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ORCIDBibTeX records: Tim J. P. Hubbard
@article{DBLP:journals/nar/FrankishSDJLMSWABBBBBBRCCDDDFGGGHHH23,
author = {Adam Frankish and
Silvia Carbonell Sala and
Mark Diekhans and
Irwin Jungreis and
Jane E. Loveland and
Jonathan M. Mudge and
Cristina Sisu and
James C. Wright and
Carme Arnan and
If Barnes and
Abhimanyu Banerjee and
Ruth Bennett and
Andrew E. Berry and
Alexandra Bignell and
Carles Boix and
Ferriol Calvet Riera and
Daniel Cerd{\'{a}}n{-}V{\'{e}}lez and
Fiona Cunningham and
Claire Davidson and
Sarah M. Donaldson and
Cagatay Dursun and
Reham Fatima and
Stefano Giorgetti and
Carlos Garc{\'{\i}}a{-}Gir{\'{o}}n and
Jose M. Gonzalez and
Matthew Hardy and
Peter W. Harrison and
Thibaut Hourlier and
Zoe Hollis and
Toby Hunt and
Benjamin James and
Yunzhe Jiang and
Rory Johnson and
Mike P. Kay and
Julien Lagarde and
Fergal J. Martin and
Laura Mart{\'{\i}}nez G{\'{o}}mez and
Surag Nair and
Pengyu Ni and
Fernando Pozo and
Vivek Ramalingam and
Magali Ruffier and
Bianca M. Schmitt and
Jacob M. Schreiber and
Emily Steed and
Marie{-}Marthe Suner and
Dulika Sumathipala and
Irina Sycheva and
Barbara Uszczynska{-}Ratajczak and
Elizabeth Wass and
Yucheng T. Yang and
Andrew D. Yates and
Zahoor Zafrulla and
Jyoti Choudhary and
Mark Gerstein and
Roderic Guig{\'{o}} and
Tim J. P. Hubbard and
Manolis Kellis and
Anshul Kundaje and
Benedict Paten and
Michael L. Tress and
Paul Flicek},
title = {{GENCODE:} reference annotation for the human and mouse genomes in
2023},
journal = {Nucleic Acids Res.},
volume = {51},
number = {{D1}},
pages = {942--949},
year = {2023},
url = {https://doi.org/10.1093/nar/gkac1071},
doi = {10.1093/NAR/GKAC1071},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/FrankishSDJLMSWABBBBBBRCCDDDFGGGHHH23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/FrankishDJLLMSW21,
author = {Adam Frankish and
Mark Diekhans and
Irwin Jungreis and
Julien Lagarde and
Jane E. Loveland and
Jonathan M. Mudge and
Cristina Sisu and
James C. Wright and
Joel Armstrong and
If Barnes and
Andrew E. Berry and
Alexandra Bignell and
Carles Boix and
Silvia Carbonell Sala and
Fiona Cunningham and
Tom{\'{a}}s Di Domenico and
Sarah M. Donaldson and
Ian T. Fiddes and
Carlos Garc{\'{\i}}a{-}Gir{\'{o}}n and
Jose M. Gonzalez and
Tiago Grego and
Matthew Hardy and
Thibaut Hourlier and
Kevin L. Howe and
Toby Hunt and
Osagie G. Izuogu and
Rory Johnson and
Fergal J. Martin and
Laura Mart{\'{\i}}nez and
Shamika Mohanan and
Paul Muir and
Fabio C. P. Navarro and
Anne Parker and
Baikang Pei and
Fernando Pozo and
Ferriol Calvet Riera and
Magali Ruffier and
Bianca M. Schmitt and
Eloise Stapleton and
Marie{-}Marthe Suner and
Irina Sycheva and
Barbara Uszczynska{-}Ratajczak and
Maxim Y. Wolf and
Jinrui Xu and
Yucheng T. Yang and
Andrew D. Yates and
Daniel R. Zerbino and
Yan Zhang and
Jyoti Choudhary and
Mark Gerstein and
Roderic Guig{\'{o}} and
Tim J. P. Hubbard and
Manolis Kellis and
Benedict Paten and
Michael L. Tress and
Paul Flicek},
title = {{GENCODE} 2021},
journal = {Nucleic Acids Res.},
volume = {49},
number = {Database-Issue},
pages = {D916--D923},
year = {2021},
url = {https://doi.org/10.1093/nar/gkaa1087},
doi = {10.1093/NAR/GKAA1087},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/FrankishDJLLMSW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/FrankishDFJJLMS19,
author = {Adam Frankish and
Mark Diekhans and
Anne{-}Maud Ferreira and
Rory Johnson and
Irwin Jungreis and
Jane E. Loveland and
Jonathan M. Mudge and
Cristina Sisu and
James C. Wright and
Joel Armstrong and
If Barnes and
Andrew E. Berry and
Alexandra Bignell and
Silvia Carbonell Sala and
Jacqueline Chrast and
Fiona Cunningham and
Tom{\'{a}}s Di Domenico and
Sarah M. Donaldson and
Ian T. Fiddes and
Carlos Garc{\'{\i}}a{-}Gir{\'{o}}n and
Jose M. Gonzalez and
Tiago Grego and
Matthew Hardy and
Thibaut Hourlier and
Toby Hunt and
Osagie G. Izuogu and
Julien Lagarde and
Fergal J. Martin and
Laura Mart{\'{\i}}nez and
Shamika Mohanan and
Paul Muir and
Fabio C. P. Navarro and
Anne Parker and
Baikang Pei and
Fernando Pozo and
Magali Ruffier and
Bianca M. Schmitt and
Eloise Stapleton and
Marie{-}Marthe Suner and
Irina Sycheva and
Barbara Uszczynska{-}Ratajczak and
Jinrui Xu and
Andrew D. Yates and
Daniel R. Zerbino and
Yan Zhang and
Bronwen L. Aken and
Jyoti Choudhary and
Mark Gerstein and
Roderic Guig{\'{o}} and
Tim J. P. Hubbard and
Manolis Kellis and
Benedict Paten and
Alexandre Reymond and
Michael L. Tress and
Paul Flicek},
title = {{GENCODE} reference annotation for the human and mouse genomes},
journal = {Nucleic Acids Res.},
volume = {47},
number = {Database-Issue},
pages = {D766--D773},
year = {2019},
url = {https://doi.org/10.1093/nar/gky955},
doi = {10.1093/NAR/GKY955},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/FrankishDFJJLMS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/WuOGBHD17,
author = {Honghan Wu and
Anika Oellrich and
Christine Girges and
Bernard de Bono and
Tim J. P. Hubbard and
Richard J. B. Dobson},
title = {Automated {PDF} highlighting to support faster curation of literature
for Parkinson's and Alzheimer's disease},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax027},
year = {2017},
url = {https://doi.org/10.1093/database/bax027},
doi = {10.1093/DATABASE/BAX027},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/WuOGBHD17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/naacl/GkotsisOHDLVD16,
