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ORCIDBibTeX records: Tahsin M. Kurç
@inproceedings{DBLP:conf/wacv/YellapragadaGPK24,
author = {Srikar Yellapragada and
Alexandros Graikos and
Prateek Prasanna and
Tahsin M. Kur{\c{c}} and
Joel H. Saltz and
Dimitris Samaras},
title = {PathLDM: Text conditioned Latent Diffusion Model for Histopathology},
booktitle = {{IEEE/CVF} Winter Conference on Applications of Computer Vision, {WACV}
2024, Waikoloa, HI, USA, January 3-8, 2024},
pages = {5170--5179},
publisher = {{IEEE}},
year = {2024},
url = {https://doi.org/10.1109/WACV57701.2024.00510},
doi = {10.1109/WACV57701.2024.00510},
timestamp = {Wed, 17 Apr 2024 07:41:22 +0200},
biburl = {https://dblp.org/rec/conf/wacv/YellapragadaGPK24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MeirellesKKFST23,
author = {Andr{\'{e}} L. S. Meirelles and
Tahsin M. Kur{\c{c}} and
Jun Kong and
Renato Ferreira and
Joel H. Saltz and
George Teodoro},
title = {Effective and efficient active learning for deep learning-based tissue
image analysis},
journal = {Bioinform.},
volume = {39},
number = {4},
year = {2023},
url = {https://doi.org/10.1093/bioinformatics/btad138},
doi = {10.1093/BIOINFORMATICS/BTAD138},
timestamp = {Fri, 22 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MeirellesKKFST23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cmpb/KaczmarzykGKASK23,
author = {Jakub R. Kaczmarzyk and
Rajarsi Gupta and
Tahsin M. Kur{\c{c}} and
Shahira Abousamra and
Joel H. Saltz and
Peter K. Koo},
title = {ChampKit: {A} framework for rapid evaluation of deep neural networks
for patch-based histopathology classification},
journal = {Comput. Methods Programs Biomed.},
volume = {239},
pages = {107631},
year = {2023},
url = {https://doi.org/10.1016/j.cmpb.2023.107631},
doi = {10.1016/J.CMPB.2023.107631},
timestamp = {Tue, 12 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cmpb/KaczmarzykGKASK23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cvpr/Abousamra0KSS023,
author = {Shahira Abousamra and
Rajarsi Gupta and
Tahsin M. Kur{\c{c}} and
Dimitris Samaras and
Joel H. Saltz and
Chao Chen},
title = {Topology-Guided Multi-Class Cell Context Generation for Digital Pathology},
booktitle = {{IEEE/CVF} Conference on Computer Vision and Pattern Recognition,
{CVPR} 2023, Vancouver, BC, Canada, June 17-24, 2023},
pages = {3323--3333},
publisher = {{IEEE}},
year = {2023},
url = {https://doi.org/10.1109/CVPR52729.2023.00324},
doi = {10.1109/CVPR52729.2023.00324},
timestamp = {Mon, 28 Aug 2023 16:14:07 +0200},
biburl = {https://dblp.org/rec/conf/cvpr/Abousamra0KSS023.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/midl/AbousamraFYGKES23,
author = {Shahira Abousamra and
Danielle Fassler and
Jiachen Yao and
Rajarsi R. Gupta and
Tahsin M. Kur{\c{c}} and
Luisa F. Escobar{-}Hoyos and
Dimitris Samaras and
Kenneth Shroyer and
Joel H. Saltz and
Chao Chen},
editor = {Ipek Oguz and
Jack H. Noble and
Xiaoxiao Li and
Martin Styner and
Christian Baumgartner and
Mirabela Rusu and
Tobias Heimann and
Despina Kontos and
Bennett A. Landman and
Benoit M. Dawant},
title = {Unsupervised Stain Decomposition via Inversion Regulation for Multiplex
Immunohistochemistry Images},
booktitle = {Medical Imaging with Deep Learning, {MIDL} 2023, 10-12 July 2023,
Nashville, TN, {USA}},
series = {Proceedings of Machine Learning Research},
volume = {227},
pages = {74--94},
publisher = {{PMLR}},
year = {2023},
url = {https://proceedings.mlr.press/v227/abousamra24a.html},
timestamp = {Tue, 20 Feb 2024 17:19:52 +0100},
biburl = {https://dblp.org/rec/conf/midl/AbousamraFYGKES23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2302-01790,
author = {Annika Reinke and
Minu Tizabi and
Michael Baumgartner and
Matthias Eisenmann and
Doreen Heckmann{-}N{\"{o}}tzel and
A. Emre Kavur and
Tim R{\"{a}}dsch and
Carole H. Sudre and
Laura Aci{\'{o}}n and
Michela Antonelli and
Tal Arbel and
Spyridon Bakas and
Arriel Benis and
Matthew B. Blaschko and
Florian B{\"{u}}ttner and
M. Jorge Cardoso and
Veronika Cheplygina and
Jianxu Chen and
Evangelia Christodoulou and
Beth A. Cimini and
Gary S. Collins and
Keyvan Farahani and
Luciana Ferrer and
Adrian Galdran and
Bram van Ginneken and
Ben Glocker and
Patrick Godau and
Robert Haase and
Daniel A. Hashimoto and
Michael M. Hoffman and
Merel Huisman and
Fabian Isensee and
Pierre Jannin and
Charles E. Kahn and
Dagmar Kainmueller and
Bernhard Kainz and
Alexandros Karargyris and
Alan Karthikesalingam and
Hannes Kenngott and
Jens Kleesiek and
Florian Kofler and
Thijs Kooi and
Annette Kopp{-}Schneider and
Michal Kozubek and
Anna Kreshuk and
Tahsin M. Kur{\c{c}} and
Bennett A. Landman and
Geert Litjens and
Amin Madani and
Klaus H. Maier{-}Hein and
Anne L. Martel and
Peter Mattson and
Erik Meijering and
Bjoern H. Menze and
Karel G. M. Moons and
Henning M{\"{u}}ller and
Brennan Nichyporuk and
Felix Nickel and
Jens Petersen and
Susanne M. Rafelski and
Nasir M. Rajpoot and
Mauricio Reyes and
Michael A. Riegler and
Nicola Rieke and
Julio Saez{-}Rodriguez and
Clara I. S{\'{a}}nchez and
Shravya Shetty and
Maarten van Smeden and
Ronald M. Summers and
Abdel A. Taha and
Aleksei Tiulpin and
Sotirios A. Tsaftaris and
Ben Van Calster and
Ga{\"{e}}l Varoquaux and
Manuel Wiesenfarth and
Ziv R. Yaniv and
Paul F. J{\"{a}}ger and
Lena Maier{-}Hein},
title = {Understanding metric-related pitfalls in image analysis validation},
journal = {CoRR},
volume = {abs/2302.01790},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2302.01790},
doi = {10.48550/ARXIV.2302.01790},
eprinttype = {arXiv},
eprint = {2302.01790},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2302-01790.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2304-02255,
author = {Shahira Abousamra and
Rajarsi Gupta and
Tahsin M. Kur{\c{c}} and
Dimitris Samaras and
Joel H. Saltz and
Chao Chen},
title = {Topology-Guided Multi-Class Cell Context Generation for Digital Pathology},
journal = {CoRR},
volume = {abs/2304.02255},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2304.02255},
doi = {10.48550/ARXIV.2304.02255},
eprinttype = {arXiv},
eprint = {2304.02255},
timestamp = {Thu, 20 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2304-02255.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2309-00748,
author = {Srikar Yellapragada and
Alexandros Graikos and
Prateek Prasanna and
Tahsin M. Kur{\c{c}} and
Joel H. Saltz and
Dimitris Samaras},
title = {PathLDM: Text conditioned Latent Diffusion Model for Histopathology},
journal = {CoRR},
volume = {abs/2309.00748},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2309.00748},
doi = {10.48550/ARXIV.2309.00748},
eprinttype = {arXiv},
eprint = {2309.00748},
timestamp = {Mon, 11 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2309-00748.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2309-04631,
author = {Jakub R. Kaczmarzyk and
Alan O'Callaghan and
Fiona Inglis and
Tahsin M. Kur{\c{c}} and
Rajarsi Gupta and
Erich Bremer and
Peter Bankhead and
Joel H. Saltz},
title = {Open and reusable deep learning for pathology with WSInfer and QuPath},
journal = {CoRR},
volume = {abs/2309.04631},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2309.04631},
doi = {10.48550/ARXIV.2309.04631},
eprinttype = {arXiv},
eprint = {2309.04631},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2309-04631.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cmpb/MeirellesKST22,
author = {Andr{\'{e}} L. S. Meirelles and
Tahsin M. Kur{\c{c}} and
Joel H. Saltz and
George Teodoro},
title = {Effective active learning in digital pathology: {A} case study in
tumor infiltrating lymphocytes},
journal = {Comput. Methods Programs Biomed.},
volume = {220},
pages = {106828},
year = {2022},
url = {https://doi.org/10.1016/j.cmpb.2022.106828},
doi = {10.1016/J.CMPB.2022.106828},
timestamp = {Tue, 16 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cmpb/MeirellesKST22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jpdc/BarreirosMKFKST22,
author = {Willian Barreiros Jr. and
Alba C. M. A. Melo and
Jun Kong and
Renato Ferreira and
Tahsin M. Kur{\c{c}} and
Joel H. Saltz and
George Teodoro},
title = {Efficient microscopy image analysis on {CPU-GPU} systems with cost-aware
irregular data partitioning},
journal = {J. Parallel Distributed Comput.},
volume = {164},
pages = {40--54},
year = {2022},
url = {https://doi.org/10.1016/j.jpdc.2022.02.004},
doi = {10.1016/J.JPDC.2022.02.004},
timestamp = {Wed, 27 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jpdc/BarreirosMKFKST22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eccv/GuptaHKJMCSSKST22,
author = {Saumya Gupta and
Xiaoling Hu and
James Kaan and
Michael Jin and
Mutshipay Mpoy and
Katherine Chung and
Gagandeep Singh and
Mary M. Saltz and
Tahsin M. Kur{\c{c}} and
Joel H. Saltz and
Apostolos Tassiopoulos and
Prateek Prasanna and
Chao Chen},
editor = {Shai Avidan and
Gabriel J. Brostow and
Moustapha Ciss{\'{e}} and
Giovanni Maria Farinella and
Tal Hassner},
title = {Learning Topological Interactions for Multi-Class Medical Image Segmentation},
booktitle = {Computer Vision - {ECCV} 2022 - 17th European Conference, Tel Aviv,
Israel, October 23-27, 2022, Proceedings, Part {XXIX}},
series = {Lecture Notes in Computer Science},
volume = {13689},
pages = {701--718},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-19818-2\_40},
doi = {10.1007/978-3-031-19818-2\_40},
timestamp = {Tue, 06 Dec 2022 15:12:52 +0100},
biburl = {https://dblp.org/rec/conf/eccv/GuptaHKJMCSSKST22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2203-16622,
author = {Ujjwal Baid and
Sarthak Pati and
Tahsin M. Kur{\c{c}} and
Rajarsi Gupta and
Erich Bremer and
Shahira Abousamra and
Siddhesh P. Thakur and
Joel H. Saltz and
Spyridon Bakas},
title = {Federated Learning for the Classification of Tumor Infiltrating Lymphocytes},
journal = {CoRR},
volume = {abs/2203.16622},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2203.16622},
doi = {10.48550/ARXIV.2203.16622},
eprinttype = {arXiv},
eprint = {2203.16622},
timestamp = {Tue, 03 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2203-16622.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2204-12283,
author = {Mahmudul Hasan and
Jakub R. Kaczmarzyk and
David Paredes and
Lyanne Oblein and
Jaymie Oentoro and
Shahira Abousamra and
Michael Horowitz and
Dimitris Samaras and
Chao Chen and
Tahsin M. Kur{\c{c}} and
Kenneth R. Shroyer and
Joel H. Saltz},
title = {A Novel Framework for Characterization of Tumor-Immune Spatial Relationships
in Tumor Microenvironment},
journal = {CoRR},
volume = {abs/2204.12283},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2204.12283},
doi = {10.48550/ARXIV.2204.12283},
eprinttype = {arXiv},
eprint = {2204.12283},
timestamp = {Mon, 02 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2204-12283.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2206-01653,
author = {Lena Maier{-}Hein and
Annika Reinke and
Evangelia Christodoulou and
Ben Glocker and
Patrick Godau and
Fabian Isensee and
Jens Kleesiek and
Michal Kozubek and
Mauricio Reyes and
Michael A. Riegler and
Manuel Wiesenfarth and
Michael Baumgartner and
Matthias Eisenmann and
Doreen Heckmann{-}N{\"{o}}tzel and
A. Emre Kavur and
Tim R{\"{a}}dsch and
Minu Dietlinde Tizabi and
Laura Aci{\'{o}}n and
Michela Antonelli and
Tal Arbel and
Spyridon Bakas and
Peter Bankhead and
Arriel Benis and
M. Jorge Cardoso and
Veronika Cheplygina and
Beth A. Cimini and
Gary S. Collins and
Keyvan Farahani and
Bram van Ginneken and
Daniel A. Hashimoto and
Michael M. Hoffman and
Merel Huisman and
Pierre Jannin and
Charles E. Kahn and
Alexandros Karargyris and
Alan Karthikesalingam and
Hannes Kenngott and
Annette Kopp{-}Schneider and
Anna Kreshuk and
Tahsin M. Kur{\c{c}} and
Bennett A. Landman and
Geert Litjens and
Amin Madani and
Klaus H. Maier{-}Hein and
Anne L. Martel and
Peter Mattson and
Erik Meijering and
Bjoern H. Menze and
David Moher and
Karel G. M. Moons and
Henning M{\"{u}}ller and
Felix Nickel and
Brennan Nichyporuk and
Jens Petersen and
Nasir M. Rajpoot and
Nicola Rieke and
Julio Saez{-}Rodriguez and
Clarisa S{\'{a}}nchez Guti{\'{e}}rrez and
Shravya Shetty and
Maarten van Smeden and
Carole H. Sudre and
Ronald M. Summers and
Abdel A. Taha and
Sotirios A. Tsaftaris and
Ben Van Calster and
Ga{\"{e}}l Varoquaux and
Paul F. J{\"{a}}ger},
title = {Metrics reloaded: Pitfalls and recommendations for image analysis
validation},
journal = {CoRR},
volume = {abs/2206.01653},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2206.01653},
doi = {10.48550/ARXIV.2206.01653},
eprinttype = {arXiv},
eprint = {2206.01653},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2206-01653.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2206-06862,
author = {Jakub R. Kaczmarzyk and
Tahsin M. Kur{\c{c}} and
Shahira Abousamra and
Rajarsi Gupta and
Joel H. Saltz and
Peter K. Koo},
title = {Evaluating histopathology transfer learning with ChampKit},
journal = {CoRR},
volume = {abs/2206.06862},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2206.06862},
doi = {10.48550/ARXIV.2206.06862},
eprinttype = {arXiv},
eprint = {2206.06862},
timestamp = {Mon, 20 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2206-06862.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2206-07573,
author = {Rajarsi Gupta and
Jakub Kaczmarzyk and
Soma Kobayashi and
Tahsin M. Kur{\c{c}} and
Joel H. Saltz},
title = {{AI} and Pathology: Steering Treatment and Predicting Outcomes},
journal = {CoRR},
volume = {abs/2206.07573},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2206.07573},
doi = {10.48550/ARXIV.2206.07573},
eprinttype = {arXiv},
eprint = {2206.07573},
timestamp = {Tue, 21 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2206-07573.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2207-09654,
author = {Saumya Gupta and
Xiaoling Hu and
James Kaan and
Michael Jin and
Mutshipay Mpoy and
Katherine Chung and
Gagandeep Singh and
Mary M. Saltz and
Tahsin M. Kur{\c{c}} and
Joel H. Saltz and
Apostolos Tassiopoulos and
Prateek Prasanna and
Chao Chen},
title = {Learning Topological Interactions for Multi-Class Medical Image Segmentation},
journal = {CoRR},
volume = {abs/2207.09654},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2207.09654},
doi = {10.48550/ARXIV.2207.09654},
eprinttype = {arXiv},
eprint = {2207.09654},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2207-09654.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cmpb/GomesKKMFST21,
author = {Jeremias M. Gomes and
Jun Kong and
Tahsin M. Kur{\c{c}} and
Alba C. M. A. Melo and
Renato Ferreira and
Joel H. Saltz and
George Teodoro},
title = {Building robust pathology image analyses with uncertainty quantification},
journal = {Comput. Methods Programs Biomed.},
volume = {208},
pages = {106291},
year = {2021},
url = {https://doi.org/10.1016/j.cmpb.2021.106291},
doi = {10.1016/J.CMPB.2021.106291},
timestamp = {Tue, 16 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cmpb/GomesKKMFST21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/RajupetWMMWKHSS21,
author = {Sritha Rajupet and
Rachel Wong and
Donna Moller and
Lisa Maldonado and
Tricia Weiss and
Tahsin M. Kur{\c{c}} and
Janos G. Hajagos and
Hasit Shah and
Mary M. Saltz and
Joel H. Saltz and
Veena Lingam},
title = {Informatics to Power Post-COVID Care: {A} Framework for Patient Care
and Secondary Data Use},
booktitle = {{AMIA} 2021, American Medical Informatics Association Annual Symposium,
San Diego, CA, USA, October 30, 2021 - November 3, 2021},
publisher = {{AMIA}},
year = {2021},
url = {https://knowledge.amia.org/74229-amia-1.4622266/t005-1.4625076/t005-1.4625077/3567634-1.4625372/3628635-1.4625369},
timestamp = {Wed, 17 Apr 2024 11:46:53 +0200},
biburl = {https://dblp.org/rec/conf/amia/RajupetWMMWKHSS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/Sun0RKAH0SS21,
author = {Siao Sun and
Fusheng Wang and
Sina Rashidian and
Tahsin M. Kur{\c{c}} and
Kayley Abell{-}Hart and
Janos G. Hajagos and
Wei Zhu and
Mary M. Saltz and
Joel H. Saltz},
title = {Generating Longitudinal Synthetic {EHR} Data with Recurrent Autoencoders
and Generative Adversarial Networks},
booktitle = {{AMIA} 2021, American Medical Informatics Association Annual Symposium,
San Diego, CA, USA, October 30, 2021 - November 3, 2021},
publisher = {{AMIA}},
year = {2021},
url = {https://knowledge.amia.org/74229-amia-1.4622266/t005-1.4625076/t005-1.4625077/3577668-1.4625228/3575852-1.4625225},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/Sun0RKAH0SS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dmah-ws/SunWRKAHZSS21,
author = {Siao Sun and
Fusheng Wang and
Sina Rashidian and
Tahsin M. Kur{\c{c}} and
Kayley Abell{-}Hart and
Janos G. Hajagos and
Wei Zhu and
Mary M. Saltz and
Joel H. Saltz},
editor = {El Kindi Rezig and
Vijay Gadepally and
Timothy G. Mattson and
Michael Stonebraker and
Tim Kraska and
Fusheng Wang and
Gang Luo and
Jun Kong and
Alevtina Dubovitskaya},
title = {Generating Longitudinal Synthetic {EHR} Data with Recurrent Autoencoders
and Generative Adversarial Networks},
booktitle = {Heterogeneous Data Management, Polystores, and Analytics for Healthcare
- {VLDB} Workshops, Poly 2021 and {DMAH} 2021, Virtual Event, August
20, 2021, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {12921},
pages = {153--165},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-3-030-93663-1\_12},
doi = {10.1007/978-3-030-93663-1\_12},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/dmah-ws/SunWRKAHZSS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccv/AbousamraBAAYGK21,
author = {Shahira Abousamra and
David Belinsky and
John S. Van Arnam and
Felicia Allard and
Eric Yee and
Rajarsi Gupta and
Tahsin M. Kur{\c{c}} and
Dimitris Samaras and
Joel H. Saltz and
Chao Chen},
title = {Multi-Class Cell Detection Using Spatial Context Representation},
booktitle = {2021 {IEEE/CVF} International Conference on Computer Vision, {ICCV}
2021, Montreal, QC, Canada, October 10-17, 2021},
pages = {3985--3994},
publisher = {{IEEE}},
year = {2021},
url = {https://doi.org/10.1109/ICCV48922.2021.00397},
doi = {10.1109/ICCV48922.2021.00397},
timestamp = {Tue, 03 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/iccv/AbousamraBAAYGK21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ppopp/ShuGWDFK21,
author = {Tong Shu and
Yanfei Guo and
Justin M. Wozniak and
Xiaoning Ding and
Ian T. Foster and
Tahsin M. Kur{\c{c}}},
editor = {Jaejin Lee and
Erez Petrank},
title = {In-situ workflow auto-tuning through combining component models},
booktitle = {PPoPP '21: 26th {ACM} {SIGPLAN} Symposium on Principles and Practice
of Parallel Programming, Virtual Event, Republic of Korea, February
27- March 3, 2021},
pages = {467--468},
publisher = {{ACM}},
year = {2021},
url = {https://doi.org/10.1145/3437801.3441615},
doi = {10.1145/3437801.3441615},
timestamp = {Sun, 12 Jun 2022 19:46:08 +0200},
biburl = {https://dblp.org/rec/conf/ppopp/ShuGWDFK21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/ShuGWDFK21,
author = {Tong Shu and
Yanfei Guo and
Justin M. Wozniak and
Xiaoning Ding and
Ian T. Foster and
Tahsin M. Kur{\c{c}}},
editor = {Bronis R. de Supinski and
Mary W. Hall and
Todd Gamblin},
title = {Bootstrapping in-situ workflow auto-tuning via combining performance
models of component applications},
booktitle = {International Conference for High Performance Computing, Networking,
Storage and Analysis, {SC} 2021, St. Louis, Missouri, USA, November
14-19, 2021},
pages = {28},
publisher = {{ACM}},
year = {2021},
url = {https://doi.org/10.1145/3458817.3476197},
doi = {10.1145/3458817.3476197},
timestamp = {Tue, 08 Nov 2022 16:03:02 +0100},
biburl = {https://dblp.org/rec/conf/sc/ShuGWDFK21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/smc2/GainaruGXKSOPPH21,
author = {Ana Gainaru and
Dmitry Ganyushin and
Bing Xie and
Tahsin M. Kur{\c{c}} and
Joel H. Saltz and
Sarp Oral and
Norbert Podhorszki and
Franz Poeschel and
Axel Huebl and
Scott Klasky},
editor = {Jeffrey Nichols and
Arthur Barney Maccabe and
James J. Nutaro and
Swaroop Pophale and
Pravallika Devineni and
Theresa Ahearn and
Becky Verastegui},
title = {Understanding and Leveraging the {I/O} Patterns of Emerging Machine
Learning Analytics},
booktitle = {Driving Scientific and Engineering Discoveries Through the Integration
of Experiment, Big Data, and Modeling and Simulation - 21st Smoky
Mountains Computational Sciences and Engineering, {SMC} 2021, Virtual
Event, October 18-20, 2021, Revised Selected Papers},
series = {Communications in Computer and Information Science},
volume = {1512},
pages = {119--138},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-3-030-96498-6\_7},
doi = {10.1007/978-3-030-96498-6\_7},
timestamp = {Sun, 26 Nov 2023 00:57:51 +0100},
biburl = {https://dblp.org/rec/conf/smc2/GainaruGXKSOPPH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2104-05642,
author = {Annika Reinke and
Matthias Eisenmann and
Minu Dietlinde Tizabi and
Carole H. Sudre and
Tim R{\"{a}}dsch and
Michela Antonelli and
Tal Arbel and
Spyridon Bakas and
M. Jorge Cardoso and
Veronika Cheplygina and
Keyvan Farahani and
Ben Glocker and
Doreen Heckmann{-}N{\"{o}}tzel and
Fabian Isensee and
Pierre Jannin and
Charles E. Kahn and
Jens Kleesiek and
Tahsin M. Kur{\c{c}} and
Michal Kozubek and
