BibTeX records: Christian von Mering

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@article{DBLP:journals/nar/HernandezPlazaSBCGMKRLJBMH23,
  author       = {Ana Hern{\'{a}}ndez{-}Plaza and
                  Damian Szklarczyk and
                  Jorge Botas and
                  Carlos P. Cantalapiedra and
                  Joaqu{\'{\i}}n Giner{-}Lamia and
                  Daniel R. Mende and
                  Rebecca Kirsch and
                  Thomas Rattei and
                  Ivica Letunic and
                  Lars Juhl Jensen and
                  Peer Bork and
                  Christian von Mering and
                  Jaime Huerta{-}Cepas},
  title        = {eggNOG 6.0: enabling comparative genomics across 12 535 organisms},
  journal      = {Nucleic Acids Res.},
  volume       = {51},
  number       = {{D1}},
  pages        = {389--394},
  year         = {2023},
  url          = {https://doi.org/10.1093/nar/gkac1022},
  doi          = {10.1093/NAR/GKAC1022},
  timestamp    = {Sat, 19 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/HernandezPlazaSBCGMKRLJBMH23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SzklarczykKKNMHGFDPBJM23,
  author       = {Damian Szklarczyk and
                  Rebecca Kirsch and
                  Mikaela Koutrouli and
                  Katerina C. Nastou and
                  Farrokh Mehryary and
                  Radja Hachilif and
                  Annika L. Gable and
                  Tao Fang and
                  Nadezhda T. Doncheva and
                  Sampo Pyysalo and
                  Peer Bork and
                  Lars Juhl Jensen and
                  Christian von Mering},
  title        = {The {STRING} database in 2023: protein-protein association networks
                  and functional enrichment analyses for any sequenced genome of interest},
  journal      = {Nucleic Acids Res.},
  volume       = {51},
  number       = {{D1}},
  pages        = {638--646},
  year         = {2023},
  url          = {https://doi.org/10.1093/nar/gkac1000},
  doi          = {10.1093/NAR/GKAC1000},
  timestamp    = {Fri, 18 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/SzklarczykKKNMHGFDPBJM23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/FullamLSDKKKLMMMRSSSSZHMBM23,
  author       = {Anthony Fullam and
                  Ivica Letunic and
                  Thomas S. B. Schmidt and
                  Quinten R. Ducarmon and
                  Nicolai Karcher and
                  Supriya Khedkar and
                  Michael Kuhn and
                  Martin Larralde and
                  Oleksandr M. Maistrenko and
                  Lukas Malfertheiner and
                  Alessio Milanese and
                  Jo{\~{a}}o F. Matias Rodrigues and
                  Claudia Sanchis{-}L{\'{o}}pez and
                  Christian Schudoma and
                  Damian Szklarczyk and
                  Shinichi Sunagawa and
                  Georg Zeller and
                  Jaime Huerta{-}Cepas and
                  Christian von Mering and
                  Peer Bork and
                  Daniel R. Mende},
  title        = {proGenomes3: approaching one million accurately and consistently annotated
                  high-quality prokaryotic genomes},
  journal      = {Nucleic Acids Res.},
  volume       = {51},
  number       = {{D1}},
  pages        = {760--766},
  year         = {2023},
  url          = {https://doi.org/10.1093/nar/gkac1078},
  doi          = {10.1093/NAR/GKAC1078},
  timestamp    = {Fri, 18 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/FullamLSDKKKLMMMRSSSSZHMBM23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/GableSLRM22,
  author       = {Annika L. Gable and
                  Damian Szklarczyk and
                  David Lyon and
                  Jo{\~{a}}o F. Matias Rodrigues and
                  Christian von Mering},
  title        = {Systematic assessment of pathway databases, based on a diverse collection
                  of user-submitted experiments},
  journal      = {Briefings Bioinform.},
  volume       = {23},
  number       = {5},
  year         = {2022},
  url          = {https://doi.org/10.1093/bib/bbac355},
  doi          = {10.1093/BIB/BBAC355},
  timestamp    = {Tue, 18 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/GableSLRM22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SzklarczykGNLKP21,
  author       = {Damian Szklarczyk and
                  Annika L. Gable and
                  Katerina C. Nastou and
                  David Lyon and
                  Rebecca Kirsch and
                  Sampo Pyysalo and
                  Nadezhda T. Doncheva and
                  Marc Legeay and
                  Tao Fang and
                  Peer Bork and
                  Lars Juhl Jensen and
                  Christian von Mering},
  title        = {The {STRING} database in 2021: customizable protein-protein networks,
                  and functional characterization of user-uploaded gene/measurement
                  sets},
  journal      = {Nucleic Acids Res.},
  volume       = {49},
  number       = {Database-Issue},
  pages        = {D605--D612},
  year         = {2021},
  url          = {https://doi.org/10.1093/nar/gkaa1074},
  doi          = {10.1093/NAR/GKAA1074},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/SzklarczykGNLKP21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DrysdaleCPGBGGH20,
  author       = {Rachel Drysdale and
                  Charles E. Cook and
                  Robert Petryszak and