author = {George Gkotsis and
Anika Oellrich and
Tim J. P. Hubbard and
Richard J. B. Dobson and
Maria Liakata and
Sumithra Velupillai and
Rina Dutta},
editor = {Kristy Hollingshead and
Lyle H. Ungar},
title = {The language of mental health problems in social media},
booktitle = {Proceedings of the 3rd Workshop on Computational Linguistics and Clinical
Psychology: From Linguistic Signal to Clinical Reality, CLPsych@NAACL-HLT
2016, June 16, 2016, San Diego, California, {USA}},
pages = {63--73},
publisher = {The Association for Computational Linguistics},
year = {2016},
url = {https://doi.org/10.18653/v1/w16-0307},
doi = {10.18653/V1/W16-0307},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/naacl/GkotsisOHDLVD16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/odls/KonigOWDHW16,
author = {Matthias K{\"{o}}nig and
Anika Oellrich and
Dagmar Waltemath and
Richard J. B. Dobson and
Tim J. P. Hubbard and
Olaf Wolkenhauer},
editor = {Frank Loebe and
Martin Boeker and
Heinrich Herre and
Ludger Jansen and
Daniel Schober},
title = {Challenges and opportunities for system biology standards and tools
in medical research},
booktitle = {Proceedings of the 7th Workshop on Ontologies and Data in Life Sciences,
{ODLS} 2016, organized by the {GI} Workgroup Ontologies in Biomedicine
and Life Sciences (OBML), Halle (Saale), Germany, September 29-30,
2016},
series = {{CEUR} Workshop Proceedings},
volume = {1692},
pages = {1--6},
publisher = {CEUR-WS.org},
year = {2016},
url = {https://ceur-ws.org/Vol-1692/paperC.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:13 +0100},
biburl = {https://dblp.org/rec/conf/odls/KonigOWDHW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GeihsYWHMMMCHTD15,
author = {Matthias Geihs and
Ying Yan and
Klaudia Walter and
Jie Huang and
Yasin Memari and
Josine L. Min and
Daniel Mead and
Tim J. P. Hubbard and
Nicholas J. Timpson and
Thomas A. Down and
Nicole Soranzo},
title = {An interactive genome browser of association results from the {UK10K}
cohorts project},
journal = {Bioinform.},
volume = {31},
number = {24},
pages = {4029--4031},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv491},
doi = {10.1093/BIOINFORMATICS/BTV491},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GeihsYWHMMMCHTD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/FlicekAB14,
author = {Paul Flicek and
M. Ridwan Amode and
Daniel Barrell and
Kathryn Beal and
Konstantinos Billis and
Simon Brent and
Denise Carvalho{-}Silva and
Peter Clapham and
Guy Coates and
Stephen Fitzgerald and
Laurent Gil and
Carlos Garc{\'{\i}}a{-}Gir{\'{o}}n and
Leo Gordon and
Thibaut Hourlier and
Sarah E. Hunt and
Nathan Johnson and
Thomas Juettemann and
Andreas K{\"{a}}h{\"{a}}ri and
Stephen Keenan and
Eugene Kulesha and
Fergal J. Martin and
Thomas Maurel and
William M. McLaren and
Daniel N. Murphy and
Rishi Nag and
Bert Overduin and
Miguel Pignatelli and
Bethan Pritchard and
Emily Pritchard and
Harpreet Singh Riat and
Magali Ruffier and
Daniel Sheppard and
Kieron R. Taylor and
Anja Thormann and
Stephen J. Trevanion and
Alessandro Vullo and
Steven P. Wilder and
Mark Wilson and
Amonida Zadissa and
Bronwen L. Aken and
Ewan Birney and
Fiona Cunningham and
Jennifer L. Harrow and
Javier Herrero and
Tim J. P. Hubbard and
Rhoda Kinsella and
Matthieu Muffato and
Anne Parker and
Giulietta Spudich and
Andy Yates and
Daniel R. Zerbino and
Stephen M. J. Searle},
title = {Ensembl 2014},
journal = {Nucleic Acids Res.},
volume = {42},
number = {Database-Issue},
pages = {749--755},
year = {2014},
url = {https://doi.org/10.1093/nar/gkt1196},
doi = {10.1093/NAR/GKT1196},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/FlicekAB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/FarrellOH14,
author = {Catherine M. Farrell and
Nuala A. O'Leary and
Rachel A. Harte and
Jane E. Loveland and
Laurens G. Wilming and
Craig Wallin and
Mark Diekhans and
Daniel Barrell and
Stephen M. J. Searle and
Bronwen L. Aken and
Susan M. Hiatt and
Adam Frankish and
Marie{-}Marthe Suner and
Bhanu Rajput and
Charles A. Steward and
Garth R. Brown and
Ruth Bennett and
Michael R. Murphy and
Wendy Wu and
Mike P. Kay and
Jennifer Hart and
Jeena Rajan and
Janet Weber and
Catherine Snow and
Lillian D. Riddick and
Toby Hunt and
David Webb and
Mark Thomas and
Pamela Tamez and
Sanjida H. Rangwala and
Kelly M. McGarvey and
Shashikant Pujar and
Andrei Shkeda and
Jonathan M. Mudge and
Jose M. Gonzalez and
James G. R. Gilbert and
Stephen J. Trevanion and
Robert Baertsch and
Jennifer L. Harrow and
Tim J. P. Hubbard and
James M. Ostell and
David Haussler and
Kim D. Pruitt},
title = {Current status and new features of the Consensus Coding Sequence database},
journal = {Nucleic Acids Res.},
volume = {42},
number = {Database-Issue},
pages = {865--872},
year = {2014},
url = {https://doi.org/10.1093/nar/gkt1059},
doi = {10.1093/NAR/GKT1059},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/FarrellOH14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/FlicekAA13,
author = {Paul Flicek and
Ikhlak Ahmed and
M. Ridwan Amode and
Daniel Barrell and
Kathryn Beal and
Simon Brent and
Denise Carvalho{-}Silva and
Peter Clapham and
Guy Coates and
Susan Fairley and
Stephen Fitzgerald and
Laurent Gil and
Carlos Garc{\'{\i}}a{-}Gir{\'{o}}n and
Leo Gordon and
Thibaut Hourlier and
Sarah E. Hunt and
Thomas Juettemann and
Andreas K{\"{a}}h{\"{a}}ri and
Stephen Keenan and
Monika Komorowska and
Eugene Kulesha and
Ian Longden and
