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BibTeX records: Christian von Mering
@article{DBLP:journals/nar/HernandezPlazaSBCGMKRLJBMH23, author = {Ana Hern{\'{a}}ndez{-}Plaza and Damian Szklarczyk and Jorge Botas and Carlos P. Cantalapiedra and Joaqu{\'{\i}}n Giner{-}Lamia and Daniel R. Mende and Rebecca Kirsch and Thomas Rattei and Ivica Letunic and Lars Juhl Jensen and Peer Bork and Christian von Mering and Jaime Huerta{-}Cepas}, title = {eggNOG 6.0: enabling comparative genomics across 12 535 organisms}, journal = {Nucleic Acids Res.}, volume = {51}, number = {{D1}}, pages = {389--394}, year = {2023}, url = {https://doi.org/10.1093/nar/gkac1022}, doi = {10.1093/NAR/GKAC1022}, timestamp = {Sat, 19 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/HernandezPlazaSBCGMKRLJBMH23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/SzklarczykKKNMHGFDPBJM23, author = {Damian Szklarczyk and Rebecca Kirsch and Mikaela Koutrouli and Katerina C. Nastou and Farrokh Mehryary and Radja Hachilif and Annika L. Gable and Tao Fang and Nadezhda T. Doncheva and Sampo Pyysalo and Peer Bork and Lars Juhl Jensen and Christian von Mering}, title = {The {STRING} database in 2023: protein-protein association networks and functional enrichment analyses for any sequenced genome of interest}, journal = {Nucleic Acids Res.}, volume = {51}, number = {{D1}}, pages = {638--646}, year = {2023}, url = {https://doi.org/10.1093/nar/gkac1000}, doi = {10.1093/NAR/GKAC1000}, timestamp = {Fri, 18 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/SzklarczykKKNMHGFDPBJM23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/FullamLSDKKKLMMMRSSSSZHMBM23, author = {Anthony Fullam and Ivica Letunic and Thomas S. B. Schmidt and Quinten R. Ducarmon and Nicolai Karcher and Supriya Khedkar and Michael Kuhn and Martin Larralde and Oleksandr M. Maistrenko and Lukas Malfertheiner and Alessio Milanese and Jo{\~{a}}o F. Matias Rodrigues and Claudia Sanchis{-}L{\'{o}}pez and Christian Schudoma and Damian Szklarczyk and Shinichi Sunagawa and Georg Zeller and Jaime Huerta{-}Cepas and Christian von Mering and Peer Bork and Daniel R. Mende}, title = {proGenomes3: approaching one million accurately and consistently annotated high-quality prokaryotic genomes}, journal = {Nucleic Acids Res.}, volume = {51}, number = {{D1}}, pages = {760--766}, year = {2023}, url = {https://doi.org/10.1093/nar/gkac1078}, doi = {10.1093/NAR/GKAC1078}, timestamp = {Fri, 18 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/FullamLSDKKKLMMMRSSSSZHMBM23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/GableSLRM22, author = {Annika L. Gable and Damian Szklarczyk and David Lyon and Jo{\~{a}}o F. Matias Rodrigues and Christian von Mering}, title = {Systematic assessment of pathway databases, based on a diverse collection of user-submitted experiments}, journal = {Briefings Bioinform.}, volume = {23}, number = {5}, year = {2022}, url = {https://doi.org/10.1093/bib/bbac355}, doi = {10.1093/BIB/BBAC355}, timestamp = {Tue, 18 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/GableSLRM22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/SzklarczykGNLKP21, author = {Damian Szklarczyk and Annika L. Gable and Katerina C. Nastou and David Lyon and Rebecca Kirsch and Sampo Pyysalo and Nadezhda T. Doncheva and Marc Legeay and Tao Fang and Peer Bork and Lars Juhl Jensen and Christian von Mering}, title = {The {STRING} database in 2021: customizable protein-protein networks, and functional characterization of user-uploaded gene/measurement sets}, journal = {Nucleic Acids Res.