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ORCIDBibTeX records: Sampsa Hautaniemi
@inproceedings{DBLP:conf/icbet/VundavilliTHDK22,
author = {Haswanth Vundavilli and
Manuela Tumiati and
Sampsa Hautaniemi and
Aniruddha Datta and
Liisa Kauppi},
title = {Image Processing Pipeline to Compute Homologous Recombination Score},
booktitle = {{ICBET} 2022: 12th International Conference on Biomedical Engineering
and Technology, Tokyo, Japan, April 20 - 23, 2022},
pages = {51--56},
publisher = {{ACM}},
year = {2022},
url = {https://doi.org/10.1145/3535694.3535704},
doi = {10.1145/3535694.3535704},
timestamp = {Wed, 24 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbet/VundavilliTHDK22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/HeBOHZZWECJHHHH21,
author = {Liye He and
Daria Bulanova and
Jaana Oikkonen and
Antti H{\"{a}}kkinen and
Kaiyang Zhang and
Shuyu Zheng and
Wenyu Wang and
Erdogan Pekcan Erkan and
Olli Carp{\'{e}}n and
Titta Joutsiniemi and
Sakari Hietanen and
Johanna Hynninen and
Kaisa Huhtinen and
Sampsa Hautaniemi and
Anna V{\"{a}}h{\"{a}}rautio and
Jing Tang and
Krister Wennerberg and
Tero Aittokallio},
title = {Network-guided identification of cancer-selective combinatorial therapies
in ovarian cancer},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab272},
doi = {10.1093/BIB/BBAB272},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/HeBOHZZWECJHHHH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CasadoLRKPHPHHC21,
author = {Julia Casado and
Oskari Lehtonen and
Ville Rantanen and
Katja Kaipio and
Luca Pasquini and
Antti H{\"{a}}kkinen and
Elenora Petrucci and
Johanna Hynninen and
Sakari Hietanen and
Olli Carp{\'{e}}n and
Mauro Biffoni and
Anniina F{\"{a}}rkkil{\"{a}} and
Sampsa Hautaniemi},
title = {Agile workflow for interactive analysis of mass cytometry data},
journal = {Bioinform.},
volume = {37},
number = {9},
pages = {1263--1268},
year = {2021},
url = {https://doi.org/10.1093/bioinformatics/btaa946},
doi = {10.1093/BIOINFORMATICS/BTAA946},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CasadoLRKPHPHHC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HakkinenZAAEDKL21,
author = {Antti H{\"{a}}kkinen and
Kaiyang Zhang and
Amjad Alkodsi and
Noora Andersson and
Erdogan Pekcan Erkan and
Jun Dai and
Katja Kaipio and
Tarja Lamminen and
Naziha Mansuri and
Kaisa Huhtinen and
Anna V{\"{a}}h{\"{a}}rautio and
Olli Carp{\'{e}}n and
Johanna Hynninen and
Sakari Hietanen and
Rainer Lehtonen and
Sampsa Hautaniemi},
title = {{PRISM:} recovering cell-type-specific expression profiles from individual
composite RNA-seq samples},
journal = {Bioinform.},
volume = {37},
number = {18},
pages = {2882--2888},
year = {2021},
url = {https://doi.org/10.1093/bioinformatics/btab178},
doi = {10.1093/BIOINFORMATICS/BTAB178},
timestamp = {Tue, 12 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HakkinenZAAEDKL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CerveraRKAPRPFH21,
author = {Alejandra Cervera and
Heidi Rausio and
Tiia K{\"{a}}hk{\"{o}}nen and
Noora Andersson and
Gabriele Partel and
Ville Rantanen and
Giulia Paciello and
Elisa Ficarra and
Johanna Hynninen and
Sakari Hietanen and
Olli Carp{\'{e}}n and
Rainer Lehtonen and
Sampsa Hautaniemi and
Kaisa Huhtinen},
title = {{FUNGI:} FUsioN Gene Integration toolset},
journal = {Bioinform.},
volume = {37},
number = {19},
pages = {3353--3355},
year = {2021},
url = {https://doi.org/10.1093/bioinformatics/btab206},
doi = {10.1093/BIOINFORMATICS/BTAB206},
timestamp = {Tue, 12 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CerveraRKAPRPFH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HakkinenKCKLPHH20,
author = {Antti H{\"{a}}kkinen and
Juha Koiranen and
Julia Casado and
Katja Kaipio and
Oskari Lehtonen and
Eleonora Petrucci and
Johanna Hynninen and
Sakari Hietanen and
Olli Carp{\'{e}}n and
Luca Pasquini and
Mauro Biffoni and
Rainer Lehtonen and
Sampsa Hautaniemi},
title = {qSNE: quadratic rate t-SNE optimizer with automatic parameter tuning
for large datasets},
journal = {Bioinform.},
volume = {36},
number = {20},
pages = {5086--5092},
year = {2020},
url = {https://doi.org/10.1093/bioinformatics/btaa637},