Bennett A. Landman and
Geert Litjens and
Klaus H. Maier{-}Hein and
Bjoern H. Menze and
Henning M{\"{u}}ller and
Jens Petersen and
Mauricio Reyes and
Nicola Rieke and
Bram Stieltjes and
Ronald M. Summers and
Sotirios A. Tsaftaris and
Bram van Ginneken and
Annette Kopp{-}Schneider and
Paul J{\"{a}}ger and
Lena Maier{-}Hein},
title = {Common Limitations of Image Processing Metrics: {A} Picture Story},
journal = {CoRR},
volume = {abs/2104.05642},
year = {2021},
url = {https://arxiv.org/abs/2104.05642},
eprinttype = {arXiv},
eprint = {2104.05642},
timestamp = {Fri, 04 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2104-05642.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2110-04886,
author = {Shahira Abousamra and
David Belinsky and
John S. Van Arnam and
Felicia Allard and
Eric Yee and
Rajarsi Gupta and
Tahsin M. Kur{\c{c}} and
Dimitris Samaras and
Joel H. Saltz and
Chao Chen},
title = {Multi-Class Cell Detection Using Spatial Context Representation},
journal = {CoRR},
volume = {abs/2110.04886},
year = {2021},
url = {https://arxiv.org/abs/2110.04886},
eprinttype = {arXiv},
eprint = {2110.04886},
timestamp = {Tue, 03 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2110-04886.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/concurrency/BarreirosMKKMST20,
author = {Willian Barreiros Jr. and
Jeremias Moreira and
Tahsin M. Kur{\c{c}} and
Jun Kong and
Alba C. M. A. Melo and
Joel H. Saltz and
George Teodoro},
title = {Optimizing parameter sensitivity analysis of large-scale microscopy
image analysis workflows with multilevel computation reuse},
journal = {Concurr. Comput. Pract. Exp.},
volume = {32},
number = {2},
year = {2020},
url = {https://doi.org/10.1002/cpe.5403},
doi = {10.1002/CPE.5403},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/concurrency/BarreirosMKKMST20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/debu/LoganAACCGKEGGK20,
author = {Jeremy Logan and
Mark Ainsworth and
Chuck Atkins and
Jieyang Chen and
Jong Choi and
Junmin Gu and
James Kress and
Greg Eisenhauer and
Berk Geveci and
William F. Godoy and
Mark Kim and
Tahsin M. Kur{\c{c}} and
Qing Liu and
Kshitij Mehta and
George Ostrouchov and
Norbert Podhorszki and
David Pugmire and
Eric Suchyta and
Nicholas Thompson and
Ozan Tugluk and
Lipeng Wan and
Ruonan Wang and
Ben Whitney and
Matthew Wolf and
Kesheng Wu and
Scott Klasky},
title = {Extending the Publish/Subscribe Abstraction for High-Performance {I/O}
and Data Management at Extreme Scale},
journal = {{IEEE} Data Eng. Bull.},
volume = {43},
number = {1},
pages = {35--46},
year = {2020},
url = {http://sites.computer.org/debull/A20mar/p35.pdf},
timestamp = {Mon, 04 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/debu/LoganAACCGKEGGK20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/softx/GodoyPWAEGDCGHH20,
author = {William F. Godoy and
Norbert Podhorszki and
Ruonan Wang and
Chuck Atkins and
Greg Eisenhauer and
Junmin Gu and
Philip E. Davis and
Jong Choi and
Kai Germaschewski and
Kevin A. Huck and
Axel Huebl and
Mark Kim and
James Kress and
Tahsin M. Kur{\c{c}} and
Qing Liu and
Jeremy Logan and
Kshitij Mehta and
George Ostrouchov and
Manish Parashar and
Franz Poeschel and
David Pugmire and
Eric Suchyta and
Keichi Takahashi and
Nick Thompson and
Seiji Tsutsumi and
Lipeng Wan and
Matthew Wolf and
Kesheng Wu and
Scott Klasky},
title = {{ADIOS} 2: The Adaptable Input Output System. {A} framework for high-performance
data management},
journal = {SoftwareX},
volume = {12},
pages = {100561},
year = {2020},
url = {https://doi.org/10.1016/j.softx.2020.100561},
doi = {10.1016/J.SOFTX.2020.100561},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/softx/GodoyPWAEGDCGHH20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/titb/PanayidesAF0TYF20,
author = {Andreas S. Panayides and
Amir A. Amini and
Nenad D. Filipovic and
Ashish Sharma and
Sotirios A. Tsaftaris and
Alistair A. Young and
David J. Foran and
Nhan Do and
Spyretta Golemati and
Tahsin M. Kur{\c{c}} and
Kun Huang and
Konstantina S. Nikita and
Ben P. Veasey and
Michalis E. Zervakis and
Joel H. Saltz and
Constantinos S. Pattichis},
title = {{AI} in Medical Imaging Informatics: Current Challenges and Future
Directions},
journal = {{IEEE} J. Biomed. Health Informatics},
volume = {24},
number = {7},
pages = {1837--1857},
year = {2020},
url = {https://doi.org/10.1109/JBHI.2020.2991043},
doi = {10.1109/JBHI.2020.2991043},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/titb/PanayidesAF0TYF20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eccv/ParedesPPGFSKLT20,
author = {David Paredes and
Prateek Prasanna and
Christina Preece and
Rajarsi Gupta and
Farzad Fereidouni and
Dimitris Samaras and
Tahsin M. Kur{\c{c}} and
Richard M. Levenson and
Patricia Thompson{-}Carino and
Joel H. Saltz and
Chao Chen},
editor = {Adrien Bartoli and
Andrea Fusiello},
title = {Automated Assessment of the Curliness of Collagen Fiber in Breast
Cancer},
booktitle = {Computer Vision - {ECCV} 2020 Workshops - Glasgow, UK, August 23-28,
2020, Proceedings, Part {I}},
series = {Lecture Notes in Computer Science},
volume = {12535},
pages = {267--279},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-66415-2\_17},
doi = {10.1007/978-3-030-66415-2\_17},
timestamp = {Tue, 03 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/eccv/ParedesPPGFSKLT20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/AbousamraFHZGKE20,
author = {Shahira Abousamra and
Danielle Fassler and
Le Hou and
Yuwei Zhang and
Rajarsi Gupta and
Tahsin M. Kur{\c{c}} and
Luisa F. Escobar{-}Hoyos and
Dimitris Samaras and
Beatrice Knudson and
Kenneth Shroyer and
Joel H. Saltz and
Chao Chen},
title = {Weakly-Supervised Deep Stain Decomposition for Multiplex {IHC} Images},
booktitle = {17th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
2020, Iowa City, IA, USA, April 3-7, 2020},
pages = {481--485},
publisher = {{IEEE}},
year = {2020},
url = {https://doi.org/10.1109/ISBI45749.2020.9098652},
doi = {10.1109/ISBI45749.2020.9098652},
timestamp = {Wed, 04 Oct 2023 17:01:25 +0200},
biburl = {https://dblp.org/rec/conf/isbi/AbousamraFHZGKE20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2002-07913,
author = {Le Hou and
Rajarsi Gupta and
John S. Van Arnam and
Yuwei Zhang and
Kaustubh Sivalenka and
Dimitris Samaras and
Tahsin M. Kur{\c{c}} and
Joel H. Saltz},
title = {Dataset of Segmented Nuclei in Hematoxylin and Eosin Stained Histopathology
Images of 10 Cancer Types},
journal = {CoRR},
volume = {abs/2002.07913},
year = {2020},
url = {https://arxiv.org/abs/2002.07913},
eprinttype = {arXiv},
eprint = {2002.07913},
timestamp = {Tue, 03 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2002-07913.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2008-06991,
author = {Tong Shu and
Yanfei Guo and
Justin M. Wozniak and
Xiaoning Ding and
Ian T. Foster and
Tahsin M. Kur{\c{c}}},
title = {In-situ Workflow Auto-tuning via Combining Performance Models of Component
Applications},
journal = {CoRR},
volume = {abs/2008.06991},
year = {2020},
url = {https://arxiv.org/abs/2008.06991},
eprinttype = {arXiv},
eprint = {2008.06991},
timestamp = {Fri, 21 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2008-06991.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cbm/GomesBKMKST19,
author = {Jeremias M. Gomes and
Willian Barreiros Jr. and
Tahsin M. Kur{\c{c}} and
Alba C. M. A. Melo and
Jun Kong and
Joel H. Saltz and
George Teodoro},
title = {Sensitivity analysis in digital pathology: Handling large number of
parameters with compute expensive workflows},
journal = {Comput. Biol. Medicine},
volume = {108},
pages = {371--381},
year = {2019},
url = {https://doi.org/10.1016/j.compbiomed.2019.03.006},
doi = {10.1016/J.COMPBIOMED.2019.03.006},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/cbm/GomesBKMKST19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fgcs/WozniakDRSKTPW19,
author = {Justin M. Wozniak and
Matthieu Dorier and
Robert B. Ross and
Tong Shu and
Tahsin M. Kur{\c{c}} and
Li Tang and
Norbert Podhorszki and
Matthew Wolf},
title = {{MPI} jobs within {MPI} jobs: {A} practical way of enabling task-level
fault-tolerance in {HPC} workflows},
journal = {Future Gener. Comput. Syst.},
volume = {101},
pages = {576--589},
year = {2019},
url = {https://doi.org/10.1016/j.future.2019.05.020},
doi = {10.1016/J.FUTURE.2019.05.020},
timestamp = {Sun, 17 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/fgcs/WozniakDRSKTPW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jdi/TaveiraKMKBST19,
author = {Luis F. R. Taveira and
Tahsin M. Kur{\c{c}} and
Alba C. M. A. Melo and
Jun Kong and
Erich Bremer and
Joel H. Saltz and
George Teodoro},
title = {Multi-objective Parameter Auto-tuning for Tissue Image Segmentation
Workflows},
journal = {J. Digit. Imaging},
volume = {32},
number = {3},
pages = {521--533},
year = {2019},
url = {https://doi.org/10.1007/s10278-018-0138-z},
doi = {10.1007/S10278-018-0138-Z},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jdi/TaveiraKMKBST19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/pr/HouNKSKZGGCFS19,
author = {Le Hou and
Vu Nguyen and
Ariel B. Kanevsky and
Dimitris Samaras and
Tahsin M. Kur{\c{c}} and
Tianhao Zhao and
Rajarsi R. Gupta and
Yi Gao and
Wenjin Chen and
David J. Foran and
Joel H. Saltz},
title = {Sparse autoencoder for unsupervised nucleus detection and representation
in histopathology images},
journal = {Pattern Recognit.},
volume = {86},
pages = {188--200},
year = {2019},
url = {https://doi.org/10.1016/j.patcog.2018.09.007},
doi = {10.1016/J.PATCOG.2018.09.007},
timestamp = {Thu, 21 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/pr/HouNKSKZGGCFS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bracis/RamosRKST19,
author = {Rafael Marconi Ramos and
C{\'{e}}lia Ghedini Ralha and
Tahsin M. Kur{\c{c}} and
Joel H. Saltz and
George Teodoro},
title = {Increasing Accuracy of Medical {CNN} Applying Optimization Algorithms:
An Image Classification Case},
booktitle = {8th Brazilian Conference on Intelligent Systems, {BRACIS} 2019, Salvador,
Brazil, October 15-18, 2019},
pages = {233--238},
publisher = {{IEEE}},
year = {2019},
url = {https://doi.org/10.1109/BRACIS.2019.00049},
doi = {10.1109/BRACIS.2019.00049},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bracis/RamosRKST19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/brainles-ws/KurcSGHLABBDLWB19,
author = {Tahsin M. Kur{\c{c}} and
Ashish Sharma and
Rajarsi Gupta and
Le Hou and
Han Le and
Shahira Abousamra and
Erich Bremer and
Ryan Birmingham and
Tammy Diprima and
Nan Li and
Feiqiao Wang and
Joseph Balsamo and
Whitney Bremer and
Dimitris Samaras and
Joel H. Saltz},
editor = {Alessandro Crimi and
Spyridon Bakas},
title = {From Whole Slide Tissues to Knowledge: Mapping Sub-cellular Morphology
of Cancer},
booktitle = {Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain
Injuries - 5th International Workshop, BrainLes 2019, Held in Conjunction
with {MICCAI} 2019, Shenzhen, China, October 17, 2019, Revised Selected
Papers, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {11993},
pages = {371--379},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-46643-5\_37},
doi = {10.1007/978-3-030-46643-5\_37},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/brainles-ws/KurcSGHLABBDLWB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cvpr/HouASKGS19,
author = {Le Hou and
Ayush Agarwal and
Dimitris Samaras and
Tahsin M. Kur{\c{c}} and
Rajarsi R. Gupta and
Joel H. Saltz},
title = {Robust Histopathology Image Analysis: To Label or to Synthesize?},
booktitle = {{IEEE} Conference on Computer Vision and Pattern Recognition, {CVPR}
2019, Long Beach, CA, USA, June 16-20, 2019},
pages = {8533--8542},
publisher = {Computer Vision Foundation / {IEEE}},
year = {2019},
url = {http://openaccess.thecvf.com/content\_CVPR\_2019/html/Hou\_Robust\_Histopathology\_Image\_Analysis\_To\_Label\_or\_to\_Synthesize\_CVPR\_2019\_paper.html},
doi = {10.1109/CVPR.2019.00873},
timestamp = {Thu, 21 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cvpr/HouASKGS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icdcs/LoganMHKKPWW19,
author = {Jeremy Logan and
Kshitij Mehta and
Gerd Heber and
Scott Klasky and
Tahsin M. Kur{\c{c}} and
Norbert Podhorszki and
Patrick M. Widener and
Matthew Wolf},
title = {A Vision for Managing Extreme-Scale Data Hoards},
booktitle = {39th {IEEE} International Conference on Distributed Computing Systems,
{ICDCS} 2019, Dallas, TX, USA, July 7-10, 2019},
pages = {1806--1817},
publisher = {{IEEE}},
year = {2019},
url = {https://doi.org/10.1109/ICDCS.2019.00179},
doi = {10.1109/ICDCS.2019.00179},
timestamp = {Sun, 12 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icdcs/LoganMHKKPWW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/LeSKGSS19,
author = {Han Le and
Dimitris Samaras and
Tahsin M. Kur{\c{c}} and
Rajarsi Gupta and
Kenneth Shroyer and
Joel H. Saltz},
editor = {Dinggang Shen and
Tianming Liu and
Terry M. Peters and
Lawrence H. Staib and
Caroline Essert and
Sean Zhou and
Pew{-}Thian Yap and
Ali R. Khan},
title = {Pancreatic Cancer Detection in Whole Slide Images Using Noisy Label
Annotations},
booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
2019 - 22nd International Conference, Shenzhen, China, October 13-17,
2019, Proceedings, Part {I}},
series = {Lecture Notes in Computer Science},
volume = {11764},
pages = {541--549},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-32239-7\_60},
doi = {10.1007/978-3-030-32239-7\_60},
timestamp = {Mon, 19 Feb 2024 14:24:13 +0100},
biburl = {https://dblp.org/rec/conf/miccai/LeSKGSS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1904-04429,
author = {Maozheng Zhao and
Le Hou and
Han Le and
Dimitris Samaras and
Nebojsa Jojic and
Danielle Fassler and
Tahsin M. Kur{\c{c}} and
Rajarsi R. Gupta and
Kolya Malkin and
Shahira Abousamra and
Kenneth Shroyer and
Joel H. Saltz},
title = {Label Super Resolution with Inter-Instance Loss},
journal = {CoRR},
volume = {abs/1904.04429},
year = {2019},
url = {http://arxiv.org/abs/1904.04429},
eprinttype = {arXiv},
eprint = {1904.04429},
timestamp = {Thu, 21 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1904-04429.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1905-10841,
author = {Han Le and
Rajarsi R. Gupta and
Le Hou and
Shahira Abousamra and
Danielle Fassler and
Tahsin M. Kur{\c{c}} and
Dimitris Samaras and
Rebecca Batiste and
Tianhao Zhao and
Alison L. Van Dyke and
Ashish Sharma and
Erich Bremer and
Jonas S. Almeida and
Joel H. Saltz},
title = {Utilizing Automated Breast Cancer Detection to Identify Spatial Distributions
of Tumor Infiltrating Lymphocytes in Invasive Breast Cancer},
journal = {CoRR},
volume = {abs/1905.10841},
year = {2019},
url = {http://arxiv.org/abs/1905.10841},
eprinttype = {arXiv},
eprint = {1905.10841},
timestamp = {Thu, 21 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1905-10841.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1907-03960,
author = {Shahira Abousamra and
Le Hou and
Rajarsi R. Gupta and
Chao Chen and
Dimitris Samaras and
Tahsin M. Kur{\c{c}} and
Rebecca Batiste and
Tianhao Zhao and
Kenneth Shroyer and
Joel H. Saltz},
title = {Learning from Thresholds: Fully Automated Classification of Tumor
Infiltrating Lymphocytes for Multiple Cancer Types},
journal = {CoRR},
volume = {abs/1907.03960},
year = {2019},
url = {http://arxiv.org/abs/1907.03960},
eprinttype = {arXiv},
eprint = {1907.03960},
timestamp = {Thu, 21 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1907-03960.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1910-14548,
author = {Eduardo Scartezini and
Willian Barreiros Jr. and
Tahsin M. Kur{\c{c}} and
Jun Kong and
Alba C. M. A. Melo and
Joel H. Saltz and
George Teodoro},
title = {Run-time Parameter Sensitivity Analysis Optimizations},
journal = {CoRR},
volume = {abs/1910.14548},
year = {2019},
url = {http://arxiv.org/abs/1910.14548},
eprinttype = {arXiv},
eprint = {1910.14548},
timestamp = {Mon, 04 Nov 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1910-14548.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/concurrency/GomesMKKST18,
author = {Jeremias M. Gomes and
Alba Cristina Magalhaes Alves de Melo and
Jun Kong and
Tahsin M. Kur{\c{c}} and
Joel H. Saltz and
George Teodoro},
title = {Cooperative and out-of-core execution of the irregular wavefront propagation
pattern on hybrid machines with Intel{\textregistered} Xeon Phi{\texttrademark}},
journal = {Concurr. Comput. Pract. Exp.},
volume = {30},
number = {14},
year = {2018},
url = {https://doi.org/10.1002/cpe.4425},
doi = {10.1002/CPE.4425},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/concurrency/GomesMKKST18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/KurcSP018,
author = {Tahsin M. Kur{\c{c}} and
Joel H. Saltz and
Fred W. Prior and
Ashish Sharma},
title = {Systems Demonstration: Towards a Services Oriented Platform for Combined
Radiology-Pathology Image Analysis and Interpretation},
booktitle = {{AMIA} 2018, American Medical Informatics Association Annual Symposium,
San Francisco, CA, November 3-7, 2018},
publisher = {{AMIA}},
year = {2018},
url = {https://knowledge.amia.org/67852-amia-1.4259402/t008-1.4262115/t008-1.4262116/2974183-1.4262138/2976569-1.4262135},
timestamp = {Wed, 17 Apr 2024 11:47:15 +0200},
biburl = {https://dblp.org/rec/conf/amia/KurcSP018.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icdcs/KlaskyWAACEGGKK18,
author = {Scott Klasky and
Matthew Wolf and
Mark Ainsworth and
Chuck Atkins and
Jong Choi and
Greg Eisenhauer and
Berk Geveci and
William F. Godoy and
Mark Kim and
James Kress and
Tahsin M. Kur{\c{c}} and
Qing Liu and
Jeremy Logan and
Arthur B. Maccabe and
Kshitij Mehta and
George Ostrouchov and
Manish Parashar and
Norbert Podhorszki and
David Pugmire and
Eric Suchyta and
Lipeng Wan and
Ruonan Wang},
title = {A View from {ORNL:} Scientific Data Research Opportunities in the
Big Data Age},
booktitle = {38th {IEEE} International Conference on Distributed Computing Systems,
{ICDCS} 2018, Vienna, Austria, July 2-6, 2018},
pages = {1357--1368},
publisher = {{IEEE} Computer Society},
year = {2018},
url = {https://doi.org/10.1109/ICDCS.2018.00136},
doi = {10.1109/ICDCS.2018.00136},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icdcs/KlaskyWAACEGGKK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1810-02911,
author = {Luis F. R. Taveira and
Tahsin M. Kur{\c{c}} and
Alba C. M. A. Melo and
Jun Kong and
Erich Bremer and
Joel H. Saltz and
George Teodoro},
title = {Tuning for Tissue Image Segmentation Workflows for Accuracy and Performance},
journal = {CoRR},
volume = {abs/1810.02911},
year = {2018},
url = {http://arxiv.org/abs/1810.02911},
eprinttype = {arXiv},
eprint = {1810.02911},
timestamp = {Sat, 23 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1810-02911.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1810-13230,
author = {Quoc Dang Vu and
Simon Graham and
Minh Nguyen Nhat To and
Muhammad Shaban and
Talha Qaiser and
Navid Alemi Koohbanani and
Syed Ali Khurram and
Tahsin M. Kur{\c{c}} and
Keyvan Farahani and
Tianhao Zhao and
Rajarsi R. Gupta and
Jin Tae Kwak and
Nasir M. Rajpoot and
Joel H. Saltz},
title = {Methods for Segmentation and Classification of Digital Microscopy
Tissue Images},
journal = {CoRR},
volume = {abs/1810.13230},
year = {2018},
url = {http://arxiv.org/abs/1810.13230},
eprinttype = {arXiv},
eprint = {1810.13230},
timestamp = {Thu, 21 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1810-13230.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TeodoroKTMG17,
author = {George Teodoro and
Tahsin M. Kur{\c{c}} and
Luis F. R. Taveira and
Alba C. M. A. Melo and
Yi Gao},
title = {Algorithm sensitivity analysis and parameter tuning for tissue image
segmentation pipelines},
journal = {Bioinform.},
volume = {33},
number = {7},
pages = {1064--1072},
year = {2017},
url = {https://doi.org/10.1093/bioinformatics/btw749},
doi = {10.1093/BIOINFORMATICS/BTW749},
timestamp = {Mon, 16 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TeodoroKTMG17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijhpca/TeodoroKAKFS17,
author = {George Teodoro and
Tahsin M. Kur{\c{c}} and
Guilherme Andrade and
Jun Kong and
Renato Ferreira and
Joel H. Saltz},
title = {Application performance analysis and efficient execution on systems
with multi-core CPUs, GPUs and MICs: a case study with microscopy
image analysis},
journal = {Int. J. High Perform. Comput. Appl.},
volume = {31},
number = {1},
pages = {32--51},
year = {2017},
url = {https://doi.org/10.1177/1094342015594519},
doi = {10.1177/1094342015594519},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ijhpca/TeodoroKAKFS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aistats/HouSKGS17,
author = {Le Hou and
Dimitris Samaras and
Tahsin M. Kur{\c{c}} and
Yi Gao and
Joel H. Saltz},
editor = {Aarti Singh and
Xiaojin (Jerry) Zhu},
title = {ConvNets with Smooth Adaptive Activation Functions for Regression},
booktitle = {Proceedings of the 20th International Conference on Artificial Intelligence
and Statistics, {AISTATS} 2017, 20-22 April 2017, Fort Lauderdale,
FL, {USA}},
series = {Proceedings of Machine Learning Research},
volume = {54},
pages = {430--439},
publisher = {{PMLR}},
