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ORCIDBibTeX records: Mert R. Sabuncu
@article{DBLP:journals/patterns/RajendranPSCZ024,
author = {Suraj Rajendran and
Weishen Pan and
Mert R. Sabuncu and
Yong Chen and
Jiayu Zhou and
Fei Wang},
title = {Learning across diverse biomedical data modalities and cohorts: Challenges
and opportunities for innovation},
journal = {Patterns},
volume = {5},
number = {2},
pages = {100913},
year = {2024},
url = {https://doi.org/10.1016/j.patter.2023.100913},
doi = {10.1016/J.PATTER.2023.100913},
timestamp = {Thu, 29 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/patterns/RajendranPSCZ024.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wacv/0002WKS24,
author = {Minh Nguyen and
Alan Q. Wang and
Heejong Kim and
Mert R. Sabuncu},
title = {Robust Learning via Conditional Prevalence Adjustment},
booktitle = {{IEEE/CVF} Winter Conference on Applications of Computer Vision, {WACV}
2024, Waikoloa, HI, USA, January 3-8, 2024},
pages = {2729--2738},
publisher = {{IEEE}},
year = {2024},
url = {https://doi.org/10.1109/WACV57701.2024.00272},
doi = {10.1109/WACV57701.2024.00272},
timestamp = {Wed, 17 Apr 2024 07:41:22 +0200},
biburl = {https://dblp.org/rec/conf/wacv/0002WKS24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/MaWDS23,
author = {Tianyu Ma and
Alan Q. Wang and
Adrian V. Dalca and
Mert R. Sabuncu},
title = {Hyper-convolutions via implicit kernels for medical image analysis},
journal = {Medical Image Anal.},
volume = {86},
pages = {102796},
year = {2023},
url = {https://doi.org/10.1016/j.media.2023.102796},
doi = {10.1016/J.MEDIA.2023.102796},
timestamp = {Thu, 15 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/mia/MaWDS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/WangYDS23,
author = {Alan Q. Wang and
Evan M. Yu and
Adrian V. Dalca and
Mert R. Sabuncu},
title = {A robust and interpretable deep learning framework for multi-modal
registration via keypoints},
journal = {Medical Image Anal.},
volume = {90},
pages = {102962},
year = {2023},
url = {https://doi.org/10.1016/j.media.2023.102962},
doi = {10.1016/J.MEDIA.2023.102962},
timestamp = {Tue, 28 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/mia/WangYDS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/ZhangSZNLLKSW23,
author = {Jinwei Zhang and
Pascal Spincemaille and
Hang Zhang and
Thanh D. Nguyen and
Chao Li and
Jiahao Li and
Ilhami Kovanlikaya and
Mert R. Sabuncu and
Yi Wang},
title = {{LARO:} Learned acquisition and reconstruction optimization to accelerate
quantitative susceptibility mapping},
journal = {NeuroImage},
volume = {268},
pages = {119886},
year = {2023},
url = {https://doi.org/10.1016/j.neuroimage.2023.119886},
doi = {10.1016/J.NEUROIMAGE.2023.119886},
timestamp = {Tue, 28 Mar 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/neuroimage/ZhangSZNLLKSW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/npjdm/ZhouCCRFCDCWLSBWM23,
author = {George Zhou and
Yunchan Chen and
Candace Chien and
Leslie Revatta and
Jannatul Ferdous and
Michelle Chen and
Shourov Deb and
Sol De Leon Cruz and
Alan Wang and
Benjamin Lee and
Mert R. Sabuncu and
William Browne and
Herrick Wun and
Bobak Mosadegh},
title = {Deep learning analysis of blood flow sounds to detect arteriovenous
fistula stenosis},
journal = {npj Digit. Medicine},
volume = {6},
year = {2023},
url = {https://doi.org/10.1038/s41746-023-00894-9},
doi = {10.1038/S41746-023-00894-9},
timestamp = {Sun, 31 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/npjdm/ZhouCCRFCDCWLSBWM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmlr/WangS23,
author = {Alan Q. Wang and
Mert R. Sabuncu},
title = {A Flexible Nadaraya-Watson Head Can Offer Explainable and Calibrated
Classification},
journal = {Trans. Mach. Learn. Res.},
volume = {2023},
year = {2023},
url = {https://openreview.net/forum?id=iEq6lhG4O3},
timestamp = {Thu, 18 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tmlr/WangS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccv/ButoiOMSGD23,
author = {Victor Ion Butoi and
Jose Javier Gonzalez Ortiz and
Tianyu Ma and
Mert R. Sabuncu and
John V. Guttag and
Adrian V. Dalca},
title = {UniverSeg: Universal Medical Image Segmentation},
booktitle = {{IEEE/CVF} International Conference on Computer Vision, {ICCV} 2023,
Paris, France, October 1-6, 2023},
pages = {21381--21394},
publisher = {{IEEE}},
year = {2023},
url = {https://doi.org/10.1109/ICCV51070.2023.01960},
doi = {10.1109/ICCV51070.2023.01960},
timestamp = {Tue, 23 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iccv/ButoiOMSGD23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iclr/RastogiSHLLDSK23,
author = {Richa Rastogi and
Yair Schiff and
Alon Hacohen and
Zhaozhi Li and
Ian Lee and
Yuntian Deng and
Mert R. Sabuncu and
Volodymyr Kuleshov},
title = {Semi-Parametric Inducing Point Networks and Neural Processes},
booktitle = {The Eleventh International Conference on Learning Representations,
{ICLR} 2023, Kigali, Rwanda, May 1-5, 2023},
publisher = {OpenReview.net},
year = {2023},
url = {https://openreview.net/pdf?id=FE99-fDrWd5},
timestamp = {Fri, 30 Jun 2023 14:38:38 +0200},
biburl = {https://dblp.org/rec/conf/iclr/RastogiSHLLDSK23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/BahadirLPS23,
author = {Cagla Deniz Bahadir and
Benjamin Liechty and
David J. Pisapia and
Mert R. Sabuncu},
editor = {Anirban Mukhopadhyay and
Ilkay {\"{O}}ks{\"{u}}z and
Sandy Engelhardt and
Dajiang Zhu and
Yixuan Yuan},
title = {Characterizing the Features of Mitotic Figures Using a Conditional
Diffusion Probabilistic Model},
booktitle = {Deep Generative Models - Third {MICCAI} Workshop, {DGM4MICCAI} 2023,
Held in Conjunction with {MICCAI} 2023, Vancouver, BC, Canada, October
8, 2023, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14533},
pages = {121--131},
publisher = {Springer},
year = {2023},
url = {https://doi.org/10.1007/978-3-031-53767-7\_12},
doi = {10.1007/978-3-031-53767-7\_12},
timestamp = {Sat, 16 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/miccai/BahadirLPS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/KimBDS23,
author = {Heejong Kim and
Victor Ion Butoi and
Adrian V. Dalca and
Mert R. Sabuncu},
editor = {M. Emre Celebi and
Md Sirajus Salekin and
Hyunwoo J. Kim and
Shadi Albarqouni and
Catarina Barata and
Allan Halpern and
Philipp Tschandl and
Marc Combalia and
Yuan Liu and
Ghada Zamzmi and
Joshua Levy and
Huzefa Rangwala and
Annika Reinke and
Diya Wynn and
Bennett A. Landman and
Won{-}Ki Jeong and
Yiqing Shen and
Zhongying Deng and
Spyridon Bakas and
Xiaoxiao Li and
Chen Qin and
Nicola Rieke and
Holger Roth and
Daguang Xu},
title = {Empirical Analysis of a Segmentation Foundation Model in Prostate
Imaging},
booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
2023 Workshops - {ISIC} 2023, Care-AI 2023, MedAGI 2023, DeCaF 2023,
Held in Conjunction with {MICCAI} 2023, Vancouver, BC, Canada, October
8-12, 2023, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14393},
pages = {140--150},
publisher = {Springer},
year = {2023},
url = {https://doi.org/10.1007/978-3-031-47401-9\_14},
doi = {10.1007/978-3-031-47401-9\_14},
timestamp = {Tue, 19 Dec 2023 16:57:58 +0100},
biburl = {https://dblp.org/rec/conf/miccai/KimBDS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/HeWS23,
author = {Xinzi He and
Alan Q. Wang and
Mert R. Sabuncu},
editor = {Hayit Greenspan and
Anant Madabhushi and
Parvin Mousavi and
Septimiu Salcudean and
James Duncan and
Tanveer F. Syeda{-}Mahmood and
Russell H. Taylor},
title = {Neural Pre-processing: {A} Learning Framework for End-to-End Brain
{MRI} Pre-processing},
booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
2023 - 26th International Conference, Vancouver, BC, Canada, October
8-12, 2023, Proceedings, Part {VIII}},
series = {Lecture Notes in Computer Science},
volume = {14227},
pages = {258--267},
publisher = {Springer},
year = {2023},
url = {https://doi.org/10.1007/978-3-031-43993-3\_25},
doi = {10.1007/978-3-031-43993-3\_25},
timestamp = {Thu, 05 Oct 2023 18:00:40 +0200},
biburl = {https://dblp.org/rec/conf/miccai/HeWS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/midl/GuJKS23,
author = {Zijin Gu and
Keith Jamison and
Amy Kuceyeski and
Mert R. Sabuncu},
editor = {Ipek Oguz and
Jack H. Noble and
Xiaoxiao Li and
Martin Styner and
Christian Baumgartner and
Mirabela Rusu and
Tobias Heimann and
Despina Kontos and
Bennett A. Landman and
Benoit M. Dawant},
title = {Decoding natural image stimuli from fMRI data with a surface-based
convolutional network},
booktitle = {Medical Imaging with Deep Learning, {MIDL} 2023, 10-12 July 2023,
Nashville, TN, {USA}},
series = {Proceedings of Machine Learning Research},
volume = {227},
pages = {107--118},
publisher = {{PMLR}},
year = {2023},
url = {https://proceedings.mlr.press/v227/gu24a.html},
timestamp = {Tue, 20 Feb 2024 17:19:52 +0100},
biburl = {https://dblp.org/rec/conf/midl/GuJKS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/midl/KimS23,
author = {Heejong Kim and
Mert R. Sabuncu},
editor = {Ipek Oguz and
Jack H. Noble and
Xiaoxiao Li and
Martin Styner and
Christian Baumgartner and
Mirabela Rusu and
Tobias Heimann and
Despina Kontos and
Bennett A. Landman and
Benoit M. Dawant},
title = {Learning to Compare Longitudinal Images},
booktitle = {Medical Imaging with Deep Learning, {MIDL} 2023, 10-12 July 2023,
Nashville, TN, {USA}},
series = {Proceedings of Machine Learning Research},
volume = {227},
pages = {350--367},
publisher = {{PMLR}},
year = {2023},
url = {https://proceedings.mlr.press/v227/kim24a.html},
timestamp = {Tue, 20 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/midl/KimS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/WangNS23,
author = {Alan Wang and
Minh Nguyen and
Mert R. Sabuncu},
editor = {Alice Oh and
Tristan Naumann and
Amir Globerson and
Kate Saenko and
Moritz Hardt and
Sergey Levine},
title = {Learning Invariant Representations with a Nonparametric Nadaraya-Watson
Head},
booktitle = {Advances in Neural Information Processing Systems 36: Annual Conference
on Neural Information Processing Systems 2023, NeurIPS 2023, New Orleans,
LA, USA, December 10 - 16, 2023},
year = {2023},
url = {http://papers.nips.cc/paper\_files/paper/2023/hash/0f6931a9e339a012a9909306d7c758b4-Abstract-Conference.html},
timestamp = {Fri, 01 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/nips/WangNS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2303-12148,
author = {Xinzi He and
Alan Wang and
Mert R. Sabuncu},
title = {Neural Pre-Processing: {A} Learning Framework for End-to-end Brain
{MRI} Pre-processing},
journal = {CoRR},
volume = {abs/2303.12148},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2303.12148},
doi = {10.48550/ARXIV.2303.12148},
eprinttype = {arXiv},
eprint = {2303.12148},
timestamp = {Thu, 13 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2303-12148.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2304-02531,
author = {Heejong Kim and
Mert R. Sabuncu},
title = {Learning to Compare Longitudinal Images},
journal = {CoRR},
volume = {abs/2304.02531},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2304.02531},
doi = {10.48550/ARXIV.2304.02531},
eprinttype = {arXiv},
eprint = {2304.02531},
timestamp = {Thu, 20 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2304-02531.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2304-06131,
author = {Victor Ion Butoi and
Jose Javier Gonzalez Ortiz and
Tianyu Ma and
Mert R. Sabuncu and
John V. Guttag and
Adrian V. Dalca},
title = {UniverSeg: Universal Medical Image Segmentation},
journal = {CoRR},
volume = {abs/2304.06131},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2304.06131},
doi = {10.48550/ARXIV.2304.06131},
eprinttype = {arXiv},
eprint = {2304.06131},
timestamp = {Wed, 19 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2304-06131.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2304-09941,
author = {Alan Q. Wang and
Evan M. Yu and
Adrian V. Dalca and
Mert R. Sabuncu},
title = {A robust and interpretable deep learning framework for multi-modal
registration via keypoints},
journal = {CoRR},
volume = {abs/2304.09941},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2304.09941},
doi = {10.48550/ARXIV.2304.09941},
eprinttype = {arXiv},
eprint = {2304.09941},
timestamp = {Mon, 24 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2304-09941.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2305-06217,
author = {Suraj Rajendran and
Weishen Pan and
Mert R. Sabuncu and
Yong Chen and
Jiayu Zhou and
Fei Wang},
title = {Patchwork Learning: {A} Paradigm Towards Integrative Analysis across
Diverse Biomedical Data Sources},
journal = {CoRR},
volume = {abs/2305.06217},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2305.06217},
doi = {10.48550/ARXIV.2305.06217},
eprinttype = {arXiv},
eprint = {2305.06217},
timestamp = {Tue, 16 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2305-06217.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2307-03266,
author = {Heejong Kim and
Victor Ion Butoi and
Adrian V. Dalca and
Mert R. Sabuncu},
title = {Empirical Analysis of a Segmentation Foundation Model in Prostate
Imaging},
journal = {CoRR},
volume = {abs/2307.03266},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2307.03266},
doi = {10.48550/ARXIV.2307.03266},