doi = {10.1093/BIOINFORMATICS/BTAA637},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HakkinenKCKLPHH20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CerveraROLNACFH19,
author = {Alejandra Cervera and
Ville Rantanen and
Kristian Ovaska and
Marko Laakso and
Javier Nu{\~{n}}ez{-}Fontarnau and
Amjad Alkodsi and
Julia Casado and
Chiara Facciotto and
Antti H{\"{a}}kkinen and
Riku Louhimo and
Sirkku Karinen and
Kaiyang Zhang and
Kari Lavikka and
Lauri Lyly and
Maninder Pal Singh and
Sampsa Hautaniemi},
title = {Anduril 2: upgraded large-scale data integration framework},
journal = {Bioinform.},
volume = {35},
number = {19},
pages = {3815--3817},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz133},
doi = {10.1093/BIOINFORMATICS/BTZ133},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CerveraROLNACFH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HakkinenAFZKLCG18,
author = {Antti H{\"{a}}kkinen and
Amjad Alkodsi and
Chiara Facciotto and
Kaiyang Zhang and
Katja Kaipio and
Sirpa Lepp{\"{a}} and
Olli Carp{\'{e}}n and
Seija Gr{\'{e}}nman and
Johanna Hynninen and
Sakari Hietanen and
Rainer Lehtonen and
Sampsa Hautaniemi},
title = {Identifying differentially methylated sites in samples with varying
tumor purity},
journal = {Bioinform.},
volume = {34},
number = {18},
pages = {3078--3085},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty310},
doi = {10.1093/BIOINFORMATICS/BTY310},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HakkinenAFZKLCG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cmpb/IcayLH18,
author = {Katherine Icay and
Chengyu Liu and
Sampsa Hautaniemi},
title = {Dynamic visualization of multi-level molecular data: The Director
package in {R}},
journal = {Comput. Methods Programs Biomed.},
volume = {153},
pages = {129--136},
year = {2018},
url = {https://doi.org/10.1016/j.cmpb.2017.10.013},
doi = {10.1016/J.CMPB.2017.10.013},
timestamp = {Thu, 20 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/cmpb/IcayLH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuLH18,
author = {Chengyu Liu and
Rainer Lehtonen and
Sampsa Hautaniemi},
title = {PerPAS: Topology-Based Single Sample Pathway Analysis Method},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {15},
number = {3},
pages = {1022--1027},
year = {2018},
url = {https://doi.org/10.1109/TCBB.2017.2679745},
doi = {10.1109/TCBB.2017.2679745},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiuLH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/IcayCCRLH16,
author = {Katherine Icay and
Ping Chen and
Alejandra Cervera and
Ville Rantanen and
Rainer Lehtonen and
Sampsa Hautaniemi},
title = {SePIA: {RNA} and small {RNA} sequence processing, integration, and
analysis},
journal = {BioData Min.},
volume = {9},
pages = {20},
year = {2016},
url = {https://doi.org/10.1186/s13040-016-0099-z},
doi = {10.1186/S13040-016-0099-Z},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/IcayCCRLH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/LouhimoLBKLH16,
author = {Riku Louhimo and
Marko Laakso and
Denis Belitskin and
Juha Klefstr{\"{o}}m and
Rainer Lehtonen and
Sampsa Hautaniemi},
title = {Data integration to prioritize drugs using genomics and curated data},
journal = {BioData Min.},
volume = {9},
pages = {21},
year = {2016},
url = {https://doi.org/10.1186/s13040-016-0097-1},
doi = {10.1186/S13040-016-0097-1},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/LouhimoLBKLH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/AlkodsiLH15,
author = {Amjad Alkodsi and
Riku Louhimo and
Sampsa Hautaniemi},
title = {Comparative analysis of methods for identifying somatic copy number
alterations from deep sequencing data},
journal = {Briefings Bioinform.},
volume = {16},
number = {2},
pages = {242--254},
year = {2015},
url = {https://doi.org/10.1093/bib/bbu004},
doi = {10.1093/BIB/BBU004},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/AlkodsiLH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LouhimoLHLMRMBLNH13,
author = {Riku Louhimo and
Marko Laakso and
Tuomas Heikkinen and
Susanna Laitinen and
Pekka Manninen and
Vladimir Rogojin and
Minna Miettinen and
Carl Blomqvist and
Jianjun Liu and
Heli Nevanlinna and
Sampsa Hautaniemi},
