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BibTeX records: Vladimir Jojic
@article{DBLP:journals/jcb/ChenSHKJ20, author = {Zhenghao Chen and Ilya Soifer and Hugo Hilton and Leeat Keren and Vladimir Jojic}, title = {Modeling Multiplexed Images with Spatial-LDA Reveals Novel Tissue Microenvironments}, journal = {J. Comput. Biol.}, volume = {27}, number = {8}, pages = {1204--1218}, year = {2020}, url = {https://doi.org/10.1089/cmb.2019.0340}, doi = {10.1089/CMB.2019.0340}, timestamp = {Wed, 16 Mar 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/ChenSHKJ20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1901-07667, author = {Yeu{-}Chern Harn and Zhenghao Chen and Vladimir Jojic}, title = {Composition and decomposition of GANs}, journal = {CoRR}, volume = {abs/1901.07667}, year = {2019}, url = {http://arxiv.org/abs/1901.07667}, eprinttype = {arXiv}, eprint = {1901.07667}, timestamp = {Sat, 02 Feb 2019 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-1901-07667.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/BiswasMLDJ16, author = {Surojit Biswas and Meredith McDonald and Derek S. Lundberg and Jeffery L. Dangl and Vladimir Jojic}, title = {Learning Microbial Interaction Networks from Metagenomic Count Data}, journal = {J. Comput. Biol.}, volume = {23}, number = {6}, pages = {526--535}, year = {2016}, url = {https://doi.org/10.1089/cmb.2016.0061}, doi = {10.1089/CMB.2016.0061}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcb/BiswasMLDJ16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/YangJLCZL16, author = {Shan Yang and Vladimir Jojic and Jun Lian and Ronald C. Chen and Hongtu Zhu and Ming C. Lin}, editor = {S{\'{e}}bastien Ourselin and Leo Joskowicz and Mert R. Sabuncu and G{\"{o}}zde B. {\"{U}}nal and William M. Wells III}, title = {Classification of Prostate Cancer Grades and T-Stages Based on Tissue Elasticity Using Medical Image Analysis}, booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI} 2016 - 19th International Conference, Athens, Greece, October 17-21, 2016, Proceedings, Part {I}}, series = {Lecture Notes in Computer Science}, volume = {9900}, pages = {627--635}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-46720-7\_73}, doi = {10.1007/978-3-319-46720-7\_73}, timestamp = {Mon, 05 Feb 2024 20:27:27 +0100}, biburl = {https://dblp.org/rec/conf/miccai/YangJLCZL16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/uai/GaoJ16, author = {Tianxiang Gao and Vladimir Jojic}, editor = {Alexander Ihler and Dominik Janzing}, title = {Degrees of Freedom in Deep Neural Networks}, booktitle = {Proceedings of the Thirty-Second Conference on Uncertainty in Artificial Intelligence, {UAI} 2016, June 25-29, 2016, New York City, NY, {USA}}, publisher = {{AUAI} Press}, year = {2016}, url = {http://auai.org/uai2016/proceedings/papers/257.pdf}, timestamp = {Mon, 05 Dec 2022 15:54:38 +0100}, biburl = {https://dblp.org/rec/conf/uai/GaoJ16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/GaoJ16, author = {Tianxiang Gao and Vladimir Jojic}, title = {Degrees of Freedom in Deep Neural Networks}, journal = {CoRR}, volume = {abs/1603.09260}, year = {2016}, url = {http://arxiv.org/abs/1603.09260}, eprinttype = {arXiv}, eprint = {1603.09260}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/GaoJ16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/HarnPSJ15, author = {Yeu{-}Chern Harn and M. J. Powers and Elizabeth A. Shank and Vladimir Jojic}, title = {Deconvolving molecular signatures of interactions between microbial colonies}, journal = {Bioinform.}, volume = {31}, number = {12}, pages = {142--150}, year = {2015}, url = {https://doi.org/10.1093/bioinformatics/btv251}, doi = {10.1093/BIOINFORMATICS/BTV251}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/HarnPSJ15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bcb/NieSJ15, author = {Dong Nie and Elizabeth A. Shank and Vladimir Jojic}, title = {A deep framework for bacterial image segmentation and classification}, booktitle = {Proceedings of the 6th {ACM} Conference on Bioinformatics, Computational Biology and Health Informatics, {BCB} 2015, Atlanta, GA, USA, September 9-12, 2015}, pages = {306--314}, publisher = {{ACM}}, year = {2015}, url = {https://doi.org/10.1145/2808719.2808751}, doi = {10.1145/2808719.2808751}, timestamp = {Tue, 06 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/bcb/NieSJ15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbi/CaoSJN15, author = {Tian Cao and Nikhil Singh and Vladimir Jojic and Marc Niethammer}, title = {Semi-coupled dictionary learning for deformation prediction}, booktitle = {12th {IEEE} International Symposium on Biomedical Imaging, {ISBI} 2015, Brooklyn, NY, USA, April 16-19, 2015}, pages = {691--694}, publisher = {{IEEE}}, year = {2015}, url = {https://doi.org/10.1109/ISBI.2015.7163967}, doi = {10.1109/ISBI.2015.7163967}, timestamp = {Wed, 04 Oct 2023 17:01:25 +0200}, biburl = {https://dblp.org/rec/conf/isbi/CaoSJN15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/GaoBDJ15, author = {Tianxiang Gao and Petter Brodin and Mark M. Davis and Vladimir Jojic}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Teri E. Klein and Marylyn D. Ritchie}, title = {Drug-induced mRNA Signatures Are Enriched for the Minority of Genes that Are Highly Heritable}, booktitle = {Biocomputing 2015: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 4-8, 2015}, pages = {395--406}, year = {2015}, url = {http://psb.stanford.edu/psb-online/proceedings/psb15/gao.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/GaoBDJ15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/recomb/BiswasMLDJ15, author = {Surojit Biswas and Meredith McDonald and Derek S. Lundberg and Jeffery L. Dangl and Vladimir Jojic}, editor = {Teresa M. Przytycka}, title = {Learning Microbial Interaction Networks from Metagenomic Count Data}, booktitle = {Research in Computational Molecular Biology - 19th Annual International Conference, {RECOMB} 2015, Warsaw, Poland, April 12-15, 2015, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9029}, pages = {32--43}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-319-16706-0\_6}, doi = {10.1007/978-3-319-16706-0\_6}, timestamp = {Mon, 13 May 2019 09:30:09 +0200}, biburl = {https://dblp.org/rec/conf/recomb/BiswasMLDJ15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cvpr/ZhengDJF14, author = {Enliang Zheng and Enrique Dunn and Vladimir Jojic and Jan{-}Michael Frahm}, title = {PatchMatch Based Joint View Selection and Depthmap Estimation}, booktitle = {2014 {IEEE} Conference on Computer Vision and Pattern Recognition, {CVPR} 2014, Columbus, OH, USA, June 23-28, 2014}, pages = {1510--1517}, publisher = {{IEEE} Computer Society}, year = {2014}, url = {https://doi.org/10.1109/CVPR.2014.196}, doi = {10.1109/CVPR.2014.196}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cvpr/ZhengDJF14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/recomb/FuJM14, author = {Chen{-}Ping Fu and Vladimir Jojic and Leonard McMillan}, editor = {Roded Sharan}, title = {An Alignment-Free Regression Approach for Estimating Allele-Specific Expression Using RNA-Seq Data}, booktitle = {Research in Computational Molecular Biology - 18th Annual International Conference, {RECOMB} 2014, Pittsburgh, PA, USA, April 2-5, 2014, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8394}, pages = {69--84}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-319-05269-4\_6}, doi = {10.1007/978-3-319-05269-4\_6}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/recomb/FuJM14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/CaoJMPCN13, author = {Tian Cao and Vladimir Jojic and Shannon Modla and Debbie Powell and Kirk Czymmek and Marc Niethammer}, editor = {Kensaku Mori and Ichiro Sakuma and Yoshinobu Sato and Christian Barillot and Nassir Navab}, title = {Robust Multimodal Dictionary Learning}, booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI} 2013 - 16th International Conference, Nagoya, Japan, September 22-26, 2013, Proceedings, Part {I}}, series = {Lecture Notes in Computer Science}, volume = {8149}, pages = {259--266}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-40811-3\_33}, doi = {10.1007/978-3-642-40811-3\_33}, timestamp = {Mon, 28 Nov 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/miccai/CaoJMPCN13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/BiswasJ13, author = {Surojit Biswas and Vladimir Jojic}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {{AMP:} Assembly Matching Pursuit}, booktitle = {Biocomputing 2013: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 3-7, 2013}, pages = {175--187}, publisher = {World Scientific Publishing}, year = {2013}, url = {http://psb.stanford.edu/psb-online/proceedings/psb13/biswas.