year = {2017},
url = {http://proceedings.mlr.press/v54/hou17a.html},
timestamp = {Mon, 16 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/aistats/HouSKGS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/Saltz0CPK17,
author = {Joel H. Saltz and
Ashish Sharma and
Alexis B. Carter and
Liron Pantanowitz and
Tahsin M. Kur{\c{c}}},
title = {20 Years of Digital Pathology - An Overview of the Road Travelled
and What is on the Horizon},
booktitle = {{AMIA} 2017, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 4-8, 2017},
publisher = {{AMIA}},
year = {2017},
url = {https://knowledge.amia.org/65881-amiab-1.4254737/t002-1.4258887/f002-1.4258888/2730939-1.4258928/2731791-1.4258925},
timestamp = {Wed, 17 Apr 2024 11:47:24 +0200},
biburl = {https://dblp.org/rec/conf/amia/Saltz0CPK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cluster/BarreirosTKKMS17,
author = {Willian Barreiros and
George Teodoro and
Tahsin M. Kur{\c{c}} and
Jun Kong and
Alba C. M. A. Melo and
Joel H. Saltz},
title = {Parallel and Efficient Sensitivity Analysis of Microscopy Image Segmentation
Workflows in Hybrid Systems},
booktitle = {2017 {IEEE} International Conference on Cluster Computing, {CLUSTER}
2017, Honolulu, HI, USA, September 5-8, 2017},
pages = {25--35},
publisher = {{IEEE} Computer Society},
year = {2017},
url = {https://doi.org/10.1109/CLUSTER.2017.28},
doi = {10.1109/CLUSTER.2017.28},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cluster/BarreirosTKKMS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cluster/ChoiLWOKLPKRSPC17,
author = {Jong Youl Choi and
Jeremy Logan and
Matthew Wolf and
George Ostrouchov and
Tahsin M. Kur{\c{c}} and
Qing Liu and
Norbert Podhorszki and
Scott Klasky and
Melissa Romanus and
Qian Sun and
Manish Parashar and
Randy Michael Churchill and
Choong{-}Seock Chang},
title = {{TGE:} Machine Learning Based Task Graph Embedding for Large-Scale
Topology Mapping},
booktitle = {2017 {IEEE} International Conference on Cluster Computing, {CLUSTER}
2017, Honolulu, HI, USA, September 5-8, 2017},
pages = {587--591},
publisher = {{IEEE} Computer Society},
year = {2017},
url = {https://doi.org/10.1109/CLUSTER.2017.67},
doi = {10.1109/CLUSTER.2017.67},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cluster/ChoiLWOKLPKRSPC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/europar/FosterAABCCCDDD17,
author = {Ian T. Foster and
Mark Ainsworth and
Bryce Allen and
Julie Bessac and
Franck Cappello and
Jong Youl Choi and
Emil M. Constantinescu and
Philip E. Davis and
Sheng Di and
Zichao Wendy Di and
Hanqi Guo and
Scott Klasky and
Kerstin Kleese van Dam and
Tahsin M. Kur{\c{c}} and
Qing Liu and
Abid Malik and
Kshitij Mehta and
Klaus Mueller and
Todd S. Munson and
George Ostrouchov and
Manish Parashar and
Tom Peterka and
Line Pouchard and
Dingwen Tao and
Ozan Tugluk and
Stefan M. Wild and
Matthew Wolf and
Justin M. Wozniak and
Wei Xu and
Shinjae Yoo},
editor = {Francisco F. Rivera and
Tom{\'{a}}s F. Pena and
Jos{\'{e}} Carlos Cabaleiro},
title = {Computing Just What You Need: Online Data Analysis and Reduction at
Extreme Scales},
booktitle = {Euro-Par 2017: Parallel Processing - 23rd International Conference
on Parallel and Distributed Computing, Santiago de Compostela, Spain,
August 28 - September 1, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10417},
pages = {3--19},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-64203-1\_1},
doi = {10.1007/978-3-319-64203-1\_1},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/europar/FosterAABCCCDDD17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gis/BaigVKSW17,
author = {Furqan Baig and
Hoang Vo and
Tahsin M. Kur{\c{c}} and
Joel H. Saltz and
Fusheng Wang},
editor = {Erik G. Hoel and
Shawn D. Newsam and
Siva Ravada and
Roberto Tamassia and
Goce Trajcevski},
title = {SparkGIS: Resource Aware Efficient In-Memory Spatial Query Processing},
booktitle = {Proceedings of the 25th {ACM} {SIGSPATIAL} International Conference
on Advances in Geographic Information Systems, {GIS} 2017, Redondo
Beach, CA, USA, November 7-10, 2017},
pages = {28:1--28:10},
publisher = {{ACM}},
year = {2017},
url = {https://doi.org/10.1145/3139958.3140019},
doi = {10.1145/3139958.3140019},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/gis/BaigVKSW17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccS/LiuPCLWKKH17,
author = {Qing Liu and
Norbert Podhorszki and
Jong Youl Choi and
Jeremy Logan and
Matthew Wolf and
Scott Klasky and
Tahsin M. Kur{\c{c}} and
Xubin He},
editor = {Petros Koumoutsakos and
Michael Lees and
Valeria V. Krzhizhanovskaya and
Jack J. Dongarra and
Peter M. A. Sloot},
title = {StoreRush: An Application-Level Approach to Harvesting Idle Storage
in a Best Effort Environment},
booktitle = {International Conference on Computational Science, {ICCS} 2017, 12-14
June 2017, Zurich, Switzerland},
series = {Procedia Computer Science},
volume = {108},
pages = {475--484},
publisher = {Elsevier},
year = {2017},
url = {https://doi.org/10.1016/j.procs.2017.05.005},
doi = {10.1016/J.PROCS.2017.05.005},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/iccS/LiuPCLWKKH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/midp/ZhouYZWWZKTSG17,
author = {Naiyun Zhou and
Xiaxia Yu and
Tianhao Zhao and
Si Wen and
Fusheng Wang and
Wei Zhu and
Tahsin M. Kur{\c{c}} and
Allen R. Tannenbaum and
Joel H. Saltz and
Yi Gao},
editor = {Metin N. Gurcan and
John E. Tomaszewski},
title = {Evaluation of nucleus segmentation in digital pathology images through
large scale image synthesis},
booktitle = {Medical Imaging 2017: Digital Pathology, Orlando, Florida, United
States, 11-16 February 2017},
series = {{SPIE} Proceedings},
volume = {10140},
pages = {101400K},
publisher = {{SPIE}},
year = {2017},
url = {https://doi.org/10.1117/12.2254220},
doi = {10.1117/12.2254220},
timestamp = {Mon, 16 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/midp/ZhouYZWWZKTSG17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wacv/MurthyHSKS17,
author = {Veda Murthy and
Le Hou and
Dimitris Samaras and
Tahsin M. Kur{\c{c}} and
Joel H. Saltz},
title = {Center-Focusing Multi-task {CNN} with Injected Features for Classification
of Glioma Nuclear Images},
booktitle = {2017 {IEEE} Winter Conference on Applications of Computer Vision,
{WACV} 2017, Santa Rosa, CA, USA, March 24-31, 2017},
pages = {834--841},
publisher = {{IEEE} Computer Society},
year = {2017},
url = {https://doi.org/10.1109/WACV.2017.98},
doi = {10.1109/WACV.2017.98},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wacv/MurthyHSKS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/HouNSKGZS17,
author = {Le Hou and
Vu Nguyen and
Dimitris Samaras and
Tahsin M. Kur{\c{c}} and
Yi Gao and
Tianhao Zhao and
Joel H. Saltz},
title = {Sparse Autoencoder for Unsupervised Nucleus Detection and Representation
in Histopathology Images},
journal = {CoRR},
volume = {abs/1704.00406},
year = {2017},
url = {http://arxiv.org/abs/1704.00406},
eprinttype = {arXiv},
eprint = {1704.00406},
timestamp = {Mon, 16 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/HouNSKGZS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1712-05021,
author = {Le Hou and
Ayush Agarwal and
Dimitris Samaras and
Tahsin M. Kur{\c{c}} and
Rajarsi R. Gupta and
Joel H. Saltz},
title = {Unsupervised Histopathology Image Synthesis},
journal = {CoRR},
volume = {abs/1712.05021},
year = {2017},
url = {http://arxiv.org/abs/1712.05021},
eprinttype = {arXiv},
eprint = {1712.05021},
timestamp = {Thu, 21 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1712-05021.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/BremerKGSA16,
author = {Erich Bremer and
Tahsin M. Kur{\c{c}} and
Yi Gao and
Joel H. Saltz and
Jonas S. Almeida},
title = {Safe "cloudification" of large images through picker APIs},
booktitle = {{AMIA} 2016, American Medical Informatics Association Annual Symposium,
Chicago, IL, USA, November 12-16, 2016},
publisher = {{AMIA}},
year = {2016},
url = {https://knowledge.amia.org/amia-63300-1.3360278/t004-1.3364525/f004-1.3364526/2498561-1.3364996/2498378-1.3364991},
timestamp = {Wed, 17 Apr 2024 11:47:32 +0200},
biburl = {https://dblp.org/rec/conf/amia/BremerKGSA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/LynnBKSJ16,
author = {Veronica E. Lynn and
Niranjan Balasubramanian and
Tahsin M. Kur{\c{c}} and
Joel H. Saltz and
Rebecca Jacobson},
title = {{POE:} {A} Pathology Extraction Tool for Finding Attribute-Value Pairs
in Glioma Pathology Reports},
booktitle = {{AMIA} 2016, American Medical Informatics Association Annual Symposium,
Chicago, IL, USA, November 12-16, 2016},
publisher = {{AMIA}},
year = {2016},
url = {https://knowledge.amia.org/amia-63300-1.3360278/t001-1.3365273/f001-1.3365274/2496645-1.3365482/2499114-1.3365477},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/LynnBKSJ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cvpr/HouSKGDS16,
author = {Le Hou and
Dimitris Samaras and
Tahsin M. Kur{\c{c}} and
Yi Gao and
James E. Davis and
Joel H. Saltz},
title = {Patch-Based Convolutional Neural Network for Whole Slide Tissue Image
Classification},
booktitle = {2016 {IEEE} Conference on Computer Vision and Pattern Recognition,
{CVPR} 2016, Las Vegas, NV, USA, June 27-30, 2016},
pages = {2424--2433},
publisher = {{IEEE} Computer Society},
year = {2016},
url = {https://doi.org/10.1109/CVPR.2016.266},
doi = {10.1109/CVPR.2016.266},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cvpr/HouSKGDS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/PugmireKCKKCWEC16,
author = {David Pugmire and
James Kress and
Jong Youl Choi and
Scott Klasky and
Tahsin M. Kur{\c{c}} and
Michael Churchill and
Matthew Wolf and
Greg Eisenhauer and
Hank Childs and
Kesheng Wu and
Alexander Sim and
Junmin Gu and
Jonathan Low},
title = {Visualization and Analysis for Near-Real-Time Decision Making in Distributed
Workflows},
booktitle = {2016 {IEEE} International Parallel and Distributed Processing Symposium
Workshops, {IPDPS} Workshops 2016, Chicago, IL, USA, May 23-27, 2016},
pages = {1007--1013},
publisher = {{IEEE} Computer Society},
year = {2016},
url = {https://doi.org/10.1109/IPDPSW.2016.175},
doi = {10.1109/IPDPSW.2016.175},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ipps/PugmireKCKKCWEC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/midp/GaoLAZRKST16,
author = {Yi Gao and
William Liu and
Shipra Arjun and
Liangjia Zhu and
Vadim Ratner and
Tahsin M. Kur{\c{c}} and
Joel H. Saltz and
Allen R. Tannenbaum},
editor = {Metin N. Gurcan and
Anant Madabhushi},
title = {Multi-scale learning based segmentation of glands in digital colonrectal
pathology images},
booktitle = {Medical Imaging 2016: Digital Pathology, San Diego, California, United
States, 27 February - 3 March 2016},
series = {{SPIE} Proceedings},
volume = {9791},
pages = {97910M},
publisher = {{SPIE}},
year = {2016},
url = {https://doi.org/10.1117/12.2216790},
doi = {10.1117/12.2216790},
timestamp = {Mon, 16 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/midp/GaoLAZRKST16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/midp/GaoRZDKTS16,
author = {Yi Gao and
Vadim Ratner and
Liangjia Zhu and
Tammy Diprima and
Tahsin M. Kur{\c{c}} and
Allen R. Tannenbaum and
Joel H. Saltz},
editor = {Metin N. Gurcan and
Anant Madabhushi},
title = {Hierarchical nucleus segmentation in digital pathology images},
booktitle = {Medical Imaging 2016: Digital Pathology, San Diego, California, United
States, 27 February - 3 March 2016},
series = {{SPIE} Proceedings},
volume = {9791},
pages = {979117},
publisher = {{SPIE}},
year = {2016},
url = {https://doi.org/10.1117/12.2217029},
doi = {10.1117/12.2217029},
timestamp = {Mon, 16 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/midp/GaoRZDKTS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/HouSKGS16,
author = {Le Hou and
Dimitris Samaras and
Tahsin M. Kur{\c{c}} and
Yi Gao and
Joel H. Saltz},
title = {Neural Networks with Smooth Adaptive Activation Functions for Regression},
journal = {CoRR},
volume = {abs/1608.06557},
year = {2016},
url = {http://arxiv.org/abs/1608.06557},
eprinttype = {arXiv},
eprint = {1608.06557},
timestamp = {Mon, 16 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/HouSKGS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/TeodoroKTMKS16,
author = {George Teodoro and
Tahsin M. Kur{\c{c}} and
Luis F. R. Taveira and
Alba C. M. A. Melo and
Jun Kong and
Joel H. Saltz},
title = {Efficient Methods and Parallel Execution for Algorithm Sensitivity
Analysis with Parameter Tuning on Microscopy Imaging Datasets},
journal = {CoRR},
volume = {abs/1612.03413},
year = {2016},
url = {http://arxiv.org/abs/1612.03413},
eprinttype = {arXiv},
eprint = {1612.03413},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/TeodoroKTMKS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/MurthyHSKS16,
author = {Veda Murthy and
Le Hou and
Dimitris Samaras and
Tahsin M. Kur{\c{c}} and
Joel H. Saltz},
title = {Center-Focusing Multi-task {CNN} with Injected Features for Classification
of Glioma Nuclear Images},
journal = {CoRR},
volume = {abs/1612.06825},
year = {2016},
url = {http://arxiv.org/abs/1612.06825},
eprinttype = {arXiv},
eprint = {1612.06825},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/MurthyHSKS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KurcQWWTCNLSF15,
author = {Tahsin M. Kur{\c{c}} and
Xin Qi and
Daihou Wang and
Fusheng Wang and
George Teodoro and
Lee A. D. Cooper and
Michael Nalisnik and
Lin Yang and
Joel H. Saltz and
David J. Foran},
title = {Scalable analysis of Big pathology image data cohorts using efficient
methods and high-performance computing strategies},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {399:1--399:21},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0831-6},
doi = {10.1186/S12859-015-0831-6},
timestamp = {Fri, 10 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KurcQWWTCNLSF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/AlmeidaHCKSS15,
author = {Jonas S. Almeida and
Janos G. Hajagos and
Ivan Crnosija and
Tahsin M. Kur{\c{c}} and
Mary M. Saltz and
Joel H. Saltz},
title = {OpenHealth Platform for Interactive Contextualization of Population
Health Open Data},
booktitle = {{AMIA} 2015, American Medical Informatics Association Annual Symposium,
San Francisco, CA, USA, November 14-18, 2015},
publisher = {{AMIA}},
year = {2015},
url = {https://knowledge.amia.org/59310-amia-1.2741865/t004-1.2745466/f004-1.2745467/2249244-1.2745828/2241207-1.2745825},
timestamp = {Wed, 17 Apr 2024 11:47:40 +0200},
biburl = {https://dblp.org/rec/conf/amia/AlmeidaHCKSS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/SaltzSHWBMCKBA15,
author = {Mary M. Saltz and
Joel H. Saltz and
Janos G. Hajagos and
Andrew White and
Charles Boicey and
Jim Murry and
Ivan Crnosija and
Tahsin M. Kur{\c{c}} and
Erich Bremer and
Jonas S. Almeida},
title = {Integrative Informatics and Predictive Modeling Support for Population
Health},
booktitle = {{AMIA} 2015, American Medical Informatics Association Annual Symposium,
San Francisco, CA, USA, November 14-18, 2015},
publisher = {{AMIA}},
year = {2015},
url = {https://knowledge.amia.org/59310-amia-1.2741865/t005-1.2744350/f005-1.2744351/2245692-1.2744628/2248478-1.2744625},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/SaltzSHWBMCKBA15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sbac-pad/GomesTMKKS15,
author = {Jeremias M. Gomes and
George Teodoro and
Alba de Melo and
Jun Kong and
Tahsin M. Kur{\c{c}} and
Joel H. Saltz},
title = {Efficient Irregular Wavefront Propagation Algorithms on Intel(R) Xeon
Phi(TM)},
booktitle = {27th International Symposium on Computer Architecture and High Performance
Computing, {SBAC-PAD} 2015, Florian{\'{o}}polis, Brazil, October
17-21, 2015},
pages = {25--32},
publisher = {{IEEE} Computer Society},
year = {2015},
url = {https://doi.org/10.1109/SBAC-PAD.2015.13},
doi = {10.1109/SBAC-PAD.2015.13},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sbac-pad/GomesTMKKS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/vldb/BaigMVWSK15,
author = {Furqan Baig and
Mudit Mehrotra and
Hoang Vo and
Fusheng Wang and
Joel H. Saltz and
Tahsin M. Kur{\c{c}}},
editor = {Fusheng Wang and
Gang Luo and
Chunhua Weng and
Arijit Khan and
Prasenjit Mitra and
Cong Yu},
title = {SparkGIS: Efficient Comparison and Evaluation of Algorithm Results
in Tissue Image Analysis Studies},
booktitle = {Biomedical Data Management and Graph Online Querying - {VLDB} 2015
Workshops, Big-O(Q) and DMAH, Waikoloa, HI, USA, August 31 - September
4, 2015, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {9579},
pages = {134--146},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-41576-5\_10},
doi = {10.1007/978-3-319-41576-5\_10},
timestamp = {Tue, 21 Mar 2023 20:58:01 +0100},
biburl = {https://dblp.org/rec/conf/vldb/BaigMVWSK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/HouSKGDS15,
author = {Le Hou and
Dimitris Samaras and
Tahsin M. Kur{\c{c}} and
Yi Gao and
James E. Davis and
Joel H. Saltz},
title = {Efficient Multiple Instance Convolutional Neural Networks for Gigapixel
Resolution Image Classification},
journal = {CoRR},
volume = {abs/1504.07947},
year = {2015},
url = {http://arxiv.org/abs/1504.07947},
eprinttype = {arXiv},
eprint = {1504.07947},
timestamp = {Mon, 16 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/HouSKGDS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/TeodoroKAKFS15,
author = {George Teodoro and
Tahsin M. Kur{\c{c}} and
Guilherme Andrade and
Jun Kong and
Renato Ferreira and
Joel H. Saltz},
title = {Performance Analysis and Efficient Execution on Systems with multi-core
CPUs, GPUs and MICs},
journal = {CoRR},
volume = {abs/1505.03819},
year = {2015},
url = {http://arxiv.org/abs/1505.03819},
eprinttype = {arXiv},
eprint = {1505.03819},
timestamp = {Thu, 31 Jan 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/TeodoroKAKFS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangQXKSF14,
author = {Lin Yang and
Xin Qi and
Fuyong Xing and
Tahsin M. Kur{\c{c}} and
Joel H. Saltz and
David J. Foran},
title = {Parallel content-based sub-image retrieval using hierarchical searching},
journal = {Bioinform.},
volume = {30},
number = {7},
pages = {996--1002},
year = {2014},
url = {https://doi.org/10.1093/bioinformatics/btt623},
doi = {10.1093/BIOINFORMATICS/BTT623},
timestamp = {Fri, 10 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangQXKSF14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/pc/TeodoroPKKCKS14,
author = {George Teodoro and
Tony Pan and
Tahsin M. Kur{\c{c}} and
Jun Kong and
Lee A. D. Cooper and
Scott Klasky and
Joel H. Saltz},
title = {Region templates: Data representation and management for high-throughput
image analysis},
journal = {Parallel Comput.},
volume = {40},
number = {10},
pages = {589--610},
year = {2014},
url = {https://doi.org/10.1016/j.parco.2014.09.003},
doi = {10.1016/J.PARCO.2014.09.003},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/pc/TeodoroPKKCKS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/TeodoroKKCS14,
author = {George Teodoro and
Tahsin M. Kur{\c{c}} and
Jun Kong and
Lee A. D. Cooper and
Joel H. Saltz},
title = {Comparative Performance Analysis of Intel {(R)} Xeon Phi (TM), GPU,
and {CPU:} {A} Case Study from Microscopy Image Analysis},
booktitle = {2014 {IEEE} 28th International Parallel and Distributed Processing
Symposium, Phoenix, AZ, USA, May 19-23, 2014},
pages = {1063--1072},
publisher = {{IEEE} Computer Society},
year = {2014},
url = {https://doi.org/10.1109/IPDPS.2014.111},
doi = {10.1109/IPDPS.2014.111},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ipps/TeodoroKKCS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sbac-pad/AndradeFTRSK14,
author = {Guilherme Andrade and
Renato Ferreira and
George Teodoro and
Leonardo Rocha and
Joel H. Saltz and
Tahsin M. Kur{\c{c}}},
title = {Efficient Execution of Microscopy Image Analysis on CPU, GPU, and
{MIC} Equipped Cluster Systems},
booktitle = {26th {IEEE} International Symposium on Computer Architecture and High
Performance Computing, {SBAC-PAD} 2014, Paris, France, October 22-24,
2014},
pages = {89--96},
publisher = {{IEEE} Computer Society},
year = {2014},
url = {https://doi.org/10.1109/SBAC-PAD.2014.15},
doi = {10.1109/SBAC-PAD.2014.15},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sbac-pad/AndradeFTRSK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/TeodoroPKKCKS14,
author = {George Teodoro and
Tony Pan and
Tahsin M. Kur{\c{c}} and
Jun Kong and
Lee A. D. Cooper and
Scott Klasky and
Joel H. Saltz},
title = {Region Templates: Data Representation and Management for Large-Scale
Image Analysis},
journal = {CoRR},
volume = {abs/1405.7958},
year = {2014},
url = {http://arxiv.org/abs/1405.7958},
eprinttype = {arXiv},
eprint = {1405.7958},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/TeodoroPKKCKS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijhpca/SaltzTPCKKK13,
author = {Joel H. Saltz and
George Teodoro and
Tony Pan and
Lee A. D. Cooper and
Jun Kong and
Scott Klasky and
Tahsin M. Kur{\c{c}}},
title = {Feature-based analysis of large-scale spatio-temporal sensor data
on hybrid architectures},
journal = {Int. J. High Perform. Comput. Appl.},
volume = {27},
number = {3},
pages = {263--272},