title = {Identification of genetic markers with synergistic survival effect
in cancer},
journal = {{BMC} Syst. Biol.},
volume = {7},
number = {{S-1}},
pages = {S2},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S1-S2},
doi = {10.1186/1752-0509-7-S1-S2},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LouhimoLHLMRMBLNH13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/OvaskaMGCCLRSSH13,
author = {Kristian Ovaska and
Filomena Matarese and
Korbinian Grote and
Iryna Charapitsa and
Alejandra Cervera and
Chengyu Liu and
George Reid and
Martin Seifert and
Hendrik G. Stunnenberg and
Sampsa Hautaniemi},
title = {Integrative Analysis of Deep Sequencing Data Identifies Estrogen Receptor
Early Response Genes and Links \emph{ATAD3B} to Poor Survival in Breast
Cancer},
journal = {PLoS Comput. Biol.},
volume = {9},
number = {6},
year = {2013},
url = {https://doi.org/10.1371/journal.pcbi.1003100},
doi = {10.1371/JOURNAL.PCBI.1003100},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/OvaskaMGCCLRSSH13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/OvaskaLSJH13,
author = {Kristian Ovaska and
Lauri Lyly and
Biswajyoti Sahu and
Olli A. J{\"{a}}nne and
Sampsa Hautaniemi},
title = {Genomic Region Operation Kit for Flexible Processing of Deep Sequencing
Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {10},
number = {1},
pages = {200--206},
year = {2013},
url = {https://doi.org/10.1109/TCBB.2012.170},
doi = {10.1109/TCBB.2012.170},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/OvaskaLSJH13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ieeehpcs/HautaniemiL13,
author = {Sampsa Hautaniemi and
Marko Laakso},
title = {High-performance computing in biomedicine},
booktitle = {International Conference on High Performance Computing {\&} Simulation,
{HPCS} 2013, Helsinki, Finland, July 1-5, 2013},
pages = {233},
publisher = {{IEEE}},
year = {2013},
url = {https://doi.org/10.1109/HPCSim.2013.6641420},
doi = {10.1109/HPCSIM.2013.6641420},
timestamp = {Wed, 16 Oct 2019 14:14:54 +0200},
biburl = {https://dblp.org/rec/conf/ieeehpcs/HautaniemiL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CowleyPKWPGBHW12,
author = {Mark J. Cowley and
Mark Pinese and
Karin S. Kassahn and
Nic Waddell and
John V. Pearson and
Sean M. Grimmond and
Andrew V. Biankin and
Sampsa Hautaniemi and
Jianmin Wu},
title = {{PINA} v2.0: mining interactome modules},
journal = {Nucleic Acids Res.},
volume = {40},
number = {Database-Issue},
pages = {862--865},
year = {2012},
url = {https://doi.org/10.1093/nar/gkr967},
doi = {10.1093/NAR/GKR967},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/CowleyPKWPGBHW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LouhimoH11,
author = {Riku Louhimo and
Sampsa Hautaniemi},
title = {CNAmet: an {R} package for integrating copy number, methylation and
expression data},
journal = {Bioinform.},
volume = {27},
number = {6},
pages = {887--888},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr019},
doi = {10.1093/BIOINFORMATICS/BTR019},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LouhimoH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LaaksoH10,
author = {Marko Laakso and
Sampsa Hautaniemi},
title = {Integrative platform to translate gene sets to networks},
journal = {Bioinform.},
volume = {26},
number = {14},
pages = {1802--1803},
year = {2010},
url = {https://doi.org/10.1093/bioinformatics/btq277},
doi = {10.1093/BIOINFORMATICS/BTQ277},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LaaksoH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AutioKSKHA09,
author = {Reija Autio and
Sami Kilpinen and
Matti Saarela and
Olli{-}P. Kallioniemi and
Sampsa Hautaniemi and
Jaakko Astola},
title = {Comparison of Affymetrix data normalization methods using 6, 926 experiments
across five array generations},
journal = {{BMC} Bioinform.},
volume = {10},
number = {{S-1}},
year = {2009},
url = {https://doi.org/10.1186/1471-2105-10-S1-S24},
doi = {10.1186/1471-2105-10-S1-S24},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/AutioKSKHA09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AutioSJHA09,
author = {Reija Autio and
Matti Saarela and
Anna{-}Kaarina J{\"{a}}rvinen and
