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ORCIDBibTeX records: Yixue Li
@article{DBLP:journals/inffus/CenDLZDMJYL24,
author = {Xiaoping Cen and
Wei Dong and
Wei Lv and
Yi Zhao and
Fred Dubee and
Alexios{-}Fotios A. Mentis and
Dragomirka Jovic and
Huanming Yang and
Yixue Li},
title = {Towards interpretable imaging genomics analysis: Methodological developments
and applications},
journal = {Inf. Fusion},
volume = {102},
pages = {102032},
year = {2024},
url = {https://doi.org/10.1016/j.inffus.2023.102032},
doi = {10.1016/J.INFFUS.2023.102032},
timestamp = {Tue, 28 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/inffus/CenDLZDMJYL24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2402-18028,
author = {Xiaosong Wang and
Xiaofan Zhang and
Guotai Wang and
Junjun He and
Zhongyu Li and
Wentao Zhu and
Yi Guo and
Qi Dou and
Xiaoxiao Li and
Dequan Wang and
Liang Hong and
Qicheng Lao and
Tong Ruan and
Yukun Zhou and
Yixue Li and
Jie Zhao and
Kang Li and
Xin Sun and
Lifeng Zhu and
Shaoting Zhang},
title = {OpenMEDLab: An Open-source Platform for Multi-modality Foundation
Models in Medicine},
journal = {CoRR},
volume = {abs/2402.18028},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2402.18028},
doi = {10.48550/ARXIV.2402.18028},
eprinttype = {arXiv},
eprint = {2402.18028},
timestamp = {Wed, 10 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2402-18028.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/LiuLZ23,
author = {Yuexing Liu and
Yixue Li and
Tao Zeng},
title = {Multi-omics of extracellular vesicles: An integrative representation
of functional mediators and perspectives on lung disease study},
journal = {Frontiers Bioinform.},
volume = {3},
year = {2023},
url = {https://doi.org/10.3389/fbinf.2023.1117271},
doi = {10.3389/FBINF.2023.1117271},
timestamp = {Fri, 18 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/fbinf/LiuLZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CaoLMJLHLCZLLZ23,
author = {Ruifang Cao and
Yunchao Ling and
Jiayue Meng and
Ao Jiang and
Ruijin Luo and
Qinwen He and
Anan Li and
Yujie Chen and
Zoutao Zhang and
Feng Liu and
Yixue Li and
Guoqing Zhang},
title = {{SMDB:} a Spatial Multimodal Data Browser},
journal = {Nucleic Acids Res.},
volume = {51},
number = {{W1}},
pages = {553--559},
year = {2023},
url = {https://doi.org/10.1093/nar/gkad413},
doi = {10.1093/NAR/GKAD413},
timestamp = {Fri, 18 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/CaoLMJLHLCZLLZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/remotesensing/PengYLZ23,
author = {Bin Peng and
Jiuchun Yang and
Yixue Li and
Shuwen Zhang},
title = {Land-Use Optimization Based on Ecological Security Pattern - {A} Case
Study of Baicheng, Northeast China},
journal = {Remote. Sens.},
volume = {15},
number = {24},
pages = {5671},
year = {2023},
url = {https://doi.org/10.3390/rs15245671},
doi = {10.3390/RS15245671},
timestamp = {Sat, 10 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/remotesensing/PengYLZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpb/Li22,
author = {Yixue Li},
title = {A Beloved Bioinformatician Buddy - In Memory of Professor Weimin Zhu},
journal = {Genom. Proteom. Bioinform.},
volume = {20},
number = {6},
pages = {1037--1039},
year = {2022},
url = {https://doi.org/10.1016/j.gpb.2022.12.006},
doi = {10.1016/J.GPB.2022.12.006},
timestamp = {Thu, 15 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/gpb/Li22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/XueBZZXHZLZCZZS22,
author = {Yongbiao Xue and
Yiming Bao and
Zhang Zhang and
Wenming Zhao and
Jing{-}Fa Xiao and
Shunmin He and
Guoqing Zhang and
Yixue Li and
Guoping Zhao and
Runsheng Chen and
Jingyao Zeng and
Yadong Zhang and
Yunfei Shang and
Jialin Mai and
Shuo Shi and
Mingming Lu and
Congfan Bu and
Zhewen Zhang and
Zhenglin Du and
Yinying Wang and
Hongen Kang and
Tianyi Xu and
Lili Hao and
Peilin Jia and
Shuai Jiang and
Qiheng Qian and
Tongtong Zhu and
Wenting Zong and
Tong Jin and
Yuansheng Zhang and
Dong Zou and
Qiang Du and
Changrui Feng and
Lina Ma and
Sisi Zhang and
Anke Wang and
Lili Dong and
Yanqing Wang and
Wan Liu and
Xing Yan and
Yunchao Ling and
Zhihua Zhou and
Wang Kang and
Tao Zhang and
Shuai Ma and
Haoteng Yan and
Zunpeng Liu and
Zejun Ji and
Yusheng Cai and
Si Wang and
Moshi Song and
Jie Ren and
Qi Zhou and
Jing Qu and
Weiqi Zhang and
Guanghui Liu and
Xu Chen and
Tingting Chen and
Yanling Sun and
Caixia Yu and
Bixia Tang and
Junwei Zhu and
Shuang Zhai and
Yubin Sun and
Qiancheng Chen and
Xiaoyu Yang and
Xin Zhang and
Zhengqi Sang and
Yonggang Wang and
Yilin Zhao and
Huanxin Chen and
Li Lan and
Yingke Ma and
Yaokai Jia and
Xinchang Zheng and
Meili Chen and
Ming Chen and
Guangyi Niu and
Rong Pan and
Wei Jing and
Jian Sang and
Chang Liu and
Yujia Xiong and
Mochen Zhang and
Guoliang Wang and
Lizhi Yi and
Wei Zhao and
Song Wu and
Zhuang Xiong and
Rujiao Li and
Zheng Gong and
Lin Liu and
Zhao Li and
Qianpeng Li and
Sicheng Luo and
Jiajia Wang and
Yirong Shi and
Honghong Zhou and
Peng Zhang and
Tingrui Song and
Yanyan Li and
Fei Yang and
Mengwei Li and
Zhaohua Li and
Dongmei Tian and
Xiaonan Liu and
Cuiping Li and
Xufei Teng and
Shuhui Song and
Yang Zhang and
Ruru Chen and
Rongqin Zhang and
Feng Xu and
Yifan Wang and
Chenfen Zhou and
Haizhou Wang and
Andrew E. Teschendorff and
Yungang He and
Zhen Yang and
Lun Li and
Na Li and
Ying Cui and
Guangya Duan and
Gangao Wu and
Tianhao Huang and
Enhui Jin and
Hailong Kang and
Zhonghuang Wang and
Hua Chen and
Mingkun Li and
Wanshan Ning and
Yu Xue and
Yanhu Liu and
Qijun Zhou and
Xingyan Liu and
Longlong Zhang and
Bingyu Mao and
Shihua Zhang and
Yaping Zhang and
Guodong Wang and
Qianghui Zhu and
Xin Li and
Menghua Li and
Yuanming Liu and
Hong Luo and
Xiaoyuan Wu and
Haichun Jing and
Yitong Pan and
Leisheng Shi and
Zhixiang Zuo and
Jian Ren and
Xinxin Zhang and
Yun Xiao and
Xia Li and
Dan Liu and
Chi Zhang and
Zheng Zhao and
Tao Jiang and
Wanying Wu and
Fangqing Zhao and
Xianwen Meng and
Di Peng and
Hao Luo and
Feng Gao and
Shaofeng Lin and
Chuijie Liu and
Anyuan Guo and
Hao Yuan and
Tianhan Su and
Yong E. Zhang and
Yincong Zhou and
Guoji Guo and
Shanshan Fu and
Xiaodan Tan and
Weizhi Zhang and
Mei Luo and
Yubin Xie and
Chenwei Wang and
Xingyu Liao and
Xin Gao and
Jianxin Wang and
Guiyan Xie and
Chunhui Yuan and
Feng Tian and
Dechang Yang and
Ge Gao and
Dachao Tang and
Wenyi Wu and
Yujie Gou and
Cheng Han and
Qinghua Cui and
Xiangshang Li and
Chuan{-}Yun Li and
Xiaotong Luo},
title = {Database Resources of the National Genomics Data Center, China National
Center for Bioinformation in 2022},
journal = {Nucleic Acids Res.},
volume = {50},
number = {{D1}},
pages = {27--38},
year = {2022},
url = {https://doi.org/10.1093/nar/gkab951},
doi = {10.1093/NAR/GKAB951},
timestamp = {Mon, 04 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/XueBZZXHZLZCZZS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/quanbio/ChenWLLZH22,
author = {Weiran Chen and
Md Wahiduzzaman and
Quan Li and
Yixue Li and
Guangyong Zheng and
Tao Huang},
title = {Comparative analysis of NovaSeq 6000 and {MGISEQ} 2000 single-cell
{RNA} sequencing data},
journal = {Quant. Biol.},
volume = {10},
number = {4},
pages = {333},
year = {2022},
url = {https://doi.org/10.15302/j-qb-022-0295},
doi = {10.15302/J-QB-022-0295},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/quanbio/ChenWLLZH22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiDLSLL21,
author = {Quanxue Li and
Wentao Dai and
Jixiang Liu and
Qingqing Sang and
Yi{-}Xue Li and
Yuan{-}Yuan Li},
title = {DysRegSig: an {R} package for identifying gene dysregulations and
building mechanistic signatures in cancer},
journal = {Bioinform.},
volume = {37},
number = {3},
pages = {429--430},
year = {2021},
url = {https://doi.org/10.1093/bioinformatics/btaa688},
doi = {10.1093/BIOINFORMATICS/BTAA688},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiDLSLL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/XueB0ZXHZLZCSMZ21,
author = {Yongbiao Xue and
Yiming Bao and
Zhang Zhang and
Wenming Zhao and
Jing{-}Fa Xiao and
Shunmin He and
Guoqing Zhang and
Yixue Li and
Guoping Zhao and
Runsheng Chen and
Shuhui Song and
Lina Ma and
Dong Zou and
Dongmei Tian and