Thomas Maurel and
William M. McLaren and
Matthieu Muffato and
Rishi Nag and
Bert Overduin and
Miguel Pignatelli and
Bethan Pritchard and
Emily Pritchard and
Harpreet Singh Riat and
Graham R. S. Ritchie and
Magali Ruffier and
Michael Schuster and
Daniel Sheppard and
Daniel Sobral and
Kieron R. Taylor and
Anja Thormann and
Stephen J. Trevanion and
Simon White and
Steven P. Wilder and
Bronwen L. Aken and
Ewan Birney and
Fiona Cunningham and
Ian Dunham and
Jennifer L. Harrow and
Javier Herrero and
Tim J. P. Hubbard and
Nathan Johnson and
Rhoda Kinsella and
Anne Parker and
Giulietta Spudich and
Andy Yates and
Amonida Zadissa and
Stephen M. J. Searle},
title = {Ensembl 2013},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {48--55},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1236},
doi = {10.1093/NAR/GKS1236},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/FlicekAA13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/FlicekAB12,
author = {Paul Flicek and
M. Ridwan Amode and
Daniel Barrell and
Kathryn Beal and
Simon Brent and
Denise Carvalho{-}Silva and
Peter Clapham and
Guy Coates and
Susan Fairley and
Stephen Fitzgerald and
Laurent Gil and
Leo Gordon and
Maurice Hendrix and
Thibaut Hourlier and
Nathan Johnson and
Andreas K{\"{a}}h{\"{a}}ri and
Damian Keefe and
Stephen Keenan and
Rhoda Kinsella and
Monika Komorowska and
Gautier Koscielny and
Eugene Kulesha and
Pontus Larsson and
Ian Longden and
William M. McLaren and
Matthieu Muffato and
Bert Overduin and
Miguel Pignatelli and
Bethan Pritchard and
Harpreet Singh Riat and
Graham R. S. Ritchie and
Magali Ruffier and
Michael Schuster and
Daniel Sobral and
Y. Amy Tang and
Kieron R. Taylor and
Stephen J. Trevanion and
Jana Vandrovcova and
Simon White and
Mark Wilson and
Steven P. Wilder and
Bronwen L. Aken and
Ewan Birney and
Fiona Cunningham and
Ian Dunham and
Richard Durbin and
Xos{\'{e}} M. Fern{\'{a}}ndez{-}Su{\'{a}}rez and
Jennifer L. Harrow and
Javier Herrero and
Tim J. P. Hubbard and
Anne Parker and
Glenn Proctor and
Giulietta Spudich and
Jan Vogel and
Andy Yates and
Amonida Zadissa and
Stephen M. J. Searle},
title = {Ensembl 2012},
journal = {Nucleic Acids Res.},
volume = {40},
number = {Database-Issue},
pages = {84--90},
year = {2012},
url = {https://doi.org/10.1093/nar/gkr991},
doi = {10.1093/NAR/GKR991},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/FlicekAB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DownPH11,
author = {Thomas A. Down and
Matias Piipari and
Tim J. P. Hubbard},
title = {Dalliance: interactive genome viewing on the web},
journal = {Bioinform.},
volume = {27},
number = {6},
pages = {889--890},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr020},
doi = {10.1093/BIOINFORMATICS/BTR020},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DownPH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/FlicekAB11,
author = {Paul Flicek and
M. Ridwan Amode and
Daniel Barrell and
Kathryn Beal and
Simon Brent and
Yuan Chen and
Peter Clapham and
Guy Coates and
Susan Fairley and
Stephen Fitzgerald and
Leo Gordon and
Maurice Hendrix and
Thibaut Hourlier and
Nathan Johnson and
Andreas K{\"{a}}h{\"{a}}ri and
Damian Keefe and
Stephen Keenan and
Rhoda Kinsella and
Felix Kokocinski and
Eugene Kulesha and
Pontus Larsson and
Ian Longden and
William M. McLaren and
Bert Overduin and
Bethan Pritchard and
Harpreet Singh Riat and
Daniel Rios and
Graham R. S. Ritchie and
Magali Ruffier and
Michael Schuster and
Daniel Sobral and
Giulietta Spudich and
Y. Amy Tang and
Stephen J. Trevanion and
Jana Vandrovcova and
Albert J. Vilella and
Simon White and
Steven P. Wilder and
Amonida Zadissa and
Jorge Zamora and
Bronwen L. Aken and
Ewan Birney and
Fiona Cunningham and
Ian Dunham and
Richard Durbin and
Xos{\'{e}} M. Fern{\'{a}}ndez{-}Su{\'{a}}rez and
Javier Herrero and
Tim J. P. Hubbard and
Anne Parker and
Glenn Proctor and
Jan Vogel and
Stephen M. J. Searle},
title = {Ensembl 2011},
journal = {Nucleic Acids Res.},
volume = {39},
number = {Database-Issue},
pages = {800--806},
year = {2011},
url = {https://doi.org/10.1093/nar/gkq1064},
doi = {10.1093/NAR/GKQ1064},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/FlicekAB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PiipariDSEH10,
author = {Matias Piipari and
Thomas A. Down and
Harpreet Kaur Saini and
Anton J. Enright and
Tim J. P. Hubbard},
title = {iMotifs: an integrated sequence motif visualization and analysis environment},
journal = {Bioinform.},
volume = {26},
number = {6},
pages = {843--844},
year = {2010},
url = {https://doi.org/10.1093/bioinformatics/btq026},
doi = {10.1093/BIOINFORMATICS/BTQ026},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PiipariDSEH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PiipariDH10,
author = {Matias Piipari and
Thomas A. Down and
Tim J. P. Hubbard},
title = {Metamotifs - a generative model for building families of nucleotide
position weight matrices},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {348},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-348},
doi = {10.1186/1471-2105-11-348},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PiipariDH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/FlicekAB10,
author = {Paul Flicek and
Bronwen L. Aken and
Beno{\^{\i}}t Ballester and
Kathryn Beal and
Eugene Bragin and
Simon Brent and
Yuan Chen and
Peter Clapham and
Guy Coates and
Susan Fairley and
Stephen Fitzgerald and
Julio Fernandez{-}Banet and