Sampsa Hautaniemi and
Jaakko Astola},
title = {Advanced analysis and visualization of gene copy number and expression
data},
journal = {{BMC} Bioinform.},
volume = {10},
number = {{S-1}},
year = {2009},
url = {https://doi.org/10.1186/1471-2105-10-S1-S70},
doi = {10.1186/1471-2105-10-S1-S70},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AutioSJHA09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/ox/09/MonniH09,
author = {Outi Monni and
Sampsa Hautaniemi},
editor = {Carsten Wiuf and
Claus L. Andersen},
title = {Bioinformatics of gene expression and copy number data integration},
booktitle = {Statistics and Informatics in Molecular Cancer Research},
pages = {78--101},
publisher = {Oxford University Press},
year = {2009},
timestamp = {Sat, 26 Nov 2022 12:57:12 +0100},
biburl = {https://dblp.org/rec/books/ox/09/MonniH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/OvaskaLH08,
author = {Kristian Ovaska and
Marko Laakso and
Sampsa Hautaniemi},
title = {Fast Gene Ontology based clustering for microarray experiments},
journal = {BioData Min.},
volume = {1},
year = {2008},
url = {https://doi.org/10.1186/1756-0381-1-11},
doi = {10.1186/1756-0381-1-11},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/OvaskaLH08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LaaksoTKLAH07,
author = {Marko Laakso and
Sari Tuupanen and
Auli Karhu and
Rainer Lehtonen and
Lauri A. Aaltonen and
Sampsa Hautaniemi},
title = {Computational identification of candidate loci for recessively inherited
mutation using high-throughput {SNP} arrays},
journal = {Bioinform.},
volume = {23},
number = {15},
pages = {1952--1961},
year = {2007},
url = {https://doi.org/10.1093/bioinformatics/btm263},
doi = {10.1093/BIOINFORMATICS/BTM263},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LaaksoTKLAH07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KharaitHWILW07,
author = {Sourabh Kharait and
Sampsa Hautaniemi and
Shan Wu and
Akihiro Iwabu and
Douglas A. Lauffenburger and
Alan Wells},
title = {Decision tree modeling predicts effects of inhibiting contractility
signaling on cell motility},
journal = {{BMC} Syst. Biol.},
volume = {1},
pages = {9},
year = {2007},
url = {https://doi.org/10.1186/1752-0509-1-9},
doi = {10.1186/1752-0509-1-9},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KharaitHWILW07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/sigpro/LahdesmakiHSY06,
author = {Harri L{\"{a}}hdesm{\"{a}}ki and
Sampsa Hautaniemi and
Ilya Shmulevich and
Olli Yli{-}Harja},
title = {Relationships between probabilistic Boolean networks and dynamic Bayesian
networks as models of gene regulatory networks},
journal = {Signal Process.},
volume = {86},
number = {4},
pages = {814--834},
year = {2006},
url = {https://doi.org/10.1016/j.sigpro.2005.06.008},
doi = {10.1016/J.SIGPRO.2005.06.008},
timestamp = {Sat, 22 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/sigpro/LahdesmakiHSY06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BergerHMA06,
author = {John A. Berger and
Sampsa Hautaniemi and
Sanjit K. Mitra and
Jaakko Astola},
title = {Jointly Analyzing Gene Expression and Copy Number Data in Breast Cancer
Using Data Reduction Models},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {3},
number = {1},
pages = {2--16},
year = {2006},
url = {https://doi.org/10.1109/TCBB.2006.10},
doi = {10.1109/TCBB.2006.10},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/BergerHMA06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HautaniemiKIWL05,
author = {Sampsa Hautaniemi and
Sourabh Kharait and
Akihiro Iwabu and
Alan Wells and
Douglas A. Lauffenburger},
title = {Modeling of signal-response cascades using decision tree analysis},
journal = {Bioinform.},
volume = {21},
number = {9},
pages = {2027--2035},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti278},
doi = {10.1093/BIOINFORMATICS/BTI278},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HautaniemiKIWL05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BergerHJEMA04,
author = {John A. Berger and
Sampsa Hautaniemi and
Anna{-}Kaarina J{\"{a}}rvinen and
Henrik Edgren and
Sanjit K. Mitra and
Jaakko Astola},
