BibTeX records: Burkhard Morgenstern

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@article{DBLP:journals/ploscb/BirthDM22,
  author       = {Niklas Birth and
                  Thomas Dencker and
                  Burkhard Morgenstern},
  title        = {Insertions and deletions as phylogenetic signal in an alignment-free
                  context},
  journal      = {PLoS Comput. Biol.},
  volume       = {18},
  number       = {8},
  year         = {2022},
  url          = {https://doi.org/10.1371/journal.pcbi.1010303},
  doi          = {10.1371/JOURNAL.PCBI.1010303},
  timestamp    = {Mon, 26 Sep 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/BirthDM22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChakrabortyMB21,
  author       = {Angana Chakraborty and
                  Burkhard Morgenstern and
                  Sanghamitra Bandyopadhyay},
  title        = {S-conLSH: alignment-free gapped mapping of noisy long reads},
  journal      = {{BMC} Bioinform.},
  volume       = {22},
  number       = {1},
  pages        = {64},
  year         = {2021},
  url          = {https://doi.org/10.1186/s12859-020-03918-3},
  doi          = {10.1186/S12859-020-03918-3},
  timestamp    = {Tue, 16 Aug 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/ChakrabortyMB21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeimeisterDM19,
  author       = {Chris{-}Andr{\'{e}} Leimeister and
                  Thomas Dencker and
                  Burkhard Morgenstern},
  title        = {Accurate multiple alignment of distantly related genome sequences
                  using filtered spaced word matches as anchor points},
  journal      = {Bioinform.},
  volume       = {35},
  number       = {2},
  pages        = {211--218},
  year         = {2019},
  url          = {https://doi.org/10.1093/bioinformatics/bty592},
  doi          = {10.1093/BIOINFORMATICS/BTY592},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LeimeisterDM19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LauDLBM19,
  author       = {Anna{-}Katharina Lau and
                  Svenja D{\"{o}}rrer and
                  Chris{-}Andr{\'{e}} Leimeister and
                  Christoph Bleidorn and
                  Burkhard Morgenstern},
  title        = {Read-SpaM: assembly-free and alignment-free comparison of bacterial
                  genomes with low sequencing coverage},
  journal      = {{BMC} Bioinform.},
  volume       = {20-S},
  number       = {20},
  pages        = {638},
  year         = {2019},
  url          = {https://doi.org/10.1186/s12859-019-3205-7},
  doi          = {10.1186/S12859-019-3205-7},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/LauDLBM19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/DenckerLGBSM18,
  author       = {Thomas Dencker and
                  Chris{-}Andr{\'{e}} Leimeister and
                  Michael Gerth and
                  Christoph Bleidorn and
                  Sagi Snir and
                  Burkhard Morgenstern},
  editor       = {Mathieu Blanchette and
                  A{\"{\i}}da Ouangraoua},
  title        = {Multi-SpaM: {A} Maximum-Likelihood Approach to Phylogeny Reconstruction
                  Using Multiple Spaced-Word Matches and Quartet Trees},
  booktitle    = {Comparative Genomics - 16th International Conference, {RECOMB-CG}
                  2018, Magog-Orford, QC, Canada, October 9-12, 2018, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {11183},
  pages        = {227--241},
  publisher    = {Springer},
  year         = {2018},
  url          = {https://doi.org/10.1007/978-3-030-00834-5\_13},
  doi          = {10.1007/978-3-030-00834-5\_13},
  timestamp    = {Mon, 13 May 2019 09:30:09 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/DenckerLGBSM18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/MorgensternSL17,
  author       = {Burkhard Morgenstern and
                  Svenja Sch{\"{o}}bel and
                  Chris{-}Andr{\'{e}} Leimeister},
  title        = {Phylogeny reconstruction based on the length distribution of k-mismatch
                  common substrings},
  journal      = {Algorithms Mol. Biol.},
  volume       = {12},
  number       = {1},
  pages        = {27:1--27:12},
  year         = {2017},
  url          = {https://doi.org/10.1186/s13015-017-0118-8},
  doi          = {10.1186/S13015-017-0118-8},
  timestamp    = {Fri, 13 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/almob/MorgensternSL17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeimeisterSM17,
  author       = {Chris{-}Andr{\'{e}} Leimeister and
                  Salma Sohrabi{-}Jahromi and
                  Burkhard Morgenstern},
  title        = {Fast and accurate phylogeny reconstruction using filtered spaced-word
                  matches},
  journal      = {Bioinform.},
  volume       = {33},
  number       = {7},
  pages        = {971--979},
  year         = {2017},
  url          = {https://doi.org/10.1093/bioinformatics/btw776},
  doi          = {10.1093/BIOINFORMATICS/BTW776},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LeimeisterSM17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/HahnLOLM16,
  author       = {Lars Hahn and
                  Chris{-}Andr{\'{e}} Leimeister and
                  Rachid Ounit and
                  Stefano Lonardi and
                  Burkhard Morgenstern},
  title        = {rasbhari: Optimizing Spaced Seeds for Database Searching, Read Mapping
                  and Alignment-Free Sequence Comparison},
  journal      = {PLoS Comput. Biol.},
  volume       = {12},
  number       = {10},
  year         = {2016},
  url          = {https://doi.org/10.1371/journal.pcbi.1005107},
  doi          = {10.1371/JOURNAL.PCBI.1005107},
  timestamp    = {Thu, 10 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/HahnLOLM16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/MorgensternZHL15,
  author       = {Burkhard Morgenstern and
                  Binyao Zhu and
                  Sebastian Horwege and
                  Chris Leimeister},
  title        = {Estimating evolutionary distances between genomic sequences from spaced-word
                  matches},
  journal      = {Algorithms Mol. Biol.},
  volume       = {10},
  pages        = {5},
  year         = {2015},