eprinttype = {arXiv},
eprint = {2307.03266},
timestamp = {Mon, 10 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2307-03266.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2309-13377,
author = {Alan Q. Wang and
Minh Nguyen and
Mert R. Sabuncu},
title = {Learning Invariant Representations with a Nonparametric Nadaraya-Watson
Head},
journal = {CoRR},
volume = {abs/2309.13377},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2309.13377},
doi = {10.48550/ARXIV.2309.13377},
eprinttype = {arXiv},
eprint = {2309.13377},
timestamp = {Wed, 27 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2309-13377.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2310-01685,
author = {Alan Q. Wang and
Batuhan K. Karaman and
Heejong Kim and
Jacob Rosenthal and
Rachit Saluja and
Sean I. Young and
Mert R. Sabuncu},
title = {A Framework for Interpretability in Machine Learning for Medical Imaging},
journal = {CoRR},
volume = {abs/2310.01685},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2310.01685},
doi = {10.48550/ARXIV.2310.01685},
eprinttype = {arXiv},
eprint = {2310.01685},
timestamp = {Thu, 19 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2310-01685.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2310-03893,
author = {Cagla Deniz Bahadir and
Benjamin Liechty and
David J. Pisapia and
Mert R. Sabuncu},
title = {Characterizing the Features of Mitotic Figures Using a Conditional
Diffusion Probabilistic Model},
journal = {CoRR},
volume = {abs/2310.03893},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2310.03893},
doi = {10.48550/ARXIV.2310.03893},
eprinttype = {arXiv},
eprint = {2310.03893},
timestamp = {Thu, 19 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2310-03893.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2310-14105,
author = {Minh Nguyen and
Gia H. Ngo and
Mert R. Sabuncu},
title = {Zero-shot Learning of Individualized Task Contrast Prediction from
Resting-state Functional Connectomes},
journal = {CoRR},
volume = {abs/2310.14105},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2310.14105},
doi = {10.48550/ARXIV.2310.14105},
eprinttype = {arXiv},
eprint = {2310.14105},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2310-14105.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2310-15766,
author = {Minh Nguyen and
Alan Q. Wang and
Heejong Kim and
Mert R. Sabuncu},
title = {Robust Learning via Conditional Prevalence Adjustment},
journal = {CoRR},
volume = {abs/2310.15766},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2310.15766},
doi = {10.48550/ARXIV.2310.15766},
eprinttype = {arXiv},
eprint = {2310.15766},
timestamp = {Tue, 31 Oct 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2310-15766.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/NgoNCS22,
author = {Gia H. Ngo and
Minh Nguyen and
Nancy F. Chen and
Mert R. Sabuncu},
title = {A transformer-Based neural language model that synthesizes brain activation
maps from free-form text queries},
journal = {Medical Image Anal.},
volume = {81},
pages = {102540},
year = {2022},
url = {https://doi.org/10.1016/j.media.2022.102540},
doi = {10.1016/J.MEDIA.2022.102540},
timestamp = {Sun, 13 Nov 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/mia/NgoNCS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/GuJKAWSNKSK22,
author = {Zijin Gu and
Keith Jamison and
Meenakshi Khosla and
Emily J. Allen and
Yihan Wu and
Ghislain St{-}Yves and
Thomas Naselaris and
Kendrick N. Kay and
Mert R. Sabuncu and
Amy Kuceyeski},
title = {NeuroGen: Activation optimized image synthesis for discovery neuroscience},
journal = {NeuroImage},
volume = {247},
pages = {118812},
year = {2022},
url = {https://doi.org/10.1016/j.neuroimage.2021.118812},
doi = {10.1016/J.NEUROIMAGE.2021.118812},
timestamp = {Tue, 16 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/neuroimage/GuJKAWSNKSK22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/NgoKJKS22,
author = {Gia H. Ngo and
Meenakshi Khosla and
Keith Jamison and
Amy Kuceyeski and
Mert R. Sabuncu},
title = {Predicting individual task contrasts from resting-state functional
connectivity using a surface-based convolutional network},
journal = {NeuroImage},
volume = {248},
pages = {118849},
year = {2022},
url = {https://doi.org/10.1016/j.neuroimage.2021.118849},
doi = {10.1016/J.NEUROIMAGE.2021.118849},
timestamp = {Mon, 14 Feb 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/neuroimage/NgoKJKS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/midl/MaLS22,
author = {Tianyu Ma and
Benjamin C. Lee and
Mert R. Sabuncu},
editor = {Ender Konukoglu and
Bjoern H. Menze and
Archana Venkataraman and
Christian F. Baumgartner and
Qi Dou and
Shadi Albarqouni},
title = {Label conditioned segmentation},
booktitle = {International Conference on Medical Imaging with Deep Learning, {MIDL}
2022, 6-8 July 2022, Zurich, Switzerland},
series = {Proceedings of Machine Learning Research},
volume = {172},
pages = {847--857},
publisher = {{PMLR}},
year = {2022},
url = {https://proceedings.mlr.press/v172/ma22a.html},
timestamp = {Fri, 17 Feb 2023 16:29:10 +0100},
biburl = {https://dblp.org/rec/conf/midl/MaLS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/midl/YuWDS22,
author = {Evan M. Yu and
Alan Q. Wang and
Adrian V. Dalca and
Mert R. Sabuncu},
editor = {Ender Konukoglu and
Bjoern H. Menze and
Archana Venkataraman and
Christian F. Baumgartner and
Qi Dou and
Shadi Albarqouni},
title = {KeyMorph: Robust Multi-modal Affine Registration via Unsupervised
Keypoint Detection},
booktitle = {International Conference on Medical Imaging with Deep Learning, {MIDL}
2022, 6-8 July 2022, Zurich, Switzerland},
series = {Proceedings of Machine Learning Research},
volume = {172},
pages = {1482--1503},
publisher = {{PMLR}},
year = {2022},
url = {https://proceedings.mlr.press/v172/yu22a.html},
timestamp = {Fri, 17 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/midl/YuWDS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/KhoslaJKS22,
author = {Meenakshi Khosla and
Keith Jamison and
Amy Kuceyeski and
Mert R. Sabuncu},
editor = {Sanmi Koyejo and
S. Mohamed and
A. Agarwal and
Danielle Belgrave and
K. Cho and
A. Oh},
title = {Characterizing the Ventral Visual Stream with Response-Optimized Neural
Encoding Models},
booktitle = {Advances in Neural Information Processing Systems 35: Annual Conference
on Neural Information Processing Systems 2022, NeurIPS 2022, New Orleans,
LA, USA, November 28 - December 9, 2022},
year = {2022},
url = {http://papers.nips.cc/paper\_files/paper/2022/hash/3d278eebf6e555e6efd050817d774586-Abstract-Conference.html},
timestamp = {Mon, 08 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/nips/KhoslaJKS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wacv/MaDS22,
author = {Tianyu Ma and
Adrian V. Dalca and
Mert R. Sabuncu},
title = {Hyper-Convolution Networks for Biomedical Image Segmentation},
booktitle = {{IEEE/CVF} Winter Conference on Applications of Computer Vision, {WACV}
2022, Waikoloa, HI, USA, January 3-8, 2022},
pages = {1989--1998},
publisher = {{IEEE}},
year = {2022},
url = {https://doi.org/10.1109/WACV51458.2022.00205},
doi = {10.1109/WACV51458.2022.00205},
timestamp = {Thu, 17 Feb 2022 14:50:06 +0100},
biburl = {https://dblp.org/rec/conf/wacv/MaDS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2202-02245,
author = {Zijin Gu and
Keith Jamison and
Mert R. Sabuncu and
Amy Kuceyeski},
title = {Personalized visual encoding model construction with small data},
journal = {CoRR},
volume = {abs/2202.02245},
year = {2022},
url = {https://arxiv.org/abs/2202.02245},
eprinttype = {arXiv},
eprint = {2202.02245},
timestamp = {Thu, 10 Feb 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2202-02245.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2202-02701,
author = {Tianyu Ma and
Alan Q. Wang and
Adrian V. Dalca and
Mert R. Sabuncu},
title = {Hyper-Convolutions via Implicit Kernels for Medical Imaging},
journal = {CoRR},
volume = {abs/2202.02701},
year = {2022},
url = {https://arxiv.org/abs/2202.02701},
eprinttype = {arXiv},
eprint = {2202.02701},
timestamp = {Thu, 10 Feb 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2202-02701.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2202-11009,
author = {Alan Q. Wang and
Adrian V. Dalca and
Mert R. Sabuncu},
title = {Computing Multiple Image Reconstructions with a Single Hypernetwork},
journal = {CoRR},
volume = {abs/2202.11009},
year = {2022},
url = {https://arxiv.org/abs/2202.11009},
eprinttype = {arXiv},
eprint = {2202.11009},
timestamp = {Wed, 02 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2202-11009.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2203-10091,
author = {Tianyu Ma and
Benjamin C. Lee and
Mert R. Sabuncu},
title = {Label conditioned segmentation},
journal = {CoRR},
volume = {abs/2203.10091},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2203.10091},
doi = {10.48550/ARXIV.2203.10091},
eprinttype = {arXiv},
eprint = {2203.10091},
timestamp = {Wed, 30 Mar 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2203-10091.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2205-11718,
author = {Richa Rastogi and
Yuntian Deng and
Ian Lee and
Mert R. Sabuncu and
Volodymyr Kuleshov},
title = {Semi-Parametric Deep Neural Networks in Linear Time and Memory},
journal = {CoRR},
volume = {abs/2205.11718},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2205.11718},
doi = {10.48550/ARXIV.2205.11718},
eprinttype = {arXiv},
eprint = {2205.11718},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2205-11718.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2208-00840,
author = {Gia H. Ngo and
Minh Nguyen and
Nancy F. Chen and
Mert R. Sabuncu},
title = {A Transformer-based Neural Language Model that Synthesizes Brain Activation
Maps from Free-Form Text Queries},
journal = {CoRR},
volume = {abs/2208.00840},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2208.00840},
doi = {10.48550/ARXIV.2208.00840},
eprinttype = {arXiv},
eprint = {2208.00840},
timestamp = {Wed, 10 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2208-00840.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2210-07416,
author = {Minh Nguyen and
Gia H. Ngo and
Mert R. Sabuncu},
title = {{GLACIAL:} Granger and Learning-based Causality Analysis for Longitudinal
Studies},
journal = {CoRR},
volume = {abs/2210.07416},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2210.07416},
doi = {10.48550/ARXIV.2210.07416},
eprinttype = {arXiv},
eprint = {2210.07416},
timestamp = {Tue, 18 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2210-07416.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2211-00725,
author = {Jinwei Zhang and
Pascal Spincemaille and
Hang Zhang and
Thanh D. Nguyen and
Chao Li and
Jiahao Li and
Ilhami Kovanlikaya and
Mert R. Sabuncu and
Yi Wang},
title = {{LARO:} Learned Acquisition and Reconstruction Optimization to accelerate
Quantitative Susceptibility Mapping},
journal = {CoRR},
volume = {abs/2211.00725},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2211.00725},
doi = {10.48550/ARXIV.2211.00725},
eprinttype = {arXiv},
eprint = {2211.00725},
timestamp = {Mon, 07 Nov 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2211-00725.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2212-02409,
author = {Zijin Gu and
Keith Jamison and
Amy Kuceyeski and
Mert R. Sabuncu},
title = {Decoding natural image stimuli from fMRI data with a surface-based
convolutional network},
journal = {CoRR},
volume = {abs/2212.02409},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2212.02409},
doi = {10.48550/ARXIV.2212.02409},
eprinttype = {arXiv},
eprint = {2212.02409},
timestamp = {Thu, 08 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2212-02409.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2212-03411,
author = {Alan Q. Wang and
Mert R. Sabuncu},
title = {A Simple Nadaraya-Watson Head can offer Explainable and Calibrated
Classification},
journal = {CoRR},
volume = {abs/2212.03411},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2212.03411},
doi = {10.48550/ARXIV.2212.03411},
eprinttype = {arXiv},
eprint = {2212.03411},
timestamp = {Mon, 02 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2212-03411.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/WangDS21,
author = {Alan Q. Wang and
Adrian V. Dalca and
Mert R. Sabuncu},
editor = {Nandinee Fariah Haq and
Patricia Johnson and
Andreas Maier and
Tobias W{\"{u}}rfl and
Jaejun Yoo},
title = {HyperRecon: Regularization-Agnostic {CS-MRI} Reconstruction with Hypernetworks},
booktitle = {Machine Learning for Medical Image Reconstruction - 4th International
Workshop, {MLMIR} 2021, Held in Conjunction with {MICCAI} 2021, Strasbourg,
France, October 1, 2021, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12964},
pages = {3--13},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-3-030-88552-6\_1},
doi = {10.1007/978-3-030-88552-6\_1},
timestamp = {Thu, 14 Oct 2021 16:58:44 +0200},
biburl = {https://dblp.org/rec/conf/miccai/WangDS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/WangLMXS21,
author = {Alan Q. Wang and
Aaron K. LaViolette and
Leo Moon and
Chris Xu and
Mert R. Sabuncu},
editor = {Marleen de Bruijne and
Philippe C. Cattin and
St{\'{e}}phane Cotin and
Nicolas Padoy and
Stefanie Speidel and
Yefeng Zheng and