Leo Gordon and
Stefan Gr{\"{a}}f and
Syed Haider and
Martin Hammond and
Kerstin Howe and
Andrew M. Jenkinson and
Nathan Johnson and
Andreas K{\"{a}}h{\"{a}}ri and
Damian Keefe and
Stephen Keenan and
Rhoda Kinsella and
Felix Kokocinski and
Gautier Koscielny and
Eugene Kulesha and
Daniel Lawson and
Ian Longden and
Tim Massingham and
William M. McLaren and
Karine Megy and
Bert Overduin and
Bethan Pritchard and
Daniel Rios and
Magali Ruffier and
Michael Schuster and
Guy Slater and
Damian Smedley and
Giulietta Spudich and
Y. Amy Tang and
Stephen J. Trevanion and
Albert J. Vilella and
Jan Vogel and
Simon White and
Steven P. Wilder and
Amonida Zadissa and
Ewan Birney and
Fiona Cunningham and
Ian Dunham and
Richard Durbin and
Xos{\'{e}} M. Fern{\'{a}}ndez{-}Su{\'{a}}rez and
Javier Herrero and
Tim J. P. Hubbard and
Anne Parker and
Glenn Proctor and
James A. Smith and
Stephen M. J. Searle},
title = {Ensembl's 10th year},
journal = {Nucleic Acids Res.},
volume = {38},
number = {Database-Issue},
pages = {557--562},
year = {2010},
url = {https://doi.org/10.1093/nar/gkp972},
doi = {10.1093/NAR/GKP972},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/FlicekAB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CochraneABBDFGHHHJJLLLLLMMPRRSHVZB09,
author = {Guy Cochrane and
Ruth Akhtar and
James K. Bonfield and
Lawrence Bower and
Fehmi Demiralp and
Nadeem Faruque and
Richard Gibson and
Gemma Hoad and
Tim J. P. Hubbard and
Christopher I. Hunter and
Mikyung Jang and
Szilveszter Juhos and
Rasko Leinonen and
Steven Leonard and
Quan Lin and
Rodrigo Lopez and
Dariusz Lorenc and
Hamish McWilliam and
Gaurab Mukherjee and
Sheila Plaister and
Rajesh Radhakrishnan and
Stephen Robinson and
Siamak Sobhany and
Petra ten Hoopen and
Robert Vaughan and
Vadim Zalunin and
Ewan Birney},
title = {Petabyte-scale innovations at the European Nucleotide Archive},
journal = {Nucleic Acids Res.},
volume = {37},
number = {Database-Issue},
pages = {19--25},
year = {2009},
url = {https://doi.org/10.1093/nar/gkn765},
doi = {10.1093/NAR/GKN765},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/CochraneABBDFGHHHJJLLLLLMMPRRSHVZB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HubbardAA09,
author = {Tim J. P. Hubbard and
Bronwen L. Aken and
Sarah C. Ayling and
Beno{\^{\i}}t Ballester and
Kathryn Beal and
Eugene Bragin and
Simon Brent and
Yuan Chen and
Peter Clapham and
Laura Clarke and
Guy Coates and
Susan Fairley and
Stephen Fitzgerald and
Julio Fernandez{-}Banet and
Leo Gordon and
Stefan Gr{\"{a}}f and
Syed Haider and
Martin Hammond and
Richard C. G. Holland and
Kevin L. Howe and
Andrew M. Jenkinson and
Nathan Johnson and
Andreas K{\"{a}}h{\"{a}}ri and
Damian Keefe and
Stephen Keenan and
Rhoda Kinsella and
Felix Kokocinski and
Eugene Kulesha and
Daniel Lawson and
Ian Longden and
Karine Megy and
Patrick Meidl and
Bert Overduin and
Anne Parker and
Bethan Pritchard and
Daniel Rios and
Michael Schuster and
Guy Slater and
Damian Smedley and
William Spooner and
Giulietta Spudich and
Stephen J. Trevanion and
Albert J. Vilella and
Jan Vogel and
Simon White and
Steven P. Wilder and
Arek Zadissa and
Ewan Birney and
Fiona Cunningham and
Val Curwen and
Richard Durbin and
Xos{\'{e}} M. Fern{\'{a}}ndez{-}Su{\'{a}}rez and
Javier Herrero and
Arek Kasprzyk and
Glenn Proctor and
James A. Smith and
Stephen M. J. Searle and
Paul Flicek},
title = {Ensembl 2009},
journal = {Nucleic Acids Res.},
volume = {37},
number = {Database-Issue},
pages = {690--697},
year = {2009},
url = {https://doi.org/10.1093/nar/gkn828},
doi = {10.1093/NAR/GKN828},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/HubbardAA09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ReevesEMOMHOJPHHT08,
author = {Gabrielle A. Reeves and
Karen Eilbeck and
Michele Magrane and
Claire O'Donovan and
Luisa Montecchi{-}Palazzi and
Midori A. Harris and
Sandra E. Orchard and
Rafael C. Jim{\'{e}}nez and
Andreas Prlic and
Tim J. P. Hubbard and
Henning Hermjakob and
Janet M. Thornton},
title = {The Protein Feature Ontology: a tool for the unification of protein
feature annotations},
journal = {Bioinform.},
volume = {24},
number = {23},
pages = {2767--2772},
year = {2008},
url = {https://doi.org/10.1093/bioinformatics/btn528},
doi = {10.1093/BIOINFORMATICS/BTN528},
timestamp = {Thu, 25 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ReevesEMOMHOJPHHT08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DogruelDH08,
author = {Mutlu Dogruel and
Thomas A. Down and
Tim J. P. Hubbard},
title = {NestedMICA as an ab initio protein motif discovery tool},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-19},
doi = {10.1186/1471-2105-9-19},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DogruelDH08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JenkinsonABBDFHHJJKKMRP08,
author = {Andrew M. Jenkinson and
Mario Albrecht and
Ewan Birney and
Hagen Blankenburg and
Thomas A. Down and
Robert D. Finn and
Henning Hermjakob and
Tim J. P. Hubbard and
Rafael C. Jim{\'{e}}nez and
Philip Jones and
Andreas K{\"{a}}h{\"{a}}ri and
Eugene Kulesha and
Jos{\'{e}} R. Mac{\'{\i}}as and
Gabrielle A. Reeves and
Andreas Prlic},
title = {Integrating biological data - the Distributed Annotation System},
journal = {{BMC} Bioinform.},
volume = {9},
number = {{S-8}},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-S8-S3},
doi = {10.1186/1471-2105-9-S8-S3},