Cuiping Li and
Junwei Zhu and
Zheng Gong and
Meili Chen and
Anke Wang and
Yingke Ma and
Mengwei Li and
Xufei Teng and
Ying Cui and
Guangya Duan and
Mochen Zhang and
Tong Jin and
Chengmin Shi and
Zhenglin Du and
Yadong Zhang and
Chuandong Liu and
Rujiao Li and
Jingyao Zeng and
Lili Hao and
Shuai Jiang and
Hua Chen and
Dali Han and
Tao Zhang and
Wang Kang and
Fei Yang and
Jing Qu and
Weiqi Zhang and
Guanghui Liu and
Lin Liu and
Yang Zhang and
Guangyi Niu and
Tongtong Zhu and
Changrui Feng and
Xiaonan Liu and
Yuansheng Zhang and
Zhao Li and
Ruru Chen and
Qianpeng Li and
Zhongyi Hua and
Chao Jiang and
Ziyuan Chen and
Fangshu He and
Yuyang Zhao and
Yan Jin and
Luqi Huang and
Yuan Yuan and
Chenfen Zhou and
Qingwei Xu and
Sheng He and
Wei Ye and
Ruifang Cao and
Pengyu Wang and
Yunchao Ling and
Xing Yan and
Qingzhong Wang and
Qiang Du and
Wenting Zong and
Hongen Kang and
Zhuang Xiong and
Wendi Huan and
Sirui Zhang and
Qiguang Xia and
Xiaojuan Fan and
Zefeng Wang and
Xu Chen and
Tingting Chen and
Sisi Zhang and
Bixia Tang and
Lili Dong and
Zhewen Zhang and
Zhonghuang Wang and
Hailong Kang and
Yanqing Wang and
Song Wu and
Ming Chen and
Chang Liu and
Yujia Xiong and
Xueying Shao and
Yanyan Li and
Honghong Zhou and
Xiaomin Chen and
Yu Zheng and
Quan Kang and
Di Hao and
Lili Zhang and
Huaxia Luo and
Yajing Hao and
Peng Zhang and
Zhi Nie and
Shuhuan Yu and
Jian Sang and
Zhaohua Li and
Xiangquan Zhang and
Qing Zhou and
Shuang Zhai and
Yaping Zhang and
Guodong Wang and
Qianghui Zhu and
Xin Li and
Menghua Li and
Jun Yan and
Chen Li and
Zhennan Wang and
Xiangfeng Wang and
Yuanming Liu and
Hong Luo and
Xiaoyuan Wu and
Hai{-}Chun Jing and
Lianhe Zhao and
Jiajia Wang and
Tinrui Song and
Yi Zhao and
Furrukh Mehmood and
Shahid Ali and
Amjad Ali and
Shoaib Saleem and
Irfan Hussain and
Amir Ali Abbasi and
Zhixiang Zuo and
Jian Ren and
Xinxin Zhang and
Yun Xiao and
Xia Li and
Yiran Tu and
Yu Xue and
Wanying Wu and
Peifeng Ji and
Fangqing Zhao and
Xianwen Meng and
Di Peng and
Hao Luo and
Feng Gao and
Wanshan Ning and
Shaofeng Lin and
Teng Liu and
An{-}Yuan Guo and
Hao Yuan and
Yong E. Zhang and
Xiaodan Tan and
Weizhi Zhang and
Yubin Xie and
Chenwei Wang and
Chun{-}Jie Liu and
De{-}Chang Yang and
Feng Tian and
Ge Gao and
Dachao Tang and
Lan Yao and
Qinghua Cui and
Ni A. An and
Chuan{-}Yun Li and
Xiaotong Luo},
title = {Database Resources of the National Genomics Data Center, China National
Center for Bioinformation in 2021},
journal = {Nucleic Acids Res.},
volume = {49},
number = {Database-Issue},
pages = {D18--D28},
year = {2021},
url = {https://doi.org/10.1093/nar/gkaa1022},
doi = {10.1093/NAR/GKAA1022},
timestamp = {Wed, 13 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/XueB0ZXHZLZCSMZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/LiLBSLW20,
author = {Shiyan Li and
Hongxin Liu and
Shiyu Bian and
Xianzheng Sha and
Yixue Li and
Yin Wang},
title = {The accelerated aging model reveals critical mechanisms of late-onset
Parkinson's disease},
journal = {BioData Min.},
volume = {13},
number = {1},
pages = {4},
year = {2020},
url = {https://doi.org/10.1186/s13040-020-00215-w},
doi = {10.1186/S13040-020-00215-W},
timestamp = {Tue, 13 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/LiLBSLW20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WuDXZLL20,
author = {Leilei Wu and
Qinfang Deng and
Ze Xu and
Songwen Zhou and
Chao Li and
Yi{-}Xue Li},
title = {A novel virtual barcode strategy for accurate panel-wide variant calling
in circulating tumor {DNA}},
journal = {{BMC} Bioinform.},
volume = {21},
number = {1},
pages = {127},
year = {2020},
url = {https://doi.org/10.1186/s12859-020-3412-2},
doi = {10.1186/S12859-020-3412-2},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/WuDXZLL20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpb/SunLPYCLZ20,
author = {Yidi Sun and
Chen Li and
Shichao Pang and
Qianlan Yao and
Luonan Chen and
Yixue Li and
Rong Zeng},
title = {Kinase-substrate Edge Biomarkers Provide {A} More Accurate Prognostic
Prediction in ER-negative Breast Cancer},
journal = {Genom. Proteom. Bioinform.},
volume = {18},
number = {5},
pages = {525--538},
year = {2020},
url = {https://doi.org/10.1016/j.gpb.2019.11.012},
doi = {10.1016/J.GPB.2019.11.012},
timestamp = {Mon, 25 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/gpb/SunLPYCLZ20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SunGL0C0XLLY20,
author = {Hong Sun and
Yangfan Guo and
Xiaoping Lan and
Jia Jia and
Xiaoshu Cai and
Guoqing Zhang and
Jingjing Xie and
Qian Liang and
Yixue Li and
Guangjun Yu},
title = {PhenoModifier: a genetic modifier database for elucidating the genetic
basis of human phenotypic variation},
journal = {Nucleic Acids Res.},
volume = {48},
number = {Database-Issue},
pages = {D977--D982},
year = {2020},
url = {https://doi.org/10.1093/nar/gkz930},
doi = {10.1093/NAR/GKZ930},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SunGL0C0XLLY20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/quanbio/PangYZLW19,
author = {Shichao Pang and
Junchen Yang and
Yilei Zhao and
Yixue Li and
Jingfang Wang},
title = {Computational prediction and functional analysis of arsenic-binding
proteins in human cells},
journal = {Quant. Biol.},
volume = {7},
number = {3},
pages = {182--189},
year = {2019},
url = {https://doi.org/10.1007/s40484-019-0169-6},
doi = {10.1007/S40484-019-0169-6},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/quanbio/PangYZLW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/ZhouXBWL18,
author = {Lu Zhou and
Qingyu Xiao and
Jie Bi and
Zhen Wang and
Yixue Li},
title = {RabGTD: a comprehensive database of rabbit genome and transcriptome},
journal = {Database J. Biol. Databases Curation},
volume = {2018},
pages = {bay075},
year = {2018},
url = {https://doi.org/10.1093/database/bay075},
doi = {10.1093/DATABASE/BAY075},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/ZhouXBWL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/DaiLLLL18,
author = {Wentao Dai and
Quanxue Li and
Bing{-}Ya Liu and
Yi{-}Xue Li and
Yuan{-}Yuan Li},
title = {Differential networking meta-analysis of gastric cancer across Asian
and American racial groups},
journal = {{BMC} Syst. Biol.},
volume = {12},
number = {4},
pages = {17--28},
year = {2018},
url = {https://doi.org/10.1186/s12918-018-0564-z},
doi = {10.1186/S12918-018-0564-Z},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/DaiLLLL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/artmed/LiYZWL17,
author = {Zhen Li and
Qianlan Yao and
Songjian Zhao and
Zhen Wang and
Yixue Li},
title = {Protein coding gene {CRNKL1} as a potential prognostic biomarker in
esophageal adenocarcinoma},
journal = {Artif. Intell. Medicine},
volume = {76},
pages = {1--6},
year = {2017},
url = {https://doi.org/10.1016/j.artmed.2017.01.002},
doi = {10.1016/J.ARTMED.2017.01.002},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/artmed/LiYZWL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/artmed/LiLDLL17,
author = {Quanxue Li and
Junyi Li and
Wentao Dai and
Yi{-}Xue Li and
Yuan{-}Yuan Li},
title = {Differential regulation analysis reveals dysfunctional regulatory
mechanism involving transcription factors and microRNAs in gastric
carcinogenesis},
journal = {Artif. Intell. Medicine},
volume = {77},
pages = {12--22},
year = {2017},
url = {https://doi.org/10.1016/j.artmed.2017.02.006},
doi = {10.1016/J.ARTMED.2017.02.006},
timestamp = {Thu, 20 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/artmed/LiLDLL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijcbdd/LiDL17,
author = {Ru{-}Dong Li and
Guohui Ding and
Yixue Li},
title = {Virtualisation of gene knockout experiments based on kinetic modelling:
Escherichia coli as an algorithmic case},
journal = {Int. J. Comput. Biol. Drug Des.},
volume = {10},
number = {2},
pages = {157--188},
year = {2017},
url = {https://doi.org/10.1504/IJCBDD.2017.10004578},
doi = {10.1504/IJCBDD.2017.10004578},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijcbdd/LiDL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/quanbio/WangWL17,
author = {Zhen Wang and
Zefeng Wang and
Yixue Li},
title = {Strategic planning for national biomedical big data infrastructure
in China},