title = {Optimized {LOWESS} normalization parameter selection for {DNA} microarray
data},
journal = {{BMC} Bioinform.},
volume = {5},
pages = {194},
year = {2004},
url = {https://doi.org/10.1186/1471-2105-5-194},
doi = {10.1186/1471-2105-5-194},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BergerHJEMA04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jfi/HautaniemiRKAEY04,
author = {Sampsa Hautaniemi and
Markus Ringn{\'{e}}r and
P{\"{a}}ivikki Kauraniemi and
Reija Autio and
Henrik Edgren and
Olli Yli{-}Harja and
Jaakko Astola and
Anne Kallioniemi and
Olli{-}Pekka Kallioniemi},
title = {A strategy for identifying putative causes of gene expression variation
in human cancers},
journal = {J. Frankl. Inst.},
volume = {341},
number = {1-2},
pages = {77--88},
year = {2004},
url = {https://doi.org/10.1016/j.jfranklin.2003.12.005},
doi = {10.1016/J.JFRANKLIN.2003.12.005},
timestamp = {Mon, 24 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jfi/HautaniemiRKAEY04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/csb/BergerHM04,
author = {John A. Berger and
Sampsa Hautaniemi and
Sanjit K. Mitra},
title = {Comparative Analysis of Gene Expression and {DNA} Copy Number Data
for Pancreatic and Breast Cancers Using an Orthogonal Decomposition},
booktitle = {3rd International {IEEE} Computer Society Computational Systems Bioinformatics
Conference, {CSB} 2004, Stanford, CA, USA, August 16-19, 2004},
pages = {584--585},
publisher = {{IEEE} Computer Society},
year = {2004},
url = {https://doi.org/10.1109/CSB.2004.1332506},
doi = {10.1109/CSB.2004.1332506},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/csb/BergerHM04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AutioHKYAWK03,
author = {Reija Autio and
Sampsa Hautaniemi and
P{\"{a}}ivikki Kauraniemi and
Olli Yli{-}Harja and
Jaakko Astola and
Maija Wolf and
Anne Kallioniemi},
title = {CGH-Plotter: {MATLAB} toolbox for CGH-data analysis},
journal = {Bioinform.},
volume = {19},
number = {13},
pages = {1714--1715},
year = {2003},
url = {https://doi.org/10.1093/bioinformatics/btg230},
doi = {10.1093/BIOINFORMATICS/BTG230},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AutioHKYAWK03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HautaniemiEVWJYAKM03,
author = {Sampsa Hautaniemi and
Henrik Edgren and
Petri Vesanen and
Maija Wolf and
Anna{-}Kaarina J{\"{a}}rvinen and
Olli Yli{-}Harja and
Jaakko Astola and
Olli{-}P. Kallioniemi and
Outi Monni},
title = {A novel strategy for microarray quality control using Bayesian networks},
journal = {Bioinform.},
volume = {19},
number = {16},
pages = {2031--2038},
year = {2003},
url = {https://doi.org/10.1093/bioinformatics/btg275},
doi = {10.1093/BIOINFORMATICS/BTG275},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HautaniemiEVWJYAKM03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ml/HautaniemiYAKKWRMK03,
author = {Sampsa Hautaniemi and
Olli Yli{-}Harja and
Jaakko Astola and
P{\"{a}}ivikki Kauraniemi and
Anne Kallioniemi and
Maija Wolf and
Jimmy Ruiz and
Spyro Mousses and
Olli{-}P. Kallioniemi},
title = {Analysis and Visualization of Gene Expression Microarray Data in Human
Cancer Using Self-Organizing Maps},
journal = {Mach. Learn.},
volume = {52},
number = {1-2},
pages = {45--66},
year = {2003},
url = {https://doi.org/10.1023/A:1023941307670},
doi = {10.1023/A:1023941307670},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ml/HautaniemiYAKKWRMK03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nnsp/BergerHEMMYA03,
author = {John A. Berger and
Sampsa Hautaniemi and
Henrik Edgren and
Outi Monni and
Sanjit K. Mitra and
Olli Yli{-}Harja and
Jaakko Astola},
title = {Identifying underlying factors in breast cancer using independent
component analysis},
booktitle = {{NNSP} 2003, {IEEE} {XIII} Workshop on Neural Networks for Signal
Processing, Toulouse, France, September 17-19, 2003},
pages = {81--90},
publisher = {{IEEE}},
year = {2003},
url = {https://doi.org/10.1109/NNSP.2003.1318006},
doi = {10.1109/NNSP.2003.1318006},
timestamp = {Wed, 16 Oct 2019 14:14:54 +0200},
biburl = {https://dblp.org/rec/conf/nnsp/BergerHEMMYA03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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