Caroline Essert},
title = {Joint Optimization of Hadamard Sensing and Reconstruction in Compressed
Sensing Fluorescence Microscopy},
booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
2021 - 24th International Conference, Strasbourg, France, September
27 - October 1, 2021, Proceedings, Part {VI}},
series = {Lecture Notes in Computer Science},
volume = {12906},
pages = {129--139},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-3-030-87231-1\_13},
doi = {10.1007/978-3-030-87231-1\_13},
timestamp = {Tue, 21 Dec 2021 17:19:23 +0100},
biburl = {https://dblp.org/rec/conf/miccai/WangLMXS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/ZhangZLSSNW21,
author = {Jinwei Zhang and
Hang Zhang and
Chao Li and
Pascal Spincemaille and
Mert R. Sabuncu and
Thanh D. Nguyen and
Yi Wang},
editor = {Marleen de Bruijne and
Philippe C. Cattin and
St{\'{e}}phane Cotin and
Nicolas Padoy and
Stefanie Speidel and
Yefeng Zheng and
Caroline Essert},
title = {Temporal Feature Fusion with Sampling Pattern Optimization for Multi-echo
Gradient Echo Acquisition and Image Reconstruction},
booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
2021 - 24th International Conference, Strasbourg, France, September
27 - October 1, 2021, Proceedings, Part {VI}},
series = {Lecture Notes in Computer Science},
volume = {12906},
pages = {232--242},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-3-030-87231-1\_23},
doi = {10.1007/978-3-030-87231-1\_23},
timestamp = {Tue, 28 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/miccai/ZhangZLSSNW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/NgoNCS21,
author = {Gia H. Ngo and
Minh Nguyen and
Nancy F. Chen and
Mert R. Sabuncu},
editor = {Marleen de Bruijne and
Philippe C. Cattin and
St{\'{e}}phane Cotin and
Nicolas Padoy and
Stefanie Speidel and
Yefeng Zheng and
Caroline Essert},
title = {Text2Brain: Synthesis of Brain Activation Maps from Free-Form Text
Query},
booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
2021 - 24th International Conference, Strasbourg, France, September
27 - October 1, 2021, Proceedings, Part {VII}},
series = {Lecture Notes in Computer Science},
volume = {12907},
pages = {605--614},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-3-030-87234-2\_57},
doi = {10.1007/978-3-030-87234-2\_57},
timestamp = {Tue, 21 Dec 2021 17:19:23 +0100},
biburl = {https://dblp.org/rec/conf/miccai/NgoNCS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/midl/ZhangZSNS021,
author = {Jinwei Zhang and
Hang Zhang and
Pascal Spincemaille and
Thanh D. Nguyen and
Mert R. Sabuncu and
Yi Wang},
editor = {Mattias P. Heinrich and
Qi Dou and
Marleen de Bruijne and
Jan Lellmann and
Alexander Schlaefer and
Floris Ernst},
title = {Hybrid optimization between iterative and network fine-tuning reconstructions
for fast quantitative susceptibility mapping},
booktitle = {Medical Imaging with Deep Learning, 7-9 July 2021, L{\"{u}}beck,
Germany},
series = {Proceedings of Machine Learning Research},
volume = {143},
pages = {870--880},
publisher = {{PMLR}},
year = {2021},
url = {https://proceedings.mlr.press/v143/zhang21c.html},
timestamp = {Tue, 13 Dec 2022 14:39:07 +0100},
biburl = {https://dblp.org/rec/conf/midl/ZhangZSNS021.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wacv/MaZOVNGWS21,
author = {Tianyu Ma and
Hang Zhang and
Hanley Ong and
Amar Vora and
Thanh D. Nguyen and
Ajay Gupta and
Yi Wang and
Mert R. Sabuncu},
title = {Ensembling Low Precision Models for Binary Biomedical Image Segmentation},
booktitle = {{IEEE} Winter Conference on Applications of Computer Vision, {WACV}
2021, Waikoloa, HI, USA, January 3-8, 2021},
pages = {325--334},
publisher = {{IEEE}},
year = {2021},
url = {https://doi.org/10.1109/WACV48630.2021.00037},
doi = {10.1109/WACV48630.2021.00037},
timestamp = {Wed, 11 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wacv/MaZOVNGWS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wacv/ShenZSS21,
author = {Yichen Shen and
Zhilu Zhang and
Mert R. Sabuncu and
Lin Sun},
title = {Real-Time Uncertainty Estimation in Computer Vision via Uncertainty-Aware
Distribution Distillation},
booktitle = {{IEEE} Winter Conference on Applications of Computer Vision, {WACV}
2021, Waikoloa, HI, USA, January 3-8, 2021},
pages = {707--716},
publisher = {{IEEE}},
year = {2021},
url = {https://doi.org/10.1109/WACV48630.2021.00075},
doi = {10.1109/WACV48630.2021.00075},
timestamp = {Fri, 18 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wacv/ShenZSS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2101-02194,
author = {Alan Q. Wang and
Adrian V. Dalca and
Mert R. Sabuncu},
title = {Regularization-Agnostic Compressed Sensing {MRI} Reconstruction with
Hypernetworks},
journal = {CoRR},
volume = {abs/2101.02194},
year = {2021},
url = {https://arxiv.org/abs/2101.02194},
eprinttype = {arXiv},
eprint = {2101.02194},
timestamp = {Sun, 24 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2101-02194.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2105-07140,
author = {Zijin Gu and
Keith Jamison and
Meenakshi Khosla and
Emily J. Allen and
Yihan Wu and
Thomas Naselaris and
Kendrick N. Kay and
Mert R. Sabuncu and
Amy Kuceyeski},
title = {NeuroGen: activation optimized image synthesis for discovery neuroscience},
journal = {CoRR},
volume = {abs/2105.07140},
year = {2021},
url = {https://arxiv.org/abs/2105.07140},
eprinttype = {arXiv},
eprint = {2105.07140},
timestamp = {Tue, 11 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2105-07140.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2105-07961,
author = {Alan Q. Wang and
Aaron K. LaViolette and
Leo Moon and
Chris Xu and
Mert R. Sabuncu},
title = {Joint Optimization of Hadamard Sensing and Reconstruction in Compressed
Sensing Fluorescence Microscopy},
journal = {CoRR},
volume = {abs/2105.07961},
year = {2021},
url = {https://arxiv.org/abs/2105.07961},
eprinttype = {arXiv},
eprint = {2105.07961},
timestamp = {Tue, 18 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2105-07961.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2105-10559,
author = {Tianyu Ma and
Adrian V. Dalca and
Mert R. Sabuncu},
title = {Hyper-Convolution Networks for Biomedical Image Segmentation},
journal = {CoRR},
volume = {abs/2105.10559},
year = {2021},
url = {https://arxiv.org/abs/2105.10559},
eprinttype = {arXiv},
eprint = {2105.10559},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2105-10559.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2106-04767,
author = {Zhilu Zhang and
Vianne R. Gao and
Mert R. Sabuncu},
title = {Ex uno plures: Splitting One Model into an Ensemble of Subnetworks},
journal = {CoRR},
volume = {abs/2106.04767},
year = {2021},
url = {https://arxiv.org/abs/2106.04767},
eprinttype = {arXiv},
eprint = {2106.04767},
timestamp = {Tue, 15 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2106-04767.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2109-13814,
author = {Gia H. Ngo and
Minh Nguyen and
Nancy F. Chen and
Mert R. Sabuncu},
title = {Text2Brain: Synthesis of Brain Activation Maps from Free-form Text
Query},
journal = {CoRR},
volume = {abs/2109.13814},
year = {2021},
url = {https://arxiv.org/abs/2109.13814},
eprinttype = {arXiv},
eprint = {2109.13814},
timestamp = {Mon, 04 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2109-13814.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/HeKHNSEBFY20,
author = {Tong He and
Ru Kong and
Avram J. Holmes and
Minh Nguyen and
Mert R. Sabuncu and
Simon B. Eickhoff and
Danilo Bzdok and
Jiashi Feng and
B. T. Thomas Yeo},
title = {Deep neural networks and kernel regression achieve comparable accuracies
for functional connectivity prediction of behavior and demographics},
journal = {NeuroImage},
volume = {206},
year = {2020},
url = {https://doi.org/10.1016/j.neuroimage.2019.116276},
doi = {10.1016/J.NEUROIMAGE.2019.116276},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/neuroimage/HeKHNSEBFY20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/ZhangLZZSNSW20,
author = {Jinwei Zhang and
Zhe Liu and
Shun Zhang and
Hang Zhang and
Pascal Spincemaille and
Thanh D. Nguyen and
Mert R. Sabuncu and
Yi Wang},
title = {Fidelity imposed network edit {(FINE)} for solving ill-posed image
reconstruction},
journal = {NeuroImage},
volume = {211},
pages = {116579},
year = {2020},
url = {https://doi.org/10.1016/j.neuroimage.2020.116579},
doi = {10.1016/J.NEUROIMAGE.2020.116579},
timestamp = {Thu, 20 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/neuroimage/ZhangLZZSNSW20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tci/BahadirWDS20,
author = {Cagla Deniz Bahadir and
Alan Q. Wang and
Adrian V. Dalca and
Mert R. Sabuncu},
title = {Deep-Learning-Based Optimization of the Under-Sampling Pattern in
{MRI}},
journal = {{IEEE} Trans. Computational Imaging},
volume = {6},
pages = {1139--1152},
year = {2020},
url = {https://doi.org/10.1109/TCI.2020.3006727},
doi = {10.1109/TCI.2020.3006727},
timestamp = {Tue, 06 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tci/BahadirWDS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cvpr/ChangQZSCZM20,
author = {Qi Chang and
Hui Qu and
Yikai Zhang and
Mert R. Sabuncu and
Chao Chen and
Tong Zhang and
Dimitris N. Metaxas},
title = {Synthetic Learning: Learn From Distributed Asynchronized Discriminator
{GAN} Without Sharing Medical Image Data},
booktitle = {2020 {IEEE/CVF} Conference on Computer Vision and Pattern Recognition,
{CVPR} 2020, Seattle, WA, USA, June 13-19, 2020},
pages = {13853--13863},
publisher = {Computer Vision Foundation / {IEEE}},
year = {2020},
url = {https://openaccess.thecvf.com/content\_CVPR\_2020/html/Chang\_Synthetic\_Learning\_Learn\_From\_Distributed\_Asynchronized\_Discriminator\_GAN\_Without\_Sharing\_CVPR\_2020\_paper.html},
doi = {10.1109/CVPR42600.2020.01387},
timestamp = {Tue, 31 Aug 2021 14:00:04 +0200},
biburl = {https://dblp.org/rec/conf/cvpr/ChangQZSCZM20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/MaGS20,
author = {Tianyu Ma and
Ajay Gupta and
Mert R. Sabuncu},
title = {Volumetric Landmark Detection with a Multi-Scale Shift Equivariant
Neural Network},
booktitle = {17th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
2020, Iowa City, IA, USA, April 3-7, 2020},
pages = {981--985},
publisher = {{IEEE}},
year = {2020},
url = {https://doi.org/10.1109/ISBI45749.2020.9098620},
doi = {10.1109/ISBI45749.2020.9098620},
timestamp = {Wed, 04 Oct 2023 17:01:25 +0200},
biburl = {https://dblp.org/rec/conf/isbi/MaGS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/WangDS20,
author = {Alan Q. Wang and
Adrian V. Dalca and
Mert R. Sabuncu},
editor = {Farah Deeba and
Patricia Johnson and
Tobias W{\"{u}}rfl and
Jong Chul Ye},
title = {Neural Network-Based Reconstruction in Compressed Sensing {MRI} Without
Fully-Sampled Training Data},
booktitle = {Machine Learning for Medical Image Reconstruction - Third International
Workshop, {MLMIR} 2020, Held in Conjunction with {MICCAI} 2020, Lima,
Peru, October 8, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12450},
pages = {27--37},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-61598-7\_3},
doi = {10.1007/978-3-030-61598-7\_3},
timestamp = {Mon, 02 Nov 2020 18:32:01 +0100},
biburl = {https://dblp.org/rec/conf/miccai/WangDS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/NgoKJKS20,
author = {Gia H. Ngo and
Meenakshi Khosla and
Keith Jamison and
Amy Kuceyeski and
Mert R. Sabuncu},
editor = {Anne L. Martel and
Purang Abolmaesumi and
Danail Stoyanov and
Diana Mateus and
Maria A. Zuluaga and
S. Kevin Zhou and
Daniel Racoceanu and
Leo Joskowicz},
title = {From Connectomic to Task-Evoked Fingerprints: Individualized Prediction
of Task Contrasts from Resting-State Functional Connectivity},
booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
2020 - 23rd International Conference, Lima, Peru, October 4-8, 2020,
Proceedings, Part {VII}},
series = {Lecture Notes in Computer Science},
volume = {12267},
pages = {62--71},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-59728-3\_7},
doi = {10.1007/978-3-030-59728-3\_7},
timestamp = {Mon, 26 Apr 2021 14:27:06 +0200},
biburl = {https://dblp.org/rec/conf/miccai/NgoKJKS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/ZhangZWZSSNW20,
author = {Jinwei Zhang and
Hang Zhang and
Alan Wang and
Qihao Zhang and
Mert R. Sabuncu and
Pascal Spincemaille and
Thanh D. Nguyen and
Yi Wang},
editor = {Farah Deeba and
Patricia Johnson and
Tobias W{\"{u}}rfl and
Jong Chul Ye},
title = {Extending {LOUPE} for K-Space Under-Sampling Pattern Optimization
in Multi-coil {MRI}},
booktitle = {Machine Learning for Medical Image Reconstruction - Third International
Workshop, {MLMIR} 2020, Held in Conjunction with {MICCAI} 2020, Lima,
Peru, October 8, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12450},
pages = {91--101},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-61598-7\_9},
doi = {10.1007/978-3-030-61598-7\_9},
timestamp = {Fri, 27 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/miccai/ZhangZWZSSNW20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/YuDS20,
author = {Evan M. Yu and
Adrian V. Dalca and
Mert R. Sabuncu},
editor = {Mingxia Liu and
Pingkun Yan and
Chunfeng Lian and
Xiaohuan Cao},
title = {Learning Conditional Deformable Shape Templates for Brain Anatomy},