journal = {Quant. Biol.},
volume = {5},
number = {3},
pages = {272--275},
year = {2017},
url = {https://doi.org/10.1007/s40484-017-0114-5},
doi = {10.1007/S40484-017-0114-5},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/quanbio/WangWL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuGWLFDL16,
author = {Zhi Liu and
Tuantuan Gui and
Zhen Wang and
Hong Li and
Yunhe Fu and
Xiao Dong and
Yixue Li},
title = {cisASE: a likelihood-based method for detecting putative \emph{cis}-regulated
allele-specific expression in {RNA} sequencing data},
journal = {Bioinform.},
volume = {32},
number = {21},
pages = {3291--3297},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw416},
doi = {10.1093/BIOINFORMATICS/BTW416},
timestamp = {Tue, 28 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuGWLFDL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/YangWYPWWSQLL16,
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Shao{-}You Yang and
Jia{-}Wei Peng and
Shi{-}Nuo Wang and
Fu{-}Yan Wang and
Yu{-}Xing Song and
Ting Qi and
Yi{-}Xue Li and
Yuan{-}Yuan Li},
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timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/YangWYPWWSQLL16.bib},
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Liang{-}Xiao Ma and
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author = {Su{-}Juan Wu and
Junyi Li and
Mushui Cao and
Jing Yang and
Yi{-}Xue Li and
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title = {A novel integrated gene coexpression analysis approach reveals a prognostic
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number = {{S-3}},
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author = {Yi{-}Xue Li},
editor = {Tianhai Tian and
Qinghua Jiang and
Yunlong Liu and
Kevin Burrage and
Jiangning Song and
Yadong Wang and
Xiaohua Hu and
Shinichi Morishita and
Qian Zhu and
Guohua Wang},
title = {Whole genome sequencing of disease animal models},
booktitle = {{IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2016, Shenzhen, China, December 15-18, 2016},
pages = {2},
publisher = {{IEEE} Computer Society},
year = {2016},
url = {https://doi.org/10.1109/BIBM.2016.7822475},
doi = {10.1109/BIBM.2016.7822475},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/Li16.bib},
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author = {Yingli Lv and
Shuyuan Wang and
Fanlin Meng and
Lei Yang and
Zhifeng Wang and
Jing Wang and
Xiaowen Chen and
Wei Jiang and
Yixue Li and
Xia Li},
title = {Identifying novel associations between small molecules and miRNAs
based on integrated molecular networks},
journal = {Bioinform.},
volume = {31},
number = {22},
pages = {3638--3644},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv417},
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author = {Jing Yang and
Su{-}Juan Wu and
Yi{-}Xue Li and
Yuan{-}Yuan Li},
title = {DSviaDRM: an {R} package for estimating disease similarity via dysfunctional
regulation mechanism},
journal = {Bioinform.},
volume = {31},
number = {23},
pages = {3870--3872},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv474},
doi = {10.1093/BIOINFORMATICS/BTV474},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
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author = {Hong Sun and
Shuang Yang and
Liangliang Tun and
Yixue Li},
title = {IAOseq: inferring abundance of overlapping genes using RNA-seq data},
journal = {{BMC} Bioinform.},
volume = {16},
number = {{S-1}},
pages = {S3},
year = {2015},
url = {https://doi.org/10.1186/1471-2105-16-S1-S3},
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author = {Bo Sun and
Menghuan Zhang and
Peng Cui and
Hong Li and
Jia Jia Dong and
Yixue Li and
Lu Xie},
title = {Nonsynonymous Single-Nucleotide Variations on Some Posttranslational
Modifications of Human Proteins and the Association with Diseases},
journal = {Comput. Math. Methods Medicine},
volume = {2015},
pages = {124630:1--124630:12},
year = {2015},
url = {https://doi.org/10.1155/2015/124630},
doi = {10.1155/2015/124630},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
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author = {Tiancheng Liu and
Lin Yu and
Lei Liu and
Hong Li and
Yixue Li},
title = {Comparative Transcriptomes and {EVO-DEVO} Studies Depending on Next
Generation Sequencing},
journal = {Comput. Math. Methods Medicine},
volume = {2015},
pages = {896176:1--896176:10},
year = {2015},
url = {https://doi.org/10.1155/2015/896176},
doi = {10.1155/2015/896176},
timestamp = {Tue, 28 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cmmm/LiuYLLL15.bib},
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author = {Tuantuan Gui and
Xiao Dong and
Ru{-}Dong Li and
Yixue Li and
Zhen Wang},
title = {Identification of Hepatocellular Carcinoma-Related Genes with a Machine
Learning and Network Analysis},
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number = {1},
pages = {63--71},
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timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/GuiDLLW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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author = {Jing Li and
Jia Jia and
Hong Li and
Jian Yu and
Han Sun and
Ying He and
Daqing Lv and
Xiaojuan Yang and
Michael O. Glocker and
Liang{-}Xiao Ma and
Jiabei Yang and
Ling Li and
Wei Li and
Guoqing Zhang and
Qian Liu and
Yixue Li and
Lu Xie},
title = {SysPTM 2.0: an updated systematic resource for post-translational
modification},
journal = {Database J. Biol. Databases Curation},
volume = {2014},
year = {2014},
url = {https://doi.org/10.1093/database/bau025},
doi = {10.1093/DATABASE/BAU025},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/LiJLYSHLYGMYLLZLLX14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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author = {Chao Li and
Xiao Dong and
Haiwei Fan and
Chuan Wang and
Guohui Ding and
Yixue Li},
title = {The 3DGD: a database of genome 3D structure},
journal = {Bioinform.},
volume = {30},
number = {11},
pages = {1640--1642},
year = {2014},
url = {https://doi.org/10.1093/bioinformatics/btu081},
doi = {10.1093/BIOINFORMATICS/BTU081},
timestamp = {Wed, 13 Jan 2021 00:00:00 +0100},
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author = {Yixue Li and
Luonan Chen},
title = {Big Biological Data: Challenges and Opportunities},
journal = {Genom. Proteom. Bioinform.},
volume = {12},
number = {5},
pages = {187--189},
year = {2014},
url = {https://doi.org/10.1016/j.gpb.2014.10.001},
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author = {Huayong Xu and
Hui Yu and
Kang Tu and
Qianqian Shi and
Chaochun Wei and
Yuan{-}Yuan Li and
Yi{-}Xue Li},
title = {cGRNB: a web server for building combinatorial gene regulatory networks
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number = {{S-2}},
pages = {S7},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-S2-S7},
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timestamp = {Thu, 27 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/XuYTSWLL13.bib},
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author = {Shan Cong and
Xiao{-}Tu Ma and
Yi{-}Xue Li and
Jing{-}Fang Wang},
title = {Structural Basis for the Mutation-Induced Dysfunction of Human {CYP2J2:}
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number = {6},
pages = {1350--1357},
year = {2013},
url = {https://doi.org/10.1021/ci400003p},
doi = {10.1021/CI400003P},
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author = {Adhemar Zerlotini and
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Fudong Yu and
Huayong Xu and
Yixue Li and
Neil D. Young and
Robin B. Gasser and
Anna V. Protasio and
Matthew Berriman and
David S. Roos and
Jessica C. Kissinger and
Guilherme C. Oliveira},
title = {SchistoDB: an updated genome resource for the three key schistosomes
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author = {Piyush Diwan and
Patricia Carey and
Eric Franz and
Yixue Li and
Thomas Bitterman and
David E. Hudak and
Rajiv Ramnath},
editor = {Sung Y. Shin and
Jos{\'{e}} Carlos Maldonado},
title = {Applying software product line engineering in building web portals
for supercomputing services},