timestamp = {Thu, 25 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/JenkinsonABBDFHHJJKKMRP08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CochraneAAABBBBBBCCDEFHJKLLLLLLMMNPRSVWZAHB08,
author = {Guy Cochrane and
Ruth Akhtar and
Philippe Aldebert and
Nicola Althorpe and
Alastair Baldwin and
Kirsty Bates and
Sumit Bhattacharyya and
James K. Bonfield and
Lawrence Bower and
Paul Browne and
Matias Castro and
Tony Cox and
Fehmi Demiralp and
Ruth Y. Eberhardt and
Nadeem Faruque and
Gemma Hoad and
Mikyung Jang and
Tamara Kulikova and
Alberto Labarga and
Rasko Leinonen and
Steven Leonard and
Quan Lin and
Rodrigo Lopez and
Dariusz Lorenc and
Hamish McWilliam and
Gaurab Mukherjee and
Francesco Nardone and
Sheila Plaister and
Stephen Robinson and
Siamak Sobhany and
Robert Vaughan and
Dan Wu and
Weimin Zhu and
Rolf Apweiler and
Tim J. P. Hubbard and
Ewan Birney},
title = {Priorities for nucleotide trace, sequence and annotation data capture
at the Ensembl Trace Archive and the {EMBL} Nucleotide Sequence Database},
journal = {Nucleic Acids Res.},
volume = {36},
number = {Database-Issue},
pages = {5--12},
year = {2008},
url = {https://doi.org/10.1093/nar/gkm1018},
doi = {10.1093/NAR/GKM1018},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/CochraneAAABBBBBBCCDEFHJKLLLLLLMMNPRSVWZAHB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/AndreevaHCBHCM08,
author = {Antonina Andreeva and
Dave Howorth and
John{-}Marc Chandonia and
Steven E. Brenner and
Tim J. P. Hubbard and
Cyrus Chothia and
Alexey G. Murzin},
title = {Data growth and its impact on the {SCOP} database: new developments},
journal = {Nucleic Acids Res.},
volume = {36},
number = {Database-Issue},
pages = {419--425},
year = {2008},
url = {https://doi.org/10.1093/nar/gkm993},
doi = {10.1093/NAR/GKM993},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/AndreevaHCBHCM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/FlicekAB08,
author = {Paul Flicek and
Bronwen L. Aken and
Kathryn Beal and
Beno{\^{\i}}t Ballester and
Mario C{\'{a}}ccamo and
Yuan Chen and
Laura Clarke and
Guy Coates and
Fiona Cunningham and
Tim Cutts and
Thomas A. Down and
S. C. Dyer and
T. Eyre and
Stephen Fitzgerald and
Julio Fernandez{-}Banet and
Stefan Gr{\"{a}}f and
Syed Haider and
Martin Hammond and
Richard C. G. Holland and
Kevin L. Howe and
Kerstin Howe and
Nathan Johnson and
Andrew M. Jenkinson and
Andreas K{\"{a}}h{\"{a}}ri and
Damian Keefe and
Felix Kokocinski and
Eugene Kulesha and
Daniel Lawson and
Ian Longden and
Karine Megy and
Patrick Meidl and
Bert Overduin and
Anne Parker and
Bethan Pritchard and
Andreas Prlic and
S. Rice and
Daniel Rios and
Michael Schuster and
Ian Sealy and
Guy Slater and
Damian Smedley and
Giulietta Spudich and
Stephen J. Trevanion and
Albert J. Vilella and
Jan Vogel and
Simon White and
M. Wood and
Ewan Birney and
Tony Cox and
Val Curwen and
Richard Durbin and
Xos{\'{e}} M. Fern{\'{a}}ndez{-}Su{\'{a}}rez and
Javier Herrero and
Tim J. P. Hubbard and
Arek Kasprzyk and
Glenn Proctor and
James A. Smith and
Abel Ureta{-}Vidal and
Stephen M. J. Searle},
title = {Ensembl 2008},
journal = {Nucleic Acids Res.},
volume = {36},
number = {Database-Issue},
pages = {707--714},
year = {2008},
url = {https://doi.org/10.1093/nar/gkm988},
doi = {10.1093/NAR/GKM988},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/FlicekAB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WilmingGHTHH08,
author = {Laurens G. Wilming and
James G. R. Gilbert and
Kerstin Howe and
Stephen J. Trevanion and
Tim J. P. Hubbard and
Jennifer L. Harrow},
title = {The vertebrate genome annotation (Vega) database},
journal = {Nucleic Acids Res.},
volume = {36},
number = {Database-Issue},
pages = {753--760},
year = {2008},
url = {https://doi.org/10.1093/nar/gkm987},
doi = {10.1093/NAR/GKM987},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WilmingGHTHH08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PrlicDKFKH07,
author = {Andreas Prlic and
Thomas A. Down and
Eugene Kulesha and
Robert D. Finn and
Andreas K{\"{a}}h{\"{a}}ri and
Tim J. P. Hubbard},
title = {Integrating sequence and structural biology with {DAS}},
journal = {{BMC} Bioinform.},
volume = {8},
year = {2007},
url = {https://doi.org/10.1186/1471-2105-8-333},
doi = {10.1186/1471-2105-8-333},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PrlicDKFKH07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/AndreevaPHM07,
author = {Antonina Andreeva and
Andreas Prlic and
Tim J. P. Hubbard and
Alexey G. Murzin},
title = {{SISYPHUS} - structural alignments for proteins with non-trivial relationships},
journal = {Nucleic Acids Res.},
volume = {35},
number = {Database-Issue},
pages = {253--259},
year = {2007},
url = {https://doi.org/10.1093/nar/gkl746},
doi = {10.1093/NAR/GKL746},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/AndreevaPHM07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HubbardAB07,
author = {Tim J. P. Hubbard and
Bronwen L. Aken and
Kathryn Beal and
Beno{\^{\i}}t Ballester and
Mario C{\'{a}}ccamo and
Yuan Chen and
Laura Clarke and
Guy Coates and
Fiona Cunningham and
Tim Cutts and
Thomas A. Down and
S. C. Dyer and
Stephen Fitzgerald and
Julio Fernandez{-}Banet and
Stefan Gr{\"{a}}f and
Syed Haider and
Martin Hammond and
Javier Herrero and
Richard C. G. Holland and
Kevin L. Howe and
Kerstin Howe and
Nathan Johnson and
Andreas K{\"{a}}h{\"{a}}ri and
Damian Keefe and
Felix Kokocinski and
Eugene Kulesha and
Daniel Lawson and
Ian Longden and
Craig Melsopp and
Karine Megy and
Patrick Meidl and
Bert Overduin and