booktitle = {Machine Learning in Medical Imaging - 11th International Workshop,
{MLMI} 2020, Held in Conjunction with {MICCAI} 2020, Lima, Peru, October
4, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12436},
pages = {353--362},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-59861-7\_36},
doi = {10.1007/978-3-030-59861-7\_36},
timestamp = {Tue, 18 Jan 2022 13:58:27 +0100},
biburl = {https://dblp.org/rec/conf/miccai/YuDS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/KhoslaNJKS20,
author = {Meenakshi Khosla and
Gia H. Ngo and
Keith Jamison and
Amy Kuceyeski and
Mert R. Sabuncu},
editor = {Anne L. Martel and
Purang Abolmaesumi and
Danail Stoyanov and
Diana Mateus and
Maria A. Zuluaga and
S. Kevin Zhou and
Daniel Racoceanu and
Leo Joskowicz},
title = {A Shared Neural Encoding Model for the Prediction of Subject-Specific
fMRI Response},
booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
2020 - 23rd International Conference, Lima, Peru, October 4-8, 2020,
Proceedings, Part {VII}},
series = {Lecture Notes in Computer Science},
volume = {12267},
pages = {539--548},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-59728-3\_53},
doi = {10.1007/978-3-030-59728-3\_53},
timestamp = {Tue, 06 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/miccai/KhoslaNJKS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/midl/YuIDS20,
author = {Evan M. Yu and
Juan Eugenio Iglesias and
Adrian V. Dalca and
Mert R. Sabuncu},
editor = {Tal Arbel and
Ismail Ben Ayed and
Marleen de Bruijne and
Maxime Descoteaux and
Herv{\'{e}} Lombaert and
Christopher Pal},
title = {An Auto-Encoder Strategy for Adaptive Image Segmentation},
booktitle = {International Conference on Medical Imaging with Deep Learning, {MIDL}
2020, 6-8 July 2020, Montr{\'{e}}al, QC, Canada},
series = {Proceedings of Machine Learning Research},
volume = {121},
pages = {881--891},
publisher = {{PMLR}},
year = {2020},
url = {http://proceedings.mlr.press/v121/yu20a.html},
timestamp = {Fri, 27 Nov 2020 12:58:38 +0100},
biburl = {https://dblp.org/rec/conf/midl/YuIDS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/midl/Zhang0SSN020,
author = {Jinwei Zhang and
Hang Zhang and
Mert R. Sabuncu and
Pascal Spincemaille and
Thanh D. Nguyen and
Yi Wang},
editor = {Tal Arbel and
Ismail Ben Ayed and
Marleen de Bruijne and
Maxime Descoteaux and
Herv{\'{e}} Lombaert and
Christopher Pal},
title = {Bayesian Learning of Probabilistic Dipole Inversion for Quantitative
Susceptibility Mapping},
booktitle = {International Conference on Medical Imaging with Deep Learning, {MIDL}
2020, 6-8 July 2020, Montr{\'{e}}al, QC, Canada},
series = {Proceedings of Machine Learning Research},
volume = {121},
pages = {892--902},
publisher = {{PMLR}},
year = {2020},
url = {http://proceedings.mlr.press/v121/zhang20b.html},
timestamp = {Fri, 27 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/midl/Zhang0SSN020.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/KhoslaNJKS20,
author = {Meenakshi Khosla and
Gia H. Ngo and
Keith Jamison and
Amy Kuceyeski and
Mert R. Sabuncu},
editor = {Hugo Larochelle and
Marc'Aurelio Ranzato and
Raia Hadsell and
Maria{-}Florina Balcan and
Hsuan{-}Tien Lin},
title = {Neural encoding with visual attention},
booktitle = {Advances in Neural Information Processing Systems 33: Annual Conference
on Neural Information Processing Systems 2020, NeurIPS 2020, December
6-12, 2020, virtual},
year = {2020},
url = {https://proceedings.neurips.cc/paper/2020/hash/b71f5aaf3371c2cdfb7a7c0497f569d4-Abstract.html},
timestamp = {Tue, 19 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/nips/KhoslaNJKS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/ZhangS20,
author = {Zhilu Zhang and
Mert R. Sabuncu},
editor = {Hugo Larochelle and
Marc'Aurelio Ranzato and
Raia Hadsell and
Maria{-}Florina Balcan and
Hsuan{-}Tien Lin},
title = {Self-Distillation as Instance-Specific Label Smoothing},
booktitle = {Advances in Neural Information Processing Systems 33: Annual Conference
on Neural Information Processing Systems 2020, NeurIPS 2020, December
6-12, 2020, virtual},
year = {2020},
url = {https://proceedings.neurips.cc/paper/2020/hash/1731592aca5fb4d789c4119c65c10b4b-Abstract.html},
timestamp = {Tue, 19 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/nips/ZhangS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2002-12470,
author = {Hang Zhang and
Jinwei Zhang and
Qihao Zhang and
Jeremy Kim and
Shun Zhang and
Susan A. Gauthier and
Pascal Spincemaille and
Thanh D. Nguyen and
Mert R. Sabuncu and
Yi Wang},
title = {RSANet: Recurrent Slice-wise Attention Network for Multiple Sclerosis
Lesion Segmentation},
journal = {CoRR},
volume = {abs/2002.12470},
year = {2020},
url = {https://arxiv.org/abs/2002.12470},
eprinttype = {arXiv},
eprint = {2002.12470},
timestamp = {Tue, 03 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2002-12470.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2003-01639,
author = {Tianyu Ma and
Ajay Gupta and
Mert R. Sabuncu},
title = {Volumetric landmark detection with a multi-scale shift equivariant
neural network},
journal = {CoRR},
volume = {abs/2003.01639},
year = {2020},
url = {https://arxiv.org/abs/2003.01639},
eprinttype = {arXiv},
eprint = {2003.01639},
timestamp = {Tue, 10 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2003-01639.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2004-13903,
author = {Evan M. Yu and
Juan Eugenio Iglesias and
Adrian V. Dalca and
Mert R. Sabuncu},
title = {An Auto-Encoder Strategy for Adaptive Image Segmentation},
journal = {CoRR},
volume = {abs/2004.13903},
year = {2020},
url = {https://arxiv.org/abs/2004.13903},
eprinttype = {arXiv},
eprint = {2004.13903},
timestamp = {Sun, 03 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2004-13903.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2006-00080,
author = {Qi Chang and
Hui Qu and
Yikai Zhang and
Mert R. Sabuncu and
Chao Chen and
Tong Zhang and
Dimitris N. Metaxas},
title = {Synthetic Learning: Learn From Distributed Asynchronized Discriminator
{GAN} Without Sharing Medical Image Data},
journal = {CoRR},
volume = {abs/2006.00080},
year = {2020},
url = {https://arxiv.org/abs/2006.00080},
eprinttype = {arXiv},
eprint = {2006.00080},
timestamp = {Thu, 17 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2006-00080.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2006-05065,
author = {Zhilu Zhang and
Mert R. Sabuncu},
title = {Self-Distillation as Instance-Specific Label Smoothing},
journal = {CoRR},
volume = {abs/2006.05065},
year = {2020},
url = {https://arxiv.org/abs/2006.05065},
eprinttype = {arXiv},
eprint = {2006.05065},
timestamp = {Fri, 12 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2006-05065.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2006-15802,
author = {Meenakshi Khosla and
Gia H. Ngo and
Keith Jamison and
Amy Kuceyeski and
Mert R. Sabuncu},
title = {A shared neural encoding model for the prediction of subject-specific
fMRI response},
journal = {CoRR},
volume = {abs/2006.15802},
year = {2020},
url = {https://arxiv.org/abs/2006.15802},
eprinttype = {arXiv},
eprint = {2006.15802},
timestamp = {Thu, 02 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2006-15802.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2007-14450,
author = {Jinwei Zhang and
Hang Zhang and
Alan Wang and
Qihao Zhang and
Mert R. Sabuncu and
Pascal Spincemaille and
Thanh D. Nguyen and
Yi Wang},
title = {Extending {LOUPE} for K-space Under-sampling Pattern Optimization
in Multi-coil {MRI}},
journal = {CoRR},
volume = {abs/2007.14450},
year = {2020},
url = {https://arxiv.org/abs/2007.14450},
eprinttype = {arXiv},
eprint = {2007.14450},
timestamp = {Tue, 03 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2007-14450.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2007-14979,
author = {Alan Q. Wang and
Adrian V. Dalca and
Mert R. Sabuncu},
title = {Neural Network-based Reconstruction in Compressed Sensing {MRI} Without
Fully-sampled Training Data},
journal = {CoRR},
volume = {abs/2007.14979},
year = {2020},
url = {https://arxiv.org/abs/2007.14979},
eprinttype = {arXiv},
eprint = {2007.14979},
timestamp = {Mon, 03 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2007-14979.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2007-15857,
author = {Yichen Shen and
Zhilu Zhang and
Mert R. Sabuncu and
Lin Sun},
title = {Learning the Distribution: {A} Unified Distillation Paradigm for Fast
Uncertainty Estimation in Computer Vision},
journal = {CoRR},
volume = {abs/2007.15857},
year = {2020},
url = {https://arxiv.org/abs/2007.15857},
eprinttype = {arXiv},
eprint = {2007.15857},
timestamp = {Mon, 03 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2007-15857.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2008-02961,
author = {Gia H. Ngo and
Meenakshi Khosla and
Keith Jamison and
Amy Kuceyeski and
Mert R. Sabuncu},
title = {From Connectomic to Task-evoked Fingerprints: Individualized Prediction
of Task Contrasts from Resting-state Functional Connectivity},
journal = {CoRR},
volume = {abs/2008.02961},
year = {2020},
url = {https://arxiv.org/abs/2008.02961},
eprinttype = {arXiv},
eprint = {2008.02961},
timestamp = {Fri, 14 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2008-02961.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2008-07496,
author = {Mert R. Sabuncu},
title = {Intelligence plays dice: Stochasticity is essential for machine learning},
journal = {CoRR},
volume = {abs/2008.07496},
year = {2020},
url = {https://arxiv.org/abs/2008.07496},
eprinttype = {arXiv},
eprint = {2008.07496},
timestamp = {Fri, 21 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2008-07496.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2010-00516,
author = {Meenakshi Khosla and
Gia H. Ngo and
Keith Jamison and
Amy Kuceyeski and
Mert R. Sabuncu},
title = {Neural encoding with visual attention},
journal = {CoRR},
volume = {abs/2010.00516},
year = {2020},
url = {https://arxiv.org/abs/2010.00516},
eprinttype = {arXiv},
eprint = {2010.00516},
timestamp = {Mon, 12 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2010-00516.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2010-04757,
author = {Adrian V. Dalca and
Ramesh Sridharan and
Mert R. Sabuncu and
Polina Golland},
title = {Predictive Modeling of Anatomy with Genetic and Clinical Data},
journal = {CoRR},
volume = {abs/2010.04757},
year = {2020},
url = {https://arxiv.org/abs/2010.04757},
eprinttype = {arXiv},
eprint = {2010.04757},
timestamp = {Tue, 20 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2010-04757.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2010-08648,
author = {Tianyu Ma and
Hang Zhang and
Hanley Ong and
Amar Vora and
Thanh D. Nguyen and
Ajay Gupta and
Yi Wang and
Mert R. Sabuncu},
title = {Ensembling Low Precision Models for Binary Biomedical Image Segmentation},
journal = {CoRR},
volume = {abs/2010.08648},
year = {2020},
url = {https://arxiv.org/abs/2010.08648},
eprinttype = {arXiv},
eprint = {2010.08648},
timestamp = {Sat, 05 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2010-08648.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/aisy/LiuSALOMDSM19,
author = {Jun Liu and
Gurpreet Singh and
Subhi Al'Aref and
Benjamin C. Lee and
Olachi Oleru and
James K. Min and
Simon Dunham and
Mert R. Sabuncu and
Bobak Mosadegh},
title = {Image Registration in Medical Robotics and Intelligent Systems: Fundamentals
and Applications},
journal = {Adv. Intell. Syst.},
volume = {1},
number = {6},
pages = {1900048},
year = {2019},
url = {https://doi.org/10.1002/aisy.201900048},
doi = {10.1002/AISY.201900048},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/aisy/LiuSALOMDSM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/DalcaBGS19,
author = {Adrian V. Dalca and
Guha Balakrishnan and
John V. Guttag and
Mert R. Sabuncu},
title = {Unsupervised learning of probabilistic diffeomorphic registration
for images and surfaces},
journal = {Medical Image Anal.},
volume = {57},
pages = {226--236},
year = {2019},
url = {https://doi.org/10.1016/j.media.2019.07.006},
doi = {10.1016/J.MEDIA.2019.07.006},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/mia/DalcaBGS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/LiKLOTSHSGY19,
author = {Jingwei Li and
Ru Kong and
Rapha{\"{e}}l Li{\'{e}}geois and
Csaba Orban and
Yanrui Tan and
Nanbo Sun and
Avram J. Holmes and
Mert R. Sabuncu and
Tian Ge and
B. T. Thomas Yeo},
title = {Global signal regression strengthens association between resting-state
functional connectivity and behavior},
journal = {NeuroImage},
volume = {196},
pages = {126--141},
year = {2019},
url = {https://doi.org/10.1016/j.neuroimage.2019.04.016},
doi = {10.1016/J.NEUROIMAGE.2019.04.016},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/neuroimage/LiKLOTSHSGY19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/KhoslaJKS19,
author = {Meenakshi Khosla and
Keith Jamison and
Amy Kuceyeski and
Mert R. Sabuncu},
title = {Ensemble learning with 3D convolutional neural networks for functional
connectome-based prediction},
journal = {NeuroImage},
volume = {199},
pages = {651--662},
year = {2019},
url = {https://doi.org/10.1016/j.neuroimage.2019.06.012},
doi = {10.1016/J.NEUROIMAGE.2019.06.012},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/neuroimage/KhoslaJKS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/SunMCSYI19,