                  Vivienne Baillie Gerritsen and
                  Mary Barlow and
                  Elisabeth Gasteiger and
                  Franziska Gruhl and
                  J{\"{u}}rgen Haas and
                  Jerry Lanfear and
                  Rodrigo Lopez and
                  Nicole Redaschi and
                  Heinz Stockinger and
                  Daniel Teixeira and
                  Aravind Venkatesan and
                  Alex Bateman and
                  Alan J. Bridge and
                  Guy Cochrane and
                  Robert D. Finn and
                  Frank Oliver Gl{\"{o}}ckner and
                  Marc Hanauer and
                  Thomas M. Keane and
                  Andrew Leach and
                  Luana Licata and
                  Per Oksvold and
                  Sandra E. Orchard and
                  Christine A. Orengo and
                  Helen E. Parkinson and
                  Bengt Persson and
                  Pablo Porras and
                  Jordi Rambla and
                  Ana Rath and
                  Charlotte Rodwell and
                  Ugis Sarkans and
                  Dietmar Schomburg and
                  Ian Sillitoe and
                  J. Dylan Spalding and
                  Mathias Uhl{\'{e}}n and
                  Sameer Velankar and
                  Juan Antonio Vizca{\'{\i}}no and
                  Kalle von Feilitzen and
                  Christian von Mering and
                  Andrew D. Yates and
                  Niklas Blomberg and
                  Christine Durinx and
                  Johanna R. McEntyre},
  title        = {The {ELIXIR} Core Data Resources: fundamental infrastructure for the
                  life sciences},
  journal      = {Bioinform.},
  volume       = {36},
  number       = {8},
  pages        = {2636--2642},
  year         = {2020},
  url          = {https://doi.org/10.1093/bioinformatics/btz959},
  doi          = {10.1093/BIOINFORMATICS/BTZ959},
  timestamp    = {Fri, 15 Mar 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/DrysdaleCPGBGGH20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nature/RheinbayNAWSTHH20,
  author       = {Esther Rheinbay and
                  Morten Muhlig Nielsen and
                  Federico Abascal and
                  Jeremiah Wala and
                  Ofer Shapira and
                  Grace Tiao and
                  Henrik Hornsh{\o}j and
                  Julian M. Hess and
                  Randi Istrup Juul and
                  Ziao Lin and
                  Lars Feuerbach and
                  Radhakrishnan Sabarinathan and
                  Tobias Madsen and
                  Jaegil Kim and
                  Loris Mularoni and
                  Shimin Shuai and
                  Andr{\'{e}}s Lanz{\'{o}}s and
                  Carl Herrmann and
                  Yosef E. Maruvka and
                  Ciyue Shen and
                  Samirkumar B. Amin and
                  Pratiti Bandopadhayay and
                  Johanna Bertl and
                  Keith A. Boroevich and
                  John Busanovich and
                  Joana Carlevaro{-}Fita and
                  Dimple Chakravarty and
                  Calvin Wing Yiu Chan and
                  David Craft and
                  Priyanka Dhingra and
                  Klev Diamanti and
                  Nuno A. Fonseca and
                  Abel Gonzalez{-}Perez and
                  Qianyun Guo and
                  Mark P. Hamilton and
                  Nicholas J. Haradhvala and
                  Chen Hong and
                  Keren Isaev and
                  Todd A. Johnson and
                  Malene Juul and
                  Andr{\'{e}} Kahles and
                  Abdullah Kahraman and
                  Youngwook Kim and
                  Jan Komorowski and
                  Kiran Kumar and
                  Sushant Kumar and
                  Donghoon Lee and
                  Kjong{-}Van Lehmann and
                  Yilong Li and
                  Eric Minwei Liu and
                  Lucas Lochovsky and
                  Keunchil Park and
                  Oriol Pich and
                  Nicola D. Roberts and
                  Gordon Saksena and
                  Steven E. Schumacher and
                  Nikos Sidiropoulos and
                  Lina Sieverling and
                  Nasa Sinnott{-}Armstrong and
                  Chip Stewart and
                  David Tamborero and
                  Jose M. C. Tubio and
                  Husen M. Umer and
                  Liis Uusk{\"{u}}la{-}Reimand and
                  Claes Wadelius and
                  Lina Wadi and
                  Xiaotong Yao and
                  Cheng{-}Zhong Zhang and
                  Jing Zhang and
                  James E. Haber and
                  Asger Hobolth and
                  Marcin Imielinski and
                  Manolis Kellis and
                  Michael S. Lawrence and
                  Christian von Mering and
                  Hidewaki Nakagawa and
                  Benjamin J. Raphael and
                  Mark A. Rubin and
                  Chris Sander and
                  Lincoln D. Stein and
                  Joshua M. Stuart and
                  Tatsuhiko Tsunoda and
                  David A. Wheeler and
                  Rory Johnson and
                  J{\"{u}}ri Reimand and
                  Mark Gerstein and
                  Ekta Khurana and
                  Peter J. Campbell and