booktitle = {Proceedings of the 28th Annual {ACM} Symposium on Applied Computing,
{SAC} '13, Coimbra, Portugal, March 18-22, 2013},
pages = {1765--1771},
publisher = {{ACM}},
year = {2013},
url = {https://doi.org/10.1145/2480362.2480694},
doi = {10.1145/2480362.2480694},
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author = {Hui Yu and
Kang Tu and
Yi{-}Jie Wang and
Jun{-}Zhe Mao and
Lu Xie and
Yuan{-}Yuan Li and
Yi{-}Xue Li},
title = {Combinatorial network of transcriptional regulation and microRNA regulation
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pages = {61},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-61},
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timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/YuTWMXLL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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author = {Chuanli Wang and
Longyun Guo and
Yixue Li and
Zhuo Wang},
title = {Systematic Comparison of {C3} and {C4} Plants Based on Metabolic Network
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volume = {6},
number = {{S-2}},
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year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-S2-S9},
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author = {Yin Wang and
Yuhua Zhou and
Yixue Li and
Zongxin Ling and
Yan Zhu and
Xiaokui Guo and
Hong Sun},
title = {An improved dimensionality reduction method for meta-transcriptome
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year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-S3-S12},
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timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/WangZLLZGS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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author = {Shu{-}Hao Yu and
Lulu Zheng and
Yun Li and
Chunyan Li and
Chenchen Ma and
Yixue Li and
Xuan Li and
Pei Hao},
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bibsource = {dblp computer science bibliography, https://dblp.org}
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author = {Yajun Wang and
Yao Yu and
Bohu Pan and
Pei Hao and
Yixue Li and
Zhifeng Shao and
Xiaogang Xu and
Xuan Li},
title = {Optimizing hybrid assembly of next-generation sequence data from Enterococcus
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timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
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bibsource = {dblp computer science bibliography, https://dblp.org}
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author = {Ying Wang and
Xiaolin Wu and
Dong{-}Qing Wei and
Yi{-}Xue Li and
Jing{-}Fang Wang},
title = {Autoinhibitory Mechanism for the Mutation-Induced Impaired {FGF9}
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author = {Ying He and
Menghuan Zhang and
Yuanhu Ju and
Zhong{-}Hao Yu and
Daqing Lv and
Han Sun and
Weilan Yuan and
Fei He and
Jianshe Zhang and
Hong Li and
Jing Li and
Rui Wang{-}Sattler and
Yixue Li and
Guoqing Zhang and
Lu Xie},
title = {dbDEPC 2.0: updated database of differentially expressed proteins
in human cancers},
journal = {Nucleic Acids Res.},
volume = {40},
number = {Database-Issue},
pages = {964--971},
year = {2012},
url = {https://doi.org/10.1093/nar/gkr936},
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timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/HeZJYLSYHZLLWLZX12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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author = {Xin Zhao and
Qi Liu and
Qingqing Cai and
Yanyun Li and
Congjian Xu and
Yixue Li and
Zuofeng Li and
Xiaoyan Zhang},
title = {Dr.VIS: a database of human disease-related viral integration sites},
journal = {Nucleic Acids Res.},
volume = {40},
number = {Database-Issue},
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year = {2012},
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bibsource = {dblp computer science bibliography, https://dblp.org}
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author = {Huayong Xu and
Hui Yu and
Kang Tu and
Qianqian Shi and
Chaochun Wei and
Yuanyuan Li and
Yixue Li},
title = {cGRNexp: a web platform for building combinatorial gene regulation
networks based on user-uploaded gene expression datasets},
booktitle = {6th {IEEE} International Conference on Systems Biology, {ISB} 2012,
Xian, China, August 18-20, 2012},
pages = {113--117},
publisher = {{IEEE}},
year = {2012},
url = {https://doi.org/10.1109/ISB.2012.6314122},
doi = {10.1109/ISB.2012.6314122},
timestamp = {Thu, 27 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/isb/XuYTSWLL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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author = {Bin Kang and
Yuan{-}Yuan Li and
Yixue Li},
title = {Anti-clustering of circadian gene expression in mouse liver genome},
booktitle = {6th {IEEE} International Conference on Systems Biology, {ISB} 2012,
Xian, China, August 18-20, 2012},
pages = {273--279},
publisher = {{IEEE}},
year = {2012},
url = {https://doi.org/10.1109/ISB.2012.6314149},
doi = {10.1109/ISB.2012.6314149},
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biburl = {https://dblp.org/rec/conf/isb/KangLL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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author = {Qianghu Wang and
Jie Sun and
Meng Zhou and
Haixiu Yang and
Yan Li and
Xiang Li and
Sali Lv and
Xia Li and
Yixue Li},
title = {A novel network-based method for measuring the functional relationship
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journal = {Bioinform.},
volume = {27},
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timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
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bibsource = {dblp computer science bibliography, https://dblp.org}
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author = {Kailin Tang and
Ruixin Zhu and
Yixue Li and
Zhi{-}Wei Cao},
title = {Discrimination of Approved Drugs from Experimental Drugs by Learning
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journal = {{BMC} Bioinform.},
volume = {12},
pages = {157},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-157},
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biburl = {https://dblp.org/rec/journals/bmcbi/TangZLC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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author = {Hui Yu and
Bao{-}Hong Liu and
Zhi{-}Qiang Ye and
Chun Li and
Yi{-}Xue Li and
Yuan{-}Yuan Li},
title = {Link-based Quantitative Methods to Identify Differentially Coexpressed
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journal = {{BMC} Bioinform.},
volume = {12},
pages = {315},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-315},
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biburl = {https://dblp.org/rec/journals/bmcbi/YuLYLLL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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author = {Yan Ji and
Yixiang Shi and
Guohui Ding and
Yixue Li},
title = {A new strategy for better genome assembly from very short reads},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {493},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-493},
doi = {10.1186/1471-2105-12-493},
timestamp = {Wed, 13 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JiSDL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhengWWL11,
author = {Guangyong Zheng and
Haibo Wang and
Chaochun Wei and
Yixue Li},
title = {iGepros: an integrated gene and protein annotation server for biological
nature exploration},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-14}},
pages = {S6},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S14-S6},
doi = {10.1186/1471-2105-12-S14-S6},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhengWWL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/LiLLRLL11,
author = {Ru{-}Dong Li and
Yuan{-}Yuan Li and
Lingyi Lu and
Cong Ren and
Yi{-}Xue Li and
Lei Liu},
title = {An improved kinetic model for the acetone-butanol-ethanol pathway
of Clostridium acetobutylicum and model-based perturbation analysis},
journal = {{BMC} Syst. Biol.},