year = {2013},
url = {https://doi.org/10.1177/1094342013488260},
doi = {10.1177/1094342013488260},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ijhpca/SaltzTPCKKK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijsc/Vergara-NiedermayrWPKS13,
author = {Cristobal Vergara{-}Niedermayr and
Fusheng Wang and
Tony Pan and
Tahsin M. Kur{\c{c}} and
Joel H. Saltz},
title = {Semantically Interoperable {XML} Data},
journal = {Int. J. Semantic Comput.},
volume = {7},
number = {3},
pages = {237--256},
year = {2013},
url = {https://doi.org/10.1142/S1793351X13500037},
doi = {10.1142/S1793351X13500037},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ijsc/Vergara-NiedermayrWPKS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/GutmanCSPWKSBC13,
author = {David A. Gutman and
Jake Cobb and
Dhananjaya Somanna and
Yuna Park and
Fusheng Wang and
Tahsin M. Kur{\c{c}} and
Joel H. Saltz and
Daniel J. Brat and
Lee A. D. Cooper},
title = {Research and applications: Cancer Digital Slide Archive: an informatics
resource to support integrated in silico analysis of {TCGA} pathology
data},
journal = {J. Am. Medical Informatics Assoc.},
volume = {20},
number = {6},
pages = {1091--1098},
year = {2013},
url = {https://doi.org/10.1136/amiajnl-2012-001469},
doi = {10.1136/AMIAJNL-2012-001469},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/GutmanCSPWKSBC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/PostKCGLBCLHS13,
author = {Andrew R. Post and
Tahsin M. Kur{\c{c}} and
Sharath R. Cholleti and
Jingjing Gao and
Xia Lin and
William Bornstein and
Dedra Cantrell and
David Levine and
Sam Hohmann and
Joel H. Saltz},
title = {The Analytic Information Warehouse {(AIW):} {A} platform for analytics
using electronic health record data},
journal = {J. Biomed. Informatics},
volume = {46},
number = {3},
pages = {410--424},
year = {2013},
url = {https://doi.org/10.1016/j.jbi.2013.01.005},
doi = {10.1016/J.JBI.2013.01.005},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/PostKCGLBCLHS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/pc/TeodoroPKKCS13,
author = {George Teodoro and
Tony Pan and
Tahsin M. Kur{\c{c}} and
Jun Kong and
Lee A. D. Cooper and
Joel H. Saltz},
title = {Efficient irregular wavefront propagation algorithms on hybrid {CPU-GPU}
machines},
journal = {Parallel Comput.},
volume = {39},
number = {4-5},
pages = {189--211},
year = {2013},
url = {https://doi.org/10.1016/j.parco.2013.03.001},
doi = {10.1016/J.PARCO.2013.03.001},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/pc/TeodoroPKKCS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/PostKWRMPTASS13,
author = {Andrew R. Post and
Tahsin M. Kur{\c{c}} and
Richie Willard and
Himanshu Rathod and
Michel Mansour and
Akshatha Kalsanka Pai and
William M. Torian and
Sanjay Agravat and
Suzanne Sturm and
Joel H. Saltz},
title = {Temporal Abstraction-based Clinical Phenotyping with Eureka!},
booktitle = {{AMIA} 2013, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 16-20, 2013},
publisher = {{AMIA}},
year = {2013},
url = {https://knowledge.amia.org/amia-55142-a2013e-1.580047/t-05-1.583941/f-005-1.583942/a-418-1.584054/a-419-1.584049},
timestamp = {Wed, 17 Apr 2024 11:47:55 +0200},
biburl = {https://dblp.org/rec/conf/amia/PostKWRMPTASS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/PostKWRMPTASS13a,
author = {Andrew R. Post and
Tahsin M. Kur{\c{c}} and
Richie Willard and
Himanshu Rathod and
Michel Mansour and
Akshatha Kalsanka Pai and
William M. Torian and
Sanjay Agravat and
Suzanne Sturm and
Joel H. Saltz},
title = {Clinical Phenotyping with the Analytic Information Warehouse},
booktitle = {{AMIA} 2013, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 16-20, 2013},
publisher = {{AMIA}},
year = {2013},
url = {https://knowledge.amia.org/amia-55142-a2013e-1.580047/t-10-1.581994/f-010-1.581995/a-356-1.582001/a-420-1.581996},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/PostKWRMPTASS13a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/KongWTCMKPSB13,
author = {Jun Kong and
Fusheng Wang and
George Teodoro and
Lee A. D. Cooper and
Carlos Sanchez Moreno and
Tahsin M. Kur{\c{c}} and
Tony Pan and
Joel H. Saltz and
Daniel J. Brat},
editor = {Guo{-}Zheng Li and
Sunghoon Kim and
Michael Hughes and
Geoffrey J. McLachlan and
Hongye Sun and
Xiaohua Hu and
Habtom W. Ressom and
Baoyan Liu and
Michael N. Liebman},
title = {High-performance computational analysis of glioblastoma pathology
images with database support identifies molecular and survival correlates},
booktitle = {2013 {IEEE} International Conference on Bioinformatics and Biomedicine,
Shanghai, China, December 18-21, 2013},
pages = {229--236},
publisher = {{IEEE} Computer Society},
year = {2013},
url = {https://doi.org/10.1109/BIBM.2013.6732495},
doi = {10.1109/BIBM.2013.6732495},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/KongWTCMKPSB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/TeodoroPKKCPKS13,
author = {George Teodoro and
Tony Pan and
Tahsin M. Kur{\c{c}} and
Jun Kong and
Lee A. D. Cooper and
Norbert Podhorszki and
Scott Klasky and
Joel H. Saltz},
title = {High-throughput Analysis of Large Microscopy Image Datasets on {CPU-GPU}
Cluster Platforms},
booktitle = {27th {IEEE} International Symposium on Parallel and Distributed Processing,
{IPDPS} 2013, Cambridge, MA, USA, May 20-24, 2013},
pages = {103--114},
publisher = {{IEEE} Computer Society},
year = {2013},
url = {https://doi.org/10.1109/IPDPS.2013.11},
doi = {10.1109/IPDPS.2013.11},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ipps/TeodoroPKKCPKS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/TeodoroKKCS13,
author = {George Teodoro and
Tahsin M. Kur{\c{c}} and
Jun Kong and
Lee A. D. Cooper and
Joel H. Saltz},
title = {Comparative Performance Analysis of Intel Xeon Phi, GPU, and {CPU}},
journal = {CoRR},
volume = {abs/1311.0378},
year = {2013},
url = {http://arxiv.org/abs/1311.0378},
eprinttype = {arXiv},
eprint = {1311.0378},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/TeodoroKKCS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/CooperKGWGACPSSMKMBS12,
author = {Lee A. D. Cooper and
Jun Kong and
David A. Gutman and
Fusheng Wang and
Jingjing Gao and
Christina Appin and
Sharath R. Cholleti and
Tony Pan and
Ashish Sharma and
Lisa Scarpace and
Tom Mikkelsen and
Tahsin M. Kur{\c{c}} and
Carlos Sanchez Moreno and
Daniel J. Brat and
Joel H. Saltz},
title = {Integrated morphologic analysis for the identification and characterization
of disease subtypes},
journal = {J. Am. Medical Informatics Assoc.},
volume = {19},
number = {2},
pages = {317--323},
year = {2012},
url = {https://doi.org/10.1136/amiajnl-2011-000700},
doi = {10.1136/AMIAJNL-2011-000700},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jamia/CooperKGWGACPSSMKMBS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/pieee/CooperCFWKGWPCSKBS12,
author = {Lee A. D. Cooper and
Alexis B. Carter and
Alton B. Farris and
Fusheng Wang and
Jun Kong and
David A. Gutman and
Patrick M. Widener and
Tony C. Pan and
Sharath R. Cholleti and
Ashish Sharma and
Tahsin M. Kur{\c{c}} and
Daniel J. Brat and
Joel H. Saltz},
title = {Digital Pathology: Data-Intensive Frontier in Medical Imaging},
journal = {Proc. {IEEE}},
volume = {100},
number = {4},
pages = {991--1003},
year = {2012},
url = {https://doi.org/10.1109/JPROC.2011.2182074},
doi = {10.1109/JPROC.2011.2182074},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/pieee/CooperCFWKGWPCSKBS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/KimCKOHPNS12,
author = {Mijung Kim and
Jake Cobb and
Tahsin M. Kur{\c{c}} and
Alessandro Orso and
Mary Jean Harrold and
Andrew R. Post and
Shamkant B. Navathe and
Joel H. Saltz},
title = {Systematic Modeling, Testing, and Monitoring of Information Integrity
in Federated Ontology-driven Data Sources},
booktitle = {{AMIA} 2012, American Medical Informatics Association Annual Symposium,
Chicago, Illinois, USA, November 3-7, 2012},
publisher = {{AMIA}},
year = {2012},
url = {https://knowledge.amia.org/amia-55142-a2012a-1.636547/t-007-1.639272/f-001-1.639273/a-428-1.639915/a-429-1.639912},
timestamp = {Wed, 17 Apr 2024 11:48:03 +0200},
biburl = {https://dblp.org/rec/conf/amia/KimCKOHPNS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/KurcSTPCKGBW12,
author = {Tahsin M. Kur{\c{c}} and
Joel H. Saltz and
George Teodoro and
Tony Pan and
Lee A. D. Cooper and
Jun Kong and
David A. Gutman and
Daniel J. Brat and
Fusheng Wang},
title = {High Performance Computing for Integrative Analysis of Large Pathology
Image Datasets},
booktitle = {{AMIA} 2012, American Medical Informatics Association Annual Symposium,
Chicago, Illinois, USA, November 3-7, 2012},
publisher = {{AMIA}},
year = {2012},
url = {https://knowledge.amia.org/amia-55142-a2012a-1.636547/t-007-1.639272/f-001-1.639273/a-436-1.639891/a-437-1.639888},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/KurcSTPCKGBW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/TeodoroKPCKWS12,
author = {George Teodoro and
Tahsin M. Kur{\c{c}} and
Tony Pan and
Lee A. D. Cooper and
Jun Kong and
Patrick M. Widener and
Joel H. Saltz},
title = {Accelerating Large Scale Image Analyses on Parallel, {CPU-GPU} Equipped
Systems},
booktitle = {26th {IEEE} International Parallel and Distributed Processing Symposium,
{IPDPS} 2012, Shanghai, China, May 21-25, 2012},
pages = {1093--1104},
publisher = {{IEEE} Computer Society},
year = {2012},
url = {https://doi.org/10.1109/IPDPS.2012.101},
doi = {10.1109/IPDPS.2012.101},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ipps/TeodoroKPCKWS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/issta/KimCHKOSPMN12,
author = {Mijung Kim and
Jake Cobb and
Mary Jean Harrold and
Tahsin M. Kur{\c{c}} and
Alessandro Orso and
Joel H. Saltz and
Andrew R. Post and
Kunal Malhotra and
Shamkant B. Navathe},
editor = {Mats Per Erik Heimdahl and
Zhendong Su},
title = {Efficient regression testing of ontology-driven systems},
booktitle = {International Symposium on Software Testing and Analysis, {ISSTA}
2012, Minneapolis, MN, USA, July 15-20, 2012},
pages = {320--330},
publisher = {{ACM}},
year = {2012},
url = {https://doi.org/10.1145/2338965.2336792},
doi = {10.1145/2338965.2336792},
timestamp = {Thu, 02 Dec 2021 11:46:17 +0100},
biburl = {https://dblp.org/rec/conf/issta/KimCHKOSPMN12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1209-3314,
author = {George Teodoro and
Tony Pan and
Tahsin M. Kur{\c{c}} and
Jun Kong and
Lee A. D. Cooper and
Joel H. Saltz},
title = {Efficient Irregular Wavefront Propagation Algorithms on Hybrid {CPU-GPU}
Machines},
journal = {CoRR},
volume = {abs/1209.3314},
year = {2012},
url = {http://arxiv.org/abs/1209.3314},
eprinttype = {arXiv},
eprint = {1209.3314},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1209-3314.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1209-3332,
author = {George Teodoro and
Tony Pan and
Tahsin M. Kur{\c{c}} and
Jun Kong and
Lee A. D. Cooper and
Joel H. Saltz},
title = {High-throughput Execution of Hierarchical Analysis Pipelines on Hybrid
Cluster Platforms},
journal = {CoRR},
volume = {abs/1209.3332},
year = {2012},
url = {http://arxiv.org/abs/1209.3332},
eprinttype = {arXiv},
eprint = {1209.3332},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1209-3332.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/ForanYCHGRWKPSS11,
author = {David J. Foran and
Lin Yang and
Wenjin Chen and
Jun Hu and
Lauri A. Goodell and
Michael Reiss and
Fusheng Wang and
Tahsin M. Kur{\c{c}} and
Tony Pan and
Ashish Sharma and
Joel H. Saltz},
title = {ImageMiner: a software system for comparative analysis of tissue microarrays
using content-based image retrieval, high-performance computing, and
grid technology},
journal = {J. Am. Medical Informatics Assoc.},
volume = {18},
number = {4},
pages = {403--415},
year = {2011},
url = {https://doi.org/10.1136/amiajnl-2011-000170},
doi = {10.1136/AMIAJNL-2011-000170},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jamia/ForanYCHGRWKPSS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/pc/VydyanathanCKSS11,
author = {Naga Vydyanathan and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Tahsin M. Kur{\c{c}} and
Ponnuswamy Sadayappan and
Joel H. Saltz},
title = {Optimizing latency and throughput of application workflows on clusters},
journal = {Parallel Comput.},
volume = {37},
number = {10-11},
pages = {694--712},
year = {2011},
url = {https://doi.org/10.1016/j.parco.2010.05.003},
doi = {10.1016/J.PARCO.2010.05.003},
timestamp = {Sat, 22 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/pc/VydyanathanCKSS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tbe/KongCWGGCSPMKMSB11,
author = {Jun Kong and
Lee A. D. Cooper and
Fusheng Wang and
David A. Gutman and
Jingjing Gao and
Candace Chisolm and
Ashish Sharma and
Tony Pan and
Erwin G. Van Meir and
Tahsin M. Kur{\c{c}} and
Carlos Sanchez Moreno and
Joel H. Saltz and
Daniel J. Brat},
title = {Integrative, Multimodal Analysis of Glioblastoma Using {TCGA} Molecular
Data, Pathology Images, and Clinical Outcomes},
journal = {{IEEE} Trans. Biomed. Eng.},
volume = {58},
number = {12},
pages = {3469--3474},
year = {2011},
url = {https://doi.org/10.1109/TBME.2011.2169256},
doi = {10.1109/TBME.2011.2169256},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tbe/KongCWGGCSPMKMSB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/MohanBKPS11,
author = {Apurva Mohan and
Douglas M. Blough and
Tahsin M. Kur{\c{c}} and
Andrew R. Post and
Joel H. Saltz},
editor = {Fang{-}Xiang Wu and
Mohammed Javeed Zaki and
Shinichi Morishita and
Yi Pan and
Stephen Wong and
Anastasia Christianson and
Xiaohua Hu},
title = {Detection of Conflicts and Inconsistencies in Taxonomy-Based Authorization
Policies},
booktitle = {{IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2011, Atlanta, GA, USA, November 12-15, , 2011},
pages = {590--594},
publisher = {{IEEE} Computer Society},
year = {2011},
url = {https://doi.org/10.1109/BIBM.2011.79},
doi = {10.1109/BIBM.2011.79},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/MohanBKPS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/embc/KongCMWKSB11,
author = {Jun Kong and
Lee A. D. Cooper and
Carlos Sanchez Moreno and
Fusheng Wang and
Tahsin M. Kur{\c{c}} and
Joel H. Saltz and
Daniel J. Brat},
title = {In silico analysis of nuclei in glioblastoma using large-scale microscopy
images improves prediction of treatment response},
booktitle = {33rd Annual International Conference of the {IEEE} Engineering in
Medicine and Biology Society, {EMBC} 2011, Boston, MA, USA, August
30 - Sept. 3, 2011},
pages = {87--90},
publisher = {{IEEE}},
year = {2011},
url = {https://doi.org/10.1109/IEMBS.2011.6089903},
doi = {10.1109/IEMBS.2011.6089903},
timestamp = {Sun, 01 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/embc/KongCMWKSB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/embc/KongCKBS11,
author = {Jun Kong and
Lee A. D. Cooper and
Tahsin M. Kur{\c{c}} and
Daniel J. Brat and
Joel H. Saltz},
title = {Towards building computerized image analysis framework for nucleus
discrimination in microscopy images of diffuse glioma},
booktitle = {33rd Annual International Conference of the {IEEE} Engineering in
Medicine and Biology Society, {EMBC} 2011, Boston, MA, USA, August
30 - Sept. 3, 2011},
pages = {6605--6608},
publisher = {{IEEE}},
year = {2011},
url = {https://doi.org/10.1109/IEMBS.2011.6091629},
doi = {10.1109/IEMBS.2011.6091629},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/embc/KongCKBS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/CooperKWKMBS11,
author = {Lee A. D. Cooper and
Jun Kong and
Fusheng Wang and
Tahsin M. Kur{\c{c}} and
Carlos Sanchez Moreno and
Daniel J. Brat and
Joel H. Saltz},
title = {Morphological signatures and genomic correlates in glioblastoma},
booktitle = {Proceedings of the 8th {IEEE} International Symposium on Biomedical
Imaging: From Nano to Macro, {ISBI} 2011, March 30 - April 2, 2011,
Chicago, Illinois, {USA}},
pages = {1624--1627},
publisher = {{IEEE}},
year = {2011},
url = {https://doi.org/10.1109/ISBI.2011.5872714},
doi = {10.1109/ISBI.2011.5872714},
timestamp = {Wed, 04 Oct 2023 17:01:25 +0200},
biburl = {https://dblp.org/rec/conf/isbi/CooperKWKMBS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/KongCWCMKWBS11,
author = {Jun Kong and
Lee A. D. Cooper and
Fusheng Wang and
Candace Chisolm and
Carlos Sanchez Moreno and
Tahsin M. Kur{\c{c}} and
Patrick M. Widener and
Daniel J. Brat and
Joel H. Saltz},
title = {A comprehensive framework for classification of nuclei in digital
microscopy imaging: An application to diffuse gliomas},
booktitle = {Proceedings of the 8th {IEEE} International Symposium on Biomedical
Imaging: From Nano to Macro, {ISBI} 2011, March 30 - April 2, 2011,
Chicago, Illinois, {USA}},
pages = {2128--2131},
publisher = {{IEEE}},
year = {2011},
url = {https://doi.org/10.1109/ISBI.2011.5872833},
doi = {10.1109/ISBI.2011.5872833},
timestamp = {Sun, 01 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/isbi/KongCWCMKWBS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/KongCSKBS11,
author = {Jun Kong and
Lee A. D. Cooper and
Ashish Sharma and
Tahsin M. Kur{\c{c}} and
Daniel J. Brat and
Joel H. Saltz},
editor = {Benoit M. Dawant and
David R. Haynor},
title = {A new steerable pressure force for parametric deformable models},
booktitle = {Medical Imaging 2011: Image Processing, Lake Buena Vista, Florida,
USA, February 14-16, 2011},
series = {{SPIE} Proceedings},
volume = {7962},
pages = {79623N},
publisher = {{SPIE}},
year = {2011},
url = {https://doi.org/10.1117/12.877700},
doi = {10.1117/12.877700},
timestamp = {Fri, 23 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/miip/KongCSKBS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cluster/KumarKRKMVNSDGa10,
author = {Vijay S. Kumar and
Tahsin M. Kur{\c{c}} and
Varun Ratnakar and
Jihie Kim and
Gaurang Mehta and
Karan Vahi and
Yoon{-}Ju Lee Nelson and
P. Sadayappan and
Ewa Deelman and
Yolanda Gil and
Mary W. Hall and
Joel H. Saltz},
title = {Parameterized specification, configuration and execution of data-intensive
scientific workflows},
journal = {Clust. Comput.},
volume = {13},
number = {3},
pages = {315--333},
year = {2010},
url = {https://doi.org/10.1007/s10586-010-0133-8},
doi = {10.1007/S10586-010-0133-8},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/cluster/KumarKRKMVNSDGa10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tbe/CooperKGWCPWSMFRMKMBS10,
author = {Lee A. D. Cooper and
Jun Kong and
David A. Gutman and
Fusheng Wang and
Sharath R. Cholleti and
Tony C. Pan and
Patrick M. Widener and
Ashish Sharma and
Tom Mikkelsen and
Adam E. Flanders and
Daniel L. Rubin and
Erwin G. Van Meir and
Tahsin M. Kur{\c{c}} and
Carlos Sanchez Moreno and
Daniel J. Brat and
Joel H. Saltz},
title = {An Integrative Approach for In Silico Glioma Research},
journal = {{IEEE} Trans. Biomed. Eng.},
volume = {57},
number = {10},
pages = {2617--2621},
year = {2010},
url = {https://doi.org/10.1109/TBME.2010.2060338},
doi = {10.1109/TBME.2010.2060338},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tbe/CooperKGWCPWSMFRMKMBS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dils/WangKWPKCGSCK10,
author = {Fusheng Wang and
Tahsin M. Kur{\c{c}} and
Patrick M. Widener and
Tony Pan and
Jun Kong and
Lee A. D. Cooper and
David A. Gutman and
Ashish Sharma and
Sharath R. Cholleti and
Vijay Kumar},
editor = {Patrick Lambrix and
Graham J. L. Kemp},
title = {High-Performance Systems for in Silico Microscopy Imaging Studies},
booktitle = {Data Integration in the Life Sciences, 7th International Conference,
{DILS} 2010, Gothenburg, Sweden, August 25-27, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6254},
pages = {3--18},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-15120-0\_2},
doi = {10.1007/978-3-642-15120-0\_2},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/dils/WangKWPKCGSCK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icassp/KongCSKBS10,
author = {Jun Kong and
Lee A. D. Cooper and
Ashish Sharma and
Tahsin M. Kur{\c{c}} and
Daniel J. Brat and
Joel H. Saltz},
title = {Texture based image recognition in microscopy images of diffuse gliomas
with multi-class gentle boosting mechanism},
booktitle = {Proceedings of the {IEEE} International Conference on Acoustics, Speech,
and Signal Processing, {ICASSP} 2010, 14-19 March 2010, Sheraton Dallas
Hotel, Dallas, Texas, {USA}},
pages = {457--460},
publisher = {{IEEE}},
year = {2010},
url = {https://doi.org/10.1109/ICASSP.2010.5495724},
doi = {10.1109/ICASSP.2010.5495724},
timestamp = {Fri, 23 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icassp/KongCSKBS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/para/WidenerKCWYHKCCKSPSF10,
author = {Patrick M. Widener and
Tahsin M. Kur{\c{c}} and
Wenjin Chen and
Fusheng Wang and
Lin Yang and
Jun Hu and
Vijay Kumar and
Vicky Chu and
Lee A. D. Cooper and
Jun Kong and
Ashish Sharma and
Tony Pan and
Joel H. Saltz and
David J. Foran},
editor = {Kristj{\'{a}}n J{\'{o}}nasson},
title = {High Performance Computing Techniques for Scaling Image Analysis Workflows},
booktitle = {Applied Parallel and Scientific Computing - 10th International Conference,
{PARA} 2010, Reykjav{\'{\i}}k, Iceland, June 6-9, 2010, Revised