                  N{\'{u}}ria L{\'{o}}pez{-}Bigas and
                  Gary D. Bader and
                  Jonathan Barenboim and
                  Rameen Beroukhim and
                  S{\o}ren Brunak and
                  Ken Chen and
                  Jung Kyoon Choi and
                  Jordi Deu{-}Pons and
                  J. Lynn Fink and
                  Joan Frigola and
                  Carlo Gambacorti Passerini and
                  Dale W. Garsed and
                  Gad Getz and
                  Ivo Glynne Gut and
                  David Haan and
                  Arif Ozgun Harmanci and
                  Mohamed Helmy and
                  Ermin Hodzic and
                  Jos{\'{e}} M. G. Izarzugaza and
                  Jong K. Kim and
                  Jan O. Korbel and
                  Erik Larsson and
                  Shantao Li and
                  Xiaotong Li and
                  Shaoke Lou and
                  Kathleen Marchal and
                  I{\~{n}}igo Martincorena and
                  Alexander Mart{\'{\i}}nez{-}Fundichely and
                  Patrick D. McGillivray and
                  William Meyerson and
                  Ferran Mui{\~{n}}os and
                  Marta Paczkowska and
                  Kiejung Park and
                  Jakob Skou Pedersen and
                  Tirso Pons and
                  Sergio Pulido{-}Tamayo and
                  Iker Reyes{-}Salazar and
                  Matthew A. Reyna and
                  Carlota Rubio{-}Perez and
                  S{\"{u}}leyman Cenk Sahinalp and
                  Leonidas Salichos and
                  Mark Shackleton and
                  Raunak Shrestha and
                  Alfonso Valencia and
                  Miguel Vazquez and
                  Lieven P. C. Verbeke and
                  Jiayin Wang and
                  Jonathan Warrell and
                  Sebastian M. Waszak and
                  Joachim Weischenfeldt and
                  Guanming Wu and
                  Jun Yu and
                  Xuanping Zhang and
                  Yan Zhang and
                  Zhongming Zhao and
                  Lihua Zou and
                  Kadir C. Akdemir and
                  Eva G. Alvarez and
                  Adrian Baez{-}Ortega and
                  Paul C. Boutros and
                  David D. L. Bowtell and
                  Benedikt Brors and
                  Kathleen H. Burns and
                  Kin Chan and
                  Isidro Cort{\'{e}}s{-}Ciriano and
                  Ana Dueso{-}Barroso and
                  Andrew J. Dunford and
                  Paul A. Edwards and
                  Xavier Estivill and
                  Dariush Etemadmoghadam and
                  Milana Frenkel{-}Morgenstern and
                  Dmitry A. Gordenin and
                  Barbara Hutter and
                  David T. W. Jones and
                  Young Seok Ju and
                  Marat D. Kazanov and
                  Leszek J. Klimczak and
                  Youngil Koh and
                  Eunjung Alice Lee and
                  Jake June{-}Koo Lee and
                  Andy G. Lynch and
                  Geoff MacIntyre and
                  Florian Markowetz and
                  Matthew Meyerson and
                  Satoru Miyano and
                  Fabio C. P. Navarro and
                  Stephan Ossowski and
                  Peter J. Park and
                  John V. Pearson and
                  Montserrat Puiggr{\`{o}}s and
                  Karsten Rippe and
                  Steven A. Roberts and
                  Bernardo Rodriguez{-}Martin and
                  Ralph Scully and
                  David Torrents and
                  Izar Villasante and
                  Nicola Waddell and
                  Jeremiah A. Wala and
                  Lixing Yang and
                  Sung{-}Soo Yoon and
                  Jorge Zamora},
  title        = {Analyses of non-coding somatic drivers in 2,658 cancer whole genomes},
  journal      = {Nat.},
  volume       = {578},
  number       = {7793},
  pages        = {102--111},
  year         = {2020},
  url          = {https://doi.org/10.1038/s41586-020-1965-x},
  doi          = {10.1038/S41586-020-1965-X},
  timestamp    = {Thu, 11 May 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nature/RheinbayNAWSTHH20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HellerSM19,
  author       = {Davide Heller and
                  Damian Szklarczyk and
                  Christian von Mering},
  title        = {Tree reconciliation combined with subsampling improves large scale
                  inference of orthologous group hierarchies},
  journal      = {{BMC} Bioinform.},
  volume       = {20},
  number       = {1},
  pages        = {228:1--228:12},
  year         = {2019},
  url          = {https://doi.org/10.1186/s12859-019-2828-z},
  doi          = {10.1186/S12859-019-2828-Z},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/HellerSM19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Huerta-CepasSHH19,
  author       = {Jaime Huerta{-}Cepas and
                  Damian Szklarczyk and
                  Davide Heller and
                  Ana Hern{\'{a}}ndez{-}Plaza and
                  Sofia K. Forslund and
                  Helen Cook and
                  Daniel R. Mende and
                  Ivica Letunic and
                  Thomas Rattei and
                  Lars Juhl Jensen and
                  Christian von Mering and
                  Peer Bork},