  url          = {https://doi.org/10.1186/s13015-015-0032-x},
  doi          = {10.1186/S13015-015-0032-X},
  timestamp    = {Fri, 13 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/almob/MorgensternZHL15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/HahnLM15,
  author       = {Lars Hahn and
                  Chris{-}Andr{\'{e}} Leimeister and
                  Burkhard Morgenstern},
  title        = {RasBhari: optimizing spaced seeds for database searching, read mapping
                  and alignment-free sequence comparison},
  journal      = {CoRR},
  volume       = {abs/1511.04001},
  year         = {2015},
  url          = {http://arxiv.org/abs/1511.04001},
  eprinttype    = {arXiv},
  eprint       = {1511.04001},
  timestamp    = {Mon, 13 Aug 2018 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/HahnLM15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeimeisterBHLM14,
  author       = {Chris{-}Andr{\'{e}} Leimeister and
                  Marcus Boden and
                  Sebastian Horwege and
                  Sebastian Lindner and
                  Burkhard Morgenstern},
  title        = {Fast alignment-free sequence comparison using spaced-word frequencies},
  journal      = {Bioinform.},
  volume       = {30},
  number       = {14},
  pages        = {1991--1999},
  year         = {2014},
  url          = {https://doi.org/10.1093/bioinformatics/btu177},
  doi          = {10.1093/BIOINFORMATICS/BTU177},
  timestamp    = {Thu, 11 Mar 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LeimeisterBHLM14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeimeisterM14,
  author       = {Chris{-}Andr{\'{e}} Leimeister and
                  Burkhard Morgenstern},
  title        = {kmacs: the \emph{k}-mismatch average common substring approach to
                  alignment-free sequence comparison},
  journal      = {Bioinform.},
  volume       = {30},
  number       = {14},
  pages        = {2000--2008},
  year         = {2014},
  url          = {https://doi.org/10.1093/bioinformatics/btu331},
  doi          = {10.1093/BIOINFORMATICS/BTU331},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LeimeisterM14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HorwegeLBHKLM14,
  author       = {Sebastian Horwege and
                  Sebastian Lindner and
                  Marcus Boden and
                  Klas Hatje and
                  Martin Kollmar and
                  Chris{-}Andr{\'{e}} Leimeister and
                  Burkhard Morgenstern},
  title        = {\emph{Spaced words} and \emph{kmacs}: fast alignment-free sequence
                  comparison based on inexact word matches},
  journal      = {Nucleic Acids Res.},
  volume       = {42},
  number       = {Webserver-Issue},
  pages        = {7--11},
  year         = {2014},
  url          = {https://doi.org/10.1093/nar/gku398},
  doi          = {10.1093/NAR/GKU398},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/HorwegeLBHKLM14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/MorgensternZHL14,
  author       = {Burkhard Morgenstern and
                  Binyao Zhu and
                  Sebastian Horwege and
                  Chris{-}Andr{\'{e}} Leimeister},
  editor       = {Daniel G. Brown and
                  Burkhard Morgenstern},
  title        = {Estimating Evolutionary Distances from Spaced-Word Matches},
  booktitle    = {Algorithms in Bioinformatics - 14th International Workshop, {WABI}
                  2014, Wroclaw, Poland, September 8-10, 2014. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {8701},
  pages        = {161--173},
  publisher    = {Springer},
  year         = {2014},
  url          = {https://doi.org/10.1007/978-3-662-44753-6\_13},
  doi          = {10.1007/978-3-662-44753-6\_13},
  timestamp    = {Tue, 14 May 2019 10:00:40 +0200},
  biburl       = {https://dblp.org/rec/conf/wabi/MorgensternZHL14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/wabi/2014,
  editor       = {Daniel G. Brown and
                  Burkhard Morgenstern},
  title        = {Algorithms in Bioinformatics - 14th International Workshop, {WABI}
                  2014, Wroclaw, Poland, September 8-10, 2014. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {8701},
  publisher    = {Springer},
  year         = {2014},
  url          = {https://doi.org/10.1007/978-3-662-44753-6},
  doi          = {10.1007/978-3-662-44753-6},
  isbn         = {978-3-662-44752-9},
  timestamp    = {Tue, 14 May 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/wabi/2014.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/AitYM13,
  author       = {Layal Al Ait and
                  Zaher Yamak and
                  Burkhard Morgenstern},
  title        = {{DIALIGN} at {GOBICS} - multiple sequence alignment using various
                  sources of external information},
  journal      = {Nucleic Acids Res.},
  volume       = {41},
  number       = {Webserver-Issue},
  pages        = {3--7},
  year         = {2013},
  url          = {https://doi.org/10.1093/nar/gkt283},
  doi          = {10.1093/NAR/GKT283},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/AitYM13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/BodenSHLLM13,
  author       = {Marcus Boden and
                  Martin Sch{\"{o}}neich and
                  Sebastian Horwege and
                  Sebastian Lindner and
                  Chris Leimeister and
                  Burkhard Morgenstern},
  editor       = {Tim Bei{\ss}barth and
                  Martin Kollmar and
                  Andreas Leha and
                  Burkhard Morgenstern and
                  Anne{-}Kathrin Schultz and
                  Stephan Waack and
                  Edgar Wingender},
  title        = {Alignment-free sequence comparison with spaced k-mers},
  booktitle    = {German Conference on Bioinformatics 2013, {GCB} 2013, September 10-13,
                  2013, G{\"{o}}ttingen, Germany},
  series       = {OASIcs},
  volume       = {34},
  pages        = {24--34},
  publisher    = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
  year         = {2013},
  url          = {https://doi.org/10.4230/OASIcs.GCB.2013.24},
  doi          = {10.4230/OASICS.GCB.2013.24},
  timestamp    = {Tue, 15 Feb 2022 09:40:04 +0100},