Selected Papers, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {7134},
pages = {67--77},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-28145-7\_7},
doi = {10.1007/978-3-642-28145-7\_7},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/para/WidenerKCWYHKCCKSPSF10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijhpca/KurcHKLSPOEPNGDHS09,
author = {Tahsin M. Kur{\c{c}} and
Shannon Hastings and
Vijay S. Kumar and
Stephen Langella and
Ashish Sharma and
Tony Pan and
Scott Oster and
David Ervin and
Justin Permar and
Sivaramakrishnan Narayanan and
Yolanda Gil and
Ewa Deelman and
Mary W. Hall and
Joel H. Saltz},
title = {{HPC} and Grid Computing for Integrative Biomedical Research},
journal = {Int. J. High Perform. Comput. Appl.},
volume = {23},
number = {3},
pages = {252--264},
year = {2009},
url = {https://doi.org/10.1177/1094342009106192},
doi = {10.1177/1094342009106192},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ijhpca/KurcHKLSPOEPNGDHS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jdi/SharmaPCGKS09,
author = {Ashish Sharma and
Tony Pan and
Berkant Barla Cambazoglu and
Metin N. Gurcan and
Tahsin M. Kur{\c{c}} and
Joel H. Saltz},
title = {VirtualPACS - {A} Federating Gateway to Access Remote Image Data Resources
over the Grid},
journal = {J. Digit. Imaging},
volume = {22},
number = {1},
pages = {1--10},
year = {2009},
url = {https://doi.org/10.1007/s10278-007-9074-z},
doi = {10.1007/S10278-007-9074-Z},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jdi/SharmaPCGKS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tpds/VydyanathanKSCKSS09,
author = {Nagavijayalakshmi Vydyanathan and
Sriram Krishnamoorthy and
Gerald M. Sabin and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Tahsin M. Kur{\c{c}} and
P. Sadayappan and
Joel H. Saltz},
title = {An Integrated Approach to Locality-Conscious Processor Allocation
and Scheduling of Mixed-Parallel Applications},
journal = {{IEEE} Trans. Parallel Distributed Syst.},
volume = {20},
number = {8},
pages = {1158--1172},
year = {2009},
url = {https://doi.org/10.1109/TPDS.2008.219},
doi = {10.1109/TPDS.2008.219},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tpds/VydyanathanKSCKSS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/CamerlengoOYPHHTLLPK09,
author = {Terry Camerlengo and
Hatice Gulcin Ozer and
Pearlly Yan and
Jeffrey D. Parvin and
Tim Hui{-}Ming Huang and
Kun Huang and
Mingxiang Teng and
Lang Li and
Yunlong Liu and
Francisco Perez and
Tahsin M. Kur{\c{c}}},
title = {Enabling Data Analysis on High-Throughput Data in Large Data Depository
Using Web-Based Analysis Platform - {A} Case Study on Integrating
{QUEST} with GenePattern in Epigenetics Research},
booktitle = {2009 {IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2009, Washington, DC, USA, November 1-4, 2009, Proceedings},
pages = {392--395},
publisher = {{IEEE} Computer Society},
year = {2009},
url = {https://doi.org/10.1109/BIBM.2009.84},
doi = {10.1109/BIBM.2009.84},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/CamerlengoOYPHHTLLPK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hpdc/KumarSMVDRKGHKS09,
author = {Vijay S. Kumar and
P. Sadayappan and
Gaurang Mehta and
Karan Vahi and
Ewa Deelman and
Varun Ratnakar and
Jihie Kim and
Yolanda Gil and
Mary W. Hall and
Tahsin M. Kur{\c{c}} and
Joel H. Saltz},
editor = {Dieter Kranzlm{\"{u}}ller and
Arndt Bode and
Heinz{-}Gerd Hegering and
Henri Casanova and
Michael Gerndt},
title = {An integrated framework for performance-based optimization of scientific
workflows},
booktitle = {Proceedings of the 18th {ACM} International Symposium on High Performance
Distributed Computing, {HPDC} 2009, Garching, Germany, June 11-13,
2009},
pages = {177--186},
publisher = {{ACM}},
year = {2009},
url = {https://doi.org/10.1145/1551609.1551638},
doi = {10.1145/1551609.1551638},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/hpdc/KumarSMVDRKGHKS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/KumarKSAKM09,
author = {Vijay S. Kumar and
Tahsin M. Kur{\c{c}} and
Joel H. Saltz and
Ghaleb Abdulla and
Scott R. Kohn and
Celeste Matarazzo},
title = {Architectural implications for spatial object association algorithms},
booktitle = {23rd {IEEE} International Symposium on Parallel and Distributed Processing,
{IPDPS} 2009, Rome, Italy, May 23-29, 2009},
pages = {1--12},
publisher = {{IEEE}},
year = {2009},
url = {https://doi.org/10.1109/IPDPS.2009.5161078},
doi = {10.1109/IPDPS.2009.5161078},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ipps/KumarKSAKM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/ForanYTCHKFS09,
author = {David J. Foran and
Lin Yang and
Oncel Tuzel and
Wenjin Chen and
Jun Hu and
Tahsin M. Kur{\c{c}} and
Renato Ferreira and
Joel H. Saltz},
title = {A caGrid-Enabled, Learning Based Image Segmentation Method for Histopathology
Specimens},
booktitle = {Proceedings of the 2009 {IEEE} International Symposium on Biomedical
Imaging: From Nano to Macro, Boston, MA, USA, June 28 - July 1, 2009},
pages = {1306--1309},
publisher = {{IEEE}},
year = {2009},
url = {https://doi.org/10.1109/ISBI.2009.5193304},
doi = {10.1109/ISBI.2009.5193304},
timestamp = {Wed, 04 Oct 2023 17:01:25 +0200},
biburl = {https://dblp.org/rec/conf/isbi/ForanYTCHKFS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sac/NarayananCKS09,
author = {Sivaramakrishnan Narayanan and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Tahsin M. Kur{\c{c}} and
Joel H. Saltz},
editor = {Sung Y. Shin and
Sascha Ossowski},
title = {Parallel materialization of large ABoxes},
booktitle = {Proceedings of the 2009 {ACM} Symposium on Applied Computing (SAC),
Honolulu, Hawaii, USA, March 9-12, 2009},
pages = {1257--1261},
publisher = {{ACM}},
year = {2009},
url = {https://doi.org/10.1145/1529282.1529564},
doi = {10.1145/1529282.1529564},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/sac/NarayananCKS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/computer/KumarNKKGS08,
author = {Vijay S. Kumar and
Sivaramakrishnan Narayanan and
Tahsin M. Kur{\c{c}} and
Jun Kong and
Metin N. Gurcan and
Joel H. Saltz},
title = {Analysis and Semantic Querying in Large Biomedical Image Datasets},
journal = {Computer},
volume = {41},
number = {4},
pages = {52--59},
year = {2008},
url = {https://doi.org/10.1109/MC.2008.108},
doi = {10.1109/MC.2008.108},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/computer/KumarNKKGS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/computer/SaltzKHLOESPGPFPCCLOMFMBSS08,
author = {Joel H. Saltz and
Tahsin M. Kur{\c{c}} and
Shannon Hastings and
Stephen Langella and
Scott Oster and
David Ervin and
Ashish Sharma and
Tony Pan and
Metin N. Gurcan and
Justin Permar and
Renato Ferreira and
Philip R. O. Payne and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Enrico Caserta and
Gustavo Leone and
Michael C. Ostrowski and
Ravi K. Madduri and
Ian T. Foster and
Subhasree Madhavan and
Kenneth H. Buetow and
Krishnakant Shanbhag and
Eliot L. Siegel},
title = {e-Science, caGrid, and Translational Biomedical Research},
journal = {Computer},
volume = {41},
number = {11},
pages = {58--66},
year = {2008},
url = {https://doi.org/10.1109/MC.2008.459},
doi = {10.1109/MC.2008.459},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/computer/SaltzKHLOESPGPFPCCLOMFMBSS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijpp/TeodoroTFKMNPS08,
author = {George Teodoro and
Tulio Tavares and
Renato Ferreira and
Tahsin M. Kur{\c{c}} and
Wagner Meira Jr. and
Dorgival Olavo Guedes Neto and
Tony Pan and
Joel H. Saltz},
title = {A Run-time System for Efficient Execution of Scientific Workflows
on Distributed Environments},
journal = {Int. J. Parallel Program.},
volume = {36},
number = {2},
pages = {250--266},
year = {2008},
url = {https://doi.org/10.1007/s10766-007-0068-8},
doi = {10.1007/S10766-007-0068-8},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ijpp/TeodoroTFKMNPS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/OsterLHEMPKSCSFS08,
author = {Scott Oster and
Stephen Langella and
Shannon Hastings and
David Ervin and
Ravi K. Madduri and
Joshua Phillips and
Tahsin M. Kur{\c{c}} and
Frank Siebenlist and
Peter A. Covitz and
Krishnakant Shanbhag and
Ian T. Foster and
Joel H. Saltz},
title = {Model Formulation: caGrid 1.0: An Enterprise Grid Infrastructure for
Biomedical Research},
journal = {J. Am. Medical Informatics Assoc.},
volume = {15},
number = {2},
pages = {138--149},
year = {2008},
url = {https://doi.org/10.1197/jamia.M2522},
doi = {10.1197/JAMIA.M2522},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jamia/OsterLHEMPKSCSFS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/LangellaHOPSPECKS08,
author = {Stephen Langella and
Shannon Hastings and
Scott Oster and
Tony Pan and
Ashish Sharma and
Justin Permar and
David Ervin and
Berkant Barla Cambazoglu and
Tahsin M. Kur{\c{c}} and
Joel H. Saltz},
title = {Model Formulation: Sharing Data and Analytical Resources Securely
in a Biomedical Research Grid Environment},
journal = {J. Am. Medical Informatics Assoc.},
volume = {15},
number = {3},
pages = {363--373},
year = {2008},
url = {https://doi.org/10.1197/jamia.M2662},
doi = {10.1197/JAMIA.M2662},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jamia/LangellaHOPSPECKS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/MosaligantiPRSCGSIMKBWLSH08,
author = {Kishore Mosaliganti and
Tony Pan and
Randall Ridgway and
Richard Sharp and
Lee A. D. Cooper and
Alex Gulacy and
Ashish Sharma and
M. Okan Irfanoglu and
Raghu Machiraju and
Tahsin M. Kur{\c{c}} and
Alain de Bruin and
Pamela Wenzel and
Gustavo Leone and
Joel H. Saltz and
Kun Huang},
title = {An imaging workflow for characterizing phenotypical change in large
histological mouse model datasets},
journal = {J. Biomed. Informatics},
volume = {41},
number = {6},
pages = {863--873},
year = {2008},
url = {https://doi.org/10.1016/j.jbi.2008.03.013},
doi = {10.1016/J.JBI.2008.03.013},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/MosaligantiPRSCGSIMKBWLSH08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/titb/KumarRKCPCLMS08,
author = {Vijay S. Kumar and
Benjamin Rutt and
Tahsin M. Kur{\c{c}} and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Tony C. Pan and
Sunny K. Chow and
Stephan Lamont and
Maryann E. Martone and
Joel H. Saltz},
title = {Large-Scale Biomedical Image Analysis in Grid Environments},
journal = {{IEEE} Trans. Inf. Technol. Biomed.},
volume = {12},
number = {2},
pages = {154--161},
year = {2008},
url = {https://doi.org/10.1109/TITB.2007.908466},
doi = {10.1109/TITB.2007.908466},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/titb/KumarRKCPCLMS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/healthgrid/SaltzHLOKPFPGESPPBSMFSMH08,
author = {Joel H. Saltz and
Shannon Hastings and
Stephen Langella and
Scott Oster and
Tahsin M. Kur{\c{c}} and
Philip R. O. Payne and
Renato Ferreira and
Beth Plale and
Carole A. Goble and
David Ervin and
Ashish Sharma and
Tony Pan and
Justin Permar and
Peter Brezany and
Frank Siebenlist and
Ravi K. Madduri and
Ian T. Foster and
Krishnakant Shanbhag and
Charlie Mead and
Neil P. Chue Hong},
editor = {Tony Solomonides and
Jonathan C. Silverstein and
Joel H. Saltz and
Yannick Legr{\'{e}} and
Mary Kratz and
Ian T. Foster and
Vincent Breton and
J. Robert Beck},
title = {A Roadmap for caGrid, an Enterprise Grid Architecture for Biomedical
Research},
booktitle = {Global Healthgrid: e-Science Meets Biomedical Informatics - Proceedings
of HealthGrid 2008, Chicago, IL, USA, 2-4 June, 2008},
series = {Studies in Health Technology and Informatics},
volume = {138},
pages = {224--237},
publisher = {{IOS} Press},
year = {2008},
url = {http://www.booksonline.iospress.nl/Content/View.aspx?piid=9174},
timestamp = {Mon, 04 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/healthgrid/SaltzHLOKPFPGESPPBSMFSMH08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hpdc/KhannaCKSSKF08,
author = {Gaurav Khanna and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Tahsin M. Kur{\c{c}} and
P. Sadayappan and
Joel H. Saltz and
Rajkumar Kettimuthu and
Ian T. Foster},
editor = {Manish Parashar and
Karsten Schwan and
Jon B. Weissman and
Domenico Laforenza},
title = {Multi-hop path splitting and multi-pathing optimizations for data
transfers over shared wide-area networks using gridFTP},
booktitle = {Proceedings of the 17th International Symposium on High-Performance
Distributed Computing {(HPDC-17} 2008), 23-27 June 2008, Boston, MA,
{USA}},
pages = {225--226},
publisher = {{ACM}},
year = {2008},
url = {https://doi.org/10.1145/1383422.1383457},
doi = {10.1145/1383422.1383457},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/hpdc/KhannaCKSSKF08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icpp/VydyanathanCKSS08,
author = {Nagavijayalakshmi Vydyanathan and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Tahsin M. Kur{\c{c}} and
P. Sadayappan and
Joel H. Saltz},
title = {A Duplication Based Algorithm for Optimizing Latency Under Throughput
Constraints for Streaming Workflows},
booktitle = {2008 International Conference on Parallel Processing, {ICPP} 2008,
September 8-12, 2008, Portland, Oregon, {USA}},
pages = {254--261},
publisher = {{IEEE} Computer Society},
year = {2008},
url = {https://doi.org/10.1109/ICPP.2008.68},
doi = {10.1109/ICPP.2008.68},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icpp/VydyanathanCKSS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/KhannaCKKSS08,
author = {Gaurav Khanna and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Tahsin M. Kur{\c{c}} and
Rajkumar Kettimuthu and
P. Sadayappan and
Joel H. Saltz},
title = {A dynamic scheduling approach for coordinated wide-area data transfers
using GridFTP},
booktitle = {22nd {IEEE} International Symposium on Parallel and Distributed Processing,
{IPDPS} 2008, Miami, Florida USA, April 14-18, 2008},
pages = {1--12},
publisher = {{IEEE}},
year = {2008},
url = {https://doi.org/10.1109/IPDPS.2008.4536325},
doi = {10.1109/IPDPS.2008.4536325},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ipps/KhannaCKKSS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/KumarHKGKDRS08,
author = {Vijay S. Kumar and
Mary W. Hall and
Jihie Kim and
Yolanda Gil and
Tahsin M. Kur{\c{c}} and
Ewa Deelman and
Varun Ratnakar and
Joel H. Saltz},
title = {Designing and parameterizing a workflow for optimization: {A} case
study in biomedical imaging},
booktitle = {22nd {IEEE} International Symposium on Parallel and Distributed Processing,
{IPDPS} 2008, Miami, Florida USA, April 14-18, 2008},
pages = {1--5},
publisher = {{IEEE}},
year = {2008},
url = {https://doi.org/10.1109/IPDPS.2008.4536411},
doi = {10.1109/IPDPS.2008.4536411},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ipps/KumarHKGKDRS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/SaltzOHLFPSEPCK08,
author = {Joel H. Saltz and
Scott Oster and
Shannon Hastings and
Stephen Langella and
Renato Ferreira and
Justin Permar and
Ashish Sharma and
David Ervin and
Tony Pan and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Tahsin M. Kur{\c{c}}},
title = {Translational research design templates, Grid computing, and {HPC}},
booktitle = {22nd {IEEE} International Symposium on Parallel and Distributed Processing,
{IPDPS} 2008, Miami, Florida USA, April 14-18, 2008},
pages = {1--15},
publisher = {{IEEE}},
year = {2008},
url = {https://doi.org/10.1109/IPDPS.2008.4536089},
doi = {10.1109/IPDPS.2008.4536089},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ipps/SaltzOHLFPSEPCK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/KhannaCKKSFS08,
author = {Gaurav Khanna and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Tahsin M. Kur{\c{c}} and
Rajkumar Kettimuthu and
P. Sadayappan and
Ian T. Foster and
Joel H. Saltz},
title = {Using overlays for efficient data transfer over shared wide-area networks},
booktitle = {Proceedings of the {ACM/IEEE} Conference on High Performance Computing,
{SC} 2008, November 15-21, 2008, Austin, Texas, {USA}},
pages = {47},
publisher = {{IEEE/ACM}},
year = {2008},
url = {https://doi.org/10.1109/SC.2008.5213292},
doi = {10.1109/SC.2008.5213292},
timestamp = {Wed, 16 Oct 2019 14:14:57 +0200},
biburl = {https://dblp.org/rec/conf/sc/KhannaCKKSFS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/concurrency/WoodsCHKSK07,
author = {Brent Woods and
Bradley D. Clymer and
Johannes T. Heverhagen and
Michael V. Knopp and
Joel H. Saltz and
Tahsin M. Kur{\c{c}}},
title = {Parallel four-dimensional Haralick texture analysis for disk-resident
image datasets},
journal = {Concurr. Comput. Pract. Exp.},
volume = {19},
number = {1},
pages = {65--87},
year = {2007},
url = {https://doi.org/10.1002/cpe.1073},
doi = {10.1002/CPE.1073},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/concurrency/WoodsCHKSK07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/grid/HastingsOLEKS07,
author = {Shannon Hastings and
Scott Oster and
Stephen Langella and
David Ervin and
Tahsin M. Kur{\c{c}} and
Joel H. Saltz},
title = {Introduce: An Open Source Toolkit for Rapid Development of Strongly
Typed Grid Services},
journal = {J. Grid Comput.},
volume = {5},
number = {4},
pages = {407--427},
year = {2007},
url = {https://doi.org/10.1007/s10723-007-9074-8},
doi = {10.1007/S10723-007-9074-8},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/grid/HastingsOLEKS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jdi/GurcanPSKOLHSSS07,
author = {Metin N. Gurcan and
Tony Pan and
Ashish Sharma and
Tahsin M. Kur{\c{c}} and
Scott Oster and
Stephen Langella and
Shannon Hastings and
Khan M. Siddiqui and
Eliot L. Siegel and
Joel H. Saltz},
title = {GridIMAGE: {A} Novel Use of Grid Computing to Support Interactive
Human and Computer-Assisted Detection Decision Support},
journal = {J. Digit. Imaging},
volume = {20},
number = {2},
pages = {160--171},
year = {2007},
url = {https://doi.org/10.1007/s10278-007-9020-0},
doi = {10.1007/S10278-007-9020-0},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jdi/GurcanPSKOLHSSS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jpdc/AykanatCFK07,
author = {Cevdet Aykanat and
Berkant Barla Cambazoglu and
Ferit Findik and
Tahsin M. Kur{\c{c}}},
title = {Adaptive decomposition and remapping algorithms for object-space-parallel
direct volume rendering of unstructured grids},
journal = {J. Parallel Distributed Comput.},
volume = {67},
number = {1},
pages = {77--99},
year = {2007},
url = {https://doi.org/10.1016/j.jpdc.2006.05.005},
doi = {10.1016/J.JPDC.2006.05.005},
timestamp = {Sat, 22 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jpdc/AykanatCFK07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/pc/AndradeKSS07,
author = {Henrique Andrade and
Tahsin M. Kur{\c{c}} and
Alan Sussman and
Joel H. Saltz},
title = {Active semantic caching to optimize multidimensional data analysis
in parallel and distributed environments},
journal = {Parallel Comput.},
volume = {33},
number = {7-8},
pages = {497--520},
year = {2007},
url = {https://doi.org/10.1016/j.parco.2007.03.001},
doi = {10.1016/J.PARCO.2007.03.001},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/pc/AndradeKSS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/LangellaOHSPEPKS07,
author = {Stephen Langella and
Scott Oster and
Shannon Hastings and
Frank Siebenlist and
Joshua Phillips and
David Ervin and
Justin Permar and
Tahsin M. Kur{\c{c}} and
Joel H. Saltz},
title = {The Cancer Biomedical Informatics Grid (caBIG\({}^{\mbox{{\texttrademark}}}\))
Security Infrastructure},
booktitle = {{AMIA} 2007, American Medical Informatics Association Annual Symposium,
Chicago, IL, USA, November 10-14, 2007},
publisher = {{AMIA}},
year = {2007},
url = {https://knowledge.amia.org/amia-55142-a2007a-1.623841/t-001-1.624626/f-001-1.624627/a-081-1.624885/a-082-1.624882},
timestamp = {Wed, 17 Apr 2024 11:48:14 +0200},
biburl = {https://dblp.org/rec/conf/amia/LangellaOHSPEPKS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/OsterLHEMKSCSFS07,
author = {Scott Oster and
Stephen Langella and
Shannon Hastings and
David Ervin and
Ravi K. Madduri and
Tahsin M. Kur{\c{c}} and
Frank Siebenlist and
Peter A. Covitz and
Krishnakant Shanbhag and
Ian T. Foster and
Joel H. Saltz},
title = {caGrid 1.0: {A} Grid Enterprise Architecture for Cancer Research},
booktitle = {{AMIA} 2007, American Medical Informatics Association Annual Symposium,
Chicago, IL, USA, November 10-14, 2007},
publisher = {{AMIA}},
year = {2007},
url = {https://knowledge.amia.org/amia-55142-a2007a-1.623841/t-001-1.624626/f-001-1.624627/a-109-1.624801/a-110-1.624798},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/OsterLHEMKSCSFS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ccgrid/TavaresTKFNMCHOLS07,
author = {Tulio Tavares and
George Teodoro and
Tahsin M. Kur{\c{c}} and
Renato Ferreira and
Dorgival Olavo Guedes Neto and
Wagner Meira Jr. and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Shannon Hastings and
Scott Oster and
Stephen Langella and
Joel H. Saltz},
title = {An Efficient and Reliable Scientific Workflow System},
booktitle = {Seventh {IEEE} International Symposium on Cluster Computing and the
Grid (CCGrid 2007), 14-17 May 2007, Rio de Janeiro, Brazil},
pages = {445--452},
