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ORCIDBibTeX records: Kary A. C. S. Ocaña
@inproceedings{DBLP:conf/sbac-pad/PortoCOOBC23,
author = {Alexandre H. L. Porto and
Micaella Coelho and
Kary A. C. S. Oca{\~{n}}a and
Carla Osthoff and
Francieli Boito and
Douglas de O. Cardoso},
title = {An Exploratory Study of Deep Learning for Predicting Computational
Tasks Behavior in {HPC} Systems},
booktitle = {International Symposium on Computer Architecture and High Performance
Computing Workshops , {SBAC-PADW} 2023, Porto Alegre, Brazil, October
17-20, 2023},
pages = {9--15},
publisher = {{IEEE}},
year = {2023},
url = {https://doi.org/10.1109/SBAC-PADW60351.2023.00012},
doi = {10.1109/SBAC-PADW60351.2023.00012},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sbac-pad/PortoCOOBC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cys/CruzCGCCGBNOO22,
author = {Lucas Cruz and
Micaella Coelho and
Marcelo Galheigo and
Andr{\'{e}} Ramos Carneiro and
Diego Carvalho and
Luiz M. R. Gadelha Jr. and
Francieli Zanon Boito and
Philippe O. A. Navaux and
Carla Osthoff and
Kary A. C. S. Oca{\~{n}}a},
title = {Parallel Performance and {I/O} Profiling of {HPC} RNA-Seq Applications},
journal = {Computaci{\'{o}}n y Sistemas},
volume = {26},
number = {4},
year = {2022},
url = {https://cys.cic.ipn.mx/ojs/index.php/CyS/article/view/4437},
timestamp = {Mon, 16 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/cys/CruzCGCCGBNOO22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/carla/OcanaCCTGC0GBNO22,
author = {Kary A. C. S. Oca{\~{n}}a and
Lucas Cruz and
Micaella Coelho and
Rafael Terra and
Marcelo Galheigo and
Andre Ramos Carneiro and
Diego Carvalho and
Luiz M. R. Gadelha Jr. and
Francieli Zanon Boito and
Philippe O. A. Navaux and
Carla Osthoff},
editor = {Philippe O. A. Navaux and
Carlos J. Barrios and
Carla Osthoff and
Gin{\'{e}}s D. Guerrero},
title = {ParslRNA-Seq: An Efficient and Scalable RNAseq Analysis Workflow for
Studies of Differentiated Gene Expression},
booktitle = {High Performance Computing - 9th Latin American Conference, {CARLA}
2022, Porto Alegre, Brazil, September 26-30, 2022, Revised Selected
Papers},
series = {Communications in Computer and Information Science},
volume = {1660},
pages = {174--189},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-23821-5\_13},
doi = {10.1007/978-3-031-23821-5\_13},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/carla/OcanaCCTGC0GBNO22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cluster/GuedesJODO20,
author = {Thaylon Guedes and
Leonardo Ara{\'{u}}jo de Jesus and
Kary A. C. S. Oca{\~{n}}a and
L{\'{u}}cia M. A. Drummond and
Daniel de Oliveira},
title = {Provenance-based fault tolerance technique recommendation for cloud-based
scientific workflows: a practical approach},
journal = {Clust. Comput.},
volume = {23},
number = {1},
pages = {123--148},
year = {2020},
url = {https://doi.org/10.1007/s10586-019-02920-6},
doi = {10.1007/S10586-019-02920-6},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cluster/GuedesJODO20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fgcs/OcanaGOGPGOV20,
author = {Kary A. C. S. Oca{\~{n}}a and
Marcelo Galheigo and
Carla Osthoff and
Luiz M. R. Gadelha Jr. and
F{\'{a}}bio Porto and
Ant{\^{o}}nio Tadeu A. Gomes and
Daniel de Oliveira and
Ana Tereza Ribeiro de Vasconcelos},
title = {BioinfoPortal: {A} scientific gateway for integrating bioinformatics
applications on the Brazilian national high-performance computing
network},
journal = {Future Gener. Comput. Syst.},
volume = {107},
pages = {192--214},
year = {2020},
url = {https://doi.org/10.1016/j.future.2020.01.030},
doi = {10.1016/J.FUTURE.2020.01.030},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/fgcs/OcanaGOGPGOV20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fgcs/GuedesMFSOMBO20,
author = {Thaylon Guedes and
Lucas Bertelli Martins and
Maria Luiza Furtuozo Falci and
V{\'{\i}}tor Silva and
Kary A. C. S. Oca{\~{n}}a and
Marta Mattoso and
Marcos V. N. Bedo and
Daniel de Oliveira},
title = {Capturing and Analyzing Provenance from Spark-based Scientific Workflows
with SAMbA-RaP},
journal = {Future Gener. Comput. Syst.},
volume = {112},
pages = {658--669},
year = {2020},
url = {https://doi.org/10.1016/j.future.2020.05.031},
doi = {10.1016/J.FUTURE.2020.05.031},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/fgcs/GuedesMFSOMBO20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sbbd/TitoMSOB020,
author = {Lucas Tito and
Cristina Motinha and
Filipe Santiago and
Kary A. C. S. Oca{\~{n}}a and
Marcos V. N. Bedo and
Daniel de Oliveira},
title = {Xi-DL: um Sistema de Ger{\^{e}}ncia de Data Lake para Monitoramento
de Dados da Sa{\'{u}}de},
booktitle = {Proceedings of the 35th Brazilian Symposium on Databases, {SBBD} 2020,
Online, September 28 - October 1, 2020},
