACM} {SIGOPS} Oper. Syst. Rev.},
volume = {26},
number = {1},
pages = {6},
year = {1992},
timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/sigops/Gifford92.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sigopsE/OTooleG92,
author = {James W. O'Toole Jr. and
David K. Gifford},
editor = {Jean{-}Pierre Ban{\^{a}}tre},
title = {Names should mean what, not where},
booktitle = {Proceedings of the 5th {ACM} {SIGOPS} European Workshop: Models and
Paradigms for Distributed Systems Structuring, 1992, Mont Saint-Michel,
France, September 21-23, 1992},
publisher = {{ACM}},
year = {1992},
url = {https://doi.org/10.1145/506378.506399},
doi = {10.1145/506378.506399},
timestamp = {Wed, 10 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sigopsE/OTooleG92.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dagstuhl/GiffordO91,
author = {David K. Gifford and
James W. O'Toole Jr.},
editor = {Arthur I. Karshmer and
J{\"{u}}rgen Nehmer},
title = {Intelligent File Systems for Object Repositories},
booktitle = {Operating Systems of the 90s and Beyond, International Workshop, Dagstuhl
Castle, Germany, July 8-12, 1991, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {563},
pages = {20--24},
publisher = {Springer},
year = {1991},
url = {https://doi.org/10.1007/BFb0024516},
doi = {10.1007/BFB0024516},
timestamp = {Wed, 10 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/dagstuhl/GiffordO91.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/popl/JouvelotG91,
author = {Pierre Jouvelot and
David K. Gifford},
editor = {David S. Wise},
title = {Algebraic Reconstruction of Types and Effects},
booktitle = {Conference Record of the Eighteenth Annual {ACM} Symposium on Principles
of Programming Languages, Orlando, Florida, USA, January 21-23, 1991},
pages = {303--310},
publisher = {{ACM} Press},
year = {1991},
url = {https://doi.org/10.1145/99583.99623},
doi = {10.1145/99583.99623},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/popl/JouvelotG91.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sas/DornicJG91,
author = {Vincent Dornic and
Pierre Jouvelot and
David K. Gifford},
editor = {Michel Billaud and
Pierre Cast{\'{e}}ran and
Marc{-}Michel Corsini and
Kaninda Musumbu and
Antoine Rauzy},
title = {Polymorphic Time Systems for Estimating Program Complexity},
booktitle = {Actes JTASPEFL'91 (Bordeaux, France), October 1991, Laboratoire Bordelais
de Recherche en Informatique (LaBRI), Proceedings},
series = {Series Bigre},
volume = {74},
pages = {9--17},
publisher = {Atelier Irisa, IRISA, Campus de Beaulieu},
year = {1991},
timestamp = {Thu, 12 Jul 2018 08:27:32 +0200},
biburl = {https://dblp.org/rec/conf/sas/DornicJG91.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sosp/GiffordJSO91,
author = {David K. Gifford and
Pierre Jouvelot and
Mark A. Sheldon and
James W. O'Toole Jr.},
editor = {Henry M. Levy},
title = {Semantic File Systems},
booktitle = {Proceedings of the Thirteenth {ACM} Symposium on Operating System
Principles, {SOSP} 1991, Asilomar Conference Center, Pacific Grove,
California, USA, October 13-16, 1991},
pages = {16--25},
publisher = {{ACM}},
year = {1991},
url = {https://doi.org/10.1145/121132.121138},
doi = {10.1145/121132.121138},
timestamp = {Wed, 10 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sosp/GiffordJSO91.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cacm/Gifford90,
author = {David K. Gifford},
title = {Polychannel Systems for Mass Digital Communications},
journal = {Commun. {ACM}},
volume = {33},
number = {2},
pages = {141--151},
year = {1990},
url = {https://doi.org/10.1145/75577.75580},
doi = {10.1145/75577.75580},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/cacm/Gifford90.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/toplas/StamosG90,
author = {James W. Stamos and
David K. Gifford},
title = {Remote Evaluation},
journal = {{ACM} Trans. Program. Lang. Syst.},
volume = {12},
number = {4},
pages = {537--565},
year = {1990},
url = {https://doi.org/10.1145/88616.88631},