  title        = {eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated
                  orthology resource based on 5090 organisms and 2502 viruses},
  journal      = {Nucleic Acids Res.},
  volume       = {47},
  number       = {Database-Issue},
  pages        = {D309--D314},
  year         = {2019},
  url          = {https://doi.org/10.1093/nar/gky1085},
  doi          = {10.1093/NAR/GKY1085},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/nar/Huerta-CepasSHH19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SzklarczykGLJWH19,
  author       = {Damian Szklarczyk and
                  Annika L. Gable and
                  David Lyon and
                  Alexander Junge and
                  Stefan Wyder and
                  Jaime Huerta{-}Cepas and
                  Milan Simonovic and
                  Nadezhda T. Doncheva and
                  John H. Morris and
                  Peer Bork and
                  Lars Juhl Jensen and
                  Christian von Mering},
  title        = {{STRING} v11: protein-protein association networks with increased
                  coverage, supporting functional discovery in genome-wide experimental
                  datasets},
  journal      = {Nucleic Acids Res.},
  volume       = {47},
  number       = {Database-Issue},
  pages        = {D607--D613},
  year         = {2019},
  url          = {https://doi.org/10.1093/nar/gky1131},
  doi          = {10.1093/NAR/GKY1131},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/nar/SzklarczykGLJWH19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/JungeRGPS17,
  author       = {Alexander Junge and
                  Jan C. Refsgaard and
                  Christian Garde and
                  Xiaoyong Pan and
                  Alberto Santos and
                  Ferhat Alkan and
                  Christian Anthon and
                  Christian von Mering and
                  Christopher T. Workman and
                  Lars Juhl Jensen and
                  Jan Gorodkin},
  title        = {{RAIN:} RNA-protein Association and Interaction Networks},
  journal      = {Database J. Biol. Databases Curation},
  volume       = {2017},
  pages        = {baw167},
  year         = {2017},
  url          = {https://doi.org/10.1093/database/baw167},
  doi          = {10.1093/DATABASE/BAW167},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biodb/JungeRGPS17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RodriguesSTM17,
  author       = {Jo{\~{a}}o F. Matias Rodrigues and
                  Thomas S. B. Schmidt and
                  Janko Tackmann and
                  Christian von Mering},
  title        = {MAPseq: highly efficient k-mer search with confidence estimates, for
                  rRNA sequence analysis},
  journal      = {Bioinform.},
  volume       = {33},
  number       = {23},
  pages        = {3808--3810},
  year         = {2017},
  url          = {https://doi.org/10.1093/bioinformatics/btx517},
  doi          = {10.1093/BIOINFORMATICS/BTX517},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/RodriguesSTM17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SzklarczykMC0WS17,
  author       = {Damian Szklarczyk and
                  John H. Morris and
                  Helen Cook and
                  Michael Kuhn and
                  Stefan Wyder and
                  Milan Simonovic and
                  Alberto Santos and
                  Nadezhda T. Doncheva and
                  Alexander Roth and
                  Peer Bork and
                  Lars Juhl Jensen and
                  Christian von Mering},
  title        = {The {STRING} database in 2017: quality-controlled protein-protein
                  association networks, made broadly accessible},
  journal      = {Nucleic Acids Res.},
  volume       = {45},
  number       = {Database-Issue},
  pages        = {D362--D368},
  year         = {2017},
  url          = {https://doi.org/10.1093/nar/gkw937},
  doi          = {10.1093/NAR/GKW937},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/SzklarczykMC0WS17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FranceschiniLMJ16,
  author       = {Andrea Franceschini and
                  Jianyi Lin and
                  Christian von Mering and
                  Lars Juhl Jensen},
  title        = {SVD-phy: improved prediction of protein functional associations through
                  singular value decomposition of phylogenetic profiles},
  journal      = {Bioinform.},
  volume       = {32},
  number       = {7},
  pages        = {1085--1087},
  year         = {2016},
  url          = {https://doi.org/10.1093/bioinformatics/btv696},
  doi          = {10.1093/BIOINFORMATICS/BTV696},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/FranceschiniLMJ16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Huerta-CepasSFC16,
  author       = {Jaime Huerta{-}Cepas and
                  Damian Szklarczyk and
                  Kristoffer Forslund and
                  Helen Cook and
                  Davide Heller and
                  Mathias C. Walter and
                  Thomas Rattei and
                  Daniel R. Mende and
                  Shinichi Sunagawa and
                  Michael Kuhn and
                  Lars Juhl Jensen and
                  Christian von Mering and
                  Peer Bork},
  title        = {eggNOG 4.5: a hierarchical orthology framework with improved functional
                  annotations for eukaryotic, prokaryotic and viral sequences},
  journal      = {Nucleic Acids Res.},
  volume       = {44},