}, volume = {49}, number = {Database-Issue}, pages = {D605--D612}, year = {2021}, url = {https://doi.org/10.1093/nar/gkaa1074}, doi = {10.1093/NAR/GKAA1074}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/SzklarczykGNLKP21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/DrysdaleCPGBGGH20, author = {Rachel Drysdale and Charles E. Cook and Robert Petryszak and Vivienne Baillie Gerritsen and Mary Barlow and Elisabeth Gasteiger and Franziska Gruhl and J{\"{u}}rgen Haas and Jerry Lanfear and Rodrigo Lopez and Nicole Redaschi and Heinz Stockinger and Daniel Teixeira and Aravind Venkatesan and Alex Bateman and Alan J. Bridge and Guy Cochrane and Robert D. Finn and Frank Oliver Gl{\"{o}}ckner and Marc Hanauer and Thomas M. Keane and Andrew Leach and Luana Licata and Per Oksvold and Sandra E. Orchard and Christine A. Orengo and Helen E. Parkinson and Bengt Persson and Pablo Porras and Jordi Rambla and Ana Rath and Charlotte Rodwell and Ugis Sarkans and Dietmar Schomburg and Ian Sillitoe and J. Dylan Spalding and Mathias Uhl{\'{e}}n and Sameer Velankar and Juan Antonio Vizca{\'{\i}}no and Kalle von Feilitzen and Christian von Mering and Andrew D. Yates and Niklas Blomberg and Christine Durinx and Johanna R. McEntyre}, title = {The {ELIXIR} Core Data Resources: fundamental infrastructure for the life sciences}, journal = {Bioinform.}, volume = {36}, number = {8}, pages = {2636--2642}, year = {2020}, url = {https://doi.org/10.1093/bioinformatics/btz959}, doi = {10.1093/BIOINFORMATICS/BTZ959}, timestamp = {Fri, 15 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/DrysdaleCPGBGGH20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nature/RheinbayNAWSTHH20, author = {Esther Rheinbay and Morten Muhlig Nielsen and Federico Abascal and Jeremiah Wala and Ofer Shapira and Grace Tiao and Henrik Hornsh{\o}j and Julian M. Hess and Randi Istrup Juul and Ziao Lin and Lars Feuerbach and Radhakrishnan Sabarinathan and Tobias Madsen and Jaegil Kim and Loris Mularoni and Shimin Shuai and Andr{\'{e}}s Lanz{\'{o}}s and Carl Herrmann and Yosef E. Maruvka and Ciyue Shen and Samirkumar B. Amin and Pratiti Bandopadhayay and Johanna Bertl and Keith A. Boroevich and John Busanovich and Joana Carlevaro{-}Fita and Dimple Chakravarty and Calvin Wing Yiu Chan and David Craft and Priyanka Dhingra and Klev Diamanti and Nuno A. Fonseca and Abel Gonzalez{-}Perez and Qianyun Guo and Mark P. Hamilton and Nicholas J. Haradhvala and Chen Hong and Keren Isaev and Todd A. Johnson and Malene Juul and Andr{\'{e}} Kahles and Abdullah Kahraman and Youngwook Kim and Jan Komorowski and Kiran Kumar and Sushant Kumar and Donghoon Lee and Kjong{-}Van Lehmann and Yilong Li and Eric Minwei Liu and Lucas Lochovsky and Keunchil Park and Oriol Pich and Nicola D. Roberts and Gordon Saksena and Steven E. Schumacher and Nikos Sidiropoulos and Lina Sieverling and Nasa Sinnott{-}Armstrong and Chip Stewart and David Tamborero and Jose M. C. Tubio and Husen M. Umer and Liis Uusk{\"{u}}la{-}Reimand and Claes Wadelius and Lina Wadi and Xiaotong Yao and Cheng{-}Zhong Zhang and Jing Zhang and James E. Haber and Asger Hobolth and Marcin Imielinski and Manolis Kellis and Michael S. Lawrence and Christian von Mering and Hidewaki Nakagawa and Benjamin J. Raphael and Mark A. Rubin and Chris Sander and Lincoln D. Stein and Joshua M. Stuart and Tatsuhiko Tsunoda and David A. Wheeler and Rory Johnson and J{\"{u}}ri Reimand and Mark Gerstein and Ekta Khurana and Peter J. Campbell and N{\'{u}}ria L{\'{o}}pez{-}Bigas and Gary D. Bader and Jonathan Barenboim and Rameen Beroukhim and S{\o}ren Brunak and Ken Chen and Jung Kyoon Choi and Jordi Deu{-}Pons and J. Lynn Fink and Joan Frigola and Carlo Gambacorti Passerini and Dale W. Garsed and Gad Getz and Ivo Glynne Gut and David Haan and Arif Ozgun Harmanci and Mohamed Helmy and Ermin Hodzic and Jos{\'{e}} M. G. Izarzugaza and Jong K. Kim and Jan O. Korbel and Erik Larsson and Shantao Li and Xiaotong Li and