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/BiswasJ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icdm/LiuGZJW12, author = {Eric Yi Liu and Zhishan Guo and Xiang Zhang and Vladimir Jojic and Wei Wang}, editor = {Mohammed Javeed Zaki and Arno Siebes and Jeffrey Xu Yu and Bart Goethals and Geoffrey I. Webb and Xindong Wu}, title = {Metric Learning from Relative Comparisons by Minimizing Squared Residual}, booktitle = {12th {IEEE} International Conference on Data Mining, {ICDM} 2012, Brussels, Belgium, December 10-13, 2012}, pages = {978--983}, publisher = {{IEEE} Computer Society}, year = {2012}, url = {https://doi.org/10.1109/ICDM.2012.38}, doi = {10.1109/ICDM.2012.38}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/icdm/LiuGZJW12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1207-4145, author = {Nebojsa Jojic and Vladimir Jojic and David Heckerman}, title = {Joint discovery of haplotype blocks and complex trait associations from {SNP} sequences}, journal = {CoRR}, volume = {abs/1207.4145}, year = {2012}, url = {http://arxiv.org/abs/1207.4145}, eprinttype = {arXiv}, eprint = {1207.4145}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-1207-4145.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/LasersonJK11, author = {Jonathan Laserson and Vladimir Jojic and Daphne Koller}, title = {Genovo: \emph{De Novo} Assembly for Metagenomes}, journal = {J. Comput. Biol.}, volume = {18}, number = {3}, pages = {429--443}, year = {2011}, url = {https://doi.org/10.1089/cmb.2010.0244}, doi = {10.1089/CMB.2010.0244}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/LasersonJK11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:journals/jmlr/JojicSK11, author = {Vladimir Jojic and Suchi Saria and Daphne Koller}, editor = {Geoffrey J. Gordon and David B. Dunson and Miroslav Dud{\'{\i}}k}, title = {Convex envelopes of complexity controlling penalties: the case against premature envelopment}, booktitle = {Proceedings of the Fourteenth International Conference on Artificial Intelligence and Statistics, {AISTATS} 2011, Fort Lauderdale, USA, April 11-13, 2011}, series = {{JMLR} Proceedings}, volume = {15}, pages = {399--406}, publisher = {JMLR.org}, year = {2011}, url = {http://proceedings.mlr.press/v15/jojic11a/jojic11a.pdf}, timestamp = {Wed, 29 May 2019 08:41:44 +0200}, biburl = {https://dblp.org/rec/journals/jmlr/JojicSK11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icml/JojicGK10, author = {Vladimir Jojic and Stephen Gould and Daphne Koller}, editor = {Johannes F{\"{u}}rnkranz and Thorsten Joachims}, title = {Accelerated dual decomposition for {MAP} inference}, booktitle = {Proceedings of the 27th International Conference on Machine Learning (ICML-10), June 21-24, 2010, Haifa, Israel}, pages = {503--510}, publisher = {Omnipress}, year = {2010}, url = {https://icml.cc/Conferences/2010/papers/628.pdf}, timestamp = {Wed, 03 Apr 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/icml/JojicGK10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/recomb/LasersonJK10, author = {Jonathan Laserson and Vladimir Jojic and Daphne Koller}, editor = {Bonnie Berger}, title = {Genovo: \emph{De Novo} Assembly for Metagenomes}, booktitle = {Research in Computational Molecular Biology, 14th Annual International Conference, {RECOMB} 2010, Lisbon, Portugal, April 25-28, 2010. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6044}, pages = {341--356}, publisher = {Springer}, year = {2010}, url = {https://doi.org/10.1007/978-3-642-12683-3\_22}, doi = {10.1007/978-3-642-12683-3\_22}, timestamp = {Mon, 13 May 2019 09:30:09 +0200}, biburl = {https://dblp.org/rec/conf/recomb/LasersonJK10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/NickleJHJKRPM08, author = {David C. Nickle and Nebojsa Jojic and David Heckerman and Vladimir Jojic and Darko Kirovski and Morgane Rolland and Sergei L. Kosakovsky Pond and James I. Mullins}, title = {Comparison of Immunogen Designs That Optimize Peptide Coverage: Reply to Fischer et al}, journal = {PLoS Comput. Biol.