Anne Parker and
Andreas Prlic and
S. Rice and
Daniel Rios and
Michael Schuster and
Ian Sealy and
Jessica Severin and
Guy Slater and
Damian Smedley and
Giulietta Spudich and
Stephen J. Trevanion and
Albert J. Vilella and
Jan Vogel and
Simon White and
M. Wood and
Tony Cox and
Val Curwen and
Richard Durbin and
Xos{\'{e}} M. Fern{\'{a}}ndez{-}Su{\'{a}}rez and
Paul Flicek and
Arek Kasprzyk and
Glenn Proctor and
Stephen M. J. Searle and
James A. Smith and
Abel Ureta{-}Vidal and
Ewan Birney},
title = {Ensembl 2007},
journal = {Nucleic Acids Res.},
volume = {35},
number = {Database-Issue},
pages = {610--617},
year = {2007},
url = {https://doi.org/10.1093/nar/gkl996},
doi = {10.1093/NAR/GKL996},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HubbardAB07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/DownBSH07,
author = {Thomas A. Down and
Casey M. Bergman and
Jing Su and
Tim J. P. Hubbard},
title = {Large-Scale Discovery of Promoter Motifs in \emph{Drosophila melanogaster}},
journal = {PLoS Comput. Biol.},
volume = {3},
number = {1},
year = {2007},
url = {https://doi.org/10.1371/journal.pcbi.0030007},
doi = {10.1371/JOURNAL.PCBI.0030007},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/DownBSH07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DownLH06,
author = {Thomas A. Down and
Bernard Leong and
Tim J. P. Hubbard},
title = {A machine learning strategy to identify candidate binding sites in
human protein-coding sequence},
journal = {{BMC} Bioinform.},
volume = {7},
pages = {419},
year = {2006},
url = {https://doi.org/10.1186/1471-2105-7-419},
doi = {10.1186/1471-2105-7-419},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DownLH06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BirneyAC06,
author = {Ewan Birney and
T. Daniel Andrews and
Mario C{\'{a}}ccamo and
Yuan Chen and
Laura Clarke and
Guy Coates and
Tony Cox and
Fiona Cunningham and
Val Curwen and
Tim Cutts and
Thomas A. Down and
Richard Durbin and
Xos{\'{e}} M. Fern{\'{a}}ndez{-}Su{\'{a}}rez and
Paul Flicek and
Stefan Gr{\"{a}}f and
Martin Hammond and
Javier Herrero and
Kevin L. Howe and
Vivek Iyer and
Kerstin Jekosch and
Andreas K{\"{a}}h{\"{a}}ri and
Arek Kasprzyk and
Damian Keefe and
Felix Kokocinski and
Eugene Kulesha and
D. London and
Ian Longden and
Craig Melsopp and
Patrick Meidl and
Bert Overduin and
Anne Parker and
Glenn Proctor and
Andreas Prlic and
Mark Rae and
Daniel Rios and
Seth Redmond and
Michael Schuster and
Ian Sealy and
Stephen M. J. Searle and
Jessica Severin and
Guy Slater and
Damian Smedley and
James A. Smith and
Arne Stabenau and
Jim Stalker and
Stephen J. Trevanion and
Abel Ureta{-}Vidal and
Jan Vogel and
Simon White and
Cara Woodwark and
Tim J. P. Hubbard},
title = {Ensembl 2006},
journal = {Nucleic Acids Res.},
volume = {34},
number = {Database-Issue},
pages = {556--561},
year = {2006},
url = {https://doi.org/10.1093/nar/gkj133},
doi = {10.1093/NAR/GKJ133},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BirneyAC06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dils/PrlicBCDFGJKKPSSH06,
author = {Andreas Prlic and
Ewan Birney and
Tony Cox and
Thomas A. Down and
Robert D. Finn and
Stefan Gr{\"{a}}f and
David K. Jackson and
Andreas K{\"{a}}h{\"{a}}ri and
Eugene Kulesha and
Roger Pettett and
James A. Smith and
Jim Stalker and
Tim J. P. Hubbard},
editor = {Ulf Leser and
Felix Naumann and
Barbara A. Eckman},
title = {The Distributed Annotation System for Integration of Biological Data},
booktitle = {Data Integration in the Life Sciences, Third International Workshop,
{DILS} 2006, Hinxton, UK, July 20-22, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4075},
pages = {195--203},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11799511\_17},
doi = {10.1007/11799511\_17},
timestamp = {Thu, 06 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/dils/PrlicBCDFGJKKPSSH06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HubbardAC05,
author = {Tim J. P. Hubbard and
D. Andrews and
Mario C{\'{a}}ccamo and
Graham Cameron and
Yuan Chen and
Michele E. Clamp and
Laura Clarke and
Guy Coates and
Tony Cox and
Fiona Cunningham and
Val Curwen and
Tim Cutts and
Thomas A. Down and
Richard Durbin and
Xos{\'{e}} M. Fern{\'{a}}ndez{-}Su{\'{a}}rez and
James G. R. Gilbert and
Martin Hammond and
Javier Herrero and
H. Hotz and
Kevin L. Howe and
Vivek Iyer and
Kerstin Jekosch and
Andreas K{\"{a}}h{\"{a}}ri and
Arek Kasprzyk and
Damian Keefe and
Stephen Keenan and
Felix Kokocinski and
D. London and
Ian Longden and
Graham P. McVicker and
Craig Melsopp and
Patrick Meidl and
Simon C. Potter and
Glenn Proctor and
Mark Rae and
Daniel Rios and
Michael Schuster and
Stephen M. J. Searle and
Jessica Severin and
Guy Slater and
Damian Smedley and
James A. Smith and
William Spooner and
Arne Stabenau and
Jim Stalker and
R. Storey and
Stephen J. Trevanion and
Abel Ureta{-}Vidal and
Jan Vogel and
Simon White and
Cara Woodwark and
Ewan Birney},
title = {Ensembl 2005},
journal = {Nucleic Acids Res.},
volume = {33},
number = {Database-Issue},
pages = {447--453},
year = {2005},
url = {https://doi.org/10.1093/nar/gki138},
doi = {10.1093/NAR/GKI138},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HubbardAC05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/AshurstCGJKMSSSTWH05,
author = {J. L. Ashurst and
C.{-}K. Chen and
James G. R. Gilbert and
Kerstin Jekosch and
Stephen Keenan and
Patrick Meidl and
Stephen M. J. Searle and
Jim Stalker and
R. Storey and