Shaoke Lou and Kathleen Marchal and I{\~{n}}igo Martincorena and Alexander Mart{\'{\i}}nez{-}Fundichely and Patrick D. McGillivray and William Meyerson and Ferran Mui{\~{n}}os and Marta Paczkowska and Kiejung Park and Jakob Skou Pedersen and Tirso Pons and Sergio Pulido{-}Tamayo and Iker Reyes{-}Salazar and Matthew A. Reyna and Carlota Rubio{-}Perez and S{\"{u}}leyman Cenk Sahinalp and Leonidas Salichos and Mark Shackleton and Raunak Shrestha and Alfonso Valencia and Miguel Vazquez and Lieven P. C. Verbeke and Jiayin Wang and Jonathan Warrell and Sebastian M. Waszak and Joachim Weischenfeldt and Guanming Wu and Jun Yu and Xuanping Zhang and Yan Zhang and Zhongming Zhao and Lihua Zou and Kadir C. Akdemir and Eva G. Alvarez and Adrian Baez{-}Ortega and Paul C. Boutros and David D. L. Bowtell and Benedikt Brors and Kathleen H. Burns and Kin Chan and Isidro Cort{\'{e}}s{-}Ciriano and Ana Dueso{-}Barroso and Andrew J. Dunford and Paul A. Edwards and Xavier Estivill and Dariush Etemadmoghadam and Milana Frenkel{-}Morgenstern and Dmitry A. Gordenin and Barbara Hutter and David T. W. Jones and Young Seok Ju and Marat D. Kazanov and Leszek J. Klimczak and Youngil Koh and Eunjung Alice Lee and Jake June{-}Koo Lee and Andy G. Lynch and Geoff MacIntyre and Florian Markowetz and Matthew Meyerson and Satoru Miyano and Fabio C. P. Navarro and Stephan Ossowski and Peter J. Park and John V. Pearson and Montserrat Puiggr{\`{o}}s and Karsten Rippe and Steven A. Roberts and Bernardo Rodriguez{-}Martin and Ralph Scully and David Torrents and Izar Villasante and Nicola Waddell and Jeremiah A. Wala and Lixing Yang and Sung{-}Soo Yoon and Jorge Zamora}, title = {Analyses of non-coding somatic drivers in 2,658 cancer whole genomes}, journal = {Nat.}, volume = {578}, number = {7793}, pages = {102--111}, year = {2020}, url = {https://doi.org/10.1038/s41586-020-1965-x}, doi = {10.1038/S41586-020-1965-X}, timestamp = {Thu, 11 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nature/RheinbayNAWSTHH20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/HellerSM19, author = {Davide Heller and Damian Szklarczyk and Christian von Mering}, title = {Tree reconciliation combined with subsampling improves large scale inference of orthologous group hierarchies}, journal = {{BMC} Bioinform.}, volume = {20}, number = {1}, pages = {228:1--228:12}, year = {2019}, url = {https://doi.org/10.1186/s12859-019-2828-z}, doi = {10.1186/S12859-019-2828-Z}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/HellerSM19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/Huerta-CepasSHH19, author = {Jaime Huerta{-}Cepas and Damian Szklarczyk and Davide Heller and Ana Hern{\'{a}}ndez{-}Plaza and Sofia K. Forslund and Helen Cook and Daniel R. Mende and Ivica Letunic and Thomas Rattei and Lars Juhl Jensen and Christian von Mering and Peer Bork}, title = {eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses}, journal = {Nucleic Acids Res.}, volume = {47}, number = {Database-Issue}, pages = {D309--D314}, year = {2019}, url = {https://doi.org/10.1093/nar/gky1085}, doi = {10.1093/NAR/GKY1085}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/nar/Huerta-CepasSHH19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/SzklarczykGLJWH19, author = {Damian Szklarczyk and Annika L. Gable and David Lyon and Alexander Junge and Stefan Wyder and Jaime Huerta{-}Cepas and Milan Simonovic and Nadezhda T. Doncheva and John H. Morris and Peer Bork and Lars Juhl Jensen and Christian von Mering}, title = {{STRING} v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets}, journal = {Nucleic Acids Res.