}, volume = {4}, number = {1}, year = {2008}, url = {https://doi.org/10.1371/journal.pcbi.0040025}, doi = {10.1371/JOURNAL.PCBI.0040025}, timestamp = {Thu, 10 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/NickleJHJKRPM08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/JojicHJ08, author = {Vladimir Jojic and Tomer Hertz and Nebojsa Jojic}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {Population Sequencing Using Short Reads: {HIV} as a Case Study}, booktitle = {Biocomputing 2008, Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, 4-8 January 2008}, pages = {114--125}, publisher = {World Scientific}, year = {2008}, url = {http://psb.stanford.edu/psb-online/proceedings/psb08/jojic.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/JojicHJ08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/recomb/DueckFJJGEMH08, author = {Delbert Dueck and Brendan J. Frey and Nebojsa Jojic and Vladimir Jojic and Guri Giaever and Andrew Emili and Gabe Musso and Robert Hegele}, editor = {Martin Vingron and Limsoon Wong}, title = {Constructing Treatment Portfolios Using Affinity Propagation}, booktitle = {Research in Computational Molecular Biology, 12th Annual International Conference, {RECOMB} 2008, Singapore, March 30 - April 2, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4955}, pages = {360--371}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-78839-3\_31}, doi = {10.1007/978-3-540-78839-3\_31}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/recomb/DueckFJJGEMH08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/ca/Jojic07, author = {Vladimir Jojic}, title = {Algorithms for rational vaccine design}, school = {University of Toronto, Canada}, year = {2007}, url = {https://librarysearch.library.utoronto.ca/permalink/01UTORONTO\_INST/14bjeso/alma991106595376006196}, timestamp = {Wed, 10 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/phd/ca/Jojic07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/nips/JojicJFMH05, author = {Nebojsa Jojic and Vladimir Jojic and Brendan J. Frey and Christopher Meek and David Heckerman}, title = {Using epitomes to model genetic diversity: Rational design of {HIV} vaccines}, booktitle = {Advances in Neural Information Processing Systems 18 [Neural Information Processing Systems, {NIPS} 2005, December 5-8, 2005, Vancouver, British Columbia, Canada]}, pages = {587--594}, year = {2005}, url = {https://proceedings.neurips.cc/paper/2005/hash/6b8b8e3bd6ad94b985c1b1f1b7a94cb2-Abstract.html}, timestamp = {Mon, 16 May 2022 15:41:51 +0200}, biburl = {https://dblp.org/rec/conf/nips/JojicJFMH05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ismb/JojicJMGSHH04, author = {Vladimir Jojic and Nebojsa Jojic and Christopher Meek and Dan Geiger and Adam C. Siepel and David Haussler and David Heckerman}, title = {Efficient approximations for learning phylogenetic {HMM} models from data}, booktitle = {Proceedings Twelfth International Conference on Intelligent Systems for Molecular Biology/Third European Conference on Computational Biology 2004, Glasgow, UK, July 31-August 4, 2004}, pages = {161--168}, year = {2004}, url = {https://doi.org/10.1093/bioinformatics/bth917}, doi = {10.1093/BIOINFORMATICS/BTH917}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/ismb/JojicJMGSHH04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/uai/JojicJH04, author = {Nebojsa Jojic and Vladimir Jojic and David Heckerman}, editor = {David Maxwell Chickering and Joseph Y. Halpern}, title = {Joint Discovery of Haplotype Blocks and Complex Trait Associations from {SNP} Sequences}, booktitle = {{UAI} '04, Proceedings of the 20th Conference in Uncertainty in Artificial Intelligence, Banff, Canada, July 7-11, 2004}, pages = {286--292}, publisher = {{AUAI} Press}, year = {2004}, url = {https://dslpitt.org/uai/displayArticleDetails.jsp?mmnu=1\&\#38;smnu=2\&\#38;article\_id=1120\&\#38;proceeding\_id=20}, timestamp = {Wed, 03 Feb 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/uai/JojicJH04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
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