Stephen J. Trevanion and
Laurens G. Wilming and
Tim J. P. Hubbard},
title = {The Vertebrate Genome Annotation (Vega) database},
journal = {Nucleic Acids Res.},
volume = {33},
number = {Database-Issue},
pages = {459--465},
year = {2005},
url = {https://doi.org/10.1093/nar/gki135},
doi = {10.1093/NAR/GKI135},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/AshurstCGJKMSSSTWH05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eccb/PrlicDH05,
author = {Andreas Prlic and
Thomas A. Down and
Tim J. P. Hubbard},
title = {Adding Some {SPICE} to {DAS}},
booktitle = {ECCB/JBI'05 Proceedings, Fourth European Conference on Computational
Biology/Sixth Meeting of the Spanish Bioinformatics Network (Jornadas
de BioInform{\'{a}}tica), Palacio de Congresos, Madrid, Spain,
September 28 - October 1, 2005},
pages = {41},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti1106},
doi = {10.1093/BIOINFORMATICS/BTI1106},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/eccb/PrlicDH05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DownH04,
author = {Thomas A. Down and
Tim J. P. Hubbard},
title = {What can we learn from noncoding regions of similarity between genomes?},
journal = {{BMC} Bioinform.},
volume = {5},
pages = {131},
year = {2004},
url = {https://doi.org/10.1186/1471-2105-5-131},
doi = {10.1186/1471-2105-5-131},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DownH04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/AndreevaHBHCM04,
author = {Antonina Andreeva and
Dave Howorth and
Steven E. Brenner and
Tim J. P. Hubbard and
Cyrus Chothia and
Alexey G. Murzin},
title = {{SCOP} database in 2004: refinements integrate structure and sequence
family data},
journal = {Nucleic Acids Res.},
volume = {32},
number = {Database-Issue},
pages = {226--229},
year = {2004},
url = {https://doi.org/10.1093/nar/gkh039},
doi = {10.1093/NAR/GKH039},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/AndreevaHBHCM04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BirneyAB04,
author = {Ewan Birney and
T. Daniel Andrews and
Paul Bevan and
Mario C{\'{a}}ccamo and
Graham Cameron and
Yuan Chen and
Laura Clarke and
Guy Coates and
Tony Cox and
James A. Cuff and
Val Curwen and
Tim Cutts and
Thomas A. Down and
Richard Durbin and
Eduardo Eyras and
Xos{\'{e}} M. Fern{\'{a}}ndez{-}Su{\'{a}}rez and
Paul J. Gane and
B. Gibbins and
James G. R. Gilbert and
Martin Hammond and
H. Hotz and
Vivek Iyer and
Andreas K{\"{a}}h{\"{a}}ri and
Kerstin Jekosch and
Arek Kasprzyk and
Damian Keefe and
Stephen Keenan and
Heikki Lehv{\"{a}}slaiho and
Graham P. McVicker and
Craig Melsopp and
Patrick Meidl and
Emmanuel Mongin and
Roger Pettett and
Simon C. Potter and
Glenn Proctor and
Mark Rae and
Stephen M. J. Searle and
Guy Slater and
Damian Smedley and
James A. Smith and
William Spooner and
Arne Stabenau and
Jim Stalker and
R. Storey and
Abel Ureta{-}Vidal and
Cara Woodwark and
Michele E. Clamp and
Tim J. P. Hubbard},
title = {Ensembl 2004},
journal = {Nucleic Acids Res.},
volume = {32},
number = {Database-Issue},
pages = {468--470},
year = {2004},
url = {https://doi.org/10.1093/nar/gkh038},
doi = {10.1093/NAR/GKH038},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BirneyAB04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BernardoDH03,
author = {Diego di Bernardo and
Thomas A. Down and
Tim J. P. Hubbard},
title = {ddbRNA: detection of conserved secondary structures in multiple alignments},
journal = {Bioinform.},
volume = {19},
number = {13},
pages = {1606--1611},
year = {2003},
url = {https://doi.org/10.1093/bioinformatics/btg229},
doi = {10.1093/BIOINFORMATICS/BTG229},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BernardoDH03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ClampABBCCCCCCDDEGHHKKLIMMPPRSSSSSSSSUVB03,
author = {Michele E. Clamp and
T. Daniel Andrews and
Daniel Barker and
Paul Bevan and
Graham Cameron and
Yuan Chen and
Laura Clarke and
Tony Cox and
James A. Cuff and
Val Curwen and
Thomas A. Down and
Richard Durbin and
Eduardo Eyras and
James G. R. Gilbert and
Martin Hammond and
Tim J. P. Hubbard and
Arek Kasprzyk and
Damian Keefe and
Heikki Lehv{\"{a}}slaiho and
Vivek Iyer and
Craig Melsopp and
Emmanuel Mongin and
Roger Pettett and
Simon C. Potter and
Alistair G. Rust and
Esther Schmidt and
Stephen M. J. Searle and
Guy Slater and
James A. Smith and
William Spooner and
Arne Stabenau and
Jim Stalker and
Elia Stupka and
Abel Ureta{-}Vidal and
Imre Vastrik and
Ewan Birney},
title = {Ensembl 2002: accommodating comparative genomics},
journal = {Nucleic Acids Res.},
volume = {31},
number = {1},
pages = {38--42},
year = {2003},
url = {https://doi.org/10.1093/nar/gkg083},
doi = {10.1093/NAR/GKG083},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ClampABBCCCCCCDDEGHHKKLIMMPPRSSSSSSSSUVB03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeplaeH02,
author = {Rapha{\"{e}}l Leplae and
Tim J. P. Hubbard},
title = {MaxBench: evaluation of sequence and structure comparison methods},
journal = {Bioinform.},
volume = {18},
number = {3},
pages = {494--495},
year = {2002},
url = {https://doi.org/10.1093/bioinformatics/18.3.494},
doi = {10.1093/BIOINFORMATICS/18.3.494},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeplaeH02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HubbardBBCCCCCCDDEGHHKLLMMPPPRSSSSSSSSUVC03,
author = {Tim J. P. Hubbard and
Daniel Barker and
Ewan Birney and
Graham Cameron and
Yuan Chen and
Laura Clarke and
Tony Cox and