}, volume = {47}, number = {Database-Issue}, pages = {D607--D613}, year = {2019}, url = {https://doi.org/10.1093/nar/gky1131}, doi = {10.1093/NAR/GKY1131}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/nar/SzklarczykGLJWH19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/JungeRGPS17, author = {Alexander Junge and Jan C. Refsgaard and Christian Garde and Xiaoyong Pan and Alberto Santos and Ferhat Alkan and Christian Anthon and Christian von Mering and Christopher T. Workman and Lars Juhl Jensen and Jan Gorodkin}, title = {{RAIN:} RNA-protein Association and Interaction Networks}, journal = {Database J. Biol. Databases Curation}, volume = {2017}, pages = {baw167}, year = {2017}, url = {https://doi.org/10.1093/database/baw167}, doi = {10.1093/DATABASE/BAW167}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/JungeRGPS17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/RodriguesSTM17, author = {Jo{\~{a}}o F. Matias Rodrigues and Thomas S. B. Schmidt and Janko Tackmann and Christian von Mering}, title = {MAPseq: highly efficient k-mer search with confidence estimates, for rRNA sequence analysis}, journal = {Bioinform.}, volume = {33}, number = {23}, pages = {3808--3810}, year = {2017}, url = {https://doi.org/10.1093/bioinformatics/btx517}, doi = {10.1093/BIOINFORMATICS/BTX517}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/RodriguesSTM17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/SzklarczykMC0WS17, author = {Damian Szklarczyk and John H. Morris and Helen Cook and Michael Kuhn and Stefan Wyder and Milan Simonovic and Alberto Santos and Nadezhda T. Doncheva and Alexander Roth and Peer Bork and Lars Juhl Jensen and Christian von Mering}, title = {The {STRING} database in 2017: quality-controlled protein-protein association networks, made broadly accessible}, journal = {Nucleic Acids Res.}, volume = {45}, number = {Database-Issue}, pages = {D362--D368}, year = {2017}, url = {https://doi.org/10.1093/nar/gkw937}, doi = {10.1093/NAR/GKW937}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/SzklarczykMC0WS17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/FranceschiniLMJ16, author = {Andrea Franceschini and Jianyi Lin and Christian von Mering and Lars Juhl Jensen}, title = {SVD-phy: improved prediction of protein functional associations through singular value decomposition of phylogenetic profiles}, journal = {Bioinform.}, volume = {32}, number = {7}, pages = {1085--1087}, year = {2016}, url = {https://doi.org/10.1093/bioinformatics/btv696}, doi = {10.1093/BIOINFORMATICS/BTV696}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/FranceschiniLMJ16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/Huerta-CepasSFC16, author = {Jaime Huerta{-}Cepas and Damian Szklarczyk and Kristoffer Forslund and Helen Cook and Davide Heller and Mathias C. Walter and Thomas Rattei and Daniel R. Mende and Shinichi Sunagawa and Michael Kuhn and Lars Juhl Jensen and Christian von Mering and Peer Bork}, title = {eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences}, journal = {Nucleic Acids Res.}, volume = {44}, number = {Database-Issue}, pages = {286--293}, year = {2016}, url = {https://doi.org/10.1093/nar/gkv1248}, doi = {10.1093/NAR/GKV1248}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/nar/Huerta-CepasSFC16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/SzklarczykSMJBK16, author = {Damian Szklarczyk and Alberto Santos and Christian von Mering and Lars Juhl Jensen and Peer Bork and Michael Kuhn}, title = {{STITCH} 5: augmenting protein-chemical interaction networks with tissue and affinity data}, journal = {Nucleic Acids Res.