pages = {151--156},
publisher = {{SBC}},
year = {2020},
url = {https://doi.org/10.5753/sbbd.2020.13633},
doi = {10.5753/SBBD.2020.13633},
timestamp = {Wed, 25 Oct 2023 14:04:33 +0200},
biburl = {https://dblp.org/rec/conf/sbbd/TitoMSOB020.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fgcs/GuerineSRSOPO19,
author = {Marcos A. Guerine and
Murilo B. Stockinger and
Isabel Rosseti and
Luidi Gelabert Simonetti and
Kary A. C. S. Oca{\~{n}}a and
Alexandre Plastino and
Daniel de Oliveira},
title = {A provenance-based heuristic for preserving results confidentiality
in cloud-based scientific workflows},
journal = {Future Gener. Comput. Syst.},
volume = {97},
pages = {697--713},
year = {2019},
url = {https://doi.org/10.1016/j.future.2019.01.051},
doi = {10.1016/J.FUTURE.2019.01.051},
timestamp = {Fri, 18 Nov 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/fgcs/GuerineSRSOPO19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/carla/OcanaOCGCO019,
author = {Kary A. C. S. Oca{\~{n}}a and
Carla Osthoff and
Micaella Coelho and
Marcelo Galheigo and
Isabela Canuto and
Douglas E. M. de Oliveira and
Daniel de Oliveira},
editor = {Juan Luis Crespo{-}Mari{\~{n}}o and
Esteban Meneses{-}Rojas},
title = {Performance Evaluation of Parallel Inference of Large Phylogenetic
Trees in Santos Dumont Supercomputer: {A} Practical Approach},
booktitle = {High Performance Computing - 6th Latin American Conference, {CARLA}
2019, Turrialba, Costa Rica, September 25-27, 2019, Revised Selected
Papers},
series = {Communications in Computer and Information Science},
volume = {1087},
pages = {448--463},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-41005-6\_31},
doi = {10.1007/978-3-030-41005-6\_31},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/carla/OcanaOCGCO019.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ccgrid/GautherotGOGGOP19,
author = {Kary Ann del Carmen Oca{\~{n}}a Gautherot and
Marcelo Galheigo and
Carla Osthoff and
Luiz M. R. Gadelha Jr. and
Ant{\^{o}}nio Tadeu A. Gomes and
Daniel de Oliveira and
F{\'{a}}bio Porto and
Ana Tereza Ribeiro de Vasconcelos},
title = {Towards a Science Gateway for Bioinformatics: Experiences in the Brazilian
System of High Performance Computing},
booktitle = {19th {IEEE/ACM} International Symposium on Cluster, Cloud and Grid
Computing, {CCGRID} 2019, Larnaca, Cyprus, May 14-17, 2019},
pages = {638--647},
publisher = {{IEEE}},
year = {2019},
url = {https://doi.org/10.1109/CCGRID.2019.00082},
doi = {10.1109/CCGRID.2019.00082},
timestamp = {Fri, 04 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ccgrid/GautherotGOGGOP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/OcanaG019,
author = {Kary A. C. S. Oca{\~{n}}a and
Thaylon Guedes and
Daniel de Oliveira},
title = {ArrOW: Experiencing a Parallel Cloud-Based De Novo Assembler Workflow},
booktitle = {{IEEE} International Parallel and Distributed Processing Symposium
Workshops, {IPDPSW} 2019, Rio de Janeiro, Brazil, May 20-24, 2019},
pages = {185--190},
publisher = {{IEEE}},
year = {2019},
url = {https://doi.org/10.1109/IPDPSW.2019.00039},
doi = {10.1109/IPDPSW.2019.00039},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ipps/OcanaG019.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sbbd/MendesS0O19,
author = {Yan Mendes and
Victor Str{\"{o}}ele and
Daniel de Oliveira and
Kary A. C. S. Oca{\~{n}}a},
title = {An{\'{a}}lise Integrada de Grafos de Proveni{\^{e}}ncia Heterog{\^{e}}neos
por meio de uma Abordagem PolyStore},
booktitle = {Proceedings of the 34th Brazilian Symposium on Databases, {SBBD} 2019,
Fortaleza, CE, Brazil, October 7-10, 2019},
pages = {73--84},
publisher = {{SBC}},
year = {2019},
url = {https://doi.org/10.5753/sbbd.2019.8809},
doi = {10.5753/SBBD.2019.8809},
timestamp = {Wed, 25 Oct 2023 14:04:33 +0200},
biburl = {https://dblp.org/rec/conf/sbbd/MendesS0O19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sbbd/0001RCACHFOVM19,
author = {Daniel de Oliveira and
Eduardo Rodrigues Duarte Neto and
Serafim Costa and
Paulo Roberto Pessoa Amora and
Asley Caldas and
Marco Horta and
Ana Maria de Fillippis and
Kary A. C. S. Oca{\~{n}}a and
V{\^{a}}nia Maria P. Vidal and
Javam C. Machado},
title = {Um Estudo Comparativo de Mecanismos de Privacidade Diferencial sobre
um Dataset de Ocorr{\^{e}}ncias do {ZIKV} no Brasil},
booktitle = {Proceedings of the 34th Brazilian Symposium on Databases, {SBBD} 2019,
Fortaleza, CE, Brazil, October 7-10, 2019},
pages = {253--258},
publisher = {{SBC}},
year = {2019},
url = {https://doi.org/10.5753/sbbd.2019.8832},
doi = {10.5753/SBBD.2019.8832},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/sbbd/0001RCACHFOVM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/vldb/ValduriezMABCCG18,
author = {Patrick Valduriez and
Marta Mattoso and
Reza Akbarinia and
Heraldo Borges and
Jos{\'{e}} J. Camata and