  number       = {Database-Issue},
  pages        = {286--293},
  year         = {2016},
  url          = {https://doi.org/10.1093/nar/gkv1248},
  doi          = {10.1093/NAR/GKV1248},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/nar/Huerta-CepasSFC16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SzklarczykSMJBK16,
  author       = {Damian Szklarczyk and
                  Alberto Santos and
                  Christian von Mering and
                  Lars Juhl Jensen and
                  Peer Bork and
                  Michael Kuhn},
  title        = {{STITCH} 5: augmenting protein-chemical interaction networks with
                  tissue and affinity data},
  journal      = {Nucleic Acids Res.},
  volume       = {44},
  number       = {Database-Issue},
  pages        = {380--384},
  year         = {2016},
  url          = {https://doi.org/10.1093/nar/gkv1277},
  doi          = {10.1093/NAR/GKV1277},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/SzklarczykSMJBK16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SzklarczykFWFHHS0STKBJM15,
  author       = {Damian Szklarczyk and
                  Andrea Franceschini and
                  Stefan Wyder and
                  Kristoffer Forslund and
                  Davide Heller and
                  Jaime Huerta{-}Cepas and
                  Milan Simonovic and
                  Alexander Roth and
                  Alberto Santos and
                  Kalliopi Tsafou and
                  Michael Kuhn and
                  Peer Bork and
                  Lars Juhl Jensen and
                  Christian von Mering},
  title        = {{STRING} v10: protein-protein interaction networks, integrated over
                  the tree of life},
  journal      = {Nucleic Acids Res.},
  volume       = {43},
  number       = {Database-Issue},
  pages        = {447--452},
  year         = {2015},
  url          = {https://doi.org/10.1093/nar/gku1003},
  doi          = {10.1093/NAR/GKU1003},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/SzklarczykFWFHHS0STKBJM15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RodriguesM14,
  author       = {Jo{\~{a}}o F. Matias Rodrigues and
                  Christian von Mering},
  title        = {{HPC-CLUST:} distributed hierarchical clustering for large sets of
                  nucleotide sequences},
  journal      = {Bioinform.},
  volume       = {30},
  number       = {2},
  pages        = {287--288},
  year         = {2014},
  url          = {https://doi.org/10.1093/bioinformatics/btt657},
  doi          = {10.1093/BIOINFORMATICS/BTT657},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/RodriguesM14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PowellFST0HGRCKJMB14,
  author       = {Sean Powell and
                  Kristoffer Forslund and
                  Damian Szklarczyk and
                  Kalliopi Trachana and
                  Alexander Roth and
                  Jaime Huerta{-}Cepas and
                  Toni Gabald{\'{o}}n and
                  Thomas Rattei and
                  Christopher J. Creevey and
                  Michael Kuhn and
                  Lars Juhl Jensen and
                  Christian von Mering and
                  Peer Bork},
  title        = {eggNOG v4.0: nested orthology inference across 3686 organisms},
  journal      = {Nucleic Acids Res.},
  volume       = {42},
  number       = {Database-Issue},
  pages        = {231--239},
  year         = {2014},
  url          = {https://doi.org/10.1093/nar/gkt1253},
  doi          = {10.1093/NAR/GKT1253},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/nar/PowellFST0HGRCKJMB14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KuhnSPBMJB14,
  author       = {Michael Kuhn and
                  Damian Szklarczyk and
                  Sune Pletscher{-}Frankild and
                  Thomas H. Blicher and
                  Christian von Mering and
                  Lars Juhl Jensen and
                  Peer Bork},
  title        = {{STITCH} 4: integration of protein-chemical interactions with user
                  data},
  journal      = {Nucleic Acids Res.},
  volume       = {42},
  number       = {Database-Issue},
  pages        = {401--407},
  year         = {2014},
  url          = {https://doi.org/10.1093/nar/gkt1207},
  doi          = {10.1093/NAR/GKT1207},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/KuhnSPBMJB14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/StockingerAABBBBBDLMLMPRSMNWXZZZA14,
  author       = {Heinz Stockinger and
                  Adrian M. Altenhoff and
                  Konstantin Arnold and
                  Amos Bairoch and
                  Frederic B. Bastian and
                  Sven Bergmann and
                  Lydie Bougueleret and
                  Philipp Bucher and
                  Mauro Delorenzi and
                  Lydie Lane and
                  Philippe Le Mercier and
                  Fr{\'{e}}d{\'{e}}rique Lisacek and
                  Olivier Michielin and
                  Patricia M. Palagi and
                  Jacques Rougemont and
                  Torsten Schwede and
                  Christian von Mering and
                  Erik van Nimwegen and
                  Daniel Walther and
                  Ioannis Xenarios and
                  Mihaela Zavolan and
                  Evgeny M. Zdobnov and
                  Vincent Zoete and
                  Ron D. Appel},
  title        = {Fifteen years {SIB} Swiss Institute of Bioinformatics: life science