}, volume = {44}, number = {Database-Issue}, pages = {380--384}, year = {2016}, url = {https://doi.org/10.1093/nar/gkv1277}, doi = {10.1093/NAR/GKV1277}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/SzklarczykSMJBK16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/SzklarczykFWFHHS0STKBJM15, author = {Damian Szklarczyk and Andrea Franceschini and Stefan Wyder and Kristoffer Forslund and Davide Heller and Jaime Huerta{-}Cepas and Milan Simonovic and Alexander Roth and Alberto Santos and Kalliopi Tsafou and Michael Kuhn and Peer Bork and Lars Juhl Jensen and Christian von Mering}, title = {{STRING} v10: protein-protein interaction networks, integrated over the tree of life}, journal = {Nucleic Acids Res.}, volume = {43}, number = {Database-Issue}, pages = {447--452}, year = {2015}, url = {https://doi.org/10.1093/nar/gku1003}, doi = {10.1093/NAR/GKU1003}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/SzklarczykFWFHHS0STKBJM15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/RodriguesM14, author = {Jo{\~{a}}o F. Matias Rodrigues and Christian von Mering}, title = {{HPC-CLUST:} distributed hierarchical clustering for large sets of nucleotide sequences}, journal = {Bioinform.}, volume = {30}, number = {2}, pages = {287--288}, year = {2014}, url = {https://doi.org/10.1093/bioinformatics/btt657}, doi = {10.1093/BIOINFORMATICS/BTT657}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/RodriguesM14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/PowellFST0HGRCKJMB14, author = {Sean Powell and Kristoffer Forslund and Damian Szklarczyk and Kalliopi Trachana and Alexander Roth and Jaime Huerta{-}Cepas and Toni Gabald{\'{o}}n and Thomas Rattei and Christopher J. Creevey and Michael Kuhn and Lars Juhl Jensen and Christian von Mering and Peer Bork}, title = {eggNOG v4.0: nested orthology inference across 3686 organisms}, journal = {Nucleic Acids Res.}, volume = {42}, number = {Database-Issue}, pages = {231--239}, year = {2014}, url = {https://doi.org/10.1093/nar/gkt1253}, doi = {10.1093/NAR/GKT1253}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/nar/PowellFST0HGRCKJMB14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/KuhnSPBMJB14, author = {Michael Kuhn and Damian Szklarczyk and Sune Pletscher{-}Frankild and Thomas H. Blicher and Christian von Mering and Lars Juhl Jensen and Peer Bork}, title = {{STITCH} 4: integration of protein-chemical interactions with user data}, journal = {Nucleic Acids Res.}, volume = {42}, number = {Database-Issue}, pages = {401--407}, year = {2014}, url = {https://doi.org/10.1093/nar/gkt1207}, doi = {10.1093/NAR/GKT1207}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/KuhnSPBMJB14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/StockingerAABBBBBDLMLMPRSMNWXZZZA14, author = {Heinz Stockinger and Adrian M. Altenhoff and Konstantin Arnold and Amos Bairoch and Frederic B. Bastian and Sven Bergmann and Lydie Bougueleret and Philipp Bucher and Mauro Delorenzi and Lydie Lane and Philippe Le Mercier and Fr{\'{e}}d{\'{e}}rique Lisacek and Olivier Michielin and Patricia M. Palagi and Jacques Rougemont and Torsten Schwede and Christian von Mering and Erik van Nimwegen and Daniel Walther and Ioannis Xenarios and Mihaela Zavolan and Evgeny M. Zdobnov and Vincent Zoete and Ron D. Appel}, title = {Fifteen years {SIB} Swiss Institute of Bioinformatics: life science databases, tools and support}, journal = {Nucleic Acids Res.}, volume = {42}, number = {Webserver-Issue}, pages = {436--441}, year = {2014}, url = {https://doi.org/10.1093/nar/gku380}, doi = {10.1093/NAR/GKU380}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/StockingerAABBBBBDLMLMPRSMNWXZZZA14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/SchmidtRM14, author = {Thomas S. B. Schmidt and Jo{\~{a}}o F. Matias Rodrigues and Christian von Mering}, title = {Ecological Consistency of {SSU} rRNA-Based Operational Taxonomic Units at a Global Scale}, journal = {PLoS Comput. Biol.