  biburl       = {https://dblp.org/rec/conf/gcb/BodenSHLLM13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/gcb/2013,
  editor       = {Tim Bei{\ss}barth and
                  Martin Kollmar and
                  Andreas Leha and
                  Burkhard Morgenstern and
                  Anne{-}Kathrin Schultz and
                  Stephan Waack and
                  Edgar Wingender},
  title        = {German Conference on Bioinformatics 2013, {GCB} 2013, September 10-13,
                  2013, G{\"{o}}ttingen, Germany},
  series       = {OASIcs},
  volume       = {34},
  publisher    = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
  year         = {2013},
  isbn         = {978-3-939897-59-0},
  timestamp    = {Tue, 15 Feb 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/gcb/2013.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SchultzBAGMZDS12,
  author       = {Anne{-}Kathrin Schultz and
                  Ingo Bulla and
                  Mariama Abdou{-}Chekaraou and
                  Emmanuel Gordien and
                  Burkhard Morgenstern and
                  Fabien Zoulim and
                  Paul D{\'{e}}ny and
                  Mario Stanke},
  title        = {jpHMM: recombination analysis in viruses with circular genomes such
                  as the hepatitis {B} virus},
  journal      = {Nucleic Acids Res.},
  volume       = {40},
  number       = {Web-Server-Issue},
  pages        = {193--198},
  year         = {2012},
  url          = {https://doi.org/10.1093/nar/gks414},
  doi          = {10.1093/NAR/GKS414},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/SchultzBAGMZDS12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibe/AitCM12,
  author       = {Layal Al Ait and
                  Eduardo Corel and
                  Burkhard Morgenstern},
  title        = {Using protein-domain information for multiple sequence alignment},
  booktitle    = {12th {IEEE} International Conference on Bioinformatics {\&} Bioengineering,
                  {BIBE} 2012, Larnaca, Cyprus, November 11-13, 2012},
  pages        = {163--168},
  publisher    = {{IEEE} Computer Society},
  year         = {2012},
  url          = {https://doi.org/10.1109/BIBE.2012.6399667},
  doi          = {10.1109/BIBE.2012.6399667},
  timestamp    = {Fri, 24 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bibe/AitCM12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/UnterthinerSBMSB11,
  author       = {Thomas Unterthiner and
                  Anne{-}Kathrin Schultz and
                  Jan Bulla and
                  Burkhard Morgenstern and
                  Mario Stanke and
                  Ingo Bulla},
  title        = {Detection of viral sequence fragments of {HIV-1} subfamilies yet unknown},
  journal      = {{BMC} Bioinform.},
  volume       = {12},
  pages        = {93},
  year         = {2011},
  url          = {https://doi.org/10.1186/1471-2105-12-93},
  doi          = {10.1186/1471-2105-12-93},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/UnterthinerSBMSB11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TruongGMG11,
  author       = {Cong V. C. Truong and
                  Linn F. Groeneveld and
                  Burkhard Morgenstern and
                  Eildert Groeneveld},
  title        = {MolabIS - An Integrated Information System for Storing and Managing
                  Molecular Genetics Data},
  journal      = {{BMC} Bioinform.},
  volume       = {12},
  pages        = {425},
  year         = {2011},
  url          = {https://doi.org/10.1186/1471-2105-12-425},
  doi          = {10.1186/1471-2105-12-425},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/TruongGMG11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CorelPM10,
  author       = {Eduardo Corel and
                  Florian Pitschi and
                  Burkhard Morgenstern},
  title        = {A \emph{min-cut} algorithm for the consistency problem in multiple
                  sequence alignment},
  journal      = {Bioinform.},
  volume       = {26},
  number       = {8},
  pages        = {1015--1021},
  year         = {2010},
  url          = {https://doi.org/10.1093/bioinformatics/btq082},
  doi          = {10.1093/BIOINFORMATICS/BTQ082},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/CorelPM10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BullaSSZLKMS10,
  author       = {Ingo Bulla and
                  Anne{-}Kathrin Schultz and
                  Fabian Schreiber and
                  Ming Zhang and
                  Thomas Leitner and
                  Bette T. Korber and
                  Burkhard Morgenstern and
                  Mario Stanke},
  title        = {{HIV} classification using the coalescent theory},
  journal      = {Bioinform.},
  volume       = {26},
  number       = {11},
  pages        = {1409--1415},
  year         = {2010},
  url          = {https://doi.org/10.1093/bioinformatics/btq159},
  doi          = {10.1093/BIOINFORMATICS/BTQ159},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BullaSSZLKMS10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SubramanianHSMCM10,
  author       = {Amarendran Ramaswami Subramanian and
                  Suvrat Hiran and
                  Rasmus Steinkamp and
                  Peter Meinicke and
                  Eduardo Corel and
                  Burkhard Morgenstern},
  title        = {{DIALIGN-TX} and multiple protein alignment using secondary structure
                  information at {GOBICS}},
  journal      = {Nucleic Acids Res.},
  volume       = {38},
  number       = {Web-Server-Issue},
  pages        = {19--22},
  year         = {2010},
  url          = {https://doi.org/10.1093/nar/gkq442},
  doi          = {10.1093/NAR/GKQ442},
  timestamp    = {Wed, 20 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/SubramanianHSMCM10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SchreiberPEWM09,
  author       = {Fabian Schreiber and
                  Kerstin Pick and
                  Dirk Erpenbeck and
                  Gert W{\"{o}}rheide and
                  Burkhard Morgenstern},
  title        = {OrthoSelect: a protocol for selecting orthologous groups in phylogenomics},
  journal      = {{BMC} Bioinform.},
  volume       = {10},
  year         = {2009},
  url          = {https://doi.org/10.1186/1471-2105-10-219},