                  databases, tools and support},
  journal      = {Nucleic Acids Res.},
  volume       = {42},
  number       = {Webserver-Issue},
  pages        = {436--441},
  year         = {2014},
  url          = {https://doi.org/10.1093/nar/gku380},
  doi          = {10.1093/NAR/GKU380},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/StockingerAABBBBBDLMLMPRSMNWXZZZA14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/SchmidtRM14,
  author       = {Thomas S. B. Schmidt and
                  Jo{\~{a}}o F. Matias Rodrigues and
                  Christian von Mering},
  title        = {Ecological Consistency of {SSU} rRNA-Based Operational Taxonomic Units
                  at a Global Scale},
  journal      = {PLoS Comput. Biol.},
  volume       = {10},
  number       = {4},
  year         = {2014},
  url          = {https://doi.org/10.1371/journal.pcbi.1003594},
  doi          = {10.1371/JOURNAL.PCBI.1003594},
  timestamp    = {Thu, 10 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/SchmidtRM14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/FranceschiniSFKSRLMBMJ13,
  author       = {Andrea Franceschini and
                  Damian Szklarczyk and
                  Sune Frankild and
                  Michael Kuhn and
                  Milan Simonovic and
                  Alexander Roth and
                  Jianyi Lin and
                  Pablo Minguez and
                  Peer Bork and
                  Christian von Mering and
                  Lars Juhl Jensen},
  title        = {{STRING} v9.1: protein-protein interaction networks, with increased
                  coverage and integration},
  journal      = {Nucleic Acids Res.},
  volume       = {41},
  number       = {Database-Issue},
  pages        = {808--815},
  year         = {2013},
  url          = {https://doi.org/10.1093/nar/gks1094},
  doi          = {10.1093/NAR/GKS1094},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/FranceschiniSFKSRLMBMJ13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iwbbio/CaiKBMRB13,
  author       = {Haoyang Cai and
                  Nitin Kumar and
                  Homayoun C. Bagheri and
                  Christian von Mering and
                  Mark D. Robinson and
                  Michael Baudis},
  editor       = {Ignacio Rojas and
                  Francisco M. Ortu{\~{n}}o Guzman},
  title        = {Chromothripsis-like patterns are recurring, but heterogeneously distributed
                  features in cancer: {A} survey of 22, 347 genomic copy number profiles},
  booktitle    = {International Work-Conference on Bioinformatics and Biomedical Engineering,
                  {IWBBIO} 2013, Granada, Spain, March 18-20, 2013. Proceedings},
  pages        = {49},
  publisher    = {Copicentro Editorial},
  year         = {2013},
  url          = {http://iwbbio.ugr.es/papers/iwbbio\_007.pdf},
  timestamp    = {Thu, 12 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/iwbbio/CaiKBMRB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PowellSTRKMARLDJMB12,
  author       = {Sean Powell and
                  Damian Szklarczyk and
                  Kalliopi Trachana and
                  Alexander Roth and
                  Michael Kuhn and
                  Jean Muller and
                  Roland Arnold and
                  Thomas Rattei and
                  Ivica Letunic and
                  Tobias Doerks and
                  Lars Juhl Jensen and
                  Christian von Mering and
                  Peer Bork},
  title        = {eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different
                  taxonomic ranges},
  journal      = {Nucleic Acids Res.},
  volume       = {40},
  number       = {Database-Issue},
  pages        = {284--289},
  year         = {2012},
  url          = {https://doi.org/10.1093/nar/gkr1060},
  doi          = {10.1093/NAR/GKR1060},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/PowellSTRKMARLDJMB12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KuhnSFMJB12,
  author       = {Michael Kuhn and
                  Damian Szklarczyk and
                  Andrea Franceschini and
                  Christian von Mering and
                  Lars Juhl Jensen and
                  Peer Bork},
  title        = {{STITCH} 3: zooming in on protein-chemical interactions},
  journal      = {Nucleic Acids Res.},
  volume       = {40},
  number       = {Database-Issue},
  pages        = {876--880},
  year         = {2012},
  url          = {https://doi.org/10.1093/nar/gkr1011},
  doi          = {10.1093/NAR/GKR1011},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/KuhnSFMJB12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SzklarczykFKSRMDSMBJM11,
  author       = {Damian Szklarczyk and
                  Andrea Franceschini and
                  Michael Kuhn and
                  Milan Simonovic and
                  Alexander Roth and
                  Pablo Minguez and
                  Tobias Doerks and
                  Manuel Stark and
                  Jean Muller and
                  Peer Bork and
                  Lars Juhl Jensen and
                  Christian von Mering},
  title        = {The {STRING} database in 2011: functional interaction networks of
                  proteins, globally integrated and scored},
  journal      = {Nucleic Acids Res.},
  volume       = {39},
  number       = {Database-Issue},
  pages        = {561--568},
  year         = {2011},
  url          = {https://doi.org/10.1093/nar/gkq973},