doi = {10.1145/88616.88631},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/toplas/StamosG90.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tse/StamosG90,
author = {James W. Stamos and
David K. Gifford},
title = {Implementing Remote Evaluation},
journal = {{IEEE} Trans. Software Eng.},
volume = {16},
number = {7},
pages = {710--722},
year = {1990},
url = {https://doi.org/10.1109/32.56097},
doi = {10.1109/32.56097},
timestamp = {Wed, 17 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tse/StamosG90.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/lfp/SheldonG90,
author = {Mark A. Sheldon and
David K. Gifford},
editor = {Gilles Kahn},
title = {Static Dependent Types for First Class Modules},
booktitle = {Proceedings of the 1990 {ACM} Conference on {LISP} and Functional
Programming, {LFP} 1990, Nice, France, 27-29 June 1990},
pages = {20--29},
publisher = {{ACM}},
year = {1990},
url = {https://doi.org/10.1145/91556.91577},
doi = {10.1145/91556.91577},
timestamp = {Fri, 06 Aug 2021 15:08:55 +0200},
biburl = {https://dblp.org/rec/conf/lfp/SheldonG90.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pldi/OTooleG89,
author = {James W. O'Toole Jr. and
David K. Gifford},
editor = {Richard L. Wexelblat},
title = {Type Reconstruction with First-Class Polymorphic Values},
booktitle = {Proceedings of the {ACM} SIGPLAN'89 Conference on Programming Language
Design and Implementation (PLDI), Portland, Oregon, USA, June 21-23,
1989},
pages = {207--217},
publisher = {{ACM}},
year = {1989},
url = {https://doi.org/10.1145/73141.74836},
doi = {10.1145/73141.74836},
timestamp = {Fri, 09 Jul 2021 14:03:46 +0200},
biburl = {https://dblp.org/rec/conf/pldi/OTooleG89.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pldi/JouvelotG89,
author = {Pierre Jouvelot and
David K. Gifford},
editor = {Richard L. Wexelblat},
title = {Reasoning about Continuations with Control Effects},
booktitle = {Proceedings of the {ACM} SIGPLAN'89 Conference on Programming Language
Design and Implementation (PLDI), Portland, Oregon, USA, June 21-23,
1989},
pages = {218--226},
publisher = {{ACM}},
year = {1989},
url = {https://doi.org/10.1145/73141.74837},
doi = {10.1145/73141.74837},
timestamp = {Fri, 09 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/pldi/JouvelotG89.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cacm/GiffordNS88,
author = {David K. Gifford and
Roger M. Needham and
Michael D. Schroeder},
title = {The Cedar System},
journal = {Commun. {ACM}},
volume = {31},
number = {3},
pages = {288--298},
year = {1988},
url = {https://doi.org/10.1145/42392.42398},
doi = {10.1145/42392.42398},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/cacm/GiffordNS88.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tocs/GiffordG88,
author = {David K. Gifford and
Nathan Glasser},
title = {Remote Pipes and Procedures for Efficient Distributed Communication},
journal = {{ACM} Trans. Comput. Syst.},
volume = {6},
number = {3},
pages = {258--283},
year = {1988},
url = {https://doi.org/10.1145/45059.45061},
doi = {10.1145/45059.45061},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tocs/GiffordG88.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccl/JouvelotG88,
author = {Pierre Jouvelot and
David K. Gifford},
title = {The {FX-87} Interpreter},
booktitle = {1988 Internation Conference on Computer Languages, October 9-13, 1988,
Miami, Florida, {USA}},
pages = {65--72},
publisher = {{IEEE} Computer Society},
year = {1988},
url = {https://doi.org/10.1109/ICCL.1988.13044},
doi = {10.1109/ICCL.1988.13044},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iccl/JouvelotG88.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/popl/LucassenG88,
author = {John M. Lucassen and
David K. Gifford},
editor = {Jeanne Ferrante and
Peter Mager},
title = {Polymorphic Effect Systems},
booktitle = {Conference Record of the Fifteenth Annual {ACM} Symposium on Principles
of Programming Languages, San Diego, California, USA, January 10-13,
1988},
pages = {47--57},
publisher = {{ACM} Press},
year = {1988},
url = {https://doi.org/10.1145/73560.73564},