Alvaro L. G. A. Coutinho and
Daniel Gaspar and
Noel Moreno Lemus and
Ji Liu and
Hermano Lustosa and
Florent Masseglia and
Fabr{\'{\i}}cio Nogueira da Silva and
V{\'{\i}}tor Silva and
Renan Souza and
Kary A. C. S. Oca{\~{n}}a and
Eduardo S. Ogasawara and
Daniel de Oliveira and
Esther Pacitti and
F{\'{a}}bio Porto and
Dennis E. Shasha},
editor = {Artur Ziviani and
Carmem S. Hara and
Eduardo S. Ogasawara and
Jos{\'{e}} Ant{\^{o}}nio Fernandes de Mac{\^{e}}do and
Patrick Valduriez},
title = {Scientific Data Analysis Using Data-Intensive Scalable Computing:
The SciDISC Project},
booktitle = {Proceedings of the Latin America Data Science Workshop co-located
with 44th International Conference on Very Large Data Bases {(VLDB}
2018), Rio de Janeiro, Brazil, Aug 27, 2018},
series = {{CEUR} Workshop Proceedings},
volume = {2170},
pages = {1--8},
publisher = {CEUR-WS.org},
year = {2018},
url = {https://ceur-ws.org/Vol-2170/paper1.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:19 +0100},
biburl = {https://dblp.org/rec/conf/vldb/ValduriezMABCCG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1801-03915,
author = {Maria Luiza Mondelli and
Thiago Magalh{\~{a}}es and
Guilherme Loss and
Michael Wilde and
Ian T. Foster and
Marta Mattoso and
Daniel S. Katz and
Helio J. C. Barbosa and
Ana Tereza Ribeiro de Vasconcelos and
Kary A. C. S. Oca{\~{n}}a and
Luiz M. R. Gadelha Jr.},
title = {BioWorkbench: {A} High-Performance Framework for Managing and Analyzing
Bioinformatics Experiments},
journal = {CoRR},
volume = {abs/1801.03915},
year = {2018},
url = {http://arxiv.org/abs/1801.03915},
eprinttype = {arXiv},
eprint = {1801.03915},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1801-03915.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fgcs/MarinhoOOSOMBM17,
author = {Anderson Marinho and
Daniel de Oliveira and
Eduardo S. Ogasawara and
V{\'{\i}}tor Silva and
Kary A. C. S. Oca{\~{n}}a and
Leonardo Murta and
Vanessa Braganholo and
Marta Mattoso},
title = {Deriving scientific workflows from algebraic experiment lines: {A}
practical approach},
journal = {Future Gener. Comput. Syst.},
volume = {68},
pages = {111--127},
year = {2017},
url = {https://doi.org/10.1016/j.future.2016.08.016},
doi = {10.1016/J.FUTURE.2016.08.016},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/fgcs/MarinhoOOSOMBM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jidm/OliveiraOOB17,
author = {Wellington Moreira de Oliveira and
Kary A. C. S. Oca{\~{n}}a and
Daniel de Oliveira and
Vanessa Braganholo},
title = {Querying Provenance along with External Domain Data Using Prolog},
journal = {J. Inf. Data Manag.},
volume = {8},
number = {1},
pages = {3--18},
year = {2017},
url = {https://sol.sbc.org.br/journals/index.php/jidm/article/view/1603},
timestamp = {Tue, 30 Nov 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jidm/OliveiraOOB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/toit/NevesOOBM17,
author = {Vitor C. Neves and
Daniel de Oliveira and
Kary A. C. S. Oca{\~{n}}a and
Vanessa Braganholo and
Leonardo Murta},
title = {Managing Provenance of Implicit Data Flows in Scientific Experiments},
journal = {{ACM} Trans. Internet Techn.},
volume = {17},
number = {4},
pages = {36:1--36:22},
year = {2017},
url = {https://doi.org/10.1145/3053372},
doi = {10.1145/3053372},
timestamp = {Wed, 12 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/toit/NevesOOBM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cibse/RomeiroOKO17,
author = {Augusto Romeiro and
Kary A. C. S. Oca{\~{n}}a and
Marcos Kalinowski and
Daniel de Oliveira},
editor = {Oscar Pastor and
Renata S. S. Guizzardi and
Gladys Noem{\'{\i}} Kaplan and
Jes{\'{u}}s Garc{\'{\i}}a Molina and
Ana Moreira and
Isabel Sofia Brito and
Jose Luis de la Vara and
Marcela Genero and
Fabio Q. B. da Silva and
Luca Cernuzzi},
title = {SciAgile: Aplica{\c{c}}{\~{a}}o de Metodologias {\'{A}}geis em
Experimentos Cient{\'{\i}}ficos Baseados em Simula{\c{c}}{\~{a}}o},
booktitle = {Proceedings of the {XX} Iberoamerican Conference on Software Engineering,
Buenos Aires, Argentina, May 22-23, 2017},
pages = {511--524},
publisher = {Curran Associates},
year = {2017},
timestamp = {Mon, 18 Jan 2021 08:56:42 +0100},
biburl = {https://dblp.org/rec/conf/cibse/RomeiroOKO17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/RossetiOO17,
author = {Isabel Rosseti and
Kary A. C. S. Oca{\~{n}}a and
Daniel de Oliveira},
editor = {Johan Montagnat and
Ian J. Taylor and
Sandra Gesing and
Rizos Sakellariou},
title = {Towards preserving results confidentiality in cloud-based scientific
workflows},
booktitle = {Proceedings of the 12th Workshop on Workflows in Support of Large-Scale
Science, WORKS@SC 2017, Denver, CO, USA, November 12 - 17, 2017},
pages = {6:1--6:9},
publisher = {{ACM}},
year = {2017},
url = {https://doi.org/10.1145/3150994.3151002},