author = {Nanbo Sun and
Elizabeth C. Mormino and
Jianzhong Chen and
Mert R. Sabuncu and
B. T. Thomas Yeo and
Alzheimer's Disease Neuroimaging Initiative},
title = {Multi-modal latent factor exploration of atrophy, cognitive and tau
heterogeneity in Alzheimer's disease},
journal = {NeuroImage},
volume = {201},
year = {2019},
url = {https://doi.org/10.1016/j.neuroimage.2019.116043},
doi = {10.1016/J.NEUROIMAGE.2019.116043},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/neuroimage/SunMCSYI19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/DalcaBFRSG19,
author = {Adrian V. Dalca and
Katherine L. Bouman and
William T. Freeman and
Natalia S. Rost and
Mert R. Sabuncu and
Polina Golland},
title = {Medical Image Imputation From Image Collections},
journal = {{IEEE} Trans. Medical Imaging},
volume = {38},
number = {2},
pages = {504--514},
year = {2019},
url = {https://doi.org/10.1109/TMI.2018.2866692},
doi = {10.1109/TMI.2018.2866692},
timestamp = {Thu, 18 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tmi/DalcaBFRSG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/BalakrishnanZSG19,
author = {Guha Balakrishnan and
Amy Zhao and
Mert R. Sabuncu and
John V. Guttag and
Adrian V. Dalca},
title = {VoxelMorph: {A} Learning Framework for Deformable Medical Image Registration},
journal = {{IEEE} Trans. Medical Imaging},
volume = {38},
number = {8},
pages = {1788--1800},
year = {2019},
url = {https://doi.org/10.1109/TMI.2019.2897538},
doi = {10.1109/TMI.2019.2897538},
timestamp = {Thu, 18 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tmi/BalakrishnanZSG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipmi/BahadirDS19,
author = {Cagla Deniz Bahadir and
Adrian V. Dalca and
Mert R. Sabuncu},
editor = {Albert C. S. Chung and
James C. Gee and
Paul A. Yushkevich and
Siqi Bao},
title = {Learning-Based Optimization of the Under-Sampling Pattern in {MRI}},
booktitle = {Information Processing in Medical Imaging - 26th International Conference,
{IPMI} 2019, Hong Kong, China, June 2-7, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11492},
pages = {780--792},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-20351-1\_61},
doi = {10.1007/978-3-030-20351-1\_61},
timestamp = {Wed, 22 May 2019 11:15:35 +0200},
biburl = {https://dblp.org/rec/conf/ipmi/BahadirDS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/YuS19,
author = {Evan M. Yu and
Mert R. Sabuncu},
title = {A Convolutional Autoencoder Approach To Learn Volumetric Shape Representations
For Brain Structures},
booktitle = {16th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
2019, Venice, Italy, April 8-11, 2019},
pages = {1559--1562},
publisher = {{IEEE}},
year = {2019},
url = {https://doi.org/10.1109/ISBI.2019.8759231},
doi = {10.1109/ISBI.2019.8759231},
timestamp = {Wed, 04 Oct 2023 17:01:25 +0200},
biburl = {https://dblp.org/rec/conf/isbi/YuS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/ZhuGES19,
author = {Yingying Zhu and
Jodi M. Gilman and
Anne Eden Evins and
Mert R. Sabuncu},
editor = {Dinggang Shen and
Tianming Liu and
Terry M. Peters and
Lawrence H. Staib and
Caroline Essert and
Sean Zhou and
Pew{-}Thian Yap and
Ali R. Khan},
title = {Detecting Cannabis-Associated Cognitive Impairment Using Resting-State
fNIRS},
booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
2019 - 22nd International Conference, Shenzhen, China, October 13-17,
2019, Proceedings, Part {V}},
series = {Lecture Notes in Computer Science},
volume = {11768},
pages = {146--154},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-32254-0\_17},
doi = {10.1007/978-3-030-32254-0\_17},
timestamp = {Mon, 19 Feb 2024 14:24:13 +0100},
biburl = {https://dblp.org/rec/conf/miccai/ZhuGES19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/KhoslaJKS19,
author = {Meenakshi Khosla and
Keith Jamison and
Amy Kuceyeski and
Mert R. Sabuncu},
editor = {Heung{-}Il Suk and
Mingxia Liu and
Pingkun Yan and
Chunfeng Lian},
title = {Detecting Abnormalities in Resting-State Dynamics: An Unsupervised
Learning Approach},
booktitle = {Machine Learning in Medical Imaging - 10th International Workshop,
{MLMI} 2019, Held in Conjunction with {MICCAI} 2019, Shenzhen, China,
October 13, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11861},
pages = {301--309},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-32692-0\_35},
doi = {10.1007/978-3-030-32692-0\_35},
timestamp = {Tue, 18 Jan 2022 13:58:27 +0100},
biburl = {https://dblp.org/rec/conf/miccai/KhoslaJKS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/DalcaYGFSI19,
author = {Adrian V. Dalca and
Evan M. Yu and
Polina Golland and
Bruce Fischl and
Mert R. Sabuncu and
Juan Eugenio Iglesias},
editor = {Dinggang Shen and
Tianming Liu and
Terry M. Peters and
Lawrence H. Staib and
Caroline Essert and
Sean Zhou and
Pew{-}Thian Yap and
Ali R. Khan},
title = {Unsupervised Deep Learning for Bayesian Brain {MRI} Segmentation},
booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
2019 - 22nd International Conference, Shenzhen, China, October 13-17,
2019, Proceedings, Part {III}},
series = {Lecture Notes in Computer Science},
volume = {11766},
pages = {356--365},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-32248-9\_40},
doi = {10.1007/978-3-030-32248-9\_40},
timestamp = {Mon, 19 Feb 2024 14:24:13 +0100},
biburl = {https://dblp.org/rec/conf/miccai/DalcaYGFSI19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/ZhangZZKZGSNSW19,
author = {Hang Zhang and
Jinwei Zhang and
Qihao Zhang and
Jeremy Kim and
Shun Zhang and
Susan A. Gauthier and
Pascal Spincemaille and
Thanh D. Nguyen and
Mert R. Sabuncu and
Yi Wang},
editor = {Dinggang Shen and
Tianming Liu and
Terry M. Peters and
Lawrence H. Staib and
Caroline Essert and
Sean Zhou and
Pew{-}Thian Yap and
Ali R. Khan},
title = {RSANet: Recurrent Slice-Wise Attention Network for Multiple Sclerosis
Lesion Segmentation},
booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
2019 - 22nd International Conference, Shenzhen, China, October 13-17,
2019, Proceedings, Part {III}},
series = {Lecture Notes in Computer Science},
volume = {11766},
pages = {411--419},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-32248-9\_46},
doi = {10.1007/978-3-030-32248-9\_46},
timestamp = {Mon, 02 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/miccai/ZhangZZKZGSNSW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/DalcaRGS19,
author = {Adrian V. Dalca and
Marianne Rakic and
John V. Guttag and
Mert R. Sabuncu},
editor = {Hanna M. Wallach and
Hugo Larochelle and
Alina Beygelzimer and
Florence d'Alch{\'{e}}{-}Buc and
Emily B. Fox and
Roman Garnett},
title = {Learning Conditional Deformable Templates with Convolutional Networks},
booktitle = {Advances in Neural Information Processing Systems 32: Annual Conference
on Neural Information Processing Systems 2019, NeurIPS 2019, December
8-14, 2019, Vancouver, BC, Canada},
pages = {804--816},
year = {2019},
url = {https://proceedings.neurips.cc/paper/2019/hash/bbcbff5c1f1ded46c25d28119a85c6c2-Abstract.html},
timestamp = {Mon, 16 May 2022 15:41:51 +0200},
biburl = {https://dblp.org/rec/conf/nips/DalcaRGS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1901-01960,
author = {Cagla Deniz Bahadir and
Adrian V. Dalca and
Mert R. Sabuncu},
title = {Learning-based Optimization of the Under-sampling Pattern in {MRI}},
journal = {CoRR},
volume = {abs/1901.01960},
year = {2019},
url = {http://arxiv.org/abs/1901.01960},
eprinttype = {arXiv},
eprint = {1901.01960},
timestamp = {Sun, 03 Feb 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1901-01960.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1903-03148,
author = {Adrian V. Dalca and
John V. Guttag and
Mert R. Sabuncu},
title = {Anatomical Priors in Convolutional Networks for Unsupervised Biomedical
Segmentation},
journal = {CoRR},
volume = {abs/1903.03148},
year = {2019},
url = {http://arxiv.org/abs/1903.03148},
eprinttype = {arXiv},
eprint = {1903.03148},
timestamp = {Sun, 31 Mar 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1903-03148.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1903-03503,
author = {Adrian V. Dalca and
John V. Guttag and
Mert R. Sabuncu},
title = {Unsupervised Data Imputation via Variational Inference of Deep Subspaces},
journal = {CoRR},
volume = {abs/1903.03503},
year = {2019},
url = {http://arxiv.org/abs/1903.03503},
eprinttype = {arXiv},
eprint = {1903.03503},
timestamp = {Sun, 31 Mar 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1903-03503.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1903-03545,
author = {Adrian V. Dalca and
Guha Balakrishnan and
John V. Guttag and
Mert R. Sabuncu},
title = {Unsupervised Learning of Probabilistic Diffeomorphic Registration
for Images and Surfaces},
journal = {CoRR},
volume = {abs/1903.03545},
year = {2019},
url = {http://arxiv.org/abs/1903.03545},
eprinttype = {arXiv},
eprint = {1903.03545},
timestamp = {Sun, 31 Mar 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1903-03545.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1904-11319,
author = {Adrian V. Dalca and
Evan M. Yu and
Polina Golland and
Bruce Fischl and
Mert R. Sabuncu and
Juan Eugenio Iglesias},
title = {Unsupervised deep learning for Bayesian brain {MRI} segmentation},
journal = {CoRR},
volume = {abs/1904.11319},
year = {2019},
url = {http://arxiv.org/abs/1904.11319},
eprinttype = {arXiv},
eprint = {1904.11319},
timestamp = {Fri, 03 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1904-11319.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1906-09551,
author = {Zhilu Zhang and
Adrian V. Dalca and
Mert R. Sabuncu},
title = {Confidence Calibration for Convolutional Neural Networks Using Structured
Dropout},
journal = {CoRR},
volume = {abs/1906.09551},
year = {2019},
url = {http://arxiv.org/abs/1906.09551},
eprinttype = {arXiv},
eprint = {1906.09551},
timestamp = {Thu, 27 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1906-09551.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1907-11374,
author = {Cagla Deniz Bahadir and
Adrian V. Dalca and
Mert R. Sabuncu},
title = {Adaptive Compressed Sensing {MRI} with Unsupervised Learning},
journal = {CoRR},
volume = {abs/1907.11374},
year = {2019},
url = {http://arxiv.org/abs/1907.11374},
eprinttype = {arXiv},
eprint = {1907.11374},
timestamp = {Tue, 30 Jul 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1907-11374.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1908-02738,
author = {Adrian V. Dalca and
Marianne Rakic and
John V. Guttag and
Mert R. Sabuncu},
title = {Learning Conditional Deformable Templates with Convolutional Networks},
journal = {CoRR},
volume = {abs/1908.02738},
year = {2019},
url = {http://arxiv.org/abs/1908.02738},
eprinttype = {arXiv},
eprint = {1908.02738},
timestamp = {Fri, 09 Aug 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1908-02738.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1908-04466,
author = {Hyeon Woo Lee and
Mert R. Sabuncu and
Adrian V. Dalca},
title = {Few Labeled Atlases are Necessary for Deep-Learning-Based Segmentation},
journal = {CoRR},
volume = {abs/1908.04466},
year = {2019},
url = {http://arxiv.org/abs/1908.04466},
eprinttype = {arXiv},
eprint = {1908.04466},
timestamp = {Mon, 19 Aug 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1908-04466.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1908-06168,
author = {Meenakshi Khosla and
Keith Jamison and
Amy Kuceyeski and
Mert R. Sabuncu},
title = {Detecting abnormalities in resting-state dynamics: An unsupervised
learning approach},
journal = {CoRR},
volume = {abs/1908.06168},
year = {2019},
url = {http://arxiv.org/abs/1908.06168},
eprinttype = {arXiv},
eprint = {1908.06168},
timestamp = {Mon, 26 Aug 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1908-06168.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cvpr/BalakrishnanZSG18,
author = {Guha Balakrishnan and
Amy Zhao and
Mert R. Sabuncu and
John V. Guttag and
Adrian V. Dalca},
title = {An Unsupervised Learning Model for Deformable Medical Image Registration},
booktitle = {2018 {IEEE} Conference on Computer Vision and Pattern Recognition,
{CVPR} 2018, Salt Lake City, UT, USA, June 18-22, 2018},
pages = {9252--9260},
publisher = {Computer Vision Foundation / {IEEE} Computer Society},
year = {2018},
url = {http://openaccess.thecvf.com/content\_cvpr\_2018/html/Balakrishnan\_An\_Unsupervised\_Learning\_CVPR\_2018\_paper.html},
doi = {10.1109/CVPR.2018.00964},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cvpr/BalakrishnanZSG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cvpr/DalcaGS18,
author = {Adrian V. Dalca and
John V. Guttag and
Mert R. Sabuncu},
title = {Anatomical Priors in Convolutional Networks for Unsupervised Biomedical
Segmentation},
booktitle = {2018 {IEEE} Conference on Computer Vision and Pattern Recognition,
{CVPR} 2018, Salt Lake City, UT, USA, June 18-22, 2018},
pages = {9290--9299},
publisher = {Computer Vision Foundation / {IEEE} Computer Society},
year = {2018},
url = {http://openaccess.thecvf.com/content\_cvpr\_2018/html/Dalca\_Anatomical\_Priors\_in\_CVPR\_2018\_paper.html},
doi = {10.1109/CVPR.2018.00968},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cvpr/DalcaGS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/ZhuS18,