volume = {5},
number = {{S-1}},
pages = {S12},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-S1-S12},
doi = {10.1186/1752-0509-5-S1-S12},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/LiLLRLL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijcbdd/HuangLLDTTLDX11,
author = {Tao Huang and
Lei Liu and
Qi Liu and
Guohui Ding and
Yejun Tan and
Zhidong Tu and
Yixue Li and
Hongyue Dai and
Lu Xie},
title = {The role of Hepatitis {C} Virus in the dynamic protein interaction
networks of hepatocellular cirrhosis and carcinoma},
journal = {Int. J. Comput. Biol. Drug Des.},
volume = {4},
number = {1},
pages = {5--18},
year = {2011},
url = {https://doi.org/10.1504/IJCBDD.2011.038654},
doi = {10.1504/IJCBDD.2011.038654},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ijcbdd/HuangLLDTTLDX11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/LiTZWLHL11,
author = {Yun Li and
Kang Tu and
Siyuan Zheng and
Jingfang Wang and
Yixue Li and
Pei Hao and
Xuan Li},
title = {Association of Feature Gene Expression with Structural Fingerprints
of Chemical Compounds},
journal = {J. Bioinform. Comput. Biol.},
volume = {9},
number = {4},
pages = {503--519},
year = {2011},
url = {https://doi.org/10.1142/S0219720011005446},
doi = {10.1142/S0219720011005446},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/LiTZWLHL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/LiWWL11,
author = {Jue Li and
Dong{-}Qing Wei and
Jing{-}Fang Wang and
Yi{-}Xue Li},
title = {A Negative Cooperativity Mechanism of Human {CYP2E1} Inferred from
Molecular Dynamics Simulations and Free Energy Calculations},
journal = {J. Chem. Inf. Model.},
volume = {51},
number = {12},
pages = {3217--3225},
year = {2011},
url = {https://doi.org/10.1021/ci2004016},
doi = {10.1021/CI2004016},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcisd/LiWWL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HuangZCWLCWSZWLLCCZ11,
author = {Zhimin Huang and
Liang Zhu and
Yan Cao and
Geng Wu and
Xinyi Liu and
Yingyi Chen and
Qi Wang and
Ting Shi and
Yaxue Zhao and
Yuefei Wang and
Weihua Li and
Yixue Li and
Haifeng Chen and
Guoqiang Chen and
Jian Zhang},
title = {{ASD:} a comprehensive database of allosteric proteins and modulators},
journal = {Nucleic Acids Res.},
volume = {39},
number = {Database-Issue},
pages = {663--669},
year = {2011},
url = {https://doi.org/10.1093/nar/gkq1022},
doi = {10.1093/NAR/GKQ1022},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/HuangZCWLCWSZWLLCCZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/YeYKZTTLZLCLC11,
author = {Hao Ye and
Li Ye and
Hong Kang and
Duanfeng Zhang and
Lin Tao and
Kailin Tang and
Xueping Liu and
Ruixin Zhu and
Qi Liu and
Yu Zong Chen and
Yixue Li and
Zhi{-}Wei Cao},
title = {{HIT:} linking herbal active ingredients to targets},
journal = {Nucleic Acids Res.},
volume = {39},
number = {Database-Issue},
pages = {1055--1059},
year = {2011},
url = {https://doi.org/10.1093/nar/gkq1165},
doi = {10.1093/NAR/GKQ1165},
timestamp = {Sun, 12 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/YeYKZTTLZLCLC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icic/FengGFLL11,
author = {Kaiyan Feng and
Junhui Gao and
Kairui Feng and
Lei Liu and
Yixue Li},
editor = {De{-}Shuang Huang and
Yong Gan and
Phalguni Gupta and
M. Michael Gromiha},
title = {Active and Passive Nearest Neighbor Algorithm: {A} Newly-Developed
Supervised Classifier},
booktitle = {Advanced Intelligent Computing Theories and Applications. With Aspects
of Artificial Intelligence - 7th International Conference, {ICIC}
2011, Zhengzhou, China, August 11-14, 2011, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {6839},
pages = {189--196},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-25944-9\_25},
doi = {10.1007/978-3-642-25944-9\_25},
timestamp = {Sun, 02 Jun 2019 21:22:55 +0200},
biburl = {https://dblp.org/rec/conf/icic/FengGFLL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@book{DBLP:books/daglib/0025928,
editor = {Limin Angela Liu and
Dong{-}Qing Wei and
Yixue Li and
Huimin Lei},
title = {Handbook of Research on Computational and Systems Biology - Interdisciplinary
Applications},
publisher = {{IGI} Global},
year = {2011},
url = {https://doi.org/10.4018/978-1-60960-491-2},
doi = {10.4018/978-1-60960-491-2},
isbn = {978-1-60960-491-2},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/books/daglib/0025928.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuYTLLL10,
author = {Bao{-}Hong Liu and
Hui Yu and
Kang Tu and
Chun Li and
Yi{-}Xue Li and
Yuan{-}Yuan Li},
title = {{DCGL:} an {R} package for identifying differentially coexpressed
genes and links from gene expression microarray data},
journal = {Bioinform.},
volume = {26},
number = {20},
pages = {2637--2638},
year = {2010},
url = {https://doi.org/10.1093/bioinformatics/btq471},
doi = {10.1093/BIOINFORMATICS/BTQ471},
timestamp = {Thu, 27 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuYTLLL10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChenYLL10,
author = {Yun{-}Qin Chen and
Hui Yu and
Yi{-}Xue Li and
Yuan{-}Yuan Li},
title = {Sorting out inherent features of head-to-head gene pairs by evolutionary
conservation},
journal = {{BMC} Bioinform.},
volume = {11},
number = {{S-11}},
pages = {S16},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-S11-S16},
doi = {10.1186/1471-2105-11-S11-S16},
timestamp = {Thu, 27 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ChenYLL10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiuTHDTLLDX10,
author = {Qi Liu and
Yejun Tan and
Tao Huang and
Guohui Ding and
Zhidong Tu and
Lei Liu and
Yixue Li and
Hongyue Dai and
Lu Xie},
title = {TF-centered downstream gene set enrichment analysis: Inference of
causal regulators by integrating {TF-DNA} interactions and protein
post-translational modifications information},
journal = {{BMC} Bioinform.},
volume = {11},
number = {{S-11}},
pages = {S5},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-S11-S5},
doi = {10.1186/1471-2105-11-S11-S5},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiuTHDTLLDX10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ShiLL10,
author = {Yixiang Shi and
Yi{-}Xue Li and
Yuan{-}Yuan Li},
title = {Large number of phosphotransferase genes in the Clostridium beijerinckii
{NCIMB} 8052 genome and the study on their evolution},
journal = {{BMC} Bioinform.},
volume = {11},
number = {{S-11}},
pages = {S9},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-S11-S9},
doi = {10.1186/1471-2105-11-S11-S9},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ShiLL10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LiHDWXL10,
author = {Hong Li and
Ying He and
Guohui Ding and
Chuan Wang and
Lu Xie and
Yixue Li},
title = {dbDEPC: a database of Differentially Expressed Proteins in human Cancers},
journal = {Nucleic Acids Res.},
volume = {38},
number = {Database-Issue},
pages = {658--664},
year = {2010},
url = {https://doi.org/10.1093/nar/gkp933},
doi = {10.1093/NAR/GKP933},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/LiHDWXL10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/HuangDLLTDLTX10,
author = {Tao Huang and
Guohui Ding and
Yixue Li and
Lei Liu and
Eugene Tan and
Hongyue Dai and
Qi Liu and
Zhidong Tu and
Lu Xie},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {Dysfunctional gene/protein networks in hepatitis {C} virus-induced
hepatocellular cirrhosis and carcinoma},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {502--507},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854873},
doi = {10.1145/1854776.1854873},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/HuangDLLTDLTX10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/WangDYLL09,
author = {Zhen Wang and
Guohui Ding and
Zhong{-}Hao Yu and
Lei Liu and
Yixue Li},
title = {CHSMiner: a {GUI} tool to identify chromosomal homologous segments},
journal = {Algorithms Mol. Biol.},
volume = {4},
year = {2009},
url = {https://doi.org/10.1186/1748-7188-4-2},
doi = {10.1186/1748-7188-4-2},
timestamp = {Wed, 13 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/almob/WangDYLL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/YuYZSCLL09,
author = {Hui Yu and
Fudong Yu and