  doi          = {10.1186/1471-2105-10-219},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/SchreiberPEWM09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fgcs/SommerfeldLSMR09,
  author       = {Dietmar Sommerfeld and
                  Thomas Lingner and
                  Mario Stanke and
                  Burkhard Morgenstern and
                  Harald Richter},
  title        = {{AUGUSTUS} at MediGRID: Adaption of a bioinformatics application to
                  grid computing for efficient genome analysis},
  journal      = {Future Gener. Comput. Syst.},
  volume       = {25},
  number       = {3},
  pages        = {337--345},
  year         = {2009},
  url          = {https://doi.org/10.1016/j.future.2008.05.010},
  doi          = {10.1016/J.FUTURE.2008.05.010},
  timestamp    = {Wed, 19 Feb 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/fgcs/SommerfeldLSMR09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SchreiberWM09,
  author       = {Fabian Schreiber and
                  Gert W{\"{o}}rheide and
                  Burkhard Morgenstern},
  title        = {OrthoSelect: a web server for selecting orthologous gene alignments
                  from {EST} sequences},
  journal      = {Nucleic Acids Res.},
  volume       = {37},
  number       = {Web-Server-Issue},
  pages        = {185--188},
  year         = {2009},
  url          = {https://doi.org/10.1093/nar/gkp434},
  doi          = {10.1093/NAR/GKP434},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/SchreiberWM09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SchultzZBLKMS09,
  author       = {Anne{-}Kathrin Schultz and
                  Ming Zhang and
                  Ingo Bulla and
                  Thomas Leitner and
                  Bette T. Korber and
                  Burkhard Morgenstern and
                  Mario Stanke},
  title        = {jpHMM: Improving the reliability of recombination prediction in {HIV-1}},
  journal      = {Nucleic Acids Res.},
  volume       = {37},
  number       = {Web-Server-Issue},
  pages        = {647--651},
  year         = {2009},
  url          = {https://doi.org/10.1093/nar/gkp371},
  doi          = {10.1093/NAR/GKP371},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/SchultzZBLKMS09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/MeinickeLKFGFKM08,
  author       = {Peter Meinicke and
                  Thomas Lingner and
                  Alexander Kaever and
                  Kirstin Feussner and
                  Cornelia G{\"{o}}bel and
                  Ivo Feussner and
                  Petr Karlovsky and
                  Burkhard Morgenstern},
  title        = {Metabolite-based clustering and visualization of mass spectrometry
                  data using one-dimensional self-organizing maps},
  journal      = {Algorithms Mol. Biol.},
  volume       = {3},
  year         = {2008},
  url          = {https://doi.org/10.1186/1748-7188-3-9},
  doi          = {10.1186/1748-7188-3-9},
  timestamp    = {Fri, 13 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/almob/MeinickeLKFGFKM08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/SubramanianKM08,
  author       = {Amarendran Ramaswami Subramanian and
                  Michael Kaufmann and
                  Burkhard Morgenstern},
  title        = {{DIALIGN-TX:} greedy and progressive approaches for segment-based
                  multiple sequence alignment},
  journal      = {Algorithms Mol. Biol.},
  volume       = {3},
  year         = {2008},
  url          = {https://doi.org/10.1186/1748-7188-3-6},
  doi          = {10.1186/1748-7188-3-6},
  timestamp    = {Wed, 20 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/almob/SubramanianKM08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/WagnerMD08,
  author       = {Holger Wagner and
                  Burkhard Morgenstern and
                  Andreas W. M. Dress},
  title        = {Stability of multiple alignments and phylogenetic trees: an analysis
                  of ABC-transporter proteins family},
  journal      = {Algorithms Mol. Biol.},
  volume       = {3},
  year         = {2008},
  url          = {https://doi.org/10.1186/1748-7188-3-15},
  doi          = {10.1186/1748-7188-3-15},
  timestamp    = {Fri, 13 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/almob/WagnerMD08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HoffTLDMM08,
  author       = {Katharina Jasmin Hoff and
                  Maike Tech and
                  Thomas Lingner and
                  Rolf Daniel and
                  Burkhard Morgenstern and
                  Peter Meinicke},
  title        = {Gene prediction in metagenomic fragments: {A} large scale machine
                  learning approach},
  journal      = {{BMC} Bioinform.},
  volume       = {9},
  year         = {2008},
  url          = {https://doi.org/10.1186/1471-2105-9-217},
  doi          = {10.1186/1471-2105-9-217},
  timestamp    = {Tue, 24 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/HoffTLDMM08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/MorgensternPPS06,
  author       = {Burkhard Morgenstern and
                  Sonja J. Prohaska and
                  Dirk P{\"{o}}hler and
                  Peter F. Stadler},
  title        = {Multiple sequence alignment with user-defined anchor points},
  journal      = {Algorithms Mol. Biol.},
  volume       = {1},
  year         = {2006},
  url          = {https://doi.org/10.1186/1748-7188-1-6},
  doi          = {10.1186/1748-7188-1-6},
  timestamp    = {Fri, 13 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/almob/MorgensternPPS06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/MorgensternS06,
  author       = {Burkhard Morgenstern and
                  Peter F. Stadler},
  title        = {New journal: Algorithms for Molecular Biology},
  journal      = {Algorithms Mol. Biol.},
  volume       = {1},
  year         = {2006},
  url          = {https://doi.org/10.1186/1748-7188-1-1},
  doi          = {10.1186/1748-7188-1-1},
  timestamp    = {Fri, 13 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/almob/MorgensternS06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/StankeSMW06,
  author       = {Mario Stanke and
                  Oliver Sch{\"{o}}ffmann and
                  Burkhard Morgenstern and
