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BibTeX records: Sonja J. Prohaska

Name: dblp XML data dump
Creator: Schloss Dagstuhl - Leibniz Center for Informatics
Published: 1993
License: https://creativecommons.org/publicdomain/zero/1.0/
Keywords: dblp, XML, computer science, scholarly publications, metadata

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@article{DBLP:journals/almob/IndrischekWSP16,
  author       = {Henrike Indrischek and
                  Nicolas Wieseke and
                  Peter F. Stadler and
                  Sonja J. Prohaska},
  title        = {The paralog-to-contig assignment problem: high quality gene models
                  from fragmented assemblies},
  journal      = {Algorithms Mol. Biol.},
  volume       = {11},
  pages        = {1},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13015-016-0063-y},
  doi          = {10.1186/S13015-016-0063-Y},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/almob/IndrischekWSP16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/tib/KrakauerMPS16,
  author       = {David C. Krakauer and
                  Lydia M{\"{u}}ller and
                  Sonja J. Prohaska and
                  Peter F. Stadler},
  title        = {Design specifications for cellular regulation},
  journal      = {Theory Biosci.},
  volume       = {135},
  number       = {4},
  pages        = {231--240},
  year         = {2016},
  url          = {https://doi.org/10.1007/s12064-016-0239-5},
  doi          = {10.1007/S12064-016-0239-5},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tib/KrakauerMPS16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bmcbi/SiederdissenPS15,
  author       = {Christian H{\"{o}}ner zu Siederdissen and
                  Sonja J. Prohaska and
                  Peter F. Stadler},
  title        = {Algebraic Dynamic Programming over general data structures},
  journal      = {{BMC} Bioinform.},
  volume       = {16},
  number       = {{S19}},
  pages        = {S2},
  year         = {2015},
  url          = {https://doi.org/10.1186/1471-2105-16-s19-s2},
  doi          = {10.1186/1471-2105-16-S19-S2},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/SiederdissenPS15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/tib/LaubichlerSPN15,
  author       = {Manfred D. Laubichler and
                  Peter F. Stadler and
                  Sonja J. Prohaska and
                  Katja Nowick},
  title        = {The relativity of biological function},
  journal      = {Theory Biosci.},
  volume       = {134},
  number       = {3-4},
  pages        = {143--147},
  year         = {2015},
  url          = {https://doi.org/10.1007/s12064-015-0215-5},
  doi          = {10.1007/S12064-015-0215-5},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/tib/LaubichlerSPN15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/almob/MisofMRKPS14,
  author       = {Bernhard Misof and
                  Karen Meusemann and
                  Bj{\"{o}}rn Marcus von Reumont and
                  Patrick K{\"{u}}ck and
                  Sonja J. Prohaska and
                  Peter F. Stadler},
  title        = {A priori assessment of data quality in molecular phylogenetics},
  journal      = {Algorithms Mol. Biol.},
  volume       = {9},
  pages        = {22},
  year         = {2014},
  url          = {https://doi.org/10.1186/s13015-014-0022-4},
  doi          = {10.1186/S13015-014-0022-4},
  timestamp    = {Fri, 13 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/almob/MisofMRKPS14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/iwbbio/SiederdissenBAW14,
  author       = {Christian H{\"{o}}ner zu Siederdissen and
                  Sarah Berkemer and
                  Fabian Amman and
                  Axel Wintsche and
                  Sebastian Will and
                  Sonja J. Prohaska and
                  Peter F. Stadler},
  editor       = {Ignacio Rojas and
                  Francisco M. Ortu{\~{n}}o Guzman},
  title        = {Comparative Detection of Processed Small RNAs in Archaea},
  booktitle    = {International Work-Conference on Bioinformatics and Biomedical Engineering,
                  {IWBBIO} 2014, Granada, Spain, April 7-9, 2014},
  pages        = {286--297},
  publisher    = {Copicentro Editorial},
  year         = {2014},
  url          = {http://iwbbio.ugr.es/2014/papers/IWBBIO\_2014\_paper\_33.pdf},
  timestamp    = {Thu, 12 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/iwbbio/SiederdissenBAW14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/wob/SiederdissenPS14,
  author       = {Christian H{\"{o}}ner zu Siederdissen and
                  Sonja J. Prohaska and
                  Peter F. Stadler},
  editor       = {S{\'{e}}rgio Vale Aguiar Campos},