author = {Yingying Zhu and
Mert R. Sabuncu},
editor = {Danail Stoyanov and
Zeike Taylor and
Enzo Ferrante and
Adrian V. Dalca and
Anne L. Martel and
Lena Maier{-}Hein and
Sarah Parisot and
Aristeidis Sotiras and
Bartlomiej W. Papiez and
Mert R. Sabuncu and
Li Shen},
title = {A Bayesian Disease Progression Model for Clinical Trajectories},
booktitle = {Graphs in Biomedical Image Analysis - and - Integrating Medical Imaging
and Non-Imaging Modalities - Second International Workshop, {GRAIL}
2018 - and - First International Workshop, Beyond {MIC} 2018, Held
in Conjunction with {MICCAI} 2018, Granada, Spain, September 20, 2018,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11044},
pages = {57--65},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-030-00689-1\_6},
doi = {10.1007/978-3-030-00689-1\_6},
timestamp = {Thu, 16 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/miccai/ZhuS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/KhoslaJKS18,
author = {Meenakshi Khosla and
Keith Jamison and
Amy Kuceyeski and
Mert R. Sabuncu},
editor = {Danail Stoyanov and
Zeike Taylor and
Gustavo Carneiro and
Tanveer F. Syeda{-}Mahmood and
Anne L. Martel and
Lena Maier{-}Hein and
Jo{\~{a}}o Manuel R. S. Tavares and
Andrew P. Bradley and
Jo{\~{a}}o Paulo Papa and
Vasileios Belagiannis and
Jacinto C. Nascimento and
Zhi Lu and
Sailesh Conjeti and
Mehdi Moradi and
Hayit Greenspan and
Anant Madabhushi},
title = {3D Convolutional Neural Networks for Classification of Functional
Connectomes},
booktitle = {Deep Learning in Medical Image Analysis - and - Multimodal Learning
for Clinical Decision Support - 4th International Workshop, {DLMIA}
2018, and 8th International Workshop, {ML-CDS} 2018, Held in Conjunction
with {MICCAI} 2018, Granada, Spain, September 20, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11045},
pages = {137--145},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-030-00889-5\_16},
doi = {10.1007/978-3-030-00889-5\_16},
timestamp = {Tue, 18 Apr 2023 21:52:48 +0200},
biburl = {https://dblp.org/rec/conf/miccai/KhoslaJKS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/DalcaBGS18,
author = {Adrian V. Dalca and
Guha Balakrishnan and
John V. Guttag and
Mert R. Sabuncu},
editor = {Alejandro F. Frangi and
Julia A. Schnabel and
Christos Davatzikos and
Carlos Alberola{-}L{\'{o}}pez and
Gabor Fichtinger},
title = {Unsupervised Learning for Fast Probabilistic Diffeomorphic Registration},
booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
2018 - 21st International Conference, Granada, Spain, September 16-20,
2018, Proceedings, Part {I}},
series = {Lecture Notes in Computer Science},
volume = {11070},
pages = {729--738},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-030-00928-1\_82},
doi = {10.1007/978-3-030-00928-1\_82},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/miccai/DalcaBGS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/ZhangS18,
author = {Zhilu Zhang and
Mert R. Sabuncu},
editor = {Samy Bengio and
Hanna M. Wallach and
Hugo Larochelle and
Kristen Grauman and
Nicol{\`{o}} Cesa{-}Bianchi and
Roman Garnett},
title = {Generalized Cross Entropy Loss for Training Deep Neural Networks with
Noisy Labels},
booktitle = {Advances in Neural Information Processing Systems 31: Annual Conference
on Neural Information Processing Systems 2018, NeurIPS 2018, December
3-8, 2018, Montr{\'{e}}al, Canada},
pages = {8792--8802},
year = {2018},
url = {https://proceedings.neurips.cc/paper/2018/hash/f2925f97bc13ad2852a7a551802feea0-Abstract.html},
timestamp = {Mon, 16 May 2022 15:41:51 +0200},
biburl = {https://dblp.org/rec/conf/nips/ZhangS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/prni/HeKHSEBFY18,
author = {Tong He and
Ru Kong and
Avram J. Holmes and
Mert R. Sabuncu and
Simon B. Eickhoff and
Danilo Bzdok and
Jiashi Feng and
B. T. Thomas Yeo},
title = {Is deep learning better than kernel regression for functional connectivity
prediction of fluid intelligence?},
booktitle = {2018 International Workshop on Pattern Recognition in Neuroimaging,
{PRNI} 2018, Singapore, Singapore, June 12-14, 2018},
pages = {1--4},
publisher = {{IEEE}},
year = {2018},
url = {https://doi.org/10.1109/PRNI.2018.8423958},
doi = {10.1109/PRNI.2018.8423958},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/prni/HeKHSEBFY18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/miccai/2018grail,
editor = {Danail Stoyanov and
Zeike Taylor and
Enzo Ferrante and
Adrian V. Dalca and
Anne L. Martel and
Lena Maier{-}Hein and
Sarah Parisot and
Aristeidis Sotiras and
Bartlomiej W. Papiez and
Mert R. Sabuncu and
Li Shen},
title = {Graphs in Biomedical Image Analysis - and - Integrating Medical Imaging
and Non-Imaging Modalities - Second International Workshop, {GRAIL}
2018 - and - First International Workshop, Beyond {MIC} 2018, Held
in Conjunction with {MICCAI} 2018, Granada, Spain, September 20, 2018,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11044},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-030-00689-1},
doi = {10.1007/978-3-030-00689-1},
isbn = {978-3-030-00688-4},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/miccai/2018grail.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1801-00880,
author = {Mohammad Haft{-}Javaherian and
Linjing Fang and
Victorine P. Muse and
Chris B. Schaffer and
Nozomi Nishimura and
Mert R. Sabuncu},
title = {Deep convolutional neural networks for segmenting 3D in vivo multiphoton
images of vasculature in Alzheimer disease mouse models},
journal = {CoRR},
volume = {abs/1801.00880},
year = {2018},
url = {http://arxiv.org/abs/1801.00880},
eprinttype = {arXiv},
eprint = {1801.00880},
timestamp = {Sun, 17 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1801-00880.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1802-02604,
author = {Guha Balakrishnan and
Amy Zhao and
Mert R. Sabuncu and
John V. Guttag and
Adrian V. Dalca},
title = {An Unsupervised Learning Model for Deformable Medical Image Registration},
journal = {CoRR},
volume = {abs/1802.02604},
year = {2018},
url = {http://arxiv.org/abs/1802.02604},
eprinttype = {arXiv},
eprint = {1802.02604},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1802-02604.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1803-05011,
author = {Yingying Zhu and
Mert R. Sabuncu},
title = {A Probabilistic Disease Progression Model for Predicting Future Clinical
Outcome},
journal = {CoRR},
volume = {abs/1803.05011},
year = {2018},
url = {http://arxiv.org/abs/1803.05011},
eprinttype = {arXiv},
eprint = {1803.05011},
timestamp = {Thu, 16 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1803-05011.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1805-04605,
author = {Adrian V. Dalca and
Guha Balakrishnan and
John V. Guttag and
Mert R. Sabuncu},
title = {Unsupervised Learning for Fast Probabilistic Diffeomorphic Registration},
journal = {CoRR},
volume = {abs/1805.04605},
year = {2018},
url = {http://arxiv.org/abs/1805.04605},
eprinttype = {arXiv},
eprint = {1805.04605},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1805-04605.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1805-07836,
author = {Zhilu Zhang and
Mert R. Sabuncu},
title = {Generalized Cross Entropy Loss for Training Deep Neural Networks with
Noisy Labels},
journal = {CoRR},
volume = {abs/1805.07836},
year = {2018},
url = {http://arxiv.org/abs/1805.07836},
eprinttype = {arXiv},
eprint = {1805.07836},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1805-07836.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1806-04209,
author = {Meenakshi Khosla and
Keith Jamison and
Amy Kuceyeski and
Mert R. Sabuncu},
title = {3D Convolutional Neural Networks for Classification of Functional
Connectomes},
journal = {CoRR},
volume = {abs/1806.04209},
year = {2018},
url = {http://arxiv.org/abs/1806.04209},
eprinttype = {arXiv},
eprint = {1806.04209},
timestamp = {Tue, 18 Sep 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1806-04209.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1808-05732,
author = {Adrian V. Dalca and
Katherine L. Bouman and
William T. Freeman and
Natalia S. Rost and
Mert R. Sabuncu and
Polina Golland},
title = {Medical Image Imputation from Image Collections},
journal = {CoRR},
volume = {abs/1808.05732},
year = {2018},
url = {http://arxiv.org/abs/1808.05732},
eprinttype = {arXiv},
eprint = {1808.05732},
timestamp = {Sun, 02 Sep 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1808-05732.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1809-05231,
author = {Guha Balakrishnan and
Amy Zhao and
Mert R. Sabuncu and
John V. Guttag and
Adrian V. Dalca},
title = {VoxelMorph: {A} Learning Framework for Deformable Medical Image Registration},
journal = {CoRR},
volume = {abs/1809.05231},
year = {2018},
url = {http://arxiv.org/abs/1809.05231},
eprinttype = {arXiv},
eprint = {1809.05231},
timestamp = {Fri, 05 Oct 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1809-05231.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1809-06219,
author = {Meenakshi Khosla and
Keith Jamison and
Amy Kuceyeski and
Mert R. Sabuncu},
title = {Ensemble learning with 3D convolutional neural networks for connectome-based
prediction},
journal = {CoRR},
volume = {abs/1809.06219},
year = {2018},
url = {http://arxiv.org/abs/1809.06219},
eprinttype = {arXiv},
eprint = {1809.06219},
timestamp = {Fri, 05 Oct 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1809-06219.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1810-07746,
author = {Evan M. Yu and
Mert R. Sabuncu},
title = {A Convolutional Autoencoder Approach to Learn Volumetric Shape Representations
for Brain Structures},
journal = {CoRR},
volume = {abs/1810.07746},
year = {2018},
url = {http://arxiv.org/abs/1810.07746},
eprinttype = {arXiv},
eprint = {1810.07746},
timestamp = {Tue, 30 Oct 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1810-07746.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1812-11477,
author = {Meenakshi Khosla and
Keith Jamison and
Gia H. Ngo and
Amy Kuceyeski and
Mert R. Sabuncu},
title = {Machine learning in resting-state fMRI analysis},
journal = {CoRR},
volume = {abs/1812.11477},
year = {2018},
url = {http://arxiv.org/abs/1812.11477},
eprinttype = {arXiv},
eprint = {1812.11477},
timestamp = {Wed, 02 Jan 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1812-11477.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cars/OurselinSWJUM17,
author = {S{\'{e}}bastien Ourselin and
Mert R. Sabuncu and
William M. Wells III and
Leo Joskowicz and
G{\"{o}}zde B. {\"{U}}nal and
Andreas K. Maier},
title = {Guest editorial of the {IJCARS} {MICCAI} 2016 special issue},
journal = {Int. J. Comput. Assist. Radiol. Surg.},
volume = {12},
number = {8},
pages = {1243--1244},
year = {2017},
url = {https://doi.org/10.1007/s11548-017-1642-1},
doi = {10.1007/S11548-017-1642-1},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/cars/OurselinSWJUM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/OurselinSWJUM17,
author = {S{\'{e}}bastien Ourselin and
Mert R. Sabuncu and
William M. Wells III and
Leo Joskowicz and
G{\"{o}}zde B. {\"{U}}nal and
Andreas K. Maier},
title = {The 19th International Conference on Medical Image Computing and Computer-Assisted
Intervention {(MICCAI} 2016)},
journal = {Medical Image Anal.},
volume = {41},
pages = {1},
year = {2017},
url = {https://doi.org/10.1016/j.media.2017.06.012},
doi = {10.1016/J.MEDIA.2017.06.012},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/mia/OurselinSWJUM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/AganjI0SF17,
author = {Iman Aganj and
Juan Eugenio Iglesias and
Martin Reuter and
Mert Rory Sabuncu and
Bruce Fischl},
title = {Mid-space-independent deformable image registration},
journal = {NeuroImage},
volume = {152},
pages = {158--170},
year = {2017},
url = {https://doi.org/10.1016/j.neuroimage.2017.02.055},
doi = {10.1016/J.NEUROIMAGE.2017.02.055},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/neuroimage/AganjI0SF17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/NenningLGSSL17,
author = {Karl{-}Heinz Nenning and
Hesheng Liu and
Satrajit S. Ghosh and
Mert R. Sabuncu and
Ernst Schwartz and
Georg Langs},
title = {Diffeomorphic functional brain surface alignment: Functional demons},
journal = {NeuroImage},
volume = {156},
pages = {456--465},
year = {2017},
url = {https://doi.org/10.1016/j.neuroimage.2017.04.028},
doi = {10.1016/J.NEUROIMAGE.2017.04.028},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/neuroimage/NenningLGSSL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipmi/DalcaBFRSG17,
author = {Adrian V. Dalca and
Katherine L. Bouman and
William T. Freeman and
Natalia S. Rost and
Mert R. Sabuncu and
Polina Golland},
editor = {Marc Niethammer and
Martin Styner and
Stephen R. Aylward and
Hongtu Zhu and
Ipek Oguz and
Pew{-}Thian Yap and
Dinggang Shen},
title = {Population Based Image Imputation},
booktitle = {Information Processing in Medical Imaging - 25th International Conference,
{IPMI} 2017, Boone, NC, USA, June 25-30, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10265},
pages = {659--671},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-59050-9\_52},
doi = {10.1007/978-3-319-59050-9\_52},
timestamp = {Tue, 14 May 2019 10:00:52 +0200},