}, volume = {10}, number = {4}, year = {2014}, url = {https://doi.org/10.1371/journal.pcbi.1003594}, doi = {10.1371/JOURNAL.PCBI.1003594}, timestamp = {Thu, 10 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/SchmidtRM14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/FranceschiniSFKSRLMBMJ13, author = {Andrea Franceschini and Damian Szklarczyk and Sune Frankild and Michael Kuhn and Milan Simonovic and Alexander Roth and Jianyi Lin and Pablo Minguez and Peer Bork and Christian von Mering and Lars Juhl Jensen}, title = {{STRING} v9.1: protein-protein interaction networks, with increased coverage and integration}, journal = {Nucleic Acids Res.}, volume = {41}, number = {Database-Issue}, pages = {808--815}, year = {2013}, url = {https://doi.org/10.1093/nar/gks1094}, doi = {10.1093/NAR/GKS1094}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/FranceschiniSFKSRLMBMJ13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iwbbio/CaiKBMRB13, author = {Haoyang Cai and Nitin Kumar and Homayoun C. Bagheri and Christian von Mering and Mark D. Robinson and Michael Baudis}, editor = {Ignacio Rojas and Francisco M. Ortu{\~{n}}o Guzman}, title = {Chromothripsis-like patterns are recurring, but heterogeneously distributed features in cancer: {A} survey of 22, 347 genomic copy number profiles}, booktitle = {International Work-Conference on Bioinformatics and Biomedical Engineering, {IWBBIO} 2013, Granada, Spain, March 18-20, 2013. Proceedings}, pages = {49}, publisher = {Copicentro Editorial}, year = {2013}, url = {http://iwbbio.ugr.es/papers/iwbbio\_007.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/iwbbio/CaiKBMRB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/PowellSTRKMARLDJMB12, author = {Sean Powell and Damian Szklarczyk and Kalliopi Trachana and Alexander Roth and Michael Kuhn and Jean Muller and Roland Arnold and Thomas Rattei and Ivica Letunic and Tobias Doerks and Lars Juhl Jensen and Christian von Mering and Peer Bork}, title = {eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges}, journal = {Nucleic Acids Res.}, volume = {40}, number = {Database-Issue}, pages = {284--289}, year = {2012}, url = {https://doi.org/10.1093/nar/gkr1060}, doi = {10.1093/NAR/GKR1060}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/PowellSTRKMARLDJMB12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/KuhnSFMJB12, author = {Michael Kuhn and Damian Szklarczyk and Andrea Franceschini and Christian von Mering and Lars Juhl Jensen and Peer Bork}, title = {{STITCH} 3: zooming in on protein-chemical interactions}, journal = {Nucleic Acids Res.}, volume = {40}, number = {Database-Issue}, pages = {876--880}, year = {2012}, url = {https://doi.org/10.1093/nar/gkr1011}, doi = {10.1093/NAR/GKR1011}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/KuhnSFMJB12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/SzklarczykFKSRMDSMBJM11, author = {Damian Szklarczyk and Andrea Franceschini and Michael Kuhn and Milan Simonovic and Alexander Roth and Pablo Minguez and Tobias Doerks and Manuel Stark and Jean Muller and Peer Bork and Lars Juhl Jensen and Christian von Mering}, title = {The {STRING} database in 2011: functional interaction networks of proteins, globally integrated and scored}, journal = {Nucleic Acids Res.}, volume = {39}, number = {Database-Issue}, pages = {561--568}, year = {2011}, url = {https://doi.org/10.1093/nar/gkq973}, doi = {10.1093/NAR/GKQ973}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/SzklarczykFKSRMDSMBJM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/SchillingWACBM11, author = {Sabine Schilling and Maria Willecke and Tinri Aegerter{-}Wilmsen and Olaf A. Cirpka and Konrad Basler and Christian von Mering}, title = {Cell-Sorting at the {A/P} Boundary in the \emph{Drosophila} Wing Primordium: {A} Computational Model to Consolidate Observed Non-Local Effects of Hh Signaling}, journal = {PLoS Comput. Biol.