Guoqing Zhang and
Xiang Shen and
Yun{-}Qin Chen and
Yuan{-}Yuan Li and
Yi{-}Xue Li},
title = {{DBH2H:} vertebrate head-to-head gene pairs annotated at genomic and
post-genomic levels},
journal = {Database J. Biol. Databases Curation},
volume = {2009},
year = {2009},
url = {https://doi.org/10.1093/database/bap006},
doi = {10.1093/DATABASE/BAP006},
timestamp = {Thu, 27 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/YuYZSCLL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiDXL09,
author = {Hong Li and
Guohui Ding and
Lu Xie and
Yixue Li},
title = {PAnnBuilder: an {R} package for assembling proteomic annotation data},
journal = {Bioinform.},
volume = {25},
number = {8},
pages = {1094--1095},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp100},
doi = {10.1093/BIOINFORMATICS/BTP100},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiDXL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HaoZPTGWZL09,
author = {Pei Hao and
Siyuan Zheng and
Jie Ping and
Kang Tu and
Christian Gieger and
Rui Wang{-}Sattler and
Yang Zhong and
Yixue Li},
title = {Human gene expression sensitivity according to large scale meta-analysis},
journal = {{BMC} Bioinform.},
volume = {10},
number = {{S-1}},
year = {2009},
url = {https://doi.org/10.1186/1471-2105-10-S1-S56},
doi = {10.1186/1471-2105-10-S1-S56},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/HaoZPTGWZL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YuTZLDPHL09,
author = {Yao Yu and
Kang Tu and
Siyuan Zheng and
Yun Li and
Guohui Ding and
Jie Ping and
Pei Hao and
Yixue Li},
title = {{GEOGLE:} context mining tool for the correlation between gene expression
and the phenotypic distinction},
journal = {{BMC} Bioinform.},
volume = {10},
pages = {264},
year = {2009},
url = {https://doi.org/10.1186/1471-2105-10-264},
doi = {10.1186/1471-2105-10-264},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/YuTZLDPHL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/LiALRST09,
author = {Yong Fuga Li and
Randy J. Arnold and
Yixue Li and
Predrag Radivojac and
Quanhu Sheng and
Haixu Tang},
title = {A Bayesian Approach to Protein Inference Problem in Shotgun Proteomics},
journal = {J. Comput. Biol.},
volume = {16},
number = {8},
pages = {1183--1193},
year = {2009},
url = {https://doi.org/10.1089/cmb.2009.0018},
doi = {10.1089/CMB.2009.0018},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/LiALRST09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/DingLKLT09,
author = {Guohui Ding and
Peter Lorenz and
Michael Kreutzer and
Yixue Li and
Hans{-}J{\"{u}}rgen Thiesen},
title = {SysZNF: the {C2H2} zinc finger gene database},
journal = {Nucleic Acids Res.},
volume = {37},
number = {Database-Issue},
pages = {267--273},
year = {2009},
url = {https://doi.org/10.1093/nar/gkn782},
doi = {10.1093/NAR/GKN782},
timestamp = {Wed, 13 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/DingLKLT09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LiPLLWWLZ09,
author = {Su{-}Jun Li and
Mao Peng and
Hong Li and
Boshu Liu and
Chuan Wang and
Jia{-}Rui Wu and
Yi{-}Xue Li and
Rong Zeng},
title = {Sys-BodyFluid: a systematical database for human body fluid proteome
research},
journal = {Nucleic Acids Res.},
volume = {37},
number = {Database-Issue},
pages = {907--912},
year = {2009},
url = {https://doi.org/10.1093/nar/gkn849},
doi = {10.1093/NAR/GKN849},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LiPLLWWLZ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/XiPDLL09,
author = {Hong Xi and
Jongsun Park and
Guohui Ding and
Yong{-}Hwan Lee and
Yixue Li},
title = {SysPIMP: the web-based systematical platform for identifying human
disease-related mutated sequences from mass spectrometry},
journal = {Nucleic Acids Res.},
volume = {37},
number = {Database-Issue},
pages = {913--920},
year = {2009},
url = {https://doi.org/10.1093/nar/gkn848},
doi = {10.1093/NAR/GKN848},
timestamp = {Wed, 13 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/XiPDLL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AlvesACLRSTXZR08,
author = {Pedro Alves and
Randy J. Arnold and
David E. Clemmer and
Yixue Li and
James P. Reilly and
Quanhu Sheng and
Haixu Tang and
Zhiyin Xun and
Rong Zeng and
Predrag Radivojac},
title = {Fast and accurate identification of semi-tryptic peptides in shotgun
proteomics},
journal = {Bioinform.},
volume = {24},
number = {1},
pages = {102--109},
year = {2008},
url = {https://doi.org/10.1093/bioinformatics/btm545},
doi = {10.1093/BIOINFORMATICS/BTM545},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AlvesACLRSTXZR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhengSWWYLMDZHLL08,
author = {Siyuan Zheng and
Jia Sheng and
Chuan Wang and
Xiaojing Wang and
Yao Yu and
Yun Li and
Alex Michie and
Jianliang Dai and
Yang Zhong and
Pei Hao and
Lei Liu and
Yixue Li},
title = {{MPSQ:} a web tool for protein-state searching},
journal = {Bioinform.},
volume = {24},
number = {20},
pages = {2412--2413},
year = {2008},
url = {https://doi.org/10.1093/bioinformatics/btn427},
doi = {10.1093/BIOINFORMATICS/BTN427},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhengSWWYLMDZHLL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhengTYXWXZL08,
author = {Guangyong Zheng and
Kang Tu and
Qing Yang and
Yun Xiong and
Chaochun Wei and
Lu Xie and
Yangyong Zhu and
Yixue Li},
title = {{ITFP:} an integrated platform of mammalian transcription factors},
journal = {Bioinform.},
volume = {24},
number = {20},
pages = {2416--2417},
year = {2008},
url = {https://doi.org/10.1093/bioinformatics/btn439},
doi = {10.1093/BIOINFORMATICS/BTN439},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhengTYXWXZL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/XuSLZLL08,
author = {Qingwei Xu and
Yixiang Shi and
Qiang Lu and
Guoqing Zhang and
Qing{-}ming Luo and
Yixue Li},
title = {GORouter: an {RDF} model for providing semantic query and inference
services for Gene Ontology and its associations},
journal = {{BMC} Bioinform.},
volume = {9},
number = {{S-1}},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-S1-S6},
doi = {10.1186/1471-2105-9-S1-S6},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/XuSLZLL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WangWZSTLC08,
author = {Xiaojing Wang and
Di Wu and
Siyuan Zheng and
Jing Sun and
Lin Tao and
Yixue Li and
Zhi{-}Wei Cao},
title = {Ab-origin: an enhanced tool to identify the sourcing gene segments
in germline for rearranged antibodies},
journal = {{BMC} Bioinform.},
volume = {9},
number = {{S-12}},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-S12-S20},
doi = {10.1186/1471-2105-9-S12-S20},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/WangWZSTLC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhengQYWXZL08,
author = {Guangyong Zheng and
Ziliang Qian and
Qing Yang and
Chaochun Wei and
Lu Xie and
Yangyong Zhu and
Yixue Li},
title = {The combination approach of {SVM} and {ECOC} for powerful identification
and classification of transcription factor},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-282},
doi = {10.1186/1471-2105-9-282},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhengQYWXZL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/DingSLWFWYL08,
author = {Guohui Ding and
Yan Sun and
Hong Li and
Zhen Wang and
Haiwei Fan and
Chuan Wang and
Dan Yang and
Yixue Li},
title = {{EPGD:} a comprehensive web resource for integrating and displaying
eukaryotic paralog/paralogon information},
journal = {Nucleic Acids Res.},
volume = {36},
number = {Database-Issue},
pages = {255--262},
year = {2008},
url = {https://doi.org/10.1093/nar/gkm924},
doi = {10.1093/NAR/GKM924},
timestamp = {Wed, 13 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/DingSLWFWYL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CuiLLXZLYWYLS08,
author = {Jian Cui and
Peng Li and
Guang Li and
Feng Xu and
Chen Zhao and
Yuhua Li and
Zhongnan Yang and
Guang Wang and
Qingbo Yu and
Yi{-}Xue Li and
Tieliu Shi},
title = {AtPID: \emph{Arabidopsis thaliana} protein interactome database -
an integrative platform for plant systems biology},
journal = {Nucleic Acids Res.},
volume = {36},
number = {Database-Issue},
pages = {999--1008},
year = {2008},
url = {https://doi.org/10.1093/nar/gkm844},