doi = {10.1145/3150994.3151002},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/sc/RossetiOO17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/ccn/CoutinhoFO0D17,
author = {Rafaelli de C. Coutinho and
Yuri Frota and
Kary A. C. S. Oca{\~{n}}a and
Daniel de Oliveira and
L{\'{u}}cia M. A. Drummond},
editor = {Nick Antonopoulos and
Lee Gillam},
title = {Mirror Mirror on the Wall, How Do {I} Dimension My Cloud After All?},
booktitle = {Cloud Computing - Principles, Systems and Applications, Second Edition},
series = {Computer Communications and Networks},
pages = {27--58},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-54645-2\_2},
doi = {10.1007/978-3-319-54645-2\_2},
timestamp = {Tue, 04 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/series/ccn/CoutinhoFO0D17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/grid/CoutinhoFO0D16,
author = {Rafaelli de C. Coutinho and
Yuri Frota and
Kary A. C. S. Oca{\~{n}}a and
Daniel de Oliveira and
L{\'{u}}cia M. A. Drummond},
title = {A Dynamic Cloud Dimensioning Approach for Parallel Scientific Workflows:
a Case Study in the Comparative Genomics Domain},
journal = {J. Grid Comput.},
volume = {14},
number = {3},
pages = {443--461},
year = {2016},
url = {https://doi.org/10.1007/s10723-016-9367-x},
doi = {10.1007/S10723-016-9367-X},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/grid/CoutinhoFO0D16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipaw/OliveiraMOOB16,
author = {Wellington Moreira de Oliveira and
Paolo Missier and
Kary A. C. S. Oca{\~{n}}a and
Daniel de Oliveira and
Vanessa Braganholo},
editor = {Marta Mattoso and
Boris Glavic},
title = {Analyzing Provenance Across Heterogeneous Provenance Graphs},
booktitle = {Provenance and Annotation of Data and Processes - 6th International
Provenance and Annotation Workshop, {IPAW} 2016, McLean, VA, USA,
June 7-8, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9672},
pages = {57--70},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-40593-3\_5},
doi = {10.1007/978-3-319-40593-3\_5},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ipaw/OliveiraMOOB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sbbd/TallaridaOPB016,
author = {Gustavo Tallarida and
Kary A. C. S. Oca{\~{n}}a and
Aline Paes and
Vanessa Braganholo and
Daniel de Oliveira},
editor = {Javam C. Machado},
title = {Ger{\^{e}}ncia de Incerteza em Bancos de Dados de Proveni{\^{e}}ncia
de Workflows de Bioinform{\'{a}}tica},
booktitle = {31{\textordmasculine} Simp{\'{o}}sio Brasileiro de Banco de Dados,
{SBBD} 2016, Salvador, Bahia, Brasil, October 4-7, 2016},
pages = {181--186},
publisher = {{SBC}},
year = {2016},
url = {http://sbbd2016.fpc.ufba.br/sbbd2016/sbbd/sbbd\_s014.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sbbd/TallaridaOPB016.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sbsi/RamosOO16,
author = {Leonardo S. Ramos and
Kary A. C. S. Oca{\~{n}}a and
Daniel Oliveira},
editor = {Frank Siqueira and
Patricia Vilain and
Claudia Cappelli and
Raul Sidnei Wazlawick},
title = {Um Sistema de Informa{\c{c}}{\~{a}}o para Ger{\^{e}}ncia de Projetos
Cient{\'{\i}}ficos baseados em Simula{\c{c}}{\~{o}}es Computacionais
[An {IS} for Managing Scientific Projects]},
booktitle = {Proceedings of the {XII} Brazilian Symposium on Information Systems
on Brazilian Symposium on Information Systems: Information Systems
in the Cloud Computing Era, {SBSI} 2016, Florian{\'{o}}polis,
Brazil, May 17-20, 2016},
pages = {216--223},
publisher = {{ACM}},
year = {2016},
url = {https://doi.org/10.5753/sbsi.2016.5965},
doi = {10.5753/SBSI.2016.5965},
timestamp = {Wed, 04 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/sbsi/RamosOO16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fgcs/MattosoDOOCHSO15,
author = {Marta Mattoso and
Jonas Dias and
Kary A. C. S. Oca{\~{n}}a and
Eduardo S. Ogasawara and
Flavio Costa and
Felipe Horta and
V{\'{\i}}tor Silva and
Daniel de Oliveira},
title = {Dynamic steering of {HPC} scientific workflows: {A} survey},
journal = {Future Gener. Comput. Syst.},
volume = {46},
pages = {100--113},
year = {2015},
url = {https://doi.org/10.1016/j.future.2014.11.017},
doi = {10.1016/J.FUTURE.2014.11.017},
timestamp = {Mon, 21 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/fgcs/MattosoDOOCHSO15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eScience/OcanaSOM15,
author = {Kary A. C. S. Oca{\~{n}}a and
V{\'{\i}}tor Silva and
Daniel de Oliveira and
Marta Mattoso},
title = {Data Analytics in Bioinformatics: Data Science in Practice for Genomics
Analysis Workflows},
booktitle = {11th {IEEE} International Conference on e-Science, e-Science 2015,
Munich, Germany, August 31 - September 4, 2015},
pages = {322--331},
publisher = {{IEEE} Computer Society},
year = {2015},
url = {https://doi.org/10.1109/eScience.2015.50},