}, volume = {7}, number = {4}, year = {2011}, url = {https://doi.org/10.1371/journal.pcbi.1002025}, doi = {10.1371/JOURNAL.PCBI.1002025}, timestamp = {Thu, 10 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/SchillingWACBM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/MullerSJLRKPMDJB10, author = {Jean Muller and Damian Szklarczyk and Philippe Julien and Ivica Letunic and Alexander Roth and Michael Kuhn and Sean Powell and Christian von Mering and Tobias Doerks and Lars Juhl Jensen and Peer Bork}, title = {eggNOG v2.0: extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations}, journal = {Nucleic Acids Res.}, volume = {38}, number = {Database-Issue}, pages = {190--195}, year = {2010}, url = {https://doi.org/10.1093/nar/gkp951}, doi = {10.1093/NAR/GKP951}, timestamp = {Sun, 17 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/MullerSJLRKPMDJB10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/KuhnSFCMJBB10, author = {Michael Kuhn and Damian Szklarczyk and Andrea Franceschini and Monica Campillos and Christian von Mering and Lars Juhl Jensen and Andreas Beyer and Peer Bork}, title = {{STITCH} 2: an interaction network database for small molecules and proteins}, journal = {Nucleic Acids Res.}, volume = {38}, number = {Database-Issue}, pages = {552--556}, year = {2010}, url = {https://doi.org/10.1093/nar/gkp937}, doi = {10.1093/NAR/GKP937}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/KuhnSFCMJBB10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/JensenKSCCMDJRSBM09, author = {Lars Juhl Jensen and Michael Kuhn and Manuel Stark and Samuel Chaffron and Christopher J. Creevey and Jean Muller and Tobias Doerks and Philippe Julien and Alexander Roth and Milan Simonovic and Peer Bork and Christian von Mering}, title = {{STRING} 8 - a global view on proteins and their functional interactions in 630 organisms}, journal = {Nucleic Acids Res.}, volume = {37}, number = {Database-Issue}, pages = {412--416}, year = {2009}, url = {https://doi.org/10.1093/nar/gkn760}, doi = {10.1093/NAR/GKN760}, timestamp = {Sun, 17 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/JensenKSCCMDJRSBM09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/JensenJKMMDB08, author = {Lars Juhl Jensen and Philippe Julien and Michael Kuhn and Christian von Mering and Jean Muller and Tobias Doerks and Peer Bork}, title = {eggNOG: automated construction and annotation of orthologous groups of genes}, journal = {Nucleic Acids Res.}, volume = {36}, number = {Database-Issue}, pages = {250--254}, year = {2008}, url = {https://doi.org/10.1093/nar/gkm796}, doi = {10.1093/NAR/GKM796}, timestamp = {Sun, 17 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/JensenJKMMDB08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/KuhnMCJB08, author = {Michael Kuhn and Christian von Mering and Monica Campillos and Lars Juhl Jensen and Peer Bork}, title = {{STITCH:} interaction networks of chemicals and proteins}, journal = {Nucleic Acids Res.}, volume = {36}, number = {Database-Issue}, pages = {684--688}, year = {2008}, url = {https://doi.org/10.1093/nar/gkm795}, doi = {10.1093/NAR/GKM795}, timestamp = {Sun, 17 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/KuhnMCJB08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/MeringJKCDKSB07, author = {Christian von Mering and Lars Juhl Jensen and Michael Kuhn and Samuel Chaffron and Tobias Doerks and Beate Kr{\"{u}}ger and Berend Snel and Peer Bork}, title = {{STRING} 7 - recent developments in the integration and prediction of protein interactions}, journal = {Nucleic Acids Res.