doi = {10.1093/NAR/GKM844},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/CuiLLXZLYWYLS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/KangLCLL08,
author = {Bin Kang and
Yuan{-}Yuan Li and
Xiao Chang and
Lei Liu and
Yi{-}Xue Li},
title = {Modeling the Effects of Cell Cycle M-phase Transcriptional Inhibition
on Circadian Oscillation},
journal = {PLoS Comput. Biol.},
volume = {4},
number = {3},
year = {2008},
url = {https://doi.org/10.1371/journal.pcbi.1000019},
doi = {10.1371/JOURNAL.PCBI.1000019},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/KangLCLL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LiALRST08,
author = {Yong Fuga Li and
Randy J. Arnold and
Yixue Li and
Predrag Radivojac and
Quanhu Sheng and
Haixu Tang},
editor = {Martin Vingron and
Limsoon Wong},
title = {A Bayesian Approach to Protein Inference Problem in Shotgun Proteomics},
booktitle = {Research in Computational Molecular Biology, 12th Annual International
Conference, {RECOMB} 2008, Singapore, March 30 - April 2, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4955},
pages = {167--180},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-78839-3\_15},
doi = {10.1007/978-3-540-78839-3\_15},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LiALRST08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/QianLLCL07,
author = {Ziliang Qian and
Lingyi Lu and
Xiao{-}Jun Liu and
Yu{-}Dong Cai and
Yixue Li},
title = {An approach to predict transcription factor {DNA} binding site specificity
based upon gene and transcription factor functional categorization},
journal = {Bioinform.},
volume = {23},
number = {18},
pages = {2449--2454},
year = {2007},
url = {https://doi.org/10.1093/bioinformatics/btm348},
doi = {10.1093/BIOINFORMATICS/BTM348},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/QianLLCL07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SunSDLWHSLZ07,
author = {Jingchun Sun and
Yan Sun and
Guohui Ding and
Qi Liu and
Chuan Wang and
Youyu He and
Tieliu Shi and
Yixue Li and
Zhongming Zhao},
title = {InPrePPI: an integrated evaluation method based on genomic context
for predicting protein-protein interactions in prokaryotic genomes},
journal = {{BMC} Bioinform.},
volume = {8},
year = {2007},
url = {https://doi.org/10.1186/1471-2105-8-414},
doi = {10.1186/1471-2105-8-414},
timestamp = {Wed, 25 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/SunSDLWHSLZ07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YuWTXLL07,
author = {Hui Yu and
Feng Wang and
Kang Tu and
Lu Xie and
Yuan{-}Yuan Li and
Yi{-}Xue Li},
title = {Transcript-level annotation of Affymetrix probesets improves the interpretation
of gene expression data},
journal = {{BMC} Bioinform.},
volume = {8},
year = {2007},
url = {https://doi.org/10.1186/1471-2105-8-194},
doi = {10.1186/1471-2105-8-194},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YuWTXLL07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhaoDTYYLCL07,
author = {Jing Zhao and
Guo{-}Hui Ding and
Lin Tao and
Hong Yu and
Zhong{-}Hao Yu and
Jianhua Luo and
Zhi{-}Wei Cao and
Yi{-}Xue Li},
title = {Modular co-evolution of metabolic networks},
journal = {{BMC} Bioinform.},
volume = {8},
year = {2007},
url = {https://doi.org/10.1186/1471-2105-8-311},
doi = {10.1186/1471-2105-8-311},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhaoDTYYLCL07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/candc/LuQCL07,
author = {Lingyi Lu and
Ziliang Qian and
Yu{-}Dong Cai and
Yixue Li},
title = {{ECS:} An automatic enzyme classifier based on functional domain composition},
journal = {Comput. Biol. Chem.},
volume = {31},
number = {3},
pages = {226--232},
year = {2007},
url = {https://doi.org/10.1016/j.compbiolchem.2007.03.008},
doi = {10.1016/J.COMPBIOLCHEM.2007.03.008},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/candc/LuQCL07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccS/WangWZCL07,
author = {Xiaojing Wang and
Wu Wei and
Siyuan Zheng and
Zhi{-}Wei Cao and
Yixue Li},
editor = {Yong Shi and
G. Dick van Albada and
Jack J. Dongarra and
Peter M. A. Sloot},
title = {Ab-origin: An Improved Tool of Heavy Chain Rearrangement Analysis
for Human Immunoglobulin},
booktitle = {Computational Science - {ICCS} 2007, 7th International Conference,
Beijing, China, May 27 - 30, 2007, Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {4488},
pages = {363--369},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-72586-2\_52},
doi = {10.1007/978-3-540-72586-2\_52},
timestamp = {Tue, 08 Nov 2022 08:34:34 +0100},
biburl = {https://dblp.org/rec/conf/iccS/WangWZCL07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/Li07,
author = {Yixue Li},
editor = {David K. Kahaner},
title = {Biological data integration and high-performance computing},
booktitle = {{CHINA} {HPC} 2007, Proceedings of the Asian Technology Information
Program's (ATIP's) Third Workshop on High-Performance Computing in
China: "Solution Approaches to Impediments for High Performance Computing",
Supercomputing 2007 (SC07), November 11, 2007, Reno, Nevada, {USA}},
pages = {51--61},
publisher = {{ACM} Press},
year = {2007},
url = {https://doi.org/10.1145/1375783.1375796},
doi = {10.1145/1375783.1375796},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sc/Li07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiQGLXHSSHL06,
author = {Yuan{-}Yuan Li and
Lei Qin and
Zong{-}Ming Guo and
Lei Liu and
Hao Xu and
Pei Hao and
Jiong Su and
Yixiang Shi and
Wei{-}Zhong He and
Yi{-}Xue Li},
title = {\emph{In silico }discovery of human natural antisense transcripts},
journal = {{BMC} Bioinform.},
volume = {7},
pages = {18},
year = {2006},
url = {https://doi.org/10.1186/1471-2105-7-18},
doi = {10.1186/1471-2105-7-18},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LiQGLXHSSHL06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YuWL06,
author = {Xiaojing Yu and
Chuan Wang and
Yixue Li},
title = {Classification of protein quaternary structure by functional domain
composition},
journal = {{BMC} Bioinform.},
volume = {7},
pages = {187},
year = {2006},
url = {https://doi.org/10.1186/1471-2105-7-187},
doi = {10.1186/1471-2105-7-187},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YuWL06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JiaSCL06,
author = {Peilin Jia and
Tieliu Shi and
Yudong Cai and
Yixue Li},
title = {Demonstration of two novel methods for predicting functional siRNA
efficiency},
journal = {{BMC} Bioinform.},
volume = {7},
pages = {271},
year = {2006},
url = {https://doi.org/10.1186/1471-2105-7-271},
doi = {10.1186/1471-2105-7-271},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JiaSCL06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhaoYLCL06,
author = {Jing Zhao and
Hong Yu and
Jianhua Luo and
Zhi{-}Wei Cao and
Yi{-}Xue Li},
title = {Hierarchical modularity of nested bow-ties in metabolic networks},
journal = {{BMC} Bioinform.},
volume = {7},
pages = {386},
year = {2006},
url = {https://doi.org/10.1186/1471-2105-7-386},
doi = {10.1186/1471-2105-7-386},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhaoYLCL06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/candc/LiLZCL06,
author = {Sujun Li and
Boshu Liu and
Rong Zeng and
Yudong Cai and
Yixue Li},
title = {Predicting \emph{O}-glycosylation sites in mammalian proteins by using
SVMs},
journal = {Comput. Biol. Chem.},
volume = {30},
number = {3},
pages = {203--208},
year = {2006},
url = {https://doi.org/10.1016/j.compbiolchem.2006.02.002},
doi = {10.1016/J.COMPBIOLCHEM.2006.02.002},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/candc/LiLZCL06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/candc/ZhangCLCL06,
author = {Guoqing Zhang and
Zhi{-}Wei Cao and
Qing{-}ming Luo and
Yu{-}Dong Cai and
Yixue Li},
title = {Operon prediction based on {SVM}},
journal = {Comput. Biol. Chem.},
volume = {30},
number = {3},
pages = {233--240},
year = {2006},
url = {https://doi.org/10.1016/j.compbiolchem.2006.03.002},
doi = {10.1016/J.COMPBIOLCHEM.2006.03.002},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/candc/ZhangCLCL06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijprai/ZhaoDWZL06,
author = {Xing{-}Ming Zhao and
Ji{-}Xiang Du and