doi = {10.1109/ESCIENCE.2015.50},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/eScience/OcanaSOM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sbbd/CastroSSOOM15,
author = {Rachel Castro and
Renan Souza and
V{\'{\i}}tor Silva and
Kary A. C. S. Oca{\~{n}}a and
Daniel de Oliveira and
Marta Mattoso},
editor = {Vanessa Braganholo},
title = {Uma Abordagem para Publica{\c{c}}{\~{a}}o de Dados de Proveni{\^{e}}ncia
de Workflows Cient{\'{\i}}ficos na Web Sem{\^{a}}ntica},
booktitle = {{XXX} Simp{\'{o}}sio Brasileiro de Banco de Dados - Short Papers,
Petr{\'{o}}polis, Rio de Janeiro, Brasil, October 13-16, 2015},
pages = {111--116},
publisher = {{SBC}},
year = {2015},
timestamp = {Mon, 07 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sbbd/CastroSSOOM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cluster/CoutinhoDFOO14,
author = {Rafaelli de C. Coutinho and
L{\'{u}}cia M. A. Drummond and
Yuri Frota and
Daniel de Oliveira and
Kary A. C. S. Oca{\~{n}}a},
title = {Evaluating Grasp-based cloud dimensioning for comparative genomics:
{A} practical approach},
booktitle = {2014 {IEEE} International Conference on Cluster Computing, {CLUSTER}
2014, Madrid, Spain, September 22-26, 2014},
pages = {371--379},
publisher = {{IEEE} Computer Society},
year = {2014},
url = {https://doi.org/10.1109/CLUSTER.2014.6968789},
doi = {10.1109/CLUSTER.2014.6968789},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cluster/CoutinhoDFOO14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icsoc/OcanaOSBM14,
author = {Kary A. C. S. Oca{\~{n}}a and
Daniel de Oliveira and
V{\'{\i}}tor Silva and
Silvia Benza and
Marta Mattoso},
editor = {Farouk Toumani and
Barbara Pernici and
Daniela Grigori and
Djamal Benslimane and
Jan Mendling and
Nejib Ben Hadj{-}Alouane and
M. Brian Blake and
Olivier Perrin and
Iman Saleh and
Sami Bhiri},
title = {Exploiting the Parallel Execution of Homology Workflow Alternatives
in {HPC} Compute Clouds},
booktitle = {Service-Oriented Computing - {ICSOC} 2014 Workshops - WESOA; SeMaPS,
RMSOC, KASA, ISC, FOR-MOVES, {CCSA} and Satellite Events, Paris, France,
November 3-6, 2014, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {8954},
pages = {336--350},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-22885-3\_29},
doi = {10.1007/978-3-319-22885-3\_29},
timestamp = {Mon, 21 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icsoc/OcanaOSBM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipaw/CostaSOOM14,
author = {Flavio Costa and
V{\'{\i}}tor Silva and
Daniel de Oliveira and
Kary A. C. S. Oca{\~{n}}a and
Marta Mattoso},
editor = {Bertram Lud{\"{a}}scher and
Beth Plale},
title = {Towards Supporting Provenance Gathering and Querying in Different
Database Approaches},
booktitle = {Provenance and Annotation of Data and Processes - 5th International
Provenance and Annotation Workshop, {IPAW} 2014, Cologne, Germany,
June 9-13, 2014. Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {8628},
pages = {254--257},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-16462-5\_26},
doi = {10.1007/978-3-319-16462-5\_26},
timestamp = {Mon, 21 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ipaw/CostaSOOM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/OcanaBODM14,
author = {Kary A. C. S. Oca{\~{n}}a and
Silvia Benza and
Daniel de Oliveira and
Jonas Dias and
Marta Mattoso},
title = {Exploring Large Scale Receptor-Ligand Pairs in Molecular Docking Workflows
in {HPC} Clouds},
booktitle = {2014 {IEEE} International Parallel {\&} Distributed Processing
Symposium Workshops, Phoenix, AZ, USA, May 19-23, 2014},
pages = {536--545},
publisher = {{IEEE} Computer Society},
year = {2014},
url = {https://doi.org/10.1109/IPDPSW.2014.65},
doi = {10.1109/IPDPSW.2014.65},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ipps/OcanaBODM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sbbd/OliveiraNOMOB14,
author = {Wellington Moreira de Oliveira and
Vitor C. Neves and
Kary A. C. S. Oca{\~{n}}a and
Leonardo Murta and
Daniel de Oliveira and
Vanessa Braganholo},
editor = {Mirella M. Moro},
title = {Captura e Consulta a Dados de Proveni{\^{e}}ncia Retrospectiva Impl{\'{\i}}cita
Intra-Atividade},
booktitle = {{XXIX} Simp{\'{o}}sio Brasileiro de Banco de Dados, {SBBD} 2014,
Curitiba, Paran{\'{a}}, Brasil, October 6-9, 2014},
pages = {37--46},
publisher = {{SBC}},
year = {2014},
url = {http://www.lbd.dcc.ufmg.br/colecoes/sbbd/2014/003.pdf},
timestamp = {Mon, 07 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sbbd/OliveiraNOMOB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sbbd/OliveiraCSOM14,
author = {Daniel de Oliveira and
Flavio Costa and
V{\'{\i}}tor Silva and
Kary A. C. S. Oca{\~{n}}a and
Marta Mattoso},
editor = {Mirella M. Moro},
title = {Debugging Scientific Workflows with Provenance: Achievements and Lessons