  title        = {Dynamic Programming for Set Data Types},
  booktitle    = {Advances in Bioinformatics and Computational Biology - 9th Brazilian
                  Symposium on Bioinformatics, {BSB} 2014, Belo Horizonte, Brazil, October
                  28-30, 2014, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {8826},
  pages        = {57--64},
  publisher    = {Springer},
  year         = {2014},
  url          = {https://doi.org/10.1007/978-3-319-12418-6\_8},
  doi          = {10.1007/978-3-319-12418-6\_8},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/wob/SiederdissenPS14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/corr/ZeckzerGSP14,
  author       = {Dirk Zeckzer and
                  Daniel Gerighausen and
                  Lydia Steiner and
                  Sonja J. Prohaska},
  title        = {Analyzing Chromatin Using Tiled Binned Scatterplot Matrices},
  journal      = {CoRR},
  volume       = {abs/1407.2084},
  year         = {2014},
  url          = {http://arxiv.org/abs/1407.2084},
  eprinttype    = {arXiv},
  eprint       = {1407.2084},
  timestamp    = {Mon, 13 Aug 2018 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/ZeckzerGSP14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bmcbi/LechnerFSMSP11,
  author       = {Marcus Lechner and
                  Sven Findei{\ss} and
                  Lydia Steiner and
                  Manja Marz and
                  Peter F. Stadler and
                  Sonja J. Prohaska},
  title        = {Proteinortho: Detection of (Co-)Orthologs in Large-Scale Analysis},
  journal      = {{BMC} Bioinform.},
  volume       = {12},
  pages        = {124},
  year         = {2011},
  url          = {https://doi.org/10.1186/1471-2105-12-124},
  doi          = {10.1186/1471-2105-12-124},
  timestamp    = {Sat, 09 Apr 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/LechnerFSMSP11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/cpm/OttoSP11,
  author       = {Wolfgang Otto and
                  Peter F. Stadler and
                  Sonja J. Prohaska},
  editor       = {Raffaele Giancarlo and
                  Giovanni Manzini},
  title        = {Phylogenetic Footprinting and Consistent Sets of Local Aligments},
  booktitle    = {Combinatorial Pattern Matching - 22nd Annual Symposium, {CPM} 2011,
                  Palermo, Italy, June 27-29, 2011. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6661},
  pages        = {118--131},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-21458-5\_12},
  doi          = {10.1007/978-3-642-21458-5\_12},
  timestamp    = {Thu, 13 Jun 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/cpm/OttoSP11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/gcb/ParikesitSP10,
  author       = {Arli A. Parikesit and
                  Peter F. Stadler and
                  Sonja J. Prohaska},
  editor       = {Dietmar Schomburg and
                  Andreas Grote},
  title        = {Quantitative Comparison of Genomic-Wide Protein Domain Distributions},
  booktitle    = {German Conference on Bioinformatics 2010, September 20-22, 2010, Technische
                  Universit{\"{a}}t Carolo Wilhelmina zu Braunschweig, Germany},
  series       = {{LNI}},
  volume       = {{P-173}},
  pages        = {93--102},
  publisher    = {{GI}},
  year         = {2010},
  url          = {https://dl.gi.de/handle/20.500.12116/19676},
  timestamp    = {Tue, 04 Jul 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/gcb/ParikesitSP10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/wob/ParikesitSP10,
  author       = {Arli A. Parikesit and
                  Peter F. Stadler and
                  Sonja J. Prohaska},
  editor       = {Carlos Eduardo Ferreira and
                  Satoru Miyano and
                  Peter F. Stadler},
  title        = {Detection of Protein Domains in Eukaryotic Genome Sequences},
  booktitle    = {Advances in Bioinformatics and Computational Biology, 5th Brazilian
                  Symposium on Bioinformatics, {BSB} 2010, Rio de Janeiro, Brazil, August
                  31-September 3, 2010. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6268},
  pages        = {71--74},
  publisher    = {Springer},
  year         = {2010},
  url          = {https://doi.org/10.1007/978-3-642-15060-9\_9},
  doi          = {10.1007/978-3-642-15060-9\_9},
  timestamp    = {Tue, 14 May 2019 10:00:50 +0200},
  biburl       = {https://dblp.org/rec/conf/wob/ParikesitSP10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/dam/MosigBPS09,
  author       = {Axel Mosig and
                  T{\"{u}}rker B{\'{\i}}y{\'{\i}}koglu and
                  Sonja J. Prohaska and
                  Peter F. Stadler},