publisher = {{IEEE} Computer Society},
year = {2007},
url = {https://doi.org/10.1109/CCGRID.2007.20},
doi = {10.1109/CCGRID.2007.20},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ccgrid/TavaresTKFNMCHOLS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cluster/KumarKKCGS07,
author = {Vijay S. Kumar and
Tahsin M. Kur{\c{c}} and
Jun Kong and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Metin N. Gurcan and
Joel H. Saltz},
title = {Performance vs. accuracy trade-offs for large-scale image analysis
applications},
booktitle = {Proceedings of the 2007 {IEEE} International Conference on Cluster
Computing, 17-20 September 2007, Austin, Texas, {USA}},
pages = {100--109},
publisher = {{IEEE} Computer Society},
year = {2007},
url = {https://doi.org/10.1109/CLUSTR.2007.4629222},
doi = {10.1109/CLUSTR.2007.4629222},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cluster/KumarKKCGS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/europar/VydyanathanCKSS07,
author = {Nagavijayalakshmi Vydyanathan and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Tahsin M. Kur{\c{c}} and
P. Sadayappan and
Joel H. Saltz},
editor = {Anne{-}Marie Kermarrec and
Luc Boug{\'{e}} and
Thierry Priol},
title = {Toward Optimizing Latency Under Throughput Constraints for Application
Workflows on Clusters},
booktitle = {Euro-Par 2007, Parallel Processing, 13th International Euro-Par Conference,
Rennes, France, August 28-31, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4641},
pages = {173--183},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-74466-5\_20},
doi = {10.1007/978-3-540-74466-5\_20},
timestamp = {Tue, 14 May 2019 10:00:46 +0200},
biburl = {https://dblp.org/rec/conf/europar/VydyanathanCKSS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/europar/0002CKSS07,
author = {Gaurav Khanna and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Tahsin M. Kur{\c{c}} and
P. Sadayappan and
Joel H. Saltz},
editor = {Anne{-}Marie Kermarrec and
Luc Boug{\'{e}} and
Thierry Priol},
title = {Scheduling File Transfers for Data-Intensive Jobs on Heterogeneous
Clusters},
booktitle = {Euro-Par 2007, Parallel Processing, 13th International Euro-Par Conference,
Rennes, France, August 28-31, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4641},
pages = {214--223},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-74466-5\_24},
doi = {10.1007/978-3-540-74466-5\_24},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/europar/0002CKSS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/grid/WengCKAS07,
author = {Li Weng and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Tahsin M. Kur{\c{c}} and
Gagan Agrawal and
Joel H. Saltz},
title = {Optimizing multiple queries on scientific datasets with partial replicas},
booktitle = {8th {IEEE/ACM} International Conference on Grid Computing {(GRID}
2007), September 19-21, 2007, Austin, Texas, USA, Proceedings},
pages = {259--266},
publisher = {{IEEE} Computer Society},
year = {2007},
url = {https://doi.org/10.1109/GRID.2007.4354141},
doi = {10.1109/GRID.2007.4354141},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/grid/WengCKAS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccS/KurcZPKWCS07,
author = {Tahsin M. Kur{\c{c}} and
Xi Zhang and
Manish Parashar and
Hector Klie and
Mary F. Wheeler and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Joel H. Saltz},
editor = {Yong Shi and
G. Dick van Albada and
Jack J. Dongarra and
Peter M. A. Sloot},
title = {Dynamic Data-Driven Systems Approach for Simulation Based Optimizations},
booktitle = {Computational Science - {ICCS} 2007, 7th International Conference
Beijing, China, May 27-30, 2007, Proceedings, Part {I}},
series = {Lecture Notes in Computer Science},
volume = {4487},
pages = {1213--1221},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-72584-8\_158},
doi = {10.1007/978-3-540-72584-8\_158},
timestamp = {Tue, 08 Nov 2022 08:34:32 +0100},
biburl = {https://dblp.org/rec/conf/iccS/KurcZPKWCS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/BansalCCCDGHKKLNNSSV07,
author = {Bhupesh Bansal and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Jacqueline Chame and
Chun Chen and
Ewa Deelman and
Yolanda Gil and
Mary W. Hall and
Vijay S. Kumar and
Tahsin M. Kur{\c{c}} and
Kristina Lerman and
Aiichiro Nakano and
Yoon{-}Ju Lee Nelson and
Joel H. Saltz and
Ashish Sharma and
Priya Vashishta},
title = {Intelligent Optimization of Parallel and Distributed Applications},
booktitle = {21th International Parallel and Distributed Processing Symposium {(IPDPS}
2007), Proceedings, 26-30 March 2007, Long Beach, California, {USA}},
pages = {1--6},
publisher = {{IEEE}},
year = {2007},
url = {https://doi.org/10.1109/IPDPS.2007.370490},
doi = {10.1109/IPDPS.2007.370490},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ipps/BansalCCCDGHKKLNNSSV07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/GhotingBGTZPKS07,
author = {Amol Ghoting and
Gregory Buehrer and
Matthew Goyder and
Shirish Tatikonda and
Xi Zhang and
Srinivasan Parthasarathy and
Tahsin M. Kur{\c{c}} and
Joel H. Saltz},
title = {Knowledge and Cache Conscious Algorithm Design and Systems Support
for Data Mining Algorithms},
booktitle = {21th International Parallel and Distributed Processing Symposium {(IPDPS}
2007), Proceedings, 26-30 March 2007, Long Beach, California, {USA}},
pages = {1--6},
publisher = {{IEEE}},
year = {2007},
url = {https://doi.org/10.1109/IPDPS.2007.370500},
doi = {10.1109/IPDPS.2007.370500},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ipps/GhotingBGTZPKS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ppopp/BuehrerPTKS07,
author = {Gregory Buehrer and
Srinivasan Parthasarathy and
Shirish Tatikonda and
Tahsin M. Kur{\c{c}} and
Joel H. Saltz},
editor = {Katherine A. Yelick and
John M. Mellor{-}Crummey},
title = {Toward terabyte pattern mining: an architecture-conscious solution},
booktitle = {Proceedings of the 12th {ACM} {SIGPLAN} Symposium on Principles and
Practice of Parallel Programming, {PPOPP} 2007, San Jose, California,
USA, March 14-17, 2007},
pages = {2--12},
publisher = {{ACM}},
year = {2007},
url = {https://doi.org/10.1145/1229428.1229432},
doi = {10.1145/1229428.1229432},
timestamp = {Sun, 12 Jun 2022 19:46:08 +0200},
biburl = {https://dblp.org/rec/conf/ppopp/BuehrerPTKS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SaltzOHLKSKMSC06,
author = {Joel H. Saltz and
Scott Oster and
Shannon Hastings and
Stephen Langella and
Tahsin M. Kur{\c{c}} and
William Sanchez and
Manav Kher and
Arumani Manisundaram and
Krishnakant Shanbhag and
Peter A. Covitz},
title = {caGrid: design and implementation of the core architecture of the
cancer biomedical informatics grid},
journal = {Bioinform.},
volume = {22},
number = {15},
pages = {1910--1916},
year = {2006},
url = {https://doi.org/10.1093/bioinformatics/btl272},
doi = {10.1093/BIOINFORMATICS/BTL272},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SaltzOHLKSKMSC06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ewc/KlieBGWSSPCSK06,
author = {Hector Klie and
Wolfgang Bangerth and
X. Gai and
Mary F. Wheeler and
Paul L. Stoffa and
Mrinal K. Sen and
Manish Parashar and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Joel H. Saltz and
Tahsin M. Kur{\c{c}}},
title = {Models, methods and middleware for grid-enabled multiphysics oil reservoir
management},
journal = {Eng. Comput.},
volume = {22},
number = {3-4},
pages = {349--370},
year = {2006},
url = {https://doi.org/10.1007/s00366-006-0035-9},
doi = {10.1007/S00366-006-0035-9},
timestamp = {Thu, 16 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ewc/KlieBGWSSPCSK06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijhpca/ZhangRCKSSS06,
author = {Xi Zhang and
Benjamin Rutt and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Tahsin M. Kur{\c{c}} and
Paul L. Stoffa and
Mrinal K. Sen and
Joel H. Saltz},
title = {Supporting Scalable and Distributed Data Subsetting and Aggregation
in Large-Scale Seismic Data Analysis},
journal = {Int. J. High Perform. Comput. Appl.},
volume = {20},
number = {3},
pages = {423--438},
year = {2006},
url = {https://doi.org/10.1177/1094342006067471},
doi = {10.1177/1094342006067471},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ijhpca/ZhangRCKSSS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/KurcJJLOHHCECS06,
author = {Tahsin M. Kur{\c{c}} and
Daniel Janies and
Andrew D. Johnson and
Stephen Langella and
Scott Oster and
Shannon Hastings and
Farhat Habib and
Terry Camerlengo and
David Ervin and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Joel H. Saltz},
title = {Application of Information Technology: An XML-based System for Synthesis
of Data from Disparate Databases},
journal = {J. Am. Medical Informatics Assoc.},
volume = {13},
number = {3},
pages = {289--301},
year = {2006},
url = {https://doi.org/10.1197/jamia.M1848},
doi = {10.1197/JAMIA.M1848},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/KurcJJLOHHCECS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cbms/LangellaOHSKS06,
author = {Stephen Langella and
Scott Oster and
Shannon Hastings and
Frank Siebenlist and
Tahsin M. Kur{\c{c}} and
Joel H. Saltz},
title = {Dorian: Grid Service Infrastructure for Identity Management and Federation},
booktitle = {19th {IEEE} International Symposium on Computer-Based Medical Systems
{(CBMS} 2006), 22-23 June 2006, Salt Lake City, Utah, {USA}},
pages = {756--761},
publisher = {{IEEE} Computer Society},
year = {2006},
url = {https://doi.org/10.1109/CBMS.2006.80},
doi = {10.1109/CBMS.2006.80},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cbms/LangellaOHSKS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cikm/TatikondaPK06,
author = {Shirish Tatikonda and
Srinivasan Parthasarathy and
Tahsin M. Kur{\c{c}}},
editor = {Philip S. Yu and
Vassilis J. Tsotras and
Edward A. Fox and
Bing Liu},
title = {{TRIPS} and {TIDES:} new algorithms for tree mining},
booktitle = {Proceedings of the 2006 {ACM} {CIKM} International Conference on Information
and Knowledge Management, Arlington, Virginia, USA, November 6-11,
2006},
pages = {455--464},
publisher = {{ACM}},
year = {2006},
url = {https://doi.org/10.1145/1183614.1183680},
doi = {10.1145/1183614.1183680},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cikm/TatikondaPK06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cluster/VydyanathanKSCKSS06,
author = {Nagavijayalakshmi Vydyanathan and
Sriram Krishnamoorthy and
Gerald Sabin and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Tahsin M. Kur{\c{c}} and
P. Sadayappan and
Joel H. Saltz},
title = {Locality Conscious Processor Allocation and Scheduling for Mixed Parallel
Applications},
booktitle = {Proceedings of the 2006 {IEEE} International Conference on Cluster
Computing, September 25-28, 2006, Barcelona, Spain},
publisher = {{IEEE} Computer Society},
year = {2006},
url = {https://doi.org/10.1109/CLUSTR.2006.311861},
doi = {10.1109/CLUSTR.2006.311861},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cluster/VydyanathanKSCKSS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hpc/CatalyurekNSKCPSHLOKGS06,
author = {{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Sivaramakrishnan Narayanan and
Olcay Sertel and
Jun Kong and
Berkant Barla Cambazoglu and
Tony Pan and
Ashish Sharma and
Shannon Hastings and
Stephen Langella and
Scott Oster and
Tahsin M. Kur{\c{c}} and
Metin Nafi G{\"{u}}rcan and
Joel H. Saltz},
editor = {Lucio Grandinetti},
title = {Service-Based Access to and Processing of Large Scientific Datasets},
booktitle = {High Performance Computing and Grids in Action - Selected Papers from
the 2006 International Advanced Research Workshop on High Performance
Computing and Grids, Cetraro, Italy, 2006},
series = {Advances in Parallel Computing},
volume = {16},
pages = {345--362},
publisher = {{IOS} Press},
year = {2006},
timestamp = {Fri, 23 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/hpc/CatalyurekNSKCPSHLOKGS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hpdc/KhannaVCKKSS06,
author = {Gaurav Khanna and
Nagavijayalakshmi Vydyanathan and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Tahsin M. Kur{\c{c}} and
Sriram Krishnamoorthy and
P. Sadayappan and
Joel H. Saltz},
title = {Task Scheduling and File Replication for Data-Intensive Jobs with
Batch-shared {I/O}},
booktitle = {Proceedings of the 15th {IEEE} International Symposium on High Performance
Distributed Computing, HPDC-15, Paris, France, June 19-23, 2006},
pages = {241--252},
publisher = {{IEEE}},
year = {2006},
url = {https://doi.org/10.1109/HPDC.2006.1652155},
doi = {10.1109/HPDC.2006.1652155},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/hpdc/KhannaVCKKSS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccS/ParasharMKTWKSV06,
author = {Manish Parashar and
Vincent Matossian and
Hector Klie and
Sunil G. Thomas and
Mary F. Wheeler and
Tahsin M. Kur{\c{c}} and
Joel H. Saltz and
Roelof Versteeg},
editor = {Vassil N. Alexandrov and
G. Dick van Albada and
Peter M. A. Sloot and
Jack J. Dongarra},
title = {Towards Dynamic Data-Driven Management of the Ruby Gulch Waste Repository},
booktitle = {Computational Science - {ICCS} 2006, 6th International Conference,
Reading, UK, May 28-31, 2006, Proceedings, Part {III}},
series = {Lecture Notes in Computer Science},
volume = {3993},
pages = {384--392},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11758532\_52},
doi = {10.1007/11758532\_52},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/iccS/ParasharMKTWKSV06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icpp/WengCKAS06,
author = {Li Weng and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Tahsin M. Kur{\c{c}} and
Gagan Agrawal and
Joel H. Saltz},
title = {Using Space and Attribute Partitioned Partial Replicas for Data Subsetting
and Aggregation Queries},
booktitle = {2006 International Conference on Parallel Processing {(ICPP} 2006),
14-18 August 2006, Columbus, Ohio, {USA}},
pages = {271--280},
publisher = {{IEEE} Computer Society},
year = {2006},
url = {https://doi.org/10.1109/ICPP.2006.73},
doi = {10.1109/ICPP.2006.73},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icpp/WengCKAS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icpp/VydyanathanKSCKSS06,
author = {Nagavijayalakshmi Vydyanathan and
Sriram Krishnamoorthy and
Gerald Sabin and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Tahsin M. Kur{\c{c}} and
P. Sadayappan and
Joel H. Saltz},
title = {An Integrated Approach for Processor Allocation and Scheduling of
Mixed-Parallel Applications},
booktitle = {2006 International Conference on Parallel Processing {(ICPP} 2006),
14-18 August 2006, Columbus, Ohio, {USA}},
pages = {443--450},
publisher = {{IEEE} Computer Society},
year = {2006},
url = {https://doi.org/10.1109/ICPP.2006.22},
doi = {10.1109/ICPP.2006.22},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icpp/VydyanathanKSCKSS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icpp/NarayananKCS06,
author = {Sivaramakrishnan Narayanan and
Tahsin M. Kur{\c{c}} and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Joel H. Saltz},
title = {On Creating Efficient Object-relational Views of Scientific Datasets},
booktitle = {2006 International Conference on Parallel Processing {(ICPP} 2006),
14-18 August 2006, Columbus, Ohio, {USA}},
pages = {551--558},
publisher = {{IEEE} Computer Society},
year = {2006},
url = {https://doi.org/10.1109/ICPP.2006.56},
doi = {10.1109/ICPP.2006.56},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icpp/NarayananKCS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/BuehrerGZSPKS06,
author = {Gregory Buehrer and
Amol Ghoting and
Xi Zhang and
Shirish Tatikonda and
Srinivasan Parthasarathy and
Tahsin M. Kur{\c{c}} and
Joel H. Saltz},
title = {{I/O} conscious algorithm design and systems support for data analysis
on emerging architectures},
booktitle = {20th International Parallel and Distributed Processing Symposium {(IPDPS}
2006), Proceedings, 25-29 April 2006, Rhodes Island, Greece},
publisher = {{IEEE}},
year = {2006},
url = {https://doi.org/10.1109/IPDPS.2006.1639586},
doi = {10.1109/IPDPS.2006.1639586},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ipps/BuehrerGZSPKS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/ZhangKSP06,
author = {Xi Zhang and
Tahsin M. Kur{\c{c}} and
Joel H. Saltz and
Srinivasan Parthasarathy},
title = {Design and analysis of a multi-dimensional data sampling service for
large scale data analysis applications},
booktitle = {20th International Parallel and Distributed Processing Symposium {(IPDPS}
2006), Proceedings, 25-29 April 2006, Rhodes Island, Greece},
publisher = {{IEEE}},
year = {2006},
url = {https://doi.org/10.1109/IPDPS.2006.1639315},
doi = {10.1109/IPDPS.2006.1639315},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ipps/ZhangKSP06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/jsspp/0002CKSS06,
author = {Gaurav Khanna and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Tahsin M. Kur{\c{c}} and
P. Sadayappan and
Joel H. Saltz},
editor = {Eitan Frachtenberg and
Uwe Schwiegelshohn},
title = {A Data Locality Aware Online Scheduling Approach for I/O-Intensive
Jobs with File Sharing},
booktitle = {Job Scheduling Strategies for Parallel Processing, 12th International
Workshop, {JSSPP} 2006, Saint-Malo, France, June 26, 2006, Revised
Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {4376},
pages = {141--160},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/978-3-540-71035-6\_7},
doi = {10.1007/978-3-540-71035-6\_7},
timestamp = {Fri, 27 Mar 2020 08:52:35 +0100},
biburl = {https://dblp.org/rec/conf/jsspp/0002CKSS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sbac-pad/TeodoroTFKMNPS06,
author = {George Teodoro and
Tulio Tavares and
Renato Ferreira and
Tahsin M. Kur{\c{c}} and
Wagner Meira Jr. and
Dorgival Olavo Guedes Neto and
Tony Pan and
Joel H. Saltz},
title = {A Run-time System for Efficient Execution of Scientific Workflows
on Distributed Environments},
booktitle = {18th Symposium on Computer Architecture and High Performance Computing
{(SBAC-PAD} 2006), 17-20 October 2006, Ouro Preto, Minas Gerais, Brazil},
pages = {81--90},
publisher = {{IEEE} Computer Society},
year = {2006},
url = {https://doi.org/10.1109/SBAC-PAD.2006.6},
doi = {10.1109/SBAC-PAD.2006.6},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sbac-pad/TeodoroTFKMNPS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/KumarRKCSCLM06,
author = {Vijay S. Kumar and
Benjamin Rutt and
Tahsin M. Kur{\c{c}} and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Joel H. Saltz and
Sunny K. Chow and
Stephan Lamont and
Maryann E. Martone},
title = {Imaging and visual analysis - Large image correction and warping in
a cluster environment},
booktitle = {Proceedings of the {ACM/IEEE} {SC2006} Conference on High Performance
Networking and Computing, November 11-17, 2006, Tampa, FL, {USA}},
pages = {79},
publisher = {{ACM} Press},
year = {2006},
url = {https://doi.org/10.1145/1188455.1188539},
doi = {10.1145/1188455.1188539},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sc/KumarRKCSCLM06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/concurrency/KurcCZSMWPSHSSSTP05,
author = {Tahsin M. Kur{\c{c}} and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Xi Zhang and
Joel H. Saltz and
Ryan Martino and
Mary F. Wheeler and
Malgorzata Peszynska and
Alan Sussman and
Christian Hansen and
Mrinal K. Sen and
Roustam Seifoullaev and
Paul L. Stoffa and
Carlos Torres{-}Verd{\'{\i}}n and
Manish Parashar},
title = {A simulation and data analysis system for large-scale, data-driven
oil reservoir simulation studies},
journal = {Concurr. Pract. Exp.},
volume = {17},
number = {11},
pages = {1441--1467},
year = {2005},
url = {https://doi.org/10.1002/cpe.898},
doi = {10.1002/CPE.898},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/concurrency/KurcCZSMWPSHSSSTP05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fgcs/ParasharKCKBMSW05,
author = {Manish Parashar and
Hector Klie and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Tahsin M. Kur{\c{c}} and
Wolfgang Bangerth and
Vincent Matossian and
Joel H. Saltz and
Mary F. Wheeler},
title = {Application of Grid-enabled technologies for solving optimization
problems in data-driven reservoir studies},
journal = {Future Gener. Comput. Syst.},
volume = {21},
number = {1},
pages = {19--26},
year = {2005},
url = {https://doi.org/10.1016/j.future.2004.09.028},
doi = {10.1016/J.FUTURE.2004.09.028},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/fgcs/ParasharKCKBMSW05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/HastingsOLKPCS05,
author = {Shannon Hastings and
Scott Oster and
Stephen Langella and
Tahsin M. Kur{\c{c}} and
Tony Pan and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Joel H. Saltz},
title = {Application of Information Technology: {A} Grid-Based Image Archival
and Analysis System},
journal = {J. Am. Medical Informatics Assoc.},
volume = {12},
number = {3},
pages = {286--295},
year = {2005},
url = {https://doi.org/10.1197/jamia.M1698},
doi = {10.1197/JAMIA.M1698},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jamia/HastingsOLKPCS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/sigmod/HastingsRLOCPHFSK05,
author = {Shannon Hastings and