}, volume = {35}, number = {Database-Issue}, pages = {358--362}, year = {2007}, url = {https://doi.org/10.1093/nar/gkl825}, doi = {10.1093/NAR/GKL825}, timestamp = {Sun, 17 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/MeringJKCDKSB07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/MeringJSHKFJHB05, author = {Christian von Mering and Lars Juhl Jensen and Berend Snel and Sean D. Hooper and Markus Krupp and Mathilde Foglierini and Nelly Jouffre and Martijn A. Huynen and Peer Bork}, title = {{STRING:} known and predicted protein-protein associations, integrated and transferred across organisms}, journal = {Nucleic Acids Res.}, volume = {33}, number = {Database-Issue}, pages = {433--437}, year = {2005}, url = {https://doi.org/10.1093/nar/gki005}, doi = {10.1093/NAR/GKI005}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/MeringJSHKFJHB05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/CrassAB04, author = {Torsten Crass and Iris Antes and Rico Basekow and Peer Bork and Christian Buning and Maik Christensen and Holger Claussen and Christian Ebeling and Peter Ernst and Val{\'{e}}rie Gailus{-}Durner and Karl{-}Heinz Glatting and Rolf Gohla and Frank G{\"{o}}{\ss}ling and Korbinian Grote and Karsten R. Heidtke and Alexander Herrmann and Sean O'Keeffe and O. Kie{\ss}lich and Sven Kolibal and Jan O. Korbel and Thomas Lengauer and Ines Liebich and Mark van der Linden and Hannes Luz and Kathrin Meissner and Christian von Mering and Heinz{-}Theodor Mevissen and Hans{-}Werner Mewes and Holger Michael and Martin Mokrejs and Tobias M{\"{u}}ller and Heike Pospisil and Matthias Rarey and Jens G. Reich and Ralf Schneider and Dietmar Schomburg and Steffen Schulze{-}Kremer and Knut Schwarzer and Ingolf Sommer and Stephan Springstubbe and S{\'{a}}ndor Suhai and Gnanasekaran Thoppae and Martin Vingron and Jens Warfsmann and Thomas Werner and Daniel Wetzler and Edgar Wingender and Ralf Zimmer}, title = {The Helmholtz Network for Bioinformatics: an integrative web portal for bioinformatics resources}, journal = {Bioinform.}, volume = {20}, number = {2}, pages = {268--270}, year = {2004}, url = {https://doi.org/10.1093/bioinformatics/btg398}, doi = {10.1093/BIOINFORMATICS/BTG398}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/CrassAB04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/JensenLMB04, author = {Lars Juhl Jensen and Julien Lagarde and Christian von Mering and Peer Bork}, title = {ArrayProspector: a web resource of functional associations inferred from microarray expression data}, journal = {Nucleic Acids Res.}, volume = {32}, number = {Web-Server-Issue}, pages = {445--448}, year = {2004}, url = {https://doi.org/10.1093/nar/gkh407}, doi = {10.1093/NAR/GKH407}, timestamp = {Sun, 17 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/JensenLMB04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/KrauseMB03, author = {Roland Krause and Christian von Mering and Peer Bork}, title = {A comprehensive set of protein complexes in yeast: mining large scale protein-protein interaction screens}, journal = {Bioinform.}, volume = {19}, number = {15}, pages = {1901--1908}, year = {2003}, url = {https://doi.org/10.1093/bioinformatics/btg344}, doi = {10.1093/BIOINFORMATICS/BTG344}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/KrauseMB03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/MeringHJSBS03, author = {Christian von Mering and Martijn A. Huynen and Daniel Jaeggi and Steffen Schmidt and Peer Bork and Berend Snel}, title = {{STRING:} a database of predicted functional associations between proteins}, journal = {Nucleic Acids Res.}, volume = {31}, number = {1}, pages = {258--261}, year = {2003}, url = {https://doi.org/10.1093/nar/gkg034}, doi = {10.1093/NAR/GKG034}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/nar/MeringHJSBS03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
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