  title        = {Discovering cis-regulatory modules by optimizing barbecues},
  journal      = {Discret. Appl. Math.},
  volume       = {157},
  number       = {10},
  pages        = {2458--2468},
  year         = {2009},
  url          = {https://doi.org/10.1016/j.dam.2008.06.042},
  doi          = {10.1016/J.DAM.2008.06.042},
  timestamp    = {Thu, 11 Feb 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/dam/MosigBPS09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/tib/StadlerPFK09,
  author       = {Peter F. Stadler and
                  Sonja J. Prohaska and
                  Christian V. Forst and
                  David C. Krakauer},
  title        = {Defining genes: a computational framework},
  journal      = {Theory Biosci.},
  volume       = {128},
  number       = {3},
  pages        = {165--170},
  year         = {2009},
  url          = {https://doi.org/10.1007/s12064-009-0067-y},
  doi          = {10.1007/S12064-009-0067-Y},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tib/StadlerPFK09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/bildmed/HeffelPSKK09,
  author       = {Andreas Heffel and
                  Sonja J. Prohaska and
                  Peter F. Stadler and
                  Gerhard Kauer and
                  Jens{-}Peer Kuska},
  editor       = {Hans{-}Peter Meinzer and
                  Thomas Martin Deserno and
                  Heinz Handels and
                  Thomas Tolxdorff},
  title        = {Automatic Classification of Embryonic Fruit Fly Gene Expression Patterns},
  booktitle    = {Bildverarbeitung f{\"{u}}r die Medizin 2009: Algorithmen - Systeme
                  - Anwendungen, Proceedings des Workshops vom 22. bis 25. M{\"{a}}rz
                  2009 in Heidelberg},
  series       = {Informatik Aktuell},
  pages        = {415--419},
  publisher    = {Springer},
  year         = {2009},
  url          = {https://doi.org/10.1007/978-3-540-93860-6\_84},
  doi          = {10.1007/978-3-540-93860-6\_84},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bildmed/HeffelPSKK09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/almob/DressFFGKPS08,
  author       = {Andreas W. M. Dress and
                  Christoph Flamm and
                  Guido Fritzsch and
                  Stefan Gr{\"{u}}newald and
                  Matthias Kruspe and
                  Sonja J. Prohaska and
                  Peter F. Stadler},
  title        = {Noisy: Identification of problematic columns in multiple sequence
                  alignments},
  journal      = {Algorithms Mol. Biol.},
  volume       = {3},
  year         = {2008},
  url          = {https://doi.org/10.1186/1748-7188-3-7},
  doi          = {10.1186/1748-7188-3-7},
  timestamp    = {Fri, 13 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/almob/DressFFGKPS08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bmcbi/LehmannSP08,
  author       = {J{\"{o}}rg Lehmann and
                  Peter F. Stadler and
                  Sonja J. Prohaska},
  title        = {SynBlast: Assisting the analysis of conserved synteny information},
  journal      = {{BMC} Bioinform.},
  volume       = {9},
  year         = {2008},
  url          = {https://doi.org/10.1186/1471-2105-9-351},
  doi          = {10.1186/1471-2105-9-351},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/LehmannSP08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/tib/ProhaskaS08,
  author       = {Sonja J. Prohaska and
                  Peter F. Stadler},
  title        = {"Genes"},
  journal      = {Theory Biosci.},
  volume       = {127},
  number       = {3},
  pages        = {215--221},
  year         = {2008},
  url          = {https://doi.org/10.1007/s12064-008-0025-0},
  doi          = {10.1007/S12064-008-0025-0},
  timestamp    = {Thu, 13 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tib/ProhaskaS08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/icip/HeffelSPKK08,
  author       = {Andreas Heffel and
                  Peter F. Stadler and
                  Sonja J. Prohaska and
                  Gerhard Kauer and
                  Jens{-}Peer Kuska},
  title        = {Process flow for classification and clustering of fruit fly gene expression
                  patterns},
  booktitle    = {Proceedings of the International Conference on Image Processing, {ICIP}
                  2008, October 12-15, 2008, San Diego, California, {USA}},
  pages        = {721--724},
  publisher    = {{IEEE}},
  year         = {2008},
  url          = {https://doi.org/10.1109/ICIP.2008.4711856},
  doi          = {10.1109/ICIP.2008.4711856},
  timestamp    = {Wed, 16 Oct 2019 14:14:52 +0200},
  biburl       = {https://dblp.org/rec/conf/icip/HeffelSPKK08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/almob/MorgensternPPS06,