Matheus Ribeiro and
Stephen Langella and
Scott Oster and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Tony Pan and
Kun Huang and
Renato Ferreira and
Joel H. Saltz and
Tahsin M. Kur{\c{c}}},
title = {{XML} database support for distributed execution of data-intensive
scientific workflows},
journal = {{SIGMOD} Rec.},
volume = {34},
number = {3},
pages = {50--55},
year = {2005},
url = {https://doi.org/10.1145/1084805.1084815},
doi = {10.1145/1084805.1084815},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/sigmod/HastingsRLOCPHFSK05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ccgrid/WengCKAS05,
author = {Li Weng and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Tahsin M. Kur{\c{c}} and
Gagan Agrawal and
Joel H. Saltz},
title = {Servicing range queries on multidimensional datasets with partial
replicas},
booktitle = {5th International Symposium on Cluster Computing and the Grid (CCGrid
2005), 9-12 May, 2005, Cardiff, {UK}},
pages = {726--733},
publisher = {{IEEE} Computer Society},
year = {2005},
url = {https://doi.org/10.1109/CCGRID.2005.1558635},
doi = {10.1109/CCGRID.2005.1558635},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ccgrid/WengCKAS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ccgrid/KhannaVKCWSS05,
author = {Gaurav Khanna and
Nagavijayalakshmi Vydyanathan and
Tahsin M. Kur{\c{c}} and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Pete Wyckoff and
Joel H. Saltz and
P. Sadayappan},
title = {A hypergraph partitioning based approach for scheduling of tasks with
batch-shared {I/O}},
booktitle = {5th International Symposium on Cluster Computing and the Grid (CCGrid
2005), 9-12 May, 2005, Cardiff, {UK}},
pages = {792--799},
publisher = {{IEEE} Computer Society},
year = {2005},
url = {https://doi.org/10.1109/CCGRID.2005.1558643},
doi = {10.1109/CCGRID.2005.1558643},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ccgrid/KhannaVKCWSS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cluster/RuttKPKCSW05,
author = {Benjamin Rutt and
Vijay S. Kumar and
Tony Pan and
Tahsin M. Kur{\c{c}} and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Joel H. Saltz and
Yujun Wang},
title = {Distributed Out-of-Core Preprocessing of Very Large Microscopy Images
for Efficient Querying},
booktitle = {2005 {IEEE} International Conference on Cluster Computing {(CLUSTER}
2005), September 26 - 30, 2005, Boston, Massachusetts, {USA}},
pages = {1--10},
publisher = {{IEEE} Computer Society},
year = {2005},
url = {https://doi.org/10.1109/CLUSTR.2005.347054},
doi = {10.1109/CLUSTR.2005.347054},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cluster/RuttKPKCSW05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dmg/NarayananKCS05,
author = {Sivaramakrishnan Narayanan and
Tahsin M. Kur{\c{c}} and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Joel H. Saltz},
editor = {Jean{-}Marc Pierson},
title = {Servicing Seismic and Oil Reservoir Simulation Data Through Grid Data
Services},
booktitle = {Data Management in Grids, First {VLDB} Workshop, {DMG} 2005, Trondheim,
Norway, September 2-3, 2005, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {3836},
pages = {129--142},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11611950\_11},
doi = {10.1007/11611950\_11},
timestamp = {Fri, 09 Apr 2021 18:41:58 +0200},
biburl = {https://dblp.org/rec/conf/dmg/NarayananKCS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccS/ParasharMBKRKCSW05,
author = {Manish Parashar and
Vincent Matossian and
Wolfgang Bangerth and
Hector Klie and
Benjamin Rutt and
Tahsin M. Kur{\c{c}} and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Joel H. Saltz and
Mary F. Wheeler},
editor = {Vaidy S. Sunderam and
G. Dick van Albada and
Peter M. A. Sloot and
Jack J. Dongarra},
title = {Towards Dynamic Data-Driven Optimization of Oil Well Placement},
booktitle = {Computational Science - {ICCS} 2005, 5th International Conference,
Atlanta, GA, USA, May 22-25, 2005, Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {3515},
pages = {656--663},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11428848\_85},
doi = {10.1007/11428848\_85},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/iccS/ParasharMBKRKCSW05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ics/WangPGTBKS05,
author = {Huai Wang and
Srinivasan Parthasarathy and
Amol Ghoting and
Shirish Tatikonda and
Gregory Buehrer and
Tahsin M. Kur{\c{c}} and
Joel H. Saltz},
editor = {Arvind and
Larry Rudolph},
title = {Design of a next generation sampling service for large scale data
analysis applications},
booktitle = {Proceedings of the 19th Annual International Conference on Supercomputing,
{ICS} 2005, Cambridge, Massachusetts, USA, June 20-22, 2005},
pages = {91--100},
publisher = {{ACM}},
year = {2005},
url = {https://doi.org/10.1145/1088149.1088162},
doi = {10.1145/1088149.1088162},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ics/WangPGTBKS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/WangGBTPKS05,
author = {Huai Wang and
Amol Ghoting and
Gregory Buehrer and
Shirish Tatikonda and
Srinivasan Parthasarathy and
Tahsin M. Kur{\c{c}} and
Joel H. Saltz},
title = {A Services Oriented Framework for Next Generation Data Analysis Centers},
booktitle = {19th International Parallel and Distributed Processing Symposium {(IPDPS}
2005), {CD-ROM} / Abstracts Proceedings, 4-8 April 2005, Denver, CO,
{USA}},
publisher = {{IEEE} Computer Society},
year = {2005},
url = {https://doi.org/10.1109/IPDPS.2005.66},
doi = {10.1109/IPDPS.2005.66},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ipps/WangGBTPKS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/parco/CatalyurekHHKKLNOPRZS05,
author = {{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Shannon Hastings and
Kun Huang and
Vijay S. Kumar and
Tahsin M. Kur{\c{c}} and
Stephen Langella and
Sivaramakrishnan Narayanan and
Scott Oster and
Tony Pan and
Benjamin Rutt and
Xi Zhang and
Joel H. Saltz},
editor = {Gerhard R. Joubert and
Wolfgang E. Nagel and
Frans J. Peters and
Oscar G. Plata and
P. Tirado and
Emilio L. Zapata},
title = {Supporting Large Scale Medical and Scientific Datasets},
booktitle = {Parallel Computing: Current {\&} Future Issues of High-End Computing,
Proceedings of the International Conference ParCo 2005, 13-16 September
2005, Department of Computer Architecture, University of Malaga, Spain},
series = {John von Neumann Institute for Computing Series},
volume = {33},
pages = {3--14},
publisher = {Central Institute for Applied Mathematics, J{\"{u}}lich, Germany},
year = {2005},
timestamp = {Fri, 02 Mar 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/parco/CatalyurekHHKKLNOPRZS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sac/HastingsLOKPCJS05,
author = {Shannon Hastings and
Stephen Langella and
Scott Oster and
Tahsin M. Kur{\c{c}} and
Tony Pan and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Daniel Janies and
Joel H. Saltz},
editor = {Hisham Haddad and
Lorie M. Liebrock and
Andrea Omicini and
Roger L. Wainwright},
title = {Grid-based management of biomedical data using an XML-based distributed
data management system},
booktitle = {Proceedings of the 2005 {ACM} Symposium on Applied Computing (SAC),
Santa Fe, New Mexico, USA, March 13-17, 2005},
pages = {105--109},
publisher = {{ACM}},
year = {2005},
url = {https://doi.org/10.1145/1066677.1066707},
doi = {10.1145/1066677.1066707},
timestamp = {Tue, 06 Nov 2018 11:06:45 +0100},
biburl = {https://dblp.org/rec/conf/sac/HastingsLOKPCJS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tpds/AndradeKSS04,
author = {Henrique Andrade and
Tahsin M. Kur{\c{c}} and
Alan Sussman and
Joel H. Saltz},
title = {Optimizing the Execution of Multiple Data Analysis Queries on Parallel
and Distributed Environments},
journal = {{IEEE} Trans. Parallel Distributed Syst.},
volume = {15},
number = {6},
pages = {520--532},
year = {2004},
url = {https://doi.org/10.1109/TPDS.2004.11},
doi = {10.1109/TPDS.2004.11},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tpds/AndradeKSS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ccgrid/ZhangPCKS04,
author = {Xi Zhang and
Tony Pan and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Tahsin M. Kur{\c{c}} and
Joel H. Saltz},
title = {Serving queries to multi-resolution datasets on disk-based storage
clusters},
booktitle = {4th {IEEE/ACM} International Symposium on Cluster Computing and the
Grid (CCGrid 2004), April 19-22, 2004, Chicago, Illinois, {USA}},
pages = {490--498},
publisher = {{IEEE} Computer Society},
year = {2004},
url = {https://doi.org/10.1109/CCGrid.2004.1336605},
doi = {10.1109/CCGRID.2004.1336605},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ccgrid/ZhangPCKS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cluster/LangellaHOKCS04,
author = {Stephen Langella and
Shannon Hastings and
Scott Oster and
Tahsin M. Kur{\c{c}} and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Joel H. Saltz},
title = {A distributed data management middleware for data-driven application
systems},
booktitle = {2004 {IEEE} International Conference on Cluster Computing {(CLUSTER}
2004), September 20-23 2004, San Diego, California, {USA}},
pages = {267--276},
publisher = {{IEEE} Computer Society},
year = {2004},
url = {https://doi.org/10.1109/CLUSTR.2004.1392624},
doi = {10.1109/CLUSTR.2004.1392624},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cluster/LangellaHOKCS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/grid/VydyanathanKKCWSS04,
author = {Nagavijayalakshmi Vydyanathan and
Gaurav Khanna and
Tahsin M. Kur{\c{c}} and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Pete Wyckoff and
Joel H. Saltz and
P. Sadayappan},
editor = {Rajkumar Buyya},
title = {Use of {PVFS} for Efficient Execution of Jobs with Pipeline-Shared
{I/O}},
booktitle = {5th International Workshop on Grid Computing {(GRID} 2004), 8 November
2004, Pittsburgh, PA, USA, Proceedings},
pages = {235--242},
publisher = {{IEEE} Computer Society},
year = {2004},
url = {https://doi.org/10.1109/GRID.2004.63},
doi = {10.1109/GRID.2004.63},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/grid/VydyanathanKKCWSS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hpc/RibeiroKPHCZLHOFS04,
author = {Matheus Ribeiro and
Tahsin M. Kur{\c{c}} and
Tony Pan and
Kun Huang and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Xi Zhang and
Stephen Langella and
Shannon Hastings and
Scott Oster and
Renato Ferreira and
Joel H. Saltz},
editor = {Lucio Grandinetti},
title = {Tools for efficient subsetting and pipelined processing of large scale,
distributed biomedical image data},
booktitle = {Grid Computing: The New Frontier of High Performance Computing [post-proceedings
of the High Performance Computing Workshop, {HPC} 2004, Cetraro, Italy,
2004]},
series = {Advances in Parallel Computing},
volume = {14},
pages = {403--422},
publisher = {Elsevier},
year = {2004},
url = {https://doi.org/10.1016/S0927-5452(05)80020-6},
doi = {10.1016/S0927-5452(05)80020-6},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/hpc/RibeiroKPHCZLHOFS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hpdc/ZhangKPCNWS04,
author = {Xi Zhang and
Tahsin M. Kur{\c{c}} and
Tony Pan and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Sivaramakrishnan Narayanan and
Pete Wyckoff and
Joel H. Saltz},
title = {Strategies for Using Additional Resources in Parallel Hash-Based Join
Algorithms},
booktitle = {13th International Symposium on High-Performance Distributed Computing
{(HPDC-13} 2004), 4-6 June 2004, Honolulu, Hawaii, {USA}},
pages = {4--13},
publisher = {{IEEE} Computer Society},
year = {2004},
url = {https://doi.ieeecomputersociety.org/10.1109/HPDC.2004.34},
doi = {10.1109/HPDC.2004.34},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/hpdc/ZhangKPCNWS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hpdc/WengACKNS04,
author = {Li Weng and
Gagan Agrawal and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Tahsin M. Kur{\c{c}} and
Sivaramakrishnan Narayanan and
Joel H. Saltz},
title = {An Approach for Automatic Data Virtualization},
booktitle = {13th International Symposium on High-Performance Distributed Computing
{(HPDC-13} 2004), 4-6 June 2004, Honolulu, Hawaii, {USA}},
pages = {24--33},
publisher = {{IEEE} Computer Society},
year = {2004},
url = {https://doi.ieeecomputersociety.org/10.1109/HPDC.2004.2},
doi = {10.1109/HPDC.2004.2},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/hpdc/WengACKNS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccS/ParasharKKMSW04,
author = {Manish Parashar and
Hector Klie and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Tahsin M. Kur{\c{c}} and
Vincent Matossian and
Joel H. Saltz and
Mary F. Wheeler},
editor = {Marian Bubak and
G. Dick van Albada and
Peter M. A. Sloot and
Jack J. Dongarra},
title = {Application of Grid-Enabled Technologies for Solving Optimization
Problems in Data-Driven Reservoir Studies},
booktitle = {Computational Science - {ICCS} 2004, 4th International Conference,
Krak{\'{o}}w, Poland, June 6-9, 2004, Proceedings, Part {III}},
series = {Lecture Notes in Computer Science},
volume = {3038},
pages = {805--812},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-24688-6\_104},
doi = {10.1007/978-3-540-24688-6\_104},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/iccS/ParasharKKMSW04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/WoodsCSK04,
author = {Brent Woods and
Bradley D. Clymer and
Joel H. Saltz and
Tahsin M. Kur{\c{c}}},
title = {A Parallel Implementation of 4-Dimensional Haralick Texture Analysis
for Disk-Resident Image Datasets},
booktitle = {Proceedings of the {ACM/IEEE} {SC2004} Conference on High Performance
Networking and Computing, 6-12 November 2004, Pittsburgh, PA, USA,
CD-Rom},
pages = {48},
publisher = {{IEEE} Computer Society},
year = {2004},
url = {https://doi.org/10.1109/SC.2004.5},
doi = {10.1109/SC.2004.5},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sc/WoodsCSK04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ppl/NarayananKCS03,
author = {Sivaramakrishnan Narayanan and
Tahsin M. Kur{\c{c}} and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Joel H. Saltz},
title = {Database Support for Data-Driven Scientific Applications in the Grid},
journal = {Parallel Process. Lett.},
volume = {13},
number = {2},
pages = {245--271},
year = {2003},
url = {https://doi.org/10.1142/S0129626403001264},
doi = {10.1142/S0129626403001264},
timestamp = {Tue, 24 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ppl/NarayananKCS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/titb/CatalyurekBCKSS03,
author = {{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Michael D. Beynon and
Chialin Chang and
Tahsin M. Kur{\c{c}} and
Alan Sussman and
Joel H. Saltz},
title = {The virtual microscope},
journal = {{IEEE} Trans. Inf. Technol. Biomed.},
volume = {7},
number = {4},
pages = {230--248},
year = {2003},
url = {https://doi.org/10.1109/TITB.2004.823952},
doi = {10.1109/TITB.2004.823952},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/titb/CatalyurekBCKSS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ccgrid/HastingsKLCPS03,
author = {Shannon Hastings and
Tahsin M. Kur{\c{c}} and
Stephen Langella and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Tony Pan and
Joel H. Saltz},
title = {Image Processing or the Grid: {A} Toolkit or Building Grid-enabled
Image Processing Applications},
booktitle = {3rd {IEEE} International Symposium on Cluster Computing and the Grid
(CCGrid 2003), 12-15 May 2003, Tokyo, Japan},
pages = {36--43},
publisher = {{IEEE} Computer Society},
year = {2003},
url = {https://doi.org/10.1109/CCGRID.2003.1199350},
doi = {10.1109/CCGRID.2003.1199350},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ccgrid/HastingsKLCPS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ccgrid/SundaresanKLPS03,
author = {Radhakrishnan Sundaresan and
Tahsin M. Kur{\c{c}} and
Mario Lauria and
Srinivasan Parthasarathy and
Joel H. Saltz},
title = {A Slacker Coherence rotocol for Pull-based Monitoring of On-line Data
Source},
booktitle = {3rd {IEEE} International Symposium on Cluster Computing and the Grid
(CCGrid 2003), 12-15 May 2003, Tokyo, Japan},
pages = {250--257},
publisher = {{IEEE} Computer Society},
year = {2003},
url = {https://doi.org/10.1109/CCGRID.2003.1199375},
doi = {10.1109/CCGRID.2003.1199375},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ccgrid/SundaresanKLPS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/grid/NarayananCKZS03,
author = {Sivaramakrishnan Narayanan and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Tahsin M. Kur{\c{c}} and
Xi Zhang and
Joel H. Saltz},
editor = {Heinz Stockinger},
title = {Applying Database Support for Large Scale Data Driven Science in Distributed
Environments},
booktitle = {4th International Workshop on Grid Computing {(GRID} 2003), 17 November
2003, Phoenix, AZ, USA, Proceedings},
pages = {141--148},
publisher = {{IEEE} Computer Society},
year = {2003},
url = {https://doi.org/10.1109/GRID.2003.1261709},
doi = {10.1109/GRID.2003.1261709},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/grid/NarayananCKZS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hpdc/BalajiWKCPS03,
author = {Pavan Balaji and
Jiesheng Wu and
Tahsin M. Kur{\c{c}} and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Dhabaleswar K. Panda and
Joel H. Saltz},
title = {Impact of High Performance Sockets on Data Intensive Applications},
booktitle = {12th International Symposium on High-Performance Distributed Computing
{(HPDC-12} 2003), 22-24 June 2003, Seattle, WA, {USA}},
pages = {24--33},
publisher = {{IEEE} Computer Society},
year = {2003},
url = {https://doi.org/10.1109/HPDC.2003.1210013},
doi = {10.1109/HPDC.2003.1210013},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/hpdc/BalajiWKCPS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hpdc/SundaresanLKPS03,
author = {Radhakrishnan Sundaresan and
Mario Lauria and
Tahsin M. Kur{\c{c}} and
Srinivasan Parthasarathy and
Joel H. Saltz},
title = {Adaptive Polling of Grid Resource Monitors Using a Slacker Coherence
Model},
booktitle = {12th International Symposium on High-Performance Distributed Computing
{(HPDC-12} 2003), 22-24 June 2003, Seattle, WA, {USA}},
pages = {260--269},
publisher = {{IEEE} Computer Society},
year = {2003},
url = {https://doi.org/10.1109/HPDC.2003.1210035},
doi = {10.1109/HPDC.2003.1210035},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/hpdc/SundaresanLKPS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccS/SaltzCKGHLNMBPWSBHSS03,
author = {Joel H. Saltz and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Tahsin M. Kur{\c{c}} and
Mike Gray and
Shannon Hastings and
Stephen Langella and
Sivaramakrishnan Narayanan and
Ryan Martino and
Steven Bryant and
Malgorzata Peszynska and
Mary F. Wheeler and
Alan Sussman and
Michael D. Beynon and
Christian Hansen and
Don Stredney and
Dennis Sessanna},
editor = {Peter M. A. Sloot and
David Abramson and
Alexander V. Bogdanov and
Jack J. Dongarra and
Albert Y. Zomaya and
Yuri E. Gorbachev},
title = {Driving Scientific Applications by Data in Distributed Environments},
booktitle = {Computational Science - {ICCS} 2003, International Conference, Melbourne,
Australia and St. Petersburg, Russia, June 2-4, 2003. Proceedings,
Part {IV}},
series = {Lecture Notes in Computer Science},
volume = {2660},
pages = {355--364},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/3-540-44864-0\_37},
doi = {10.1007/3-540-44864-0\_37},
timestamp = {Tue, 20 Jun 2023 16:27:45 +0200},
biburl = {https://dblp.org/rec/conf/iccS/SaltzCKGHLNMBPWSBHSS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/AndradeKSS03,
author = {Henrique Andrade and
Tahsin M. Kur{\c{c}} and
Alan Sussman and
Joel H. Saltz},
title = {Exploiting Functional Decomposition for Efficient Parallel Processing
of Multiple Data Analysis Queries},
booktitle = {17th International Parallel and Distributed Processing Symposium {(IPDPS}
2003), 22-26 April 2003, Nice, France, CD-ROM/Abstracts Proceedings},
pages = {81},
publisher = {{IEEE} Computer Society},
year = {2003},
url = {https://doi.org/10.1109/IPDPS.2003.1213184},
doi = {10.1109/IPDPS.2003.1213184},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ipps/AndradeKSS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/lcpc/AndradeAKSS03,
author = {Henrique Andrade and
Suresh Aryangat and
Tahsin M. Kur{\c{c}} and
Joel H. Saltz and
Alan Sussman},
editor = {Lawrence Rauchwerger},
title = {Efficient Execution of Multi-query Data Analysis Batches Using Compiler
Optimization Strategies},
booktitle = {Languages and Compilers for Parallel Computing, 16th International
Workshop, {LCPC} 2003, College Station, TX, USA, October 2-4, 2003,
Revised Papers},
series = {Lecture Notes in Computer Science},
volume = {2958},
pages = {509--524},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/978-3-540-24644-2\_33},
doi = {10.1007/978-3-540-24644-2\_33},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/lcpc/AndradeAKSS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sac/CatalyurekGKSSF03,
author = {{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Mike Gray and
Tahsin M. Kur{\c{c}} and
Joel H. Saltz and
Eric Stahlberg and