Hong{-}Qiang Wang and
Yunping Zhu and
Yixue Li},
title = {A new technique for selecting features from protein sequences},
journal = {Int. J. Pattern Recognit. Artif. Intell.},
volume = {20},
number = {2},
pages = {271--283},
year = {2006},
url = {https://doi.org/10.1142/S021800140600465X},
doi = {10.1142/S021800140600465X},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijprai/ZhaoDWZL06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijprai/ZhengCLLZ06,
author = {Chun{-}Hou Zheng and
Yan Chen and
Xiu{-}Xia Li and
Yi{-}Xue Li and
Yunping Zhu},
title = {Tumor classification based on independent component analysis},
journal = {Int. J. Pattern Recognit. Artif. Intell.},
volume = {20},
number = {2},
pages = {297--310},
year = {2006},
url = {https://doi.org/10.1142/S0218001406004673},
doi = {10.1142/S0218001406004673},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijprai/ZhengCLLZ06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/FangYLLL06,
author = {Zhuo Fang and
Jiong Yang and
Yixue Li and
Qing{-}ming Luo and
Lei Liu},
title = {Knowledge guided analysis of microarray data},
journal = {J. Biomed. Informatics},
volume = {39},
number = {4},
pages = {401--411},
year = {2006},
url = {https://doi.org/10.1016/j.jbi.2005.08.004},
doi = {10.1016/J.JBI.2005.08.004},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/FangYLLL06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/LuHCHLLGL06,
author = {Qiang Lu and
Pei Hao and
Vasa Curcin and
Wei{-}Zhong He and
Yuan{-}Yuan Li and
Qing{-}ming Luo and
Yike Guo and
Yi{-}Xue Li},
title = {{KDE} Bioscience: Platform for bioinformatics analysis workflows},
journal = {J. Biomed. Informatics},
volume = {39},
number = {4},
pages = {440--450},
year = {2006},
url = {https://doi.org/10.1016/j.jbi.2005.09.001},
doi = {10.1016/J.JBI.2005.09.001},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/LuHCHLLGL06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/LiYGGTL06,
author = {Yuan{-}Yuan Li and
Hui Yu and
Zong{-}Ming Guo and
Ting{-}Qing Guo and
Kang Tu and
Yi{-}Xue Li},
title = {Systematic Analysis of Head-to-Head Gene Organization: Evolutionary
Conservation and Potential Biological Relevance},
journal = {PLoS Comput. Biol.},
volume = {2},
number = {7},
year = {2006},
url = {https://doi.org/10.1371/journal.pcbi.0020074},
doi = {10.1371/JOURNAL.PCBI.0020074},
timestamp = {Thu, 27 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/LiYGGTL06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/DingKLSPL06,
author = {Guohui Ding and
Jiuhong Kang and
Qi Liu and
Tieliu Shi and
Gang Pei and
Yixue Li},
title = {Insights into the Coupling of Duplication Events and Macroevolution
from an Age Profile of Animal Transmembrane Gene Families},
journal = {PLoS Comput. Biol.},
volume = {2},
number = {8},
year = {2006},
url = {https://doi.org/10.1371/journal.pcbi.0020102},
doi = {10.1371/JOURNAL.PCBI.0020102},
timestamp = {Wed, 25 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/DingKLSPL06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/LiYGGTL06a,
author = {Yuan{-}Yuan Li and
Hui Yu and
Zong{-}Ming Guo and
Ting{-}Qing Guo and
Kang Tu and
Yi{-}Xue Li},
title = {Correction: Systematic Analysis of Head-to-Head Gene Organization:
Evolutionary Conservation and Potential Biological Relevance},
journal = {PLoS Comput. Biol.},
volume = {2},
number = {8},
year = {2006},
url = {https://doi.org/10.1371/journal.pcbi.0020112},
doi = {10.1371/JOURNAL.PCBI.0020112},
timestamp = {Thu, 27 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/LiYGGTL06a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/apscc/LiXFD06,
author = {Yixue Li and
Yu Xu and
Gengzhong Feng and
Wenqiang Dai},
title = {On Loan-to-Value Ratios of Inventory Financing with Doubly Stochastic
Poisson Default Processes},
booktitle = {Proceedings of The 1st {IEEE} Asia-Pacific Services Computing Conference,
{APSCC} 2006, December 12-15, 2006, Guangzhou, China},
pages = {663--666},
publisher = {{IEEE} Computer Society},
year = {2006},
url = {https://doi.org/10.1109/APSCC.2006.73},
doi = {10.1109/APSCC.2006.73},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/apscc/LiXFD06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/vdmb/WangZCLL06,
author = {Zhuo Wang and
Xin{-}Guang Zhu and
Yazhu Chen and
Yi{-}Xue Li and
Lei Liu},
editor = {Mehmet M. Dalkilic and
Sun Kim and
Jiong Yang},
title = {Comparison of Modularization Methods in Application to Different Biological
Networks},
booktitle = {Data Mining and Bioinformatics, First International Workshop, {VDMB}
2006, Seoul, Korea, September 11, 2006, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {4316},
pages = {185--195},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11960669\_16},
doi = {10.1007/11960669\_16},
timestamp = {Tue, 14 May 2019 10:00:45 +0200},
biburl = {https://dblp.org/rec/conf/vdmb/WangZCLL06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HaoHHMXXWLWLZ05,
author = {Pei Hao and
Wei{-}Zhong He and
Yin Huang and
Liang{-}Xiao Ma and
Ying Xu and
Hong Xi and
Chuan Wang and
Boshu Liu and
Jin{-}Miao Wang and
Yi{-}Xue Li and
Yang Zhong},
title = {{MPSS:} an integrated database system for surveying a set of proteins},
journal = {Bioinform.},
volume = {21},
number = {9},
pages = {2142--2143},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti306},
doi = {10.1093/BIOINFORMATICS/BTI306},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HaoHHMXXWLWLZ05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SunXLLZSL05,
author = {Jingchun Sun and
Jinlin Xu and
Zhen Liu and
Qi Liu and
Aimin Zhao and
Tieliu Shi and
Yi{-}Xue Li},
title = {Refined phylogenetic profiles method for predicting protein-protein
interactions},
journal = {Bioinform.},
volume = {21},
number = {16},
pages = {3409--3415},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti532},
doi = {10.1093/BIOINFORMATICS/BTI532},
timestamp = {Tue, 24 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SunXLLZSL05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/prl/ZhangHZL05,
author = {Guang{-}Zheng Zhang and
De{-}Shuang Huang and
Yunping Zhu and
Yi{-}Xue Li},
title = {Improving protein secondary structure prediction by using the residue
conformational classes},
journal = {Pattern Recognit. Lett.},
volume = {26},
number = {15},
pages = {2346--2352},
year = {2005},
url = {https://doi.org/10.1016/j.patrec.2005.04.010},
doi = {10.1016/J.PATREC.2005.04.010},
timestamp = {Sat, 22 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/prl/ZhangHZL05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/candc/DengLL04,
author = {Yong Deng and
Qi Liu and
Yi{-}Xue Li},
title = {Scoring hidden Markov models to discriminate -barrel membrane proteins},
journal = {Comput. Biol. Chem.},
volume = {28},
number = {3},
pages = {189--194},
year = {2004},
url = {https://doi.org/10.1016/j.compbiolchem.2004.02.004},
doi = {10.1016/J.COMPBIOLCHEM.2004.02.004},
timestamp = {Tue, 24 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/candc/DengLL04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/candc/LiuZWL03,
author = {Qi Liu and
Yisheng Zhu and
Baohua Wang and
Yi{-}Xue Li},
title = {A HMM-based method to predict the transmembrane regions of {\textbackslash}beta-barrel
membrane proteins},
journal = {Comput. Biol. Chem.},
volume = {27},
number = {1},
pages = {69--76},
year = {2003},
url = {https://doi.org/10.1016/S0097-8485(02)00051-7},
doi = {10.1016/S0097-8485(02)00051-7},
timestamp = {Wed, 25 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/candc/LiuZWL03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/candc/LiuZWL03a,
author = {Qi Liu and
Yisheng Zhu and
Baohua Wang and
Yi{-}Xue Li},
title = {Identification of -barrel membrane proteins based on amino acid composition
properties and predicted secondary structure},
journal = {Comput. Biol. Chem.},
volume = {27},
number = {3},
pages = {355--361},
year = {2003},
url = {https://doi.org/10.1016/S1476-9271(02)00085-3},
doi = {10.1016/S1476-9271(02)00085-3},
timestamp = {Wed, 25 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/candc/LiuZWL03a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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