  author       = {Burkhard Morgenstern and
                  Sonja J. Prohaska and
                  Dirk P{\"{o}}hler and
                  Peter F. Stadler},
  title        = {Multiple sequence alignment with user-defined anchor points},
  journal      = {Algorithms Mol. Biol.},
  volume       = {1},
  year         = {2006},
  url          = {https://doi.org/10.1186/1748-7188-1-6},
  doi          = {10.1186/1748-7188-1-6},
  timestamp    = {Fri, 13 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/almob/MorgensternPPS06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/MorgensternWPSSSSW05,
  author       = {Burkhard Morgenstern and
                  Nadine Werner and
                  Sonja J. Prohaska and
                  Rasmus Steinkamp and
                  Isabelle Schneider and
                  Amarendran Ramaswami Subramanian and
                  Peter F. Stadler and
                  Jan Weyer{-}Menkhoff},
  title        = {Multiple sequence alignment with user-defined constraints at {GOBICS}},
  journal      = {Bioinform.},
  volume       = {21},
  number       = {7},
  pages        = {1271--1273},
  year         = {2005},
  url          = {https://doi.org/10.1093/bioinformatics/bti142},
  doi          = {10.1093/BIOINFORMATICS/BTI142},
  timestamp    = {Wed, 20 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MorgensternWPSSSSW05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/tib/BompfunewererFFFHLMMMPSSTWW05,
  author       = {Athanasius F. Bompf{\"{u}}newerer and
                  Christoph Flamm and
                  Claudia Fried and
                  Guido Fritzsch and
                  Ivo L. Hofacker and
                  J{\"{o}}rg Lehmann and
                  Kristin Missal and
                  Axel Mosig and
                  Bettina M{\"{u}}ller and
                  Sonja J. Prohaska and
                  B{\"{a}}rbel M. R. Stadler and
                  Peter F. Stadler and
                  Andrea Tanzer and
                  Stefan Washietl and
                  Christina Witwer},
  title        = {Evolutionary patterns of non-coding RNAs},
  journal      = {Theory Biosci.},
  volume       = {123},
  number       = {4},
  pages        = {301--369},
  year         = {2005},
  url          = {https://doi.org/10.1016/j.thbio.2005.01.002},
  doi          = {10.1016/J.THBIO.2005.01.002},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tib/BompfunewererFFFHLMMMPSSTWW05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/jcisd/FriedHPSS04,
  author       = {Claudia Fried and
                  Wim Hordijk and
                  Sonja J. Prohaska and
                  Claus R. Stadler and
                  Peter F. Stadler},
  title        = {The Footprint Sorting Problem},
  journal      = {J. Chem. Inf. Model.},
  volume       = {44},
  number       = {2},
  pages        = {332--338},
  year         = {2004},
  url          = {https://doi.org/10.1021/ci030411\%2B},
  doi          = {10.1021/CI030411\%2B},
  timestamp    = {Fri, 06 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcisd/FriedHPSS04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/tib/ProhaskaS04,
  author       = {Sonja J. Prohaska and
                  Peter F. Stadler},
  title        = {The duplication of the \emph{Hox} gene clusters in teleost fishes},
  journal      = {Theory Biosci.},
  volume       = {123},
  number       = {1},
  pages        = {89--110},
  year         = {2004},
  url          = {https://doi.org/10.1016/j.thbio.2004.03.004},
  doi          = {10.1016/J.THBIO.2004.03.004},
  timestamp    = {Sat, 31 Jul 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tib/ProhaskaS04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/gcb/MorgensternPWWSSS04,
  author       = {Burkhard Morgenstern and
                  Sonja J. Prohaska and
                  Nadine Werner and
                  Jan Weyer{-}Menkhoff and
                  Isabelle Schneider and
                  Amarendran Ramaswami Subramanian and
                  Peter F. Stadler},
  editor       = {Robert Giegerich and
                  Jens Stoye},
  title        = {Multiple sequence alignment with user-defined constraints},
  booktitle    = {Proceedings of the German Conference on Bioinformatics {(GCB} 2004),
                  Bielefeld, Germany, October 4-6, 2004},
  series       = {{LNI}},
  volume       = {{P-53}},
  pages        = {25--36},
  publisher    = {{GI}},
  year         = {2004},
  url          = {https://dl.gi.de/handle/20.500.12116/28673},
  timestamp    = {Wed, 20 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/gcb/MorgensternPWWSSS04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

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