biburl = {https://dblp.org/rec/conf/ipmi/DalcaBFRSG17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/miccai/2017grail,
editor = {M. Jorge Cardoso and
Tal Arbel and
Enzo Ferrante and
Xavier Pennec and
Adrian V. Dalca and
Sarah Parisot and
Sarang C. Joshi and
Nematollah Kayhan Batmanghelich and
Aristeidis Sotiras and
Mads Nielsen and
Mert R. Sabuncu and
Tom Fletcher and
Li Shen and
Stanley Durrleman and
Stefan Sommer},
title = {Graphs in Biomedical Image Analysis, Computational Anatomy and Imaging
Genetics - First International Workshop, {GRAIL} 2017, 6th International
Workshop, {MFCA} 2017, and Third International Workshop, MICGen 2017,
Held in Conjunction with {MICCAI} 2017, Qu{\'{e}}bec City, QC,
Canada, September 10-14, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10551},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-67675-3},
doi = {10.1007/978-3-319-67675-3},
isbn = {978-3-319-67674-6},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/miccai/2017grail.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/miccai/2016-1,
editor = {S{\'{e}}bastien Ourselin and
Leo Joskowicz and
Mert R. Sabuncu and
G{\"{o}}zde B. {\"{U}}nal and
William M. Wells III},
title = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
2016 - 19th International Conference, Athens, Greece, October 17-21,
2016, Proceedings, Part {I}},
series = {Lecture Notes in Computer Science},
volume = {9900},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-46720-7},
doi = {10.1007/978-3-319-46720-7},
isbn = {978-3-319-46719-1},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/miccai/2016-1.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/miccai/2016-2,
editor = {S{\'{e}}bastien Ourselin and
Leo Joskowicz and
Mert R. Sabuncu and
G{\"{o}}zde B. {\"{U}}nal and
William M. Wells III},
title = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
2016 - 19th International Conference, Athens, Greece, October 17-21,
2016, Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {9901},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-46723-8},
doi = {10.1007/978-3-319-46723-8},
isbn = {978-3-319-46722-1},
timestamp = {Fri, 08 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/miccai/2016-2.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/miccai/2016-3,
editor = {S{\'{e}}bastien Ourselin and
Leo Joskowicz and
Mert R. Sabuncu and
G{\"{o}}zde B. {\"{U}}nal and
William M. Wells III},
title = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
2016 - 19th International Conference, Athens, Greece, October 17-21,
2016, Proceedings, Part {III}},
series = {Lecture Notes in Computer Science},
volume = {9902},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-46726-9},
doi = {10.1007/978-3-319-46726-9},
isbn = {978-3-319-46725-2},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/miccai/2016-3.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/IglesiasS15,
author = {Juan Eugenio Iglesias and
Mert R. Sabuncu},
title = {Multi-atlas segmentation of biomedical images: {A} survey},
journal = {Medical Image Anal.},
volume = {24},
number = {1},
pages = {205--219},
year = {2015},
url = {https://doi.org/10.1016/j.media.2015.06.012},
doi = {10.1016/J.MEDIA.2015.06.012},
timestamp = {Mon, 24 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/mia/IglesiasS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/AganjRSF15,
author = {Iman Aganj and
Martin Reuter and
Mert R. Sabuncu and
Bruce Fischl},
title = {Avoiding symmetry-breaking spatial non-uniformity in deformable image
registration via a quasi-volume-preserving constraint},
journal = {NeuroImage},
volume = {106},
pages = {238--251},
year = {2015},
url = {https://doi.org/10.1016/j.neuroimage.2014.10.059},
doi = {10.1016/J.NEUROIMAGE.2014.10.059},
timestamp = {Fri, 30 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/neuroimage/AganjRSF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/IglesiasSABCSBF15,
author = {Juan Eugenio Iglesias and
Mert Rory Sabuncu and
Iman Aganj and
Priyanka Bhatt and
Christen Casillas and
David H. Salat and
Adam L. Boxer and
Bruce Fischl and
Koen Van Leemput},
title = {An algorithm for optimal fusion of atlases with different labeling
protocols},
journal = {NeuroImage},
volume = {106},
pages = {451--463},
year = {2015},
url = {https://doi.org/10.1016/j.neuroimage.2014.11.031},
doi = {10.1016/J.NEUROIMAGE.2014.11.031},
timestamp = {Tue, 04 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/neuroimage/IglesiasSABCSBF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/SabuncuBRGF15,
author = {Mert R. Sabuncu and
Jorge L. Bernal{-}Rusiel and
Martin Reuter and
Douglas N. Greve and
Bruce Fischl},
title = {Corrigendum to "Event time analysis of longitudinal neuroimage
data" [NeuroImage 97 {(15} August 2014) 9-18]},
journal = {NeuroImage},
volume = {108},
pages = {74},
year = {2015},
url = {https://doi.org/10.1016/j.neuroimage.2014.12.051},
doi = {10.1016/J.NEUROIMAGE.2014.12.051},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/neuroimage/SabuncuBRGF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/Bernal-RusielGR15,
author = {Jorge L. Bernal{-}Rusiel and
Douglas N. Greve and
Martin Reuter and
Bruce Fischl and
Mert R. Sabuncu},
title = {Corrigendum to "Statistical analysis of longitudinal neuroimage
data with Linear Mixed Effects models" [NeuroImage 66 {(1} February
2013) 249-260]},
journal = {NeuroImage},
volume = {108},
pages = {110},
year = {2015},
url = {https://doi.org/10.1016/j.neuroimage.2014.12.053},
doi = {10.1016/J.NEUROIMAGE.2014.12.053},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/neuroimage/Bernal-RusielGR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/Bernal-RusielRG15,
author = {Jorge L. Bernal{-}Rusiel and
Martin Reuter and
Douglas N. Greve and
Bruce Fischl and
Mert R. Sabuncu},
title = {Corrigendum to "Spatiotemporal linear mixed effects modeling
for the mass-univariate analysis of longitudinal neuroimage data"
[NeuroImage 81 {(1} November 2013) 358-370]},
journal = {NeuroImage},
volume = {108},
pages = {123},
year = {2015},
url = {https://doi.org/10.1016/j.neuroimage.2014.12.052},
doi = {10.1016/J.NEUROIMAGE.2014.12.052},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/neuroimage/Bernal-RusielRG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/GeNGMSS15,
author = {Tian Ge and
Thomas E. Nichols and
Debashis Ghosh and
Elizabeth C. Mormino and
Jordan W. Smoller and
Mert R. Sabuncu},
title = {A kernel machine method for detecting effects of interaction between
multidimensional variable sets: An imaging genetics application},
journal = {NeuroImage},
volume = {109},
pages = {505--514},
year = {2015},
url = {https://doi.org/10.1016/j.neuroimage.2015.01.029},
doi = {10.1016/J.NEUROIMAGE.2015.01.029},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/neuroimage/GeNGMSS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ni/SabuncuK15,
author = {Mert R. Sabuncu and
Ender Konukoglu},
title = {Clinical Prediction from Structural Brain {MRI} Scans: {A} Large-Scale
Empirical Study},
journal = {Neuroinformatics},
volume = {13},
number = {1},
pages = {31--46},
year = {2015},
url = {https://doi.org/10.1007/s12021-014-9238-1},
doi = {10.1007/S12021-014-9238-1},
timestamp = {Fri, 30 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ni/SabuncuK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/AganjIRSF15,
author = {Iman Aganj and
Juan Eugenio Iglesias and
Martin Reuter and
Mert R. Sabuncu and
Bruce Fischl},
editor = {Nassir Navab and
Joachim Hornegger and
William M. Wells III and
Alejandro F. Frangi},
title = {Mid-Space-Independent Symmetric Data Term for Pairwise Deformable
Image Registration},
booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
2015 - 18th International Conference Munich, Germany, October 5-9,
2015, Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {9350},
pages = {263--271},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-24571-3\_32},
doi = {10.1007/978-3-319-24571-3\_32},
timestamp = {Mon, 03 Jan 2022 22:36:38 +0100},
biburl = {https://dblp.org/rec/conf/miccai/AganjIRSF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/Sabuncu15,
author = {Mert R. Sabuncu},
editor = {Nassir Navab and
Joachim Hornegger and
William M. Wells III and
Alejandro F. Frangi},
title = {A Sparse Bayesian Learning Algorithm for Longitudinal Image Data},
booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
2015 - 18th International Conference Munich, Germany, October 5 -
9, 2015, Proceedings, Part {III}},
series = {Lecture Notes in Computer Science},
volume = {9351},
pages = {411--418},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-24574-4\_49},
doi = {10.1007/978-3-319-24574-4\_49},
timestamp = {Mon, 03 Jan 2022 22:36:27 +0100},
biburl = {https://dblp.org/rec/conf/miccai/Sabuncu15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/DalcaSSG15,
author = {Adrian V. Dalca and
Ramesh Sridharan and
Mert R. Sabuncu and
Polina Golland},
editor = {Nassir Navab and
Joachim Hornegger and
William M. Wells III and
Alejandro F. Frangi},
title = {Predictive Modeling of Anatomy with Genetic and Clinical Data},
booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
2015 - 18th International Conference Munich, Germany, October 5 -
9, 2015, Proceedings, Part {III}},
series = {Lecture Notes in Computer Science},
volume = {9351},
pages = {519--526},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-24574-4\_62},
doi = {10.1007/978-3-319-24574-4\_62},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/miccai/DalcaSSG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/SabuncuBRGF14,
author = {Mert R. Sabuncu and
Jorge L. Bernal{-}Rusiel and
Martin Reuter and
Douglas N. Greve and
Bruce Fischl},
title = {Event time analysis of longitudinal neuroimage data},
journal = {NeuroImage},
volume = {97},
pages = {9--18},
year = {2014},
url = {https://doi.org/10.1016/j.neuroimage.2014.04.015},
doi = {10.1016/J.NEUROIMAGE.2014.04.015},
timestamp = {Fri, 30 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/neuroimage/SabuncuBRGF14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/Sabuncu14,
author = {Mert R. Sabuncu},
editor = {Polina Golland and
Nobuhiko Hata and
Christian Barillot and
Joachim Hornegger and
Robert D. Howe},
title = {A Universal and Efficient Method to Compute Maps from Image-Based
Prediction Models},
booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
2014 - 17th International Conference, Boston, MA, USA, September 14-18,
2014, Proceedings, Part {III}},
series = {Lecture Notes in Computer Science},
volume = {8675},
pages = {353--360},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-10443-0\_45},
doi = {10.1007/978-3-319-10443-0\_45},
timestamp = {Tue, 01 Jun 2021 15:22:56 +0200},
biburl = {https://dblp.org/rec/conf/miccai/Sabuncu14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/LeemputS14,
author = {Koenraad Van Leemput and
Mert R. Sabuncu},
editor = {Polina Golland and
Nobuhiko Hata and
Christian Barillot and
Joachim Hornegger and
Robert D. Howe},
title = {A Cautionary Analysis of {STAPLE} Using Direct Inference of Segmentation
Truth},
booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
2014 - 17th International Conference, Boston, MA, USA, September 14-18,
2014, Proceedings, Part {I}},
series = {Lecture Notes in Computer Science},
volume = {8673},
pages = {398--406},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-10404-1\_50},
doi = {10.1007/978-3-319-10404-1\_50},
timestamp = {Thu, 31 Oct 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/miccai/LeemputS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/DalcaSCFKFRWSRG14,
author = {Adrian Vasile Dalca and
Ramesh Sridharan and
Lisa Cloonan and
Kaitlin M. Fitzpatrick and
Allison Kanakis and
Karen L. Furie and
Jonathan Rosand and
Ona Wu and
Mert R. Sabuncu and
Natalia S. Rost and
Polina Golland},
editor = {Polina Golland and
Nobuhiko Hata and
Christian Barillot and
Joachim Hornegger and
Robert D. Howe},
title = {Segmentation of Cerebrovascular Pathologies in Stroke Patients with
Spatial and Shape Priors},
booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
2014 - 17th International Conference, Boston, MA, USA, September 14-18,
2014, Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {8674},
pages = {773--780},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-10470-6\_96},
doi = {10.1007/978-3-319-10470-6\_96},
timestamp = {Thu, 31 Oct 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/miccai/DalcaSCFKFRWSRG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/IglesiasS14,
author = {Juan Eugenio Iglesias and
Mert Rory Sabuncu},
title = {Multi-Atlas Segmentation of Biomedical Images: {A} Survey},
journal = {CoRR},
volume = {abs/1412.3421},
year = {2014},
url = {http://arxiv.org/abs/1412.3421},
eprinttype = {arXiv},
eprint = {1412.3421},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/IglesiasS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jocn/GreveHCSSFB13,
author = {Douglas N. Greve and
Lise Van der Haegen and
Qing Cai and
Steven M. Stufflebeam and
Mert R. Sabuncu and
Bruce Fischl and
Marc Brysbaert},
title = {A Surface-based Analysis of Language Lateralization and Cortical Asymmetry},
journal = {J. Cogn. Neurosci.},
volume = {25},
number = {9},
pages = {1477--1492},
year = {2013},