                  Stephan Waack},
  title        = {Gene prediction in eukaryotes with a generalized hidden Markov model
                  that uses hints from external sources},
  journal      = {{BMC} Bioinform.},
  volume       = {7},
  pages        = {62},
  year         = {2006},
  url          = {https://doi.org/10.1186/1471-2105-7-62},
  doi          = {10.1186/1471-2105-7-62},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/StankeSMW06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SchultzZLKKMS06,
  author       = {Anne{-}Kathrin Schultz and
                  Ming Zhang and
                  Thomas Leitner and
                  Carla Kuiken and
                  Bette T. Korber and
                  Burkhard Morgenstern and
                  Mario Stanke},
  title        = {A jumping profile Hidden Markov Model and applications to recombination
                  sites in {HIV} and {HCV} genomes},
  journal      = {{BMC} Bioinform.},
  volume       = {7},
  pages        = {265},
  year         = {2006},
  url          = {https://doi.org/10.1186/1471-2105-7-265},
  doi          = {10.1186/1471-2105-7-265},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/SchultzZLKKMS06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/StankeKGHWM06,
  author       = {Mario Stanke and
                  Oliver Keller and
                  Irfan Gunduz and
                  Alec Hayes and
                  Stephan Waack and
                  Burkhard Morgenstern},
  title        = {{AUGUSTUS:} \emph{ab initio} prediction of alternative transcripts},
  journal      = {Nucleic Acids Res.},
  volume       = {34},
  number       = {Web-Server-Issue},
  pages        = {435--439},
  year         = {2006},
  url          = {https://doi.org/10.1093/nar/gkl200},
  doi          = {10.1093/NAR/GKL200},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/StankeKGHWM06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ZhangSCKLKMS06,
  author       = {Ming Zhang and
                  Anne{-}Kathrin Schultz and
                  Charles Calef and
                  Carla Kuiken and
                  Thomas Leitner and
                  Bette T. Korber and
                  Burkhard Morgenstern and
                  Mario Stanke},
  title        = {jpHMM at {GOBICS:} a web server to detect genomic recombinations in
                  {HIV-1}},
  journal      = {Nucleic Acids Res.},
  volume       = {34},
  number       = {Web-Server-Issue},
  pages        = {463--465},
  year         = {2006},
  url          = {https://doi.org/10.1093/nar/gkl255},
  doi          = {10.1093/NAR/GKL255},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/ZhangSCKLKMS06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/TechMM06,
  author       = {Maike Tech and
                  Burkhard Morgenstern and
                  Peter Meinicke},
  title        = {{TICO:} a tool for postprocessing the predictions of prokaryotic translation
                  initiation sites},
  journal      = {Nucleic Acids Res.},
  volume       = {34},
  number       = {Web-Server-Issue},
  pages        = {588--590},
  year         = {2006},
  url          = {https://doi.org/10.1093/nar/gkl313},
  doi          = {10.1093/NAR/GKL313},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/TechMM06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MorgensternWPSSSSW05,
  author       = {Burkhard Morgenstern and
                  Nadine Werner and
                  Sonja J. Prohaska and
                  Rasmus Steinkamp and
                  Isabelle Schneider and
                  Amarendran Ramaswami Subramanian and
                  Peter F. Stadler and
                  Jan Weyer{-}Menkhoff},
  title        = {Multiple sequence alignment with user-defined constraints at {GOBICS}},
  journal      = {Bioinform.},
  volume       = {21},
  number       = {7},
  pages        = {1271--1273},
  year         = {2005},
  url          = {https://doi.org/10.1093/bioinformatics/bti142},
  doi          = {10.1093/BIOINFORMATICS/BTI142},
  timestamp    = {Wed, 20 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MorgensternWPSSSSW05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TechPMM05,
  author       = {Maike Tech and
                  Nico Pfeifer and
                  Burkhard Morgenstern and
                  Peter Meinicke},
  title        = {{TICO:} a tool for improving predictions of prokaryotic translation
                  initiation sites},
  journal      = {Bioinform.},
  volume       = {21},
  number       = {17},
  pages        = {3568--3569},
  year         = {2005},
  url          = {https://doi.org/10.1093/bioinformatics/bti563},
  doi          = {10.1093/BIOINFORMATICS/BTI563},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/TechPMM05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SubramanianWKM05,
  author       = {Amarendran Ramaswami Subramanian and
                  Jan Weyer{-}Menkhoff and
                  Michael Kaufmann and
                  Burkhard Morgenstern},
  title        = {{DIALIGN-T:} An improved algorithm for segment-based multiple sequence
                  alignment},
  journal      = {{BMC} Bioinform.},
  volume       = {6},
  pages        = {66},
  year         = {2005},
  url          = {https://doi.org/10.1186/1471-2105-6-66},
  doi          = {10.1186/1471-2105-6-66},
  timestamp    = {Wed, 20 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/SubramanianWKM05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/StankeM05,
  author       = {Mario Stanke and
                  Burkhard Morgenstern},
  title        = {{AUGUSTUS:} a web server for gene prediction in eukaryotes that allows
                  user-defined constraints},
  journal      = {Nucleic Acids Res.},
  volume       = {33},
  number       = {Web-Server-Issue},
  pages        = {465--467},
  year         = {2005},
  url          = {https://doi.org/10.1093/nar/gki458},
  doi          = {10.1093/NAR/GKI458},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/StankeM05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PohlerWSM05,
  author       = {Dirk P{\"{o}}hler and
                  Nadine Werner and
                  Rasmus Steinkamp and
                  Burkhard Morgenstern},
  title        = {Multiple alignment of genomic sequences using CHAOS, {DIALIGN} and