James A. Cuff and
Val Curwen and
Thomas A. Down and
Richard Durbin and
Eduardo Eyras and
James G. R. Gilbert and
Martin Hammond and
Lukasz Huminiecki and
Arek Kasprzyk and
Heikki Lehv{\"{a}}slaiho and
Philip Lijnzaad and
Craig Melsopp and
Emmanuel Mongin and
Roger Pettett and
Matthew R. Pocock and
Simon C. Potter and
Alistair G. Rust and
Esther Schmidt and
Stephen M. J. Searle and
Guy Slater and
James A. Smith and
William Spooner and
Arne Stabenau and
Jim Stalker and
Elia Stupka and
Abel Ureta{-}Vidal and
Imre Vastrik and
Michele E. Clamp},
title = {The Ensembl genome database project},
journal = {Nucleic Acids Res.},
volume = {30},
number = {1},
pages = {38--41},
year = {2002},
url = {https://doi.org/10.1093/nar/30.1.38},
doi = {10.1093/NAR/30.1.38},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HubbardBBCCCCCCDDEGHHKLLMMPPPRSSSSSSSSUVC03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ConteBHCM03,
author = {Loredana Lo Conte and
Steven E. Brenner and
Tim J. P. Hubbard and
Cyrus Chothia and
Alexey G. Murzin},
title = {{SCOP} database in 2002: refinements accommodate structural genomics},
journal = {Nucleic Acids Res.},
volume = {30},
number = {1},
pages = {264--267},
year = {2002},
url = {https://doi.org/10.1093/nar/30.1.264},
doi = {10.1093/NAR/30.1.264},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ConteBHCM03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eccb/Hubbard02,
author = {Tim J. P. Hubbard},
title = {Biological information: making it accessible and integrated (and trying
to make sense of it)},
booktitle = {Proceedings of the European Conference on Computational Biology {(ECCB}
2002), October 6-9, 2002, Saarbr{\"{u}}cken, Germany},
pages = {140--140},
year = {2002},
timestamp = {Thu, 23 Jun 2016 15:53:27 +0200},
biburl = {https://dblp.org/rec/conf/eccb/Hubbard02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PocockH00,
author = {Matthew R. Pocock and
Tim J. P. Hubbard},
title = {A browser for expression data},
journal = {Bioinform.},
volume = {16},
number = {4},
pages = {402--403},
year = {2000},
url = {https://doi.org/10.1093/bioinformatics/16.4.402},
doi = {10.1093/BIOINFORMATICS/16.4.402},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PocockH00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ConteAHBMC00,
author = {Loredana Lo Conte and
Bart Ailey and
Tim J. P. Hubbard and
Steven E. Brenner and
Alexey G. Murzin and
Cyrus Chothia},
title = {{SCOP:} a Structural Classification of Proteins database},
journal = {Nucleic Acids Res.},
volume = {28},
number = {1},
pages = {257--259},
year = {2000},
url = {https://doi.org/10.1093/nar/28.1.257},
doi = {10.1093/NAR/28.1.257},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ConteAHBMC00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HubbardABMC99,
author = {Tim J. P. Hubbard and
Bart Ailey and
Steven E. Brenner and
Alexey G. Murzin and
Cyrus Chothia},
title = {{SCOP:} a Structural Classification of Proteins database},
journal = {Nucleic Acids Res.},
volume = {27},
number = {1},
pages = {254--256},
year = {1999},
url = {https://doi.org/10.1093/nar/27.1.254},
doi = {10.1093/NAR/27.1.254},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HubbardABMC99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PocockHB98,
author = {Matthew R. Pocock and
Tim J. P. Hubbard and
Ewan Birney},
title = {{SPEM:} a parser for {EMBL} style flat file database entries},
journal = {Bioinform.},
volume = {14},
number = {9},
pages = {823--824},
year = {1998},
url = {https://doi.org/10.1093/bioinformatics/14.9.823},
doi = {10.1093/BIOINFORMATICS/14.9.823},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PocockHB98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HubbardMBC97,
author = {Tim J. P. Hubbard and
Alexey G. Murzin and
Steven E. Brenner and
Cyrus Chothia},
title = {{SCOP:} a structural classification of proteins database},
journal = {Nucleic Acids Res.},
volume = {25},
number = {1},
pages = {236--239},
year = {1997},
url = {https://doi.org/10.1093/nar/25.1.236},
doi = {10.1093/NAR/25.1.236},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HubbardMBC97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/BrennerH95,
author = {Steven E. Brenner and
Tim J. P. Hubbard},
editor = {Christopher J. Rawlings and
Dominic A. Clark and
Russ B. Altman and
Lawrence Hunter and
Thomas Lengauer and
Shoshana J. Wodak},
title = {A Specification for Defining and Annotating Regions of Macromolecular
Structures},
booktitle = {Proceedings of the Third International Conference on Intelligent Systems
for Molecular Biology, Cambridge, United Kingdom, July 16-19, 1995},
pages = {66--74},
publisher = {{AAAI}},
year = {1995},
url = {http://www.aaai.org/Library/ISMB/1995/ismb95-008.php},
timestamp = {Thu, 13 Dec 2012 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/BrennerH95.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hicss/Hubbard94,
author = {Tim J. P. Hubbard},
title = {Use of beta-strand Interaction Pseudo-Potentials in Protein Structure
Prediction and Modeling},
booktitle = {27th Annual Hawaii International Conference on System Sciences (HICSS-27),
January 4-7, 1994, Maui, Hawaii, {USA}},
pages = {336--344},
publisher = {{IEEE} Computer Society},
year = {1994},
timestamp = {Mon, 04 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/hicss/Hubbard94.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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