Learned},
booktitle = {{XXIX} Simp{\'{o}}sio Brasileiro de Banco de Dados, {SBBD} 2014,
Curitiba, Paran{\'{a}}, Brasil, October 6-9, 2014},
pages = {67--76},
publisher = {{SBC}},
year = {2014},
url = {http://www.lbd.dcc.ufmg.br/colecoes/sbbd/2014/006.pdf},
timestamp = {Mon, 07 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sbbd/OliveiraCSOM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fgcs/OliveiraOODGBM13,
author = {Daniel de Oliveira and
Kary A. C. S. Oca{\~{n}}a and
Eduardo S. Ogasawara and
Jonas Dias and
Jo{\~{a}}o Carlos de A. R. Gon{\c{c}}alves and
Fernanda Ara{\'{u}}jo Bai{\~{a}}o and
Marta Mattoso},
title = {Performance evaluation of parallel strategies in public clouds: {A}
study with phylogenomic workflows},
journal = {Future Gener. Comput. Syst.},
volume = {29},
number = {7},
pages = {1816--1825},
year = {2013},
url = {https://doi.org/10.1016/j.future.2012.12.019},
doi = {10.1016/J.FUTURE.2012.12.019},
timestamp = {Thu, 15 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/fgcs/OliveiraOODGBM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fgcs/OcanaODOM13,
author = {Kary A. C. S. Oca{\~{n}}a and
Daniel de Oliveira and
Jonas Dias and
Eduardo S. Ogasawara and
Marta Mattoso},
title = {Designing a parallel cloud based comparative genomics workflow to
improve phylogenetic analyses},
journal = {Future Gener. Comput. Syst.},
volume = {29},
number = {8},
pages = {2205--2219},
year = {2013},
url = {https://doi.org/10.1016/j.future.2013.04.005},
doi = {10.1016/J.FUTURE.2013.04.005},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/fgcs/OcanaODOM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jidm/GoncalvesOOODM13,
author = {Jo{\~{a}}o Carlos de A. R. Gon{\c{c}}alves and
Daniel de Oliveira and
Kary A. C. S. Oca{\~{n}}a and
Eduardo S. Ogasawara and
Jonas Dias and
Marta Mattoso},
title = {Performance Analysis of Data Filtering in Scientific Workflows},
journal = {J. Inf. Data Manag.},
volume = {4},
number = {1},
pages = {17--26},
year = {2013},
url = {https://sol.sbc.org.br/journals/index.php/jidm/article/view/1466},
timestamp = {Tue, 30 Nov 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jidm/GoncalvesOOODM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/edbt/CostaSOOODM13,
author = {Flavio Costa and
V{\'{\i}}tor Silva and
Daniel de Oliveira and
Kary A. C. S. Oca{\~{n}}a and
Eduardo S. Ogasawara and
Jonas Dias and
Marta Mattoso},
editor = {Giovanna Guerrini},
title = {Capturing and querying workflow runtime provenance with {PROV:} a
practical approach},
booktitle = {Joint 2013 {EDBT/ICDT} Conferences, {EDBT/ICDT} '13, Genoa, Italy,
March 22, 2013, Workshop Proceedings},
pages = {282--289},
publisher = {{ACM}},
year = {2013},
url = {https://doi.org/10.1145/2457317.2457365},
doi = {10.1145/2457317.2457365},
timestamp = {Mon, 21 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/edbt/CostaSOOODM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/edbt/HortaSCOOODM13,
author = {Felipe Horta and
V{\'{\i}}tor Silva and
Flavio Costa and
Daniel de Oliveira and
Kary A. C. S. Oca{\~{n}}a and
Eduardo S. Ogasawara and
Jonas Dias and
Marta Mattoso},
editor = {Giovanna Guerrini},
title = {Provenance traces from Chiron parallel workflow engine},
booktitle = {Joint 2013 {EDBT/ICDT} Conferences, {EDBT/ICDT} '13, Genoa, Italy,
March 22, 2013, Workshop Proceedings},
pages = {337--338},
publisher = {{ACM}},
year = {2013},
url = {https://doi.org/10.1145/2457317.2457379},
doi = {10.1145/2457317.2457379},
timestamp = {Mon, 21 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/edbt/HortaSCOOODM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hpdc/OliveiraVOOM13,
author = {Daniel de Oliveira and
Vitor Viana and
Eduardo S. Ogasawara and
Kary A. C. S. Oca{\~{n}}a and
Marta Mattoso},
editor = {Kyle Chard},
title = {Dimensioning the virtual cluster for parallel scientific workflows
in clouds},
booktitle = {ScienceCloud'13, Proceedings of the 4th {ACM} {HPDC} Workshop on Scientific
Cloud Computing, New York, NY, USA, June 17, 2013},
pages = {5--12},
publisher = {{ACM}},
year = {2013},
url = {https://doi.org/10.1145/2465848.2465852},
doi = {10.1145/2465848.2465852},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/hpdc/OliveiraVOOM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icsoc/PintasOOOM13,
author = {Julliano Trindade Pintas and
Daniel de Oliveira and
Kary A. C. S. Oca{\~{n}}a and
Eduardo S. Ogasawara and
Marta Mattoso},
editor = {Alessio Lomuscio and
Surya Nepal and
Fabio Patrizi and
Boualem Benatallah and
Ivona Brandic},
title = {SciLightning: {A} Cloud Provenance-Based Event Notification for Parallel
Workflows},
booktitle = {Service-Oriented Computing - {ICSOC} 2013 Workshops - CCSA, CSB, PASCEB,
SWESE, WESOA, and PhD Symposium, Berlin, Germany, December 2-5, 2013.
Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {8377},
pages = {352--365},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-319-06859-6\_31},
doi = {10.1007/978-3-319-06859-6\_31},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icsoc/PintasOOOM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sigmod/MattosoOHDOS0CA13,
author = {Marta Mattoso and
Kary A. C. S. Oca{\~{n}}a and
Felipe Horta and
Jonas Dias and
Eduardo S. Ogasawara and
V{\'{\i}}tor Silva and
Daniel de Oliveira and
Flavio Costa and
Igor Ara{\'{u}}jo},
editor = {Jan Hidders and
Paolo Missier and
Jacek Sroka},
title = {User-steering of {HPC} workflows: state-of-the-art and future directions},
booktitle = {Proceedings of the 2nd {ACM} {SIGMOD} Workshop on Scalable Workflow
Execution Engines and Technologies, SWEET@SIGMOD 2013, New York, New
York, USA, June 23, 2013},
pages = {4:1--4:6},
publisher = {{ACM}},
year = {2013},
url = {https://doi.org/10.1145/2499896.2499900},
doi = {10.1145/2499896.2499900},
timestamp = {Mon, 21 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sigmod/MattosoOHDOS0CA13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ucc/SantosDOOOM13,
author = {Igor Dos Santos and
Jonas Dias and
Daniel de Oliveira and
Eduardo S. Ogasawara and
Kary A. C. S. Oca{\~{n}}a and
Marta Mattoso},
title = {Runtime Dynamic Structural Changes of Scientific Workflows in Clouds},
booktitle = {{IEEE/ACM} 6th International Conference on Utility and Cloud Computing,
{UCC} 2013, Dresden, Germany, December 9-12, 2013},
pages = {417--422},
publisher = {{IEEE} Computer Society},
year = {2013},
url = {https://doi.org/10.1109/UCC.2013.83},
doi = {10.1109/UCC.2013.83},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ucc/SantosDOOOM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/concurrency/OliveiraOOBM12,
author = {Daniel de Oliveira and
Eduardo S. Ogasawara and
Kary A. C. S. Oca{\~{n}}a and
Fernanda Ara{\'{u}}jo Bai{\~{a}}o and
Marta Mattoso},
title = {An adaptive parallel execution strategy for cloud-based scientific
workflows},
journal = {Concurr. Comput. Pract. Exp.},
volume = {24},
number = {13},
pages = {1531--1550},
year = {2012},
url = {https://doi.org/10.1002/cpe.1880},
doi = {10.1002/CPE.1880},
timestamp = {Thu, 15 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/concurrency/OliveiraOOBM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/grid/OliveiraOBM12,
author = {Daniel de Oliveira and
Kary A. C. S. Oca{\~{n}}a and
Fernanda Ara{\'{u}}jo Bai{\~{a}}o and
Marta Mattoso},
title = {A Provenance-based Adaptive Scheduling Heuristic for Parallel Scientific
Workflows in Clouds},
journal = {J. Grid Comput.},
volume = {10},
number = {3},
pages = {521--552},
year = {2012},
url = {https://doi.org/10.1007/s10723-012-9227-2},
doi = {10.1007/S10723-012-9227-2},
timestamp = {Thu, 15 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/grid/OliveiraOBM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eScience/OcanaODOM12,
author = {Kary A. C. S. Oca{\~{n}}a and
Daniel de Oliveira and
Jonas Dias and
Eduardo S. Ogasawara and
Marta Mattoso},
title = {Discovering drug targets for neglected diseases using a pharmacophylogenomic
cloud workflow},
booktitle = {8th {IEEE} International Conference on E-Science, e-Science 2012,
Chicago, IL, USA, October 8-12, 2012},
pages = {1--8},
publisher = {{IEEE} Computer Society},
year = {2012},
url = {https://doi.org/10.1109/eScience.2012.6404431},
doi = {10.1109/ESCIENCE.2012.6404431},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/eScience/OcanaODOM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipaw/GoncalvesOOOM12,
author = {Jo{\~{a}}o Carlos de A. R. Gon{\c{c}}alves and
Daniel de Oliveira and
Kary A. C. S. Oca{\~{n}}a and
Eduardo S. Ogasawara and
Marta Mattoso},
editor = {Paul Groth and
James Frew},
title = {Using Domain-Specific Data to Enhance Scientific Workflow Steering
Queries},
booktitle = {Provenance and Annotation of Data and Processes - 4th International
Provenance and Annotation Workshop, {IPAW} 2012, Santa Barbara, CA,
USA, June 19-21, 2012, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {7525},
pages = {152--167},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-34222-6\_12},
doi = {10.1007/978-3-642-34222-6\_12},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ipaw/GoncalvesOOOM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipaw/CostaOOOM12,
author = {Flavio Costa and
Daniel de Oliveira and
Kary A. C. S. Oca{\~{n}}a and
Eduardo S. Ogasawara and
Marta Mattoso},
editor = {Paul Groth and
James Frew},
title = {Enabling Re-executions of Parallel Scientific Workflows Using Runtime
Provenance Data},
booktitle = {Provenance and Annotation of Data and Processes - 4th International
Provenance and Annotation Workshop, {IPAW} 2012, Santa Barbara, CA,
USA, June 19-21, 2012, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {7525},
pages = {229--232},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-34222-6\_22},
doi = {10.1007/978-3-642-34222-6\_22},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ipaw/CostaOOOM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sbbd/GoncalvesOOODM12,
author = {Jo{\~{a}}o Carlos de A. R. Gon{\c{c}}alves and
Daniel de Oliveira and
Kary A. C. S. Oca{\~{n}}a and
Eduardo S. Ogasawara and
Jonas Dias and
Marta Mattoso},
editor = {Renata de Matos Galante},
title = {Using Provenance Analyzers to Improve the Performance of Scientific
Workflows in Cloud Environments},
booktitle = {{XXVII} Simp{\'{o}}sio Brasileiro de Banco de Dados - Short Papers,
S{\~{a}}o Paulo, S{\~{a}}o Paulo, Brasil, October 15-18, 2012},
pages = {1--8},
publisher = {{SBC}},
year = {2012},