                  {ABC}},
  journal      = {Nucleic Acids Res.},
  volume       = {33},
  number       = {Web-Server-Issue},
  pages        = {532--534},
  year         = {2005},
  url          = {https://doi.org/10.1093/nar/gki386},
  doi          = {10.1093/NAR/GKI386},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/PohlerWSM05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SchmollingerNKM04,
  author       = {Martin Schmollinger and
                  Kay Nieselt and
                  Michael Kaufmann and
                  Burkhard Morgenstern},
  title        = {{DIALIGN} {P:} Fast pair-wise and multiple sequence alignment using
                  parallel processors},
  journal      = {{BMC} Bioinform.},
  volume       = {5},
  pages        = {128},
  year         = {2004},
  url          = {https://doi.org/10.1186/1471-2105-5-128},
  doi          = {10.1186/1471-2105-5-128},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/SchmollingerNKM04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MeinickeTMM04,
  author       = {Peter Meinicke and
                  Maike Tech and
                  Burkhard Morgenstern and
                  Rainer Merkl},
  title        = {Oligo kernels for datamining on biological sequences: a case study
                  on prokaryotic translation initiation sites},
  journal      = {{BMC} Bioinform.},
  volume       = {5},
  pages        = {169},
  year         = {2004},
  url          = {https://doi.org/10.1186/1471-2105-5-169},
  doi          = {10.1186/1471-2105-5-169},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/MeinickeTMM04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Morgenstern04,
  author       = {Burkhard Morgenstern},
  title        = {{DIALIGN:} multiple {DNA} and protein sequence alignment at BiBiServ},
  journal      = {Nucleic Acids Res.},
  volume       = {32},
  number       = {Web-Server-Issue},
  pages        = {33--36},
  year         = {2004},
  url          = {https://doi.org/10.1093/nar/gkh373},
  doi          = {10.1093/NAR/GKH373},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/Morgenstern04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BrudnoSM04,
  author       = {Michael Brudno and
                  Rasmus Steinkamp and
                  Burkhard Morgenstern},
  title        = {The {CHAOS/DIALIGN} {WWW} server for multiple alignment of genomic
                  sequences},
  journal      = {Nucleic Acids Res.},
  volume       = {32},
  number       = {Web-Server-Issue},
  pages        = {41--44},
  year         = {2004},
  url          = {https://doi.org/10.1093/nar/gkh361},
  doi          = {10.1093/NAR/GKH361},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/BrudnoSM04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/TaherRGSM04,
  author       = {Leila Taher and
                  Oliver Rinner and
                  Saurabh Garg and
                  Alexander Sczyrba and
                  Burkhard Morgenstern},
  title        = {AGenDA: gene prediction by cross-species sequence comparison},
  journal      = {Nucleic Acids Res.},
  volume       = {32},
  number       = {Web-Server-Issue},
  pages        = {305--308},
  year         = {2004},
  url          = {https://doi.org/10.1093/nar/gkh386},
  doi          = {10.1093/NAR/GKH386},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/TaherRGSM04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/StankeSWM04,
  author       = {Mario Stanke and
                  Rasmus Steinkamp and
                  Stephan Waack and
                  Burkhard Morgenstern},
  title        = {{AUGUSTUS:} a web server for gene finding in eukaryotes},
  journal      = {Nucleic Acids Res.},
  volume       = {32},
  number       = {Web-Server-Issue},
  pages        = {309--312},
  year         = {2004},
  url          = {https://doi.org/10.1093/nar/gkh379},
  doi          = {10.1093/NAR/GKH379},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/StankeSWM04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/MorgensternPWWSSS04,
  author       = {Burkhard Morgenstern and
                  Sonja J. Prohaska and
                  Nadine Werner and
                  Jan Weyer{-}Menkhoff and
                  Isabelle Schneider and
                  Amarendran Ramaswami Subramanian and
                  Peter F. Stadler},
  editor       = {Robert Giegerich and
                  Jens Stoye},
  title        = {Multiple sequence alignment with user-defined constraints},
  booktitle    = {Proceedings of the German Conference on Bioinformatics {(GCB} 2004),
                  Bielefeld, Germany, October 4-6, 2004},
  series       = {{LNI}},
  volume       = {{P-53}},
  pages        = {25--36},
  publisher    = {{GI}},
  year         = {2004},
  url          = {https://dl.gi.de/handle/20.500.12116/28673},
  timestamp    = {Wed, 20 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/gcb/MorgensternPWWSSS04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MorgensternGSD03,
  author       = {Burkhard Morgenstern and
                  Sachin Goel and
                  Alexander Sczyrba and
                  Andreas W. M. Dress},
  title        = {AltAVisT: Comparing alternative multiple sequence alignments},
  journal      = {Bioinform.},
  volume       = {19},
  number       = {3},
  pages        = {425--426},
  year         = {2003},
  url          = {https://doi.org/10.1093/bioinformatics/btf882},
  doi          = {10.1093/BIOINFORMATICS/BTF882},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MorgensternGSD03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TaherRGSBBM03,
  author       = {Leila Taher and
                  Oliver Rinner and
                  Saurabh Garg and
                  Alexander Sczyrba and
                  Michael Brudno and
                  Serafim Batzoglou and
                  Burkhard Morgenstern},
  title        = {AGenDA: homology-based gene prediction},
  journal      = {Bioinform.},
  volume       = {19},
  number       = {12},
  pages        = {1575--1577},
  year         = {2003},
  url          = {https://doi.org/10.1093/bioinformatics/btg181},
  doi          = {10.1093/BIOINFORMATICS/BTG181},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/TaherRGSBBM03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BrudnoCGBM03,