doi = {10.1145/73560.73564},
timestamp = {Thu, 16 Sep 2021 11:02:28 +0200},
biburl = {https://dblp.org/rec/conf/popl/LucassenG88.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cacm/SpectorG84,
author = {Alfred Z. Spector and
David K. Gifford},
title = {Case Study: IBM's System/360-370 Architecture},
journal = {Commun. {ACM}},
volume = {30},
number = {4},
pages = {291--307},
year = {1987},
url = {https://doi.org/10.1145/32232.32233},
doi = {10.1145/32232.32233},
timestamp = {Wed, 27 Feb 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/cacm/SpectorG84.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cacm/SpectorG86,
author = {Alfred Z. Spector and
David K. Gifford},
title = {A Computer Science Perspective of Bridge Design},
journal = {Commun. {ACM}},
volume = {29},
number = {4},
pages = {267--283},
year = {1986},
url = {https://doi.org/10.1145/5684.6327},
doi = {10.1145/5684.6327},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/cacm/SpectorG86.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/lfp/GiffordL86,
author = {David K. Gifford and
John M. Lucassen},
editor = {William L. Scherlis and
John H. Williams and
Richard P. Gabriel},
title = {Integrating Functional and Imperative Programming},
booktitle = {Proceedings of the 1986 {ACM} Conference on {LISP} and Functional
Programming, {LFP} 1986, Cambridge, Massachusetts, USA, August 4-6,
1986},
pages = {28--38},
publisher = {{ACM}},
year = {1986},
url = {https://doi.org/10.1145/319838.319848},
doi = {10.1145/319838.319848},
timestamp = {Fri, 06 Aug 2021 15:08:55 +0200},
biburl = {https://dblp.org/rec/conf/lfp/GiffordL86.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cacm/GiffordS85,
author = {David K. Gifford and
Alfred Z. Spector},
title = {The Cirrus Banking Network},
journal = {Commun. {ACM}},
volume = {28},
number = {8},
pages = {797--807},
year = {1985},
url = {https://doi.org/10.1145/4021.4022},
doi = {10.1145/4021.4022},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/cacm/GiffordS85.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jsac/GiffordLB85,
author = {David K. Gifford and
John M. Lucassen and
Stephen T. Berlin},
title = {The Application of Digital Broadcast Communication to Large Scale
Information Systems},
journal = {{IEEE} J. Sel. Areas Commun.},
volume = {3},
number = {3},
pages = {457--467},
year = {1985},
url = {https://doi.org/10.1109/JSAC.1985.1146218},
doi = {10.1109/JSAC.1985.1146218},
timestamp = {Thu, 02 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jsac/GiffordLB85.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/compcon/GiffordD85,
author = {David K. Gifford and
James E. Donahue},
title = {Coordinating Independent Atomic Actions},
booktitle = {Spring COMPCON'85, Digest of Papers, Thirtieth {IEEE} Computer Society
International Conference, San Francisco, California, USA, February
25-28, 1985},
pages = {92--95},
publisher = {{IEEE} Computer Society},
year = {1985},
timestamp = {Wed, 28 Jun 2006 12:59:39 +0200},
biburl = {https://dblp.org/rec/conf/compcon/GiffordD85.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sosp/SchroederGN85,
author = {Michael D. Schroeder and
David K. Gifford and
Roger M. Needham},
editor = {Forest Baskett and
Andrew Birrell and
David R. Cheriton},
title = {A Caching File System For a Programmer's Workstation},
booktitle = {Proceedings of the Tenth {ACM} Symposium on Operating System Principles,
{SOSP} 1985, Orcas Island, Washington, USA, December 1-4, 1985},
pages = {25--34},
publisher = {{ACM}},
year = {1985},
url = {https://doi.org/10.1145/323647.323632},
doi = {10.1145/323647.323632},
timestamp = {Tue, 06 Nov 2018 16:59:32 +0100},
biburl = {https://dblp.org/rec/conf/sosp/SchroederGN85.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sosp/GiffordBBL85,
author = {David K. Gifford and
Robert W. Baldwin and
Stephen T. Berlin and
John M. Lucassen},
editor = {Forest Baskett and
Andrew Birrell and
David R. Cheriton},
title = {An Architecture for Large Scale Information Systems},
booktitle = {Proceedings of the Tenth {ACM} Symposium on Operating System Principles,