  doi          = {10.1093/NAR/GKQ973},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/SzklarczykFKSRMDSMBJM11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/SchillingWACBM11,
  author       = {Sabine Schilling and
                  Maria Willecke and
                  Tinri Aegerter{-}Wilmsen and
                  Olaf A. Cirpka and
                  Konrad Basler and
                  Christian von Mering},
  title        = {Cell-Sorting at the {A/P} Boundary in the \emph{Drosophila} Wing Primordium:
                  {A} Computational Model to Consolidate Observed Non-Local Effects
                  of Hh Signaling},
  journal      = {PLoS Comput. Biol.},
  volume       = {7},
  number       = {4},
  year         = {2011},
  url          = {https://doi.org/10.1371/journal.pcbi.1002025},
  doi          = {10.1371/JOURNAL.PCBI.1002025},
  timestamp    = {Thu, 10 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/SchillingWACBM11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MullerSJLRKPMDJB10,
  author       = {Jean Muller and
                  Damian Szklarczyk and
                  Philippe Julien and
                  Ivica Letunic and
                  Alexander Roth and
                  Michael Kuhn and
                  Sean Powell and
                  Christian von Mering and
                  Tobias Doerks and
                  Lars Juhl Jensen and
                  Peer Bork},
  title        = {eggNOG v2.0: extending the evolutionary genealogy of genes with enhanced
                  non-supervised orthologous groups, species and functional annotations},
  journal      = {Nucleic Acids Res.},
  volume       = {38},
  number       = {Database-Issue},
  pages        = {190--195},
  year         = {2010},
  url          = {https://doi.org/10.1093/nar/gkp951},
  doi          = {10.1093/NAR/GKP951},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/MullerSJLRKPMDJB10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KuhnSFCMJBB10,
  author       = {Michael Kuhn and
                  Damian Szklarczyk and
                  Andrea Franceschini and
                  Monica Campillos and
                  Christian von Mering and
                  Lars Juhl Jensen and
                  Andreas Beyer and
                  Peer Bork},
  title        = {{STITCH} 2: an interaction network database for small molecules and
                  proteins},
  journal      = {Nucleic Acids Res.},
  volume       = {38},
  number       = {Database-Issue},
  pages        = {552--556},
  year         = {2010},
  url          = {https://doi.org/10.1093/nar/gkp937},
  doi          = {10.1093/NAR/GKP937},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/KuhnSFCMJBB10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/JensenKSCCMDJRSBM09,
  author       = {Lars Juhl Jensen and
                  Michael Kuhn and
                  Manuel Stark and
                  Samuel Chaffron and
                  Christopher J. Creevey and
                  Jean Muller and
                  Tobias Doerks and
                  Philippe Julien and
                  Alexander Roth and
                  Milan Simonovic and
                  Peer Bork and
                  Christian von Mering},
  title        = {{STRING} 8 - a global view on proteins and their functional interactions
                  in 630 organisms},
  journal      = {Nucleic Acids Res.},
  volume       = {37},
  number       = {Database-Issue},
  pages        = {412--416},
  year         = {2009},
  url          = {https://doi.org/10.1093/nar/gkn760},
  doi          = {10.1093/NAR/GKN760},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/JensenKSCCMDJRSBM09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/JensenJKMMDB08,
  author       = {Lars Juhl Jensen and
                  Philippe Julien and
                  Michael Kuhn and
                  Christian von Mering and
                  Jean Muller and
                  Tobias Doerks and
                  Peer Bork},
  title        = {eggNOG: automated construction and annotation of orthologous groups
                  of genes},
  journal      = {Nucleic Acids Res.},
  volume       = {36},
  number       = {Database-Issue},
  pages        = {250--254},
  year         = {2008},
  url          = {https://doi.org/10.1093/nar/gkm796},
  doi          = {10.1093/NAR/GKM796},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/JensenJKMMDB08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KuhnMCJB08,
  author       = {Michael Kuhn and
                  Christian von Mering and
                  Monica Campillos and
                  Lars Juhl Jensen and
                  Peer Bork},
  title        = {{STITCH:} interaction networks of chemicals and proteins},
  journal      = {Nucleic Acids Res.},
  volume       = {36},
  number       = {Database-Issue},
  pages        = {684--688},
  year         = {2008},
  url          = {https://doi.org/10.1093/nar/gkm795},
  doi          = {10.1093/NAR/GKM795},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/KuhnMCJB08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MeringJKCDKSB07,
  author       = {Christian von Mering and
                  Lars Juhl Jensen and
                  Michael Kuhn and
                  Samuel Chaffron and
                  Tobias Doerks and
                  Beate Kr{\"{u}}ger and
                  Berend Snel and
                  Peer Bork},
  title        = {{STRING} 7 - recent developments in the integration and prediction
                  of protein interactions},
  journal      = {Nucleic Acids Res.},
  volume       = {35},