  author       = {Michael Brudno and
                  Michael Chapman and
                  Berthold G{\"{o}}ttgens and
                  Serafim Batzoglou and
                  Burkhard Morgenstern},
  title        = {Fast and sensitive multiple alignment of large genomic sequences},
  journal      = {{BMC} Bioinform.},
  volume       = {4},
  pages        = {66},
  year         = {2003},
  url          = {https://doi.org/10.1186/1471-2105-4-66},
  doi          = {10.1186/1471-2105-4-66},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/BrudnoCGBM03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eccb/SammethMS03,
  author       = {Michael Sammeth and
                  Burkhard Morgenstern and
                  Jens Stoye},
  title        = {Divide-and-conquer multiple alignment with segment-based constraints},
  booktitle    = {Proceedings of the European Conference on Computational Biology {(ECCB}
                  2003), September 27-30, 2003, Paris, France},
  pages        = {189--195},
  year         = {2003},
  timestamp    = {Mon, 27 Oct 2003 15:56:17 +0100},
  biburl       = {https://dblp.org/rec/conf/eccb/SammethMS03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/appml/Morgenstern02,
  author       = {Burkhard Morgenstern},
  title        = {A simple and space-efficient fragment-chaining algorithm for alignment
                  of {DNA} and protein sequences},
  journal      = {Appl. Math. Lett.},
  volume       = {15},
  number       = {1},
  pages        = {11--16},
  year         = {2002},
  url          = {https://doi.org/10.1016/S0893-9659(01)00085-4},
  doi          = {10.1016/S0893-9659(01)00085-4},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/appml/Morgenstern02.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MorgensternRAHMDM02,
  author       = {Burkhard Morgenstern and
                  Oliver Rinner and
                  Sa{\"{\i}}d Abdedda{\"{\i}}m and
                  Dirk Haase and
                  Klaus F. X. Mayer and
                  Andreas W. M. Dress and
                  Hans{-}Werner Mewes},
  title        = {Exon discovery by genomic sequence alignment},
  journal      = {Bioinform.},
  volume       = {18},
  number       = {6},
  pages        = {777--787},
  year         = {2002},
  url          = {https://doi.org/10.1093/bioinformatics/18.6.777},
  doi          = {10.1093/BIOINFORMATICS/18.6.777},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MorgensternRAHMDM02.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/RinnerM02,
  author       = {Oliver Rinner and
                  Burkhard Morgenstern},
  title        = {AGenDA: Gene prediction by comparative sequence analysis},
  journal      = {Silico Biol.},
  volume       = {2},
  number       = {3},
  pages        = {195--205},
  year         = {2002},
  url          = {http://content.iospress.com/articles/in-silico-biology/isb00041},
  timestamp    = {Thu, 20 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/isb/RinnerM02.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MewesFGMMMMMRW03,
  author       = {Hans{-}Werner Mewes and
                  Dmitrij Frishman and
                  Ulrich G{\"{u}}ldener and
                  Gertrud Mannhaupt and
                  Klaus F. X. Mayer and
                  Martin Mokrejs and
                  Burkhard Morgenstern and
                  Martin M{\"{u}}nsterk{\"{o}}tter and
                  Stephen Rudd and
                  B. Weil},
  title        = {{MIPS:} a database for genomes and protein sequences},
  journal      = {Nucleic Acids Res.},
  volume       = {30},
  number       = {1},
  pages        = {31--34},
  year         = {2002},
  url          = {https://doi.org/10.1093/nar/30.1.31},
  doi          = {10.1093/NAR/30.1.31},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/MewesFGMMMMMRW03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/csb/BrudndM02,
  author       = {Michael Brudno and
                  Burkhard Morgenstern},
  title        = {Fast and Sensitive Alignment of Large Genomic Sequences},
  booktitle    = {1st {IEEE} Computer Society Bioinformatics Conference, {CSB} 2002,
                  Stanford, CA, USA, August 14-16, 2002},
  pages        = {138},
  publisher    = {{IEEE} Computer Society},
  year         = {2002},
  url          = {https://doi.org/10.1109/CSB.2002.1039337},
  doi          = {10.1109/CSB.2002.1039337},
  timestamp    = {Thu, 23 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/csb/BrudndM02.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GeierKFMM01,
  author       = {Birgitta Geier and
                  Gabi Kastenm{\"{u}}ller and
                  Matthias Fellenberg and
                  Hans{-}Werner Mewes and
                  Burkhard Morgenstern},
  title        = {The {HIB} database of annotated UniGene clusters},
  journal      = {Bioinform.},
  volume       = {17},
  number       = {6},
  pages        = {571--572},
  year         = {2001},
  url          = {https://doi.org/10.1093/bioinformatics/17.6.571},
  doi          = {10.1093/BIOINFORMATICS/17.6.571},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/GeierKFMM01.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/RinnerM01,
  author       = {Oliver Rinner and
                  Burkhard Morgenstern},
  editor       = {Edgar Wingender},
  title        = {Gene prediction by comparative sequence analysis},
  booktitle    = {Computer science and biology: Proceedings of the German Conference
                  on Bioinformatics, {GCB} 2001, October 7-10, 2001, Braunschweig, Germany},
  pages        = {131--134},
  publisher    = {German Research Center for Biotechnology},
  year         = {2001},
  timestamp    = {Tue, 15 Mar 2005 13:06:29 +0100},
  biburl       = {https://dblp.org/rec/conf/gcb/RinnerM01.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Morgenstern00,
  author       = {Burkhard Morgenstern},
  title        = {A space-efficient algorithm for aligning large genomic sequences},
  journal      = {Bioinform.},
  volume       = {16},
  number       = {10},
  pages        = {948--949},
  year         = {2000},
  url          = {https://doi.org/10.1093/bioinformatics/16.10.948},