url = {http://www.lbd.dcc.ufmg.br/colecoes/sbbd/2012/001.pdf},
timestamp = {Mon, 07 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sbbd/GoncalvesOOODM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/CostaOOODM12,
author = {Flavio Costa and
Daniel de Oliveira and
Kary A. C. S. Oca{\~{n}}a and
Eduardo S. Ogasawara and
Jonas Dias and
Marta Mattoso},
title = {Handling Failures in Parallel Scientific Workflows Using Clouds},
booktitle = {2012 {SC} Companion: High Performance Computing, Networking Storage
and Analysis, Salt Lake City, UT, USA, November 10-16, 2012},
pages = {129--139},
publisher = {{IEEE} Computer Society},
year = {2012},
url = {https://doi.org/10.1109/SC.Companion.2012.28},
doi = {10.1109/SC.COMPANION.2012.28},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sc/CostaOOODM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/HortaDOOOM12,
author = {Felipe Horta and
Jonas Dias and
Kary A. C. S. Oca{\~{n}}a and
Daniel de Oliveira and
Eduardo S. Ogasawara and
Marta Mattoso},
title = {Abstract: Using Provenance to Visualize Data from Large-Scale Experiments},
booktitle = {2012 {SC} Companion: High Performance Computing, Networking Storage
and Analysis, Salt Lake City, UT, USA, November 10-16, 2012},
pages = {1418--1419},
publisher = {{IEEE} Computer Society},
year = {2012},
url = {https://doi.org/10.1109/SC.Companion.2012.228},
doi = {10.1109/SC.COMPANION.2012.228},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sc/HortaDOOOM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wob/OcanaOHDOM12,
author = {Kary A. C. S. Oca{\~{n}}a and
Daniel de Oliveira and
Felipe Horta and
Jonas Dias and
Eduardo S. Ogasawara and
Marta Mattoso},
editor = {Marc{\'{\i}}lio Carlos Pereira de Souto and
Maricel G. Kann},
title = {Exploring Molecular Evolution Reconstruction Using a Parallel Cloud
Based Scientific Workflow},
booktitle = {Advances in Bioinformatics and Computational Biology - 7th Brazilian
Symposium on Bioinformatics, {BSB} 2012, Campo Grande, Brazil, August
15-17, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7409},
pages = {179--191},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-31927-3\_16},
doi = {10.1007/978-3-642-31927-3\_16},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wob/OcanaOHDOM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/IEEEcloud/OliveiraOODBM11,
author = {Daniel de Oliveira and
Kary A. C. S. Oca{\~{n}}a and
Eduardo S. Ogasawara and
Jonas Dias and
Fernanda Ara{\'{u}}jo Bai{\~{a}}o and
Marta Mattoso},
editor = {Ling Liu and
Manish Parashar},
title = {A Performance Evaluation of X-Ray Crystallography Scientific Workflow
Using SciCumulus},
booktitle = {{IEEE} International Conference on Cloud Computing, {CLOUD} 2011,
Washington, DC, USA, 4-9 July, 2011},
pages = {708--715},
publisher = {{IEEE} Computer Society},
year = {2011},
url = {https://doi.org/10.1109/CLOUD.2011.99},
doi = {10.1109/CLOUD.2011.99},
timestamp = {Thu, 15 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/IEEEcloud/OliveiraOODBM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eScience/OcanaODOM11,
author = {Kary A. C. S. Oca{\~{n}}a and
Daniel de Oliveira and
Jonas Dias and
Eduardo S. Ogasawara and
Marta Mattoso},
title = {Optimizing Phylogenetic Analysis Using SciHmm Cloud-based Scientific
Workflow},
booktitle = {{IEEE} 7th International Conference on E-Science, e-Science 2011,
Stockholm, Sweden, December 5-8, 2011},
pages = {62--69},
publisher = {{IEEE} Computer Society},
year = {2011},
url = {https://doi.org/10.1109/eScience.2011.17},
doi = {10.1109/ESCIENCE.2011.17},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/eScience/OcanaODOM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wob/OcanaOODLM11,
author = {Kary A. C. S. Oca{\~{n}}a and
Daniel de Oliveira and
Eduardo S. Ogasawara and
Alberto M. R. D{\'{a}}vila and
Alexandre A. B. Lima and
Marta Mattoso},
editor = {Osmar Norberto de Souza and
Guilherme P. Telles and
Mathew J. Palakal},
title = {SciPhy: {A} Cloud-Based Workflow for Phylogenetic Analysis of Drug
Targets in Protozoan Genomes},
booktitle = {Advances in Bioinformatics and Computational Biology - 6th Brazilian
Symposium on Bioinformatics, {BSB} 2011, Brasilia, Brazil, August
10-12, 2011. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6832},
pages = {66--70},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-22825-4\_9},
doi = {10.1007/978-3-642-22825-4\_9},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wob/OcanaOODLM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/DavilaMWTCLMSOTCJCSGRRSJPGKGCMCM08,
author = {Alberto M. R. D{\'{a}}vila and
Pablo N. Mendes and
Glauber Wagner and
Diogo A. Tschoeke and
Rafael R. C. Cuadrat and
Felipe Liberman and
Luciana Matos and
Thiago S. Satake and
Kary A. C. S. Oca{\~{n}}a and
Omar Triana and
S{\'{e}}rgio Manuel Serra da Cruz and
Henrique C. L. Juc{\'{a}} and
Juliano C. Cury and
Fabr{\'{\i}}cio Nogueira da Silva and
Guilherme A. Geronimo and
Margarita Ruiz and
Eduardo Ruback and
Floriano P. Silva Jr. and
Christian M. Probst and
Edmundo C. Grisard and
Marco A. Krieger and
Samuel Goldenberg and
Maria Cl{\'{a}}udia Reis Cavalcanti and
Milton O. Moraes and
Maria Luiza Machado Campos and
Marta Mattoso},
title = {ProtozoaDB: dynamic visualization and exploration of protozoan genomes},
journal = {Nucleic Acids Res.},
volume = {36},
number = {Database-Issue},
pages = {547--552},
year = {2008},
url = {https://doi.org/10.1093/nar/gkm820},
doi = {10.1093/NAR/GKM820},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/DavilaMWTCLMSOTCJCSGRRSJPGKGCMCM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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