{SOSP} 1985, Orcas Island, Washington, USA, December 1-4, 1985},
pages = {161--170},
publisher = {{ACM}},
year = {1985},
url = {https://doi.org/10.1145/323647.323644},
doi = {10.1145/323647.323644},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sosp/GiffordBBL85.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cacm/GiffordS84,
author = {David K. Gifford and
Alfred Z. Spector},
title = {The {TWA} Reservation System},
journal = {Commun. {ACM}},
volume = {27},
number = {7},
pages = {649--665},
year = {1984},
url = {https://doi.org/10.1145/358105.358192},
doi = {10.1145/358105.358192},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/cacm/GiffordS84.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cacm/GiffordS84a,
author = {David K. Gifford and
Alfred Z. Spector},
title = {The Space Shuttle Primary Computer System},
journal = {Commun. {ACM}},
volume = {27},
number = {9},
pages = {872--900},
year = {1984},
url = {https://doi.org/10.1145/358234.358246},
doi = {10.1145/358234.358246},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/cacm/GiffordS84a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cacm/Gifford82,
author = {David K. Gifford},
title = {Cryptographic Sealing for Information Secrecy and Authentication},
journal = {Commun. {ACM}},
volume = {25},
number = {4},
pages = {274--286},
year = {1982},
url = {https://doi.org/10.1145/358468.358493},
doi = {10.1145/358468.358493},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/cacm/Gifford82.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/csur/Gifford82,
author = {David K. Gifford},
title = {Surveyor's Forum: Technical Transactions},
journal = {{ACM} Comput. Surv.},
volume = {14},
number = {2},
pages = {316},
year = {1982},
url = {https://doi.org/10.1145/356876.356885},
doi = {10.1145/356876.356885},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/csur/Gifford82.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cn/Gifford81,
author = {David K. Gifford},
title = {Violet, an Experimental Decentralized System},
journal = {Comput. Networks},
volume = {5},
pages = {423--433},
year = {1981},
url = {https://doi.org/10.1016/0376-5075(81)90042-8},
doi = {10.1016/0376-5075(81)90042-8},
timestamp = {Wed, 19 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/cn/Gifford81.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sosp/Gifford81,
author = {David K. Gifford},
editor = {John Howard and
David P. Reed},
title = {Cryptographic Sealing for Information Secrecy and Authentication (Summary)},
booktitle = {Proceedings of the Eighth Symposium on Operating System Principles,
{SOSP} 1981, Asilomar Conference Grounds, Pacific Grove, California,
USA, December 14-16, 1981},
pages = {123--124},
publisher = {{ACM}},
year = {1981},
url = {https://doi.org/10.1145/800216.806599},
doi = {10.1145/800216.806599},
timestamp = {Tue, 06 Nov 2018 16:59:32 +0100},
biburl = {https://dblp.org/rec/conf/sosp/Gifford81.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sosp/Gifford79,
author = {David K. Gifford},
editor = {Michael D. Schroeder and
Anita K. Jones},
title = {Weighted Voting for Replicated Data},
booktitle = {Proceedings of the Seventh Symposium on Operating System Principles,
{SOSP} 1979, Asilomar Conference Grounds, Pacific Grove, California,
USA, 10-12, December 1979},
pages = {150--162},
publisher = {{ACM}},
year = {1979},
url = {https://doi.org/10.1145/800215.806583},
doi = {10.1145/800215.806583},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sosp/Gifford79.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cacm/Gifford77,
author = {David K. Gifford},
title = {Hardware Estimation of Process' Primary Memory Requirements},
journal = {Commun. {ACM}},
volume = {20},
number = {9},
pages = {655--663},
year = {1977},
url = {https://doi.org/10.1145/359810.359833},
doi = {10.1145/359810.359833},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cacm/Gifford77.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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