  doi          = {10.1093/BIOINFORMATICS/16.10.948},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/Morgenstern00.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/jobim/AbdeddaimM00,
  author       = {Sa{\"{\i}}d Abdedda{\"{\i}}m and
                  Burkhard Morgenstern},
  editor       = {Olivier Gascuel and
                  Marie{-}France Sagot},
  title        = {Speeding Up the {DIALIGN} Multiple Alignment Program by Using the
                  'Greedy Alignment of BIOlogical Sequences LIBrary' {(GABIOS-LIB)}},
  booktitle    = {Computational Biology, First International Conference on Biology,
                  Informatics, and Mathematics, {JOBIM} 2000, Montpellier, France, May
                  3-5, 2000, Selected Papers},
  series       = {Lecture Notes in Computer Science},
  volume       = {2066},
  pages        = {1--11},
  publisher    = {Springer},
  year         = {2000},
  url          = {https://doi.org/10.1007/3-540-45727-5\_1},
  doi          = {10.1007/3-540-45727-5\_1},
  timestamp    = {Tue, 14 May 2019 10:00:36 +0200},
  biburl       = {https://dblp.org/rec/conf/jobim/AbdeddaimM00.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LenhofMR99,
  author       = {Hans{-}Peter Lenhof and
                  Burkhard Morgenstern and
                  Knut Reinert},
  title        = {An exact solution for the segment-to-segment multiple sequence alignment
                  problem},
  journal      = {Bioinform.},
  volume       = {15},
  number       = {3},
  pages        = {203--210},
  year         = {1999},
  url          = {https://doi.org/10.1093/bioinformatics/15.3.203},
  doi          = {10.1093/BIOINFORMATICS/15.3.203},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LenhofMR99.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Morgenstern99,
  author       = {Burkhard Morgenstern},
  title        = {{DIALIGN} 2: improvement of the segment-to-segment approach to multiple
                  sequence alignment},
  journal      = {Bioinform.},
  volume       = {15},
  number       = {3},
  pages        = {211--218},
  year         = {1999},
  url          = {https://doi.org/10.1093/bioinformatics/15.3.211},
  doi          = {10.1093/BIOINFORMATICS/15.3.211},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/Morgenstern99.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MorgensternFDW98,
  author       = {Burkhard Morgenstern and
                  Kornelie Frech and
                  Andreas W. M. Dress and
                  Thomas Werner},
  title        = {{DIALIGN:} finding local similarities by multiple sequence alignment},
  journal      = {Bioinform.},
  volume       = {14},
  number       = {3},
  pages        = {290--294},
  year         = {1998},
  url          = {https://doi.org/10.1093/bioinformatics/14.3.290},
  doi          = {10.1093/BIOINFORMATICS/14.3.290},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MorgensternFDW98.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/Morgenstern98,
  author       = {Burkhard Morgenstern},
  title        = {{DIALIGN2:} Improvement of the segment to segment approach to multiple
                  sequence alignment},
  booktitle    = {Proceedings of the German Conference on Bioinformatics, {GCB} 1998,
                  University of Cologne, Germany, October 1998},
  publisher    = {Oxford University Press},
  year         = {1998},
  timestamp    = {Fri, 02 Aug 2019 15:48:14 +0200},
  biburl       = {https://dblp.org/rec/conf/gcb/Morgenstern98.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/ReinertLM98,
  author       = {Knut Reinert and
                  Hans{-}Peter Lenhof and
                  Burkhard Morgenstern},
  title        = {An exact solution for the Segment-to-Segment multiple sequence alignment
                  problem},
  booktitle    = {Proceedings of the German Conference on Bioinformatics, {GCB} 1998,
                  University of Cologne, Germany, October 1998},
  publisher    = {Oxford University Press},
  year         = {1998},
  timestamp    = {Fri, 02 Aug 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/gcb/ReinertLM98.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/MorgensternAHD98,
  author       = {Burkhard Morgenstern and
                  William R. Atchley and
                  Klaus Hahn and
                  Andreas W. M. Dress},
  editor       = {Janice I. Glasgow and
                  Timothy G. Littlejohn and
                  Fran{\c{c}}ois Major and
                  Richard H. Lathrop and
                  David Sankoff and
                  Christoph W. Sensen},
  title        = {Segment-Based Scores for Pairwise and Multiple Sequence Alignments},
  booktitle    = {Proceedings of the 6th International Conference on Intelligent Systems
                  for Molecular Biology (ISMB-98), Montr{\'{e}}al, Qu{\'{e}}bec,
                  Canada, June 28 - July 1, 1998},
  pages        = {115--121},
  publisher    = {{AAAI}},
  year         = {1998},
  url          = {http://www.aaai.org/Library/ISMB/1998/ismb98-014.php},
  timestamp    = {Thu, 27 Jun 2019 11:28:34 +0200},
  biburl       = {https://dblp.org/rec/conf/ismb/MorgensternAHD98.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/MorgensternW97,
  author       = {Burkhard Morgenstern and
                  Thomas Werner},
  title        = {Dialign 1.0: Multiple alignment by Segment rather than by Position
                  comparison},
  booktitle    = {Proceedings of the German Conference on Bioinformatics, {GCB} 1997,
                  Kloster Irsee, Bavaria, Germany, September 1997},
  pages        = {69--71},
  publisher    = {Oxford University Press},
  year         = {1997},
  timestamp    = {Fri, 02 Aug 2019 15:48:15 +0200},
  biburl       = {https://dblp.org/rec/conf/gcb/MorgensternW97.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@phdthesis{DBLP:phd/dnb/Morgenstern96,
  author       = {Burkhard Morgenstern},
  title        = {Sequenzalignment auf der Basis von Segmentvergleichen},
  school       = {Bielefeld University, Germany},
  year         = {1996},
  url          = {https://d-nb.info/948494751},
  timestamp    = {Sat, 17 Jul 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/phd/dnb/Morgenstern96.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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