Renato Ferreira},
editor = {Gary B. Lamont and
Hisham Haddad and
George A. Papadopoulos and
Brajendra Panda},
title = {A Component-based Implementation of Multiple Sequence Alignment},
booktitle = {Proceedings of the 2003 {ACM} Symposium on Applied Computing (SAC),
March 9-12, 2003, Melbourne, FL, {USA}},
pages = {122--126},
publisher = {{ACM}},
year = {2003},
url = {https://doi.org/10.1145/952532.952559},
doi = {10.1145/952532.952559},
timestamp = {Thu, 31 Jan 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sac/CatalyurekGKSSF03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/KurcLACFS03,
author = {Tahsin M. Kur{\c{c}} and
Feng Lee and
Gagan Agrawal and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Renato Ferreira and
Joel H. Saltz},
title = {Optimizing Reduction Computations In a Distributed Environment},
booktitle = {Proceedings of the {ACM/IEEE} {SC2003} Conference on High Performance
Networking and Computing, 15-21 November 2003, Phoenix, AZ, USA, CD-Rom},
pages = {9},
publisher = {{ACM}},
year = {2003},
url = {https://doi.org/10.1145/1048935.1050160},
doi = {10.1145/1048935.1050160},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sc/KurcLACFS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fgcs/BeynonKSS02,
author = {Michael D. Beynon and
Tahsin M. Kur{\c{c}} and
Alan Sussman and
Joel H. Saltz},
title = {Optimizing execution of component-based applications using group instances},
journal = {Future Gener. Comput. Syst.},
volume = {18},
number = {4},
pages = {435--448},
year = {2002},
url = {https://doi.org/10.1016/S0167-739X(01)00070-X},
doi = {10.1016/S0167-739X(01)00070-X},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/fgcs/BeynonKSS02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/pc/BeynonCCKSAFS02,
author = {Michael D. Beynon and
Chialin Chang and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Tahsin M. Kur{\c{c}} and
Alan Sussman and
Henrique Andrade and
Renato Ferreira and
Joel H. Saltz},
title = {Processing large-scale multi-dimensional data in parallel and distributed
environments},
journal = {Parallel Comput.},
volume = {28},
number = {5},
pages = {827--859},
year = {2002},
url = {https://doi.org/10.1016/S0167-8191(02)00097-2},
doi = {10.1016/S0167-8191(02)00097-2},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/pc/BeynonCCKSAFS02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ccgrid/AndradeKSS02,
author = {Henrique Andrade and
Tahsin M. Kur{\c{c}} and
Alan Sussman and
Joel H. Saltz},
title = {Multiple Query Optimization for Data Analysis Applications on Clusters
of SMPs},
booktitle = {2nd {IEEE} International Symposium on Cluster Computing and the Grid
(CCGrid 2002), 22-24 May 2002, Berlin, Germany},
pages = {154--162},
publisher = {{IEEE} Computer Society},
year = {2002},
url = {https://doi.org/10.1109/CCGRID.2002.1017123},
doi = {10.1109/CCGRID.2002.1017123},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ccgrid/AndradeKSS02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/AndradeKSS02,
author = {Henrique Andrade and
Tahsin M. Kur{\c{c}} and
Alan Sussman and
Joel H. Saltz},
title = {Scheduling Multiple Data Visualization Query Workloads on a Shared
Memory Machine},
booktitle = {16th International Parallel and Distributed Processing Symposium {(IPDPS}
2002), 15-19 April 2002, Fort Lauderdale, FL, USA, CD-ROM/Abstracts
Proceedings},
publisher = {{IEEE} Computer Society},
year = {2002},
url = {https://doi.org/10.1109/IPDPS.2002.1015482},
doi = {10.1109/IPDPS.2002.1015482},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ipps/AndradeKSS02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/BeynonKCSS02,
author = {Michael D. Beynon and
Tahsin M. Kur{\c{c}} and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Alan Sussman and
Joel H. Saltz},
title = {Efficient Manipulation of Large Datasets on Heterogeneous Storage
Systems},
booktitle = {16th International Parallel and Distributed Processing Symposium {(IPDPS}
2002), 15-19 April 2002, Fort Lauderdale, FL, USA, CD-ROM/Abstracts
Proceedings},
publisher = {{IEEE} Computer Society},
year = {2002},
url = {https://doi.org/10.1109/IPDPS.2002.1015655},
doi = {10.1109/IPDPS.2002.1015655},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ipps/BeynonKCSS02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/CatalyurekSFKS02,
author = {{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Eric Stahlberg and
Renato Ferreira and
Tahsin M. Kur{\c{c}} and
Joel H. Saltz},
title = {Improving Performance of Multiple Sequence Alignment Analysis in Multi-Client
Environments},
booktitle = {16th International Parallel and Distributed Processing Symposium {(IPDPS}
2002), 15-19 April 2002, Fort Lauderdale, FL, USA, CD-ROM/Abstracts
Proceedings},
publisher = {{IEEE} Computer Society},
year = {2002},
url = {https://doi.org/10.1109/IPDPS.2002.1016584},
doi = {10.1109/IPDPS.2002.1016584},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ipps/CatalyurekSFKS02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/AndradeKSS02,
author = {Henrique Andrade and
Tahsin M. Kur{\c{c}} and
Alan Sussman and
Joel H. Saltz},
editor = {Roscoe C. Giles and
Daniel A. Reed and
Kathryn Kelley},
title = {Active Proxy-G: optimizing the query execution process in the grid},
booktitle = {Proceedings of the 2002 {ACM/IEEE} conference on Supercomputing, Baltimore,
Maryland, USA, November 16-22, 2002, {CD-ROM}},
pages = {46:1--46:15},
publisher = {{IEEE} Computer Society},
year = {2002},
url = {https://doi.org/10.1109/SC.2002.10031},
doi = {10.1109/SC.2002.10031},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sc/AndradeKSS02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/SpencerFBKCSS02,
author = {Matthew Spencer and
Renato Ferreira and
Michael D. Beynon and
Tahsin M. Kur{\c{c}} and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Alan Sussman and
Joel H. Saltz},
editor = {Roscoe C. Giles and
Daniel A. Reed and
Kathryn Kelley},
title = {Executing multiple pipelined data analysis operations in the grid},
booktitle = {Proceedings of the 2002 {ACM/IEEE} conference on Supercomputing, Baltimore,
Maryland, USA, November 16-22, 2002, {CD-ROM}},
pages = {66:1--66:18},
publisher = {{IEEE} Computer Society},
year = {2002},
url = {https://doi.org/10.1109/SC.2002.10015},
doi = {10.1109/SC.2002.10015},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sc/SpencerFBKCSS02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cga/KurcCCSS01,
author = {Tahsin M. Kur{\c{c}} and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Chialin Chang and
Alan Sussman and
Joel H. Saltz},
title = {Visualization of Large Data Sets with the Active Data Repository},
journal = {{IEEE} Computer Graphics and Applications},
volume = {21},
number = {4},
pages = {24--33},
year = {2001},
url = {https://doi.org/10.1109/38.933521},
doi = {10.1109/38.933521},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/cga/KurcCCSS01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/pc/BeynonKCCSS01,
author = {Michael D. Beynon and
Tahsin M. Kur{\c{c}} and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Chialin Chang and
Alan Sussman and
Joel H. Saltz},
title = {Distributed processing of very large datasets with DataCutter},
journal = {Parallel Comput.},
volume = {27},
number = {11},
pages = {1457--1478},
year = {2001},
url = {https://doi.org/10.1016/S0167-8191(01)00099-0},
doi = {10.1016/S0167-8191(01)00099-0},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/pc/BeynonKCCSS01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ccgrid/BeynonSKS01,
author = {Michael D. Beynon and
Alan Sussman and
Tahsin M. Kur{\c{c}} and
Joel H. Saltz},
title = {Optimizing Execution of Component-based Applications using Group Instances},
booktitle = {First {IEEE} International Symposium on Cluster Computing and the
Grid (CCGrid 2001), May 15-18, 2001, Brisbane, Australia},
pages = {56--65},
publisher = {{IEEE} Computer Society},
year = {2001},
url = {https://doi.org/10.1109/CCGRID.2001.923176},
doi = {10.1109/CCGRID.2001.923176},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ccgrid/BeynonSKS01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ieeeams/BeynonSCKS01,
author = {Michael D. Beynon and
Alan Sussman and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Tahsin M. Kur{\c{c}} and
Joel H. Saltz},
title = {Performance Optimization for Data Intensive Grid Applications},
booktitle = {3rd Annual International Workshop on Active Middleware Services {(AMS}
2001), 6 August 2001, San Francisco, CA, {USA}},
pages = {97--105},
publisher = {{IEEE} Computer Society},
year = {2001},
url = {https://doi.org/10.1109/AMS.2001.993725},
doi = {10.1109/AMS.2001.993725},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ieeeams/BeynonSCKS01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ppsc/ChangKSCS01,
author = {Chialin Chang and
Tahsin M. Kur{\c{c}} and
Alan Sussman and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Joel H. Saltz},
title = {A Hypergraph-Based Workload Partitioning Strategy for Parallel Data
Aggregation},
booktitle = {Proceedings of the Tenth {SIAM} Conference on Parallel Processing
for Scientific Computing, {PPSC} 2001, Portsmouth, Virginia, USA,
March 12-14, 2001},
publisher = {{SIAM}},
year = {2001},
timestamp = {Mon, 20 Mar 2017 14:21:45 +0100},
biburl = {https://dblp.org/rec/conf/ppsc/ChangKSCS01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/AndradeKSS01,
author = {Henrique Andrade and
Tahsin M. Kur{\c{c}} and
Alan Sussman and
Joel H. Saltz},
editor = {Greg Johnson},
title = {Efficient execution of multiple query workloads in data analysis applications},
booktitle = {Proceedings of the 2001 {ACM/IEEE} conference on Supercomputing, Denver,
CO, USA, November 10-16, 2001, {CD-ROM}},
pages = {53},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/582034.582087},
doi = {10.1145/582034.582087},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sc/AndradeKSS01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijhpca/KurcUEHSS00,
author = {Tahsin M. Kur{\c{c}} and
Mustafa Uysal and
Hyeonsang Eom and
Jeffrey K. Hollingsworth and
Joel H. Saltz and
Alan Sussman},
title = {Efficient Performance Prediction for Large-Scale, Data-Intensive Applications},
journal = {Int. J. High Perform. Comput. Appl.},
volume = {14},
number = {3},
pages = {216--227},
year = {2000},
url = {https://doi.org/10.1177/109434200001400305},
doi = {10.1177/109434200001400305},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ijhpca/KurcUEHSS00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tjs/KutlucaKA00,
author = {H{\"{u}}useyin Kutluca and
Tahsin M. Kur{\c{c}} and
Cevdet Aykanat},
title = {Image-Space Decomposition Algorithms for Sort-First Parallel Volume
Rendering of Unstructured Grids},
journal = {J. Supercomput.},
volume = {15},
number = {1},
pages = {51--93},
year = {2000},
url = {https://doi.org/10.1023/A:1008169609963},
doi = {10.1023/A:1008169609963},
timestamp = {Fri, 22 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tjs/KutlucaKA00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hcw/BeynonKSS00,
author = {Michael D. Beynon and
Tahsin M. Kur{\c{c}} and
Alan Sussman and
Joel H. Saltz},
title = {Design of a Framework for Data-Intensive Wide-Area Applications},
booktitle = {9th Heterogeneous Computing Workshop, {HCW} 2000, Cancun, Mexico,
May 1, 2000},
pages = {116--130},
publisher = {{IEEE} Computer Society},
year = {2000},
url = {https://doi.org/10.1109/HCW.2000.843737},
doi = {10.1109/HCW.2000.843737},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/hcw/BeynonKSS00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/ChangKSS00,
author = {Chialin Chang and
Tahsin M. Kur{\c{c}} and
Alan Sussman and
Joel H. Saltz},
title = {Optimizing Retrieval and Processing of Multi-Dimensional Scientific
Datasets},
booktitle = {Proceedings of the 14th International Parallel {\&} Distributed
Processing Symposium (IPDPS'00), Cancun, Mexico, May 1-5, 2000},
pages = {405--410},
publisher = {{IEEE} Computer Society},
year = {2000},
url = {https://doi.org/10.1109/IPDPS.2000.846013},
doi = {10.1109/IPDPS.2000.846013},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ipps/ChangKSS00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mss/BeynonFKSS00,
author = {Michael D. Beynon and
Renato Ferreira and
Tahsin M. Kur{\c{c}} and
Alan Sussman and
Joel H. Saltz},
title = {DataCutter: Middleware for Filtering Very Large Scientific Datasets
on Archival Storage Systems},
booktitle = {Eighth {NASA} Goddard Space Flight Center Conference on Mass Storage
Systems and Technologies in cooperation with Seventeenth {IEEE} Symposium
on Mass Storage Systems, {MSS} 2000, College Park, MD, USA, March
27-30, 2000},
pages = {119--134},
year = {2000},
timestamp = {Thu, 31 Jan 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/mss/BeynonFKSS00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ppl/FerreiraKBCSS99,
author = {Renato Ferreira and
Tahsin M. Kur{\c{c}} and
Michael D. Beynon and
Chialin Chang and
Alan Sussman and
Joel H. Saltz},
title = {Object-Relational Queries into Multidimensional Databases with the
Active Data Repository},
journal = {Parallel Process. Lett.},
volume = {9},
number = {2},
pages = {173--195},
year = {1999},
url = {https://doi.org/10.1142/S0129626499000190},
doi = {10.1142/S0129626499000190},
timestamp = {Tue, 24 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ppl/FerreiraKBCSS99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/KurcBCFBSS99,
author = {Tahsin M. Kur{\c{c}} and
Michael D. Beynon and
Chialin Chang and
Renato Ferreira and
Ben Bederson and
Joel H. Saltz and
Alan Sussman},
title = {A High-Performance Database System for Managing Large Multi-resolution
Medical Images},
booktitle = {{AMIA} 1999, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 6-10, 1999},
publisher = {{AMIA}},
year = {1999},
url = {https://knowledge.amia.org/amia-55142-a1999a-1.591078/t-002-1.592771/f-001-1.592772/a-298-1.593069/a-299-1.593066},
timestamp = {Wed, 17 Apr 2024 11:48:49 +0200},
biburl = {https://dblp.org/rec/conf/amia/KurcBCFBSS99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ppsc/KurcSS99,
author = {Tahsin M. Kur{\c{c}} and
Alan Sussman and
Joel H. Saltz},
title = {Coupling Multiple Simulations via a High Performance Customizable
Database System},
booktitle = {Proceedings of the Ninth {SIAM} Conference on Parallel Processing
for Scientific Computing, {PPSC} 1999, San Antonio, Texas, USA, March
22-24, 1999},
publisher = {{SIAM}},
year = {1999},
timestamp = {Mon, 20 Mar 2017 14:21:45 +0100},
biburl = {https://dblp.org/rec/conf/ppsc/KurcSS99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/KurcCFSS99,
author = {Tahsin M. Kur{\c{c}} and
Chialin Chang and
Renato Ferreira and
Alan Sussman and
Joel H. Saltz},
title = {Querying Very Large Multi-dimensional Datasets in {ADR}},
booktitle = {Proceedings of the {ACM/IEEE} Conference on Supercomputing, {SC} 1999,
November 13-19, 1999, Portland, Oregon, {USA}},
pages = {12},
publisher = {{ACM}},
year = {1999},
url = {https://doi.org/10.1145/331532.331544},
doi = {10.1145/331532.331544},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sc/KurcCFSS99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cg/KurcAO98,
author = {Tahsin M. Kur{\c{c}} and
Cevdet Aykanat and
B{\"{u}}lent {\"{O}}zg{\"{u}}{\c{c}}},
title = {Object-space parallel polygon rendering on hypercubes},
journal = {Comput. Graph.},
volume = {22},
number = {4},
pages = {487--503},
year = {1998},
url = {https://doi.org/10.1016/S0097-8493(98)00047-8},
doi = {10.1016/S0097-8493(98)00047-8},
timestamp = {Wed, 19 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/cg/KurcAO98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/lcr/UysalKSS98,
author = {Mustafa Uysal and
Tahsin M. Kur{\c{c}} and
Alan Sussman and
Joel H. Saltz},
editor = {David R. O'Hallaron},
title = {A Performance Prediction Framework for Data Intensive Applications
on Large Scale Parallel Machines},
booktitle = {Languages, Compilers, and Run-Time Systems for Scalable Computers,
4th International Workshop, {LCR} '98, Pittsburgh, PA, USA, May 28-30,
1998, Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {1511},
pages = {243--258},
publisher = {Springer},
year = {1998},
url = {https://doi.org/10.1007/3-540-49530-4\_18},
doi = {10.1007/3-540-49530-4\_18},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/lcr/UysalKSS98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@phdthesis{DBLP:phd/tr/Kurc97,
author = {Tahsin M. Kur{\c{c}}},
title = {Pararllel rendering algorithms for distributed-memory multicomputers
({\c{C}}ok i{\c{s}}lemcili da{\u{g}}{\i}t{\i}k haf{\i}zal{\i} bilgisayarlarda
paralel g{\"{o}}r{\"{u}}nt{\"{u}}leme algoritmalar{\i})},
school = {{\.{I}}hsan Do{\u{g}}ramac{\i} Bilkent University, Turkey},
year = {1997},
url = {https://tez.yok.gov.tr/UlusalTezMerkezi/tezDetay.jsp?id=8O\_11U9-2wWKHUW3CpSt0g\&\#38;no=8O\_11U9-2wWKHUW3CpSt0g},
timestamp = {Sun, 19 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/phd/tr/Kurc97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/vc/KurcAO97,
author = {Tahsin M. Kur{\c{c}} and
Cevdet Aykanat and
B{\"{u}}lent {\"{O}}zg{\"{u}}{\c{c}}},
title = {A parallel scaled conjugate-gradient algorithm for the solution phase
of gathering radiosity on hypercubes},
journal = {Vis. Comput.},
volume = {13},
number = {1},
pages = {1--19},
year = {1997},
url = {https://doi.org/10.1007/s003710050085},
doi = {10.1007/S003710050085},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/vc/KurcAO97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hpcn/KurcKAO97,
author = {Tahsin M. Kur{\c{c}} and
H{\"{u}}useyin Kutluca and
Cevdet Aykanat and
B{\"{u}}lent {\"{O}}zg{\"{u}}{\c{c}}},
editor = {Louis O. Hertzberger and
Peter M. A. Sloot},
title = {A Comparison of Spatial Subdivision Algorithms for Sort-First Rendering},
booktitle = {High-Performance Computing and Networking, International Conference
and Exhibition, {HPCN} Europe 1997, Vienna, Austria, April 28-30,
1997, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {1225},
pages = {137--146},
publisher = {Springer},
year = {1997},
url = {https://doi.org/10.1007/BFb0031587},
doi = {10.1007/BFB0031587},
timestamp = {Tue, 14 May 2019 10:00:47 +0200},
biburl = {https://dblp.org/rec/conf/hpcn/KurcKAO97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hpcn/KurcAO96,
author = {Tahsin M. Kur{\c{c}} and
Cevdet Aykanat and
B{\"{u}}lent {\"{O}}zg{\"{u}}{\c{c}}},
editor = {Heather M. Liddell and
Adrian Colbrook and
Louis O. Hertzberger and
Peter M. A. Sloot},
title = {Active Pixel Merging on Hypercube Multicomputers},
booktitle = {High-Performance Computing and Networking, International Conference
and Exhibition, {HPCN} Europe 1996, Brussels, Belgium, April 15-19,
1996, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {1067},
pages = {319--326},
publisher = {Springer},
year = {1996},
url = {https://doi.org/10.1007/3-540-61142-8\_565},
doi = {10.1007/3-540-61142-8\_565},
timestamp = {Tue, 14 May 2019 10:00:47 +0200},
biburl = {https://dblp.org/rec/conf/hpcn/KurcAO96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/para/TaninKAO95,
author = {Egemen Tanin and
Tahsin M. Kur{\c{c}} and
Cevdet Aykanat and
B{\"{u}}lent {\"{O}}zg{\"{u}}{\c{c}}},
editor = {Jack J. Dongarra and
Kaj Madsen and
Jerzy Wasniewski},
title = {Comparison of Two Image-Space Subdivision Algorithms for Direct Volume
Rendering on Distributed-Memory Multicomputers},
booktitle = {Applied Parallel Computing, Computations in Physics, Chemistry and
Engineering Science, Second International Workshop, {PARA} '95, Lyngby,
Denmark, August 21-24, 1995, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {1041},
pages = {503--512},
publisher = {Springer},
year = {1995},
url = {https://doi.org/10.1007/3-540-60902-4\_53},
doi = {10.1007/3-540-60902-4\_53},
timestamp = {Tue, 14 May 2019 10:00:40 +0200},
biburl = {https://dblp.org/rec/conf/para/TaninKAO95.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/edmcc/KurcAE91,
author = {Tahsin M. Kur{\c{c}} and
Cevdet Aykanat and
Fikret Er{\c{c}}al},
editor = {Arndt Bode},
title = {Parallelization of Lee's Routing Algorithm on a Hypercube Multicomputer},
booktitle = {Distributed Memory Computing, 2nd European Conference, EDMCC2, Munich,
FRG, April 22-24, 1991, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {487},
pages = {244--253},
publisher = {Springer},
year = {1991},
url = {https://doi.org/10.1007/BFb0032941},
doi = {10.1007/BFB0032941},
timestamp = {Fri, 17 Nov 2023 09:27:30 +0100},
biburl = {https://dblp.org/rec/conf/edmcc/KurcAE91.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icpp/AykanatK91,
author = {Cevdet Aykanat and
Tahsin M. Kur{\c{c}}},
title = {Efficient Parallel Maze Routing Algorithms on a Hypercube Multicomputer},
booktitle = {Proceedings of the International Conference on Parallel Processing,
{ICPP} '91, Austin, Texas, USA, August 1991. Volume {III:} Algorithms
and Applications},
pages = {224--227},
publisher = {{CRC} Press},
year = {1991},
timestamp = {Mon, 28 Jul 2014 17:06:01 +0200},
biburl = {https://dblp.org/rec/conf/icpp/AykanatK91.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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