  number       = {Database-Issue},
  pages        = {358--362},
  year         = {2007},
  url          = {https://doi.org/10.1093/nar/gkl825},
  doi          = {10.1093/NAR/GKL825},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/MeringJKCDKSB07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MeringJSHKFJHB05,
  author       = {Christian von Mering and
                  Lars Juhl Jensen and
                  Berend Snel and
                  Sean D. Hooper and
                  Markus Krupp and
                  Mathilde Foglierini and
                  Nelly Jouffre and
                  Martijn A. Huynen and
                  Peer Bork},
  title        = {{STRING:} known and predicted protein-protein associations, integrated
                  and transferred across organisms},
  journal      = {Nucleic Acids Res.},
  volume       = {33},
  number       = {Database-Issue},
  pages        = {433--437},
  year         = {2005},
  url          = {https://doi.org/10.1093/nar/gki005},
  doi          = {10.1093/NAR/GKI005},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/MeringJSHKFJHB05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CrassAB04,
  author       = {Torsten Crass and
                  Iris Antes and
                  Rico Basekow and
                  Peer Bork and
                  Christian Buning and
                  Maik Christensen and
                  Holger Claussen and
                  Christian Ebeling and
                  Peter Ernst and
                  Val{\'{e}}rie Gailus{-}Durner and
                  Karl{-}Heinz Glatting and
                  Rolf Gohla and
                  Frank G{\"{o}}{\ss}ling and
                  Korbinian Grote and
                  Karsten R. Heidtke and
                  Alexander Herrmann and
                  Sean O'Keeffe and
                  O. Kie{\ss}lich and
                  Sven Kolibal and
                  Jan O. Korbel and
                  Thomas Lengauer and
                  Ines Liebich and
                  Mark van der Linden and
                  Hannes Luz and
                  Kathrin Meissner and
                  Christian von Mering and
                  Heinz{-}Theodor Mevissen and
                  Hans{-}Werner Mewes and
                  Holger Michael and
                  Martin Mokrejs and
                  Tobias M{\"{u}}ller and
                  Heike Pospisil and
                  Matthias Rarey and
                  Jens G. Reich and
                  Ralf Schneider and
                  Dietmar Schomburg and
                  Steffen Schulze{-}Kremer and
                  Knut Schwarzer and
                  Ingolf Sommer and
                  Stephan Springstubbe and
                  S{\'{a}}ndor Suhai and
                  Gnanasekaran Thoppae and
                  Martin Vingron and
                  Jens Warfsmann and
                  Thomas Werner and
                  Daniel Wetzler and
                  Edgar Wingender and
                  Ralf Zimmer},
  title        = {The Helmholtz Network for Bioinformatics: an integrative web portal
                  for bioinformatics resources},
  journal      = {Bioinform.},
  volume       = {20},
  number       = {2},
  pages        = {268--270},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/btg398},
  doi          = {10.1093/BIOINFORMATICS/BTG398},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/CrassAB04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/JensenLMB04,
  author       = {Lars Juhl Jensen and
                  Julien Lagarde and
                  Christian von Mering and
                  Peer Bork},
  title        = {ArrayProspector: a web resource of functional associations inferred
                  from microarray expression data},
  journal      = {Nucleic Acids Res.},
  volume       = {32},
  number       = {Web-Server-Issue},
  pages        = {445--448},
  year         = {2004},
  url          = {https://doi.org/10.1093/nar/gkh407},
  doi          = {10.1093/NAR/GKH407},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/JensenLMB04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KrauseMB03,
  author       = {Roland Krause and
                  Christian von Mering and
                  Peer Bork},
  title        = {A comprehensive set of protein complexes in yeast: mining large scale
                  protein-protein interaction screens},
  journal      = {Bioinform.},
  volume       = {19},
  number       = {15},
  pages        = {1901--1908},
  year         = {2003},
  url          = {https://doi.org/10.1093/bioinformatics/btg344},
  doi          = {10.1093/BIOINFORMATICS/BTG344},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/KrauseMB03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MeringHJSBS03,
  author       = {Christian von Mering and
                  Martijn A. Huynen and
                  Daniel Jaeggi and
                  Steffen Schmidt and
                  Peer Bork and
                  Berend Snel},
  title        = {{STRING:} a database of predicted functional associations between
                  proteins},
  journal      = {Nucleic Acids Res.},
  volume       = {31},
  number       = {1},
  pages        = {258--261},
  year         = {2003},
  url          = {https://doi.org/10.1093/nar/gkg034},
  doi          = {10.1093/NAR/GKG034},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/nar/MeringHJSBS03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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