url = {https://doi.org/10.1162/jocn\_a\_00405},
doi = {10.1162/JOCN\_A\_00405},
timestamp = {Thu, 18 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jocn/GreveHCSSFB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/IglesiasSL13,
author = {Juan Eugenio Iglesias and
Mert R. Sabuncu and
Koen Van Leemput},
title = {Improved inference in Bayesian segmentation using Monte Carlo sampling:
Application to hippocampal subfield volumetry},
journal = {Medical Image Anal.},
volume = {17},
number = {7},
pages = {766--778},
year = {2013},
url = {https://doi.org/10.1016/j.media.2013.04.005},
doi = {10.1016/J.MEDIA.2013.04.005},
timestamp = {Mon, 24 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/mia/IglesiasSL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/IglesiasSL13a,
author = {Juan Eugenio Iglesias and
Mert Rory Sabuncu and
Koen Van Leemput},
title = {A unified framework for cross-modality multi-atlas segmentation of
brain {MRI}},
journal = {Medical Image Anal.},
volume = {17},
number = {8},
pages = {1181--1191},
year = {2013},
url = {https://doi.org/10.1016/j.media.2013.08.001},
doi = {10.1016/J.MEDIA.2013.08.001},
timestamp = {Mon, 24 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/mia/IglesiasSL13a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/Bernal-RusielGRFS13,
author = {Jorge L. Bernal{-}Rusiel and
Douglas N. Greve and
Martin Reuter and
Bruce Fischl and
Mert R. Sabuncu},
title = {Statistical analysis of longitudinal neuroimage data with Linear Mixed
Effects models},
journal = {NeuroImage},
volume = {66},
pages = {249--260},
year = {2013},
url = {https://doi.org/10.1016/j.neuroimage.2012.10.065},
doi = {10.1016/J.NEUROIMAGE.2012.10.065},
timestamp = {Fri, 30 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/neuroimage/Bernal-RusielGRFS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/Bernal-RusielRGFS13,
author = {Jorge L. Bernal{-}Rusiel and
Martin Reuter and
Douglas N. Greve and
Bruce Fischl and
Mert R. Sabuncu},
title = {Spatiotemporal linear mixed effects modeling for the mass-univariate
analysis of longitudinal neuroimage data},
journal = {NeuroImage},
volume = {81},
pages = {358--370},
year = {2013},
url = {https://doi.org/10.1016/j.neuroimage.2013.05.049},
doi = {10.1016/J.NEUROIMAGE.2013.05.049},
timestamp = {Fri, 30 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/neuroimage/Bernal-RusielRGFS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tip/AganjYSF13,
author = {Iman Aganj and
B. T. Thomas Yeo and
Mert R. Sabuncu and
Bruce Fischl},
title = {On Removing Interpolation and Resampling Artifacts in Rigid Image
Registration},
journal = {{IEEE} Trans. Image Process.},
volume = {22},
number = {2},
pages = {816--827},
year = {2013},
url = {https://doi.org/10.1109/TIP.2012.2224356},
doi = {10.1109/TIP.2012.2224356},
timestamp = {Sun, 10 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tip/AganjYSF13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipmi/BatmanghelichDSG13,
author = {Nematollah Batmanghelich and
Adrian V. Dalca and
Mert R. Sabuncu and
Polina Golland},
editor = {James C. Gee and
Sarang C. Joshi and
Kilian M. Pohl and
William M. Wells III and
Lilla Z{\"{o}}llei},
title = {Joint Modeling of Imaging and Genetics},
booktitle = {Information Processing in Medical Imaging - 23rd International Conference,
{IPMI} 2013, Asilomar, CA, USA, June 28-July 3, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7917},
pages = {766--777},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-38868-2\_64},
doi = {10.1007/978-3-642-38868-2\_64},
timestamp = {Tue, 14 May 2019 10:00:52 +0200},
biburl = {https://dblp.org/rec/conf/ipmi/BatmanghelichDSG13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/AganjRSF13,
author = {Iman Aganj and
Martin Reuter and
Mert R. Sabuncu and
Bruce Fischl},
title = {Symmetric non-rigid image registration via an adaptive quasi-volume-preserving
constraint},
booktitle = {10th {IEEE} International Symposium on Biomedical Imaging: From Nano
to Macro, {ISBI} 2013, 7-11 April, 2013, San Francisco, CA, USA, Proceedings},
pages = {230--233},
publisher = {{IEEE}},
year = {2013},
url = {https://doi.org/10.1109/ISBI.2013.6556454},
doi = {10.1109/ISBI.2013.6556454},
timestamp = {Wed, 04 Oct 2023 17:01:25 +0200},
biburl = {https://dblp.org/rec/conf/isbi/AganjRSF13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/Sabuncu13,
author = {Mert R. Sabuncu},
editor = {Guorong Wu and
Daoqiang Zhang and
Dinggang Shen and
Pingkun Yan and
Kenji Suzuki and
Fei Wang},
title = {A Bayesian Algorithm for Image-Based Time-to-Event Prediction},
booktitle = {Machine Learning in Medical Imaging - 4th International Workshop,
{MLMI} 2013, Held in Conjunction with {MICCAI} 2013, Nagoya, Japan,
September 22, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8184},
pages = {74--81},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-319-02267-3\_10},
doi = {10.1007/978-3-319-02267-3\_10},
timestamp = {Sat, 05 Sep 2020 18:06:04 +0200},
biburl = {https://dblp.org/rec/conf/miccai/Sabuncu13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/KonukogluKSF13,
author = {Ender Konukoglu and
Andr{\'{e}} J. W. van der Kouwe and
Mert Rory Sabuncu and
Bruce Fischl},
editor = {Kensaku Mori and
Ichiro Sakuma and
Yoshinobu Sato and
Christian Barillot and
Nassir Navab},
title = {Example-Based Restoration of High-Resolution Magnetic Resonance Image
Acquisitions},
booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
2013 - 16th International Conference, Nagoya, Japan, September 22-26,
2013, Proceedings, Part {I}},
series = {Lecture Notes in Computer Science},
volume = {8149},
pages = {131--138},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-40811-3\_17},
doi = {10.1007/978-3-642-40811-3\_17},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/miccai/KonukogluKSF13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/GanzSL13,
author = {Melanie Ganz and
Mert R. Sabuncu and
Koen Van Leemput},
editor = {Guorong Wu and
Daoqiang Zhang and
Dinggang Shen and
Pingkun Yan and
Kenji Suzuki and
Fei Wang},
title = {An Improved Optimization Method for the Relevance Voxel Machine},
booktitle = {Machine Learning in Medical Imaging - 4th International Workshop,
{MLMI} 2013, Held in Conjunction with {MICCAI} 2013, Nagoya, Japan,
September 22, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8184},
pages = {147--154},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-319-02267-3\_19},
doi = {10.1007/978-3-319-02267-3\_19},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/miccai/GanzSL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/KonukogluGLS13,
author = {Ender Konukoglu and
Melanie Ganz and
Koen Van Leemput and
Mert R. Sabuncu},
editor = {Guorong Wu and
Daoqiang Zhang and
Dinggang Shen and
Pingkun Yan and
Kenji Suzuki and
Fei Wang},
title = {On Feature Relevance in Image-Based Prediction Models: An Empirical
Study},
booktitle = {Machine Learning in Medical Imaging - 4th International Workshop,
{MLMI} 2013, Held in Conjunction with {MICCAI} 2013, Nagoya, Japan,
September 22, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8184},
pages = {171--178},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-319-02267-3\_22},
doi = {10.1007/978-3-319-02267-3\_22},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/miccai/KonukogluGLS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/IglesiasSL13,
author = {Juan Eugenio Iglesias and
Mert R. Sabuncu and
Koen Van Leemput},
editor = {Kensaku Mori and
Ichiro Sakuma and
Yoshinobu Sato and
Christian Barillot and
Nassir Navab},
title = {A Probabilistic, Non-parametric Framework for Inter-modality Label
Fusion},
booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
2013 - 16th International Conference, Nagoya, Japan, September 22-26,
2013, Proceedings, Part {III}},
series = {Lecture Notes in Computer Science},
volume = {8151},
pages = {576--583},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-40760-4\_72},
doi = {10.1007/978-3-642-40760-4\_72},
timestamp = {Mon, 16 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/miccai/IglesiasSL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/DijkSB12,
author = {Koene R. A. Van Dijk and
Mert R. Sabuncu and
Randy L. Buckner},
title = {The influence of head motion on intrinsic functional connectivity
{MRI}},
journal = {NeuroImage},
volume = {59},
number = {1},
pages = {431--438},
year = {2012},
url = {https://doi.org/10.1016/j.neuroimage.2011.07.044},
doi = {10.1016/J.NEUROIMAGE.2011.07.044},
timestamp = {Fri, 30 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/neuroimage/DijkSB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/WinklerSYFGKNBG12,
author = {Anderson M. Winkler and
Mert R. Sabuncu and
B. T. Thomas Yeo and
Bruce Fischl and
Douglas N. Greve and
Peter V. Kochunov and
Thomas E. Nichols and
John Blangero and
David C. Glahn},
title = {Measuring and comparing brain cortical surface area and other areal
quantities},
journal = {NeuroImage},
volume = {61},
number = {4},
pages = {1428--1443},
year = {2012},
url = {https://doi.org/10.1016/j.neuroimage.2012.03.026},
doi = {10.1016/J.NEUROIMAGE.2012.03.026},
timestamp = {Fri, 30 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/neuroimage/WinklerSYFGKNBG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/SabuncuL12,
author = {Mert R. Sabuncu and
Koen Van Leemput},
title = {The Relevance Voxel Machine (RVoxM): {A} Self-Tuning Bayesian Model
for Informative Image-Based Prediction},
journal = {{IEEE} Trans. Medical Imaging},
volume = {31},
number = {12},
pages = {2290--2306},
year = {2012},
url = {https://doi.org/10.1109/TMI.2012.2216543},
doi = {10.1109/TMI.2012.2216543},
timestamp = {Thu, 18 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tmi/SabuncuL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/IglesiasSL12,
author = {Juan Eugenio Iglesias and
Mert R. Sabuncu and
Koen Van Leemput},
title = {A generative model for multi-atlas segmentation across modalities},
booktitle = {9th {IEEE} International Symposium on Biomedical Imaging: From Nano
to Macro, {ISBI} 2012, May 2-5, 2012, Barcelona, Spain, Proceedings},
pages = {888--891},
publisher = {{IEEE}},
year = {2012},
url = {https://doi.org/10.1109/ISBI.2012.6235691},
doi = {10.1109/ISBI.2012.6235691},
timestamp = {Wed, 16 Oct 2019 14:14:52 +0200},
biburl = {https://dblp.org/rec/conf/isbi/IglesiasSL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/IglesiasSL12a,
author = {Juan Eugenio Iglesias and
Mert R. Sabuncu and
Koen Van Leemput},
editor = {Nicholas Ayache and
Herv{\'{e}} Delingette and
Polina Golland and
Kensaku Mori},
title = {Incorporating Parameter Uncertainty in Bayesian Segmentation Models:
Application to Hippocampal Subfield Volumetry},
booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
2012 - 15th International Conference, Nice, France, October 1-5, 2012,
Proceedings, Part {III}},
series = {Lecture Notes in Computer Science},
volume = {7512},
pages = {50--57},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33454-2\_7},
doi = {10.1007/978-3-642-33454-2\_7},
timestamp = {Tue, 14 May 2019 10:00:49 +0200},
biburl = {https://dblp.org/rec/conf/miccai/IglesiasSL12a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/IglesiasSL12,
author = {Juan Eugenio Iglesias and
Mert R. Sabuncu and
Koen Van Leemput},
editor = {Pew{-}Thian Yap and
Tianming Liu and
Dinggang Shen and
Carl{-}Fredrik Westin and
Li Shen},
title = {A Generative Model for Probabilistic Label Fusion of Multimodal Data},
booktitle = {Multimodal Brain Image Analysis - Second International Workshop, {MBIA}
2012, Held in Conjunction with {MICCAI} 2012, Nice, France, October
1-5, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7509},
pages = {115--133},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33530-3\_10},
doi = {10.1007/978-3-642-33530-3\_10},
timestamp = {Mon, 19 Feb 2024 14:24:13 +0100},
biburl = {https://dblp.org/rec/conf/miccai/IglesiasSL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icassp/GollandS11,
author = {Polina Golland and
Mert R. Sabuncu},
title = {Modeling anatomical heterogeneity in populations},
booktitle = {Proceedings of the {IEEE} International Conference on Acoustics, Speech,
and Signal Processing, {ICASSP} 2011, May 22-27, 2011, Prague Congress
Center, Prague, Czech Republic},
pages = {5776--5779},
publisher = {{IEEE}},
year = {2011},
url = {https://doi.org/10.1109/ICASSP.2011.5947673},
doi = {10.1109/ICASSP.2011.5947673},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icassp/GollandS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/SabuncuL11,
author = {Mert R. Sabuncu and
Koen Van Leemput},
editor = {Gabor Fichtinger and
Anne L. Martel and
Terry M. Peters},
title = {The Relevance Voxel Machine (RVoxM): {A} Bayesian Method for Image-Based
Prediction},
booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
2011 - 14th International Conference, Toronto, Canada, September 18-22,
2011, Proceedings, Part {III}},
series = {Lecture Notes in Computer Science},
volume = {6893},
pages = {99--106},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-23626-6\_13},
doi = {10.1007/978-3-642-23626-6\_13},
timestamp = {Tue, 14 May 2019 10:00:50 +0200},
biburl = {https://dblp.org/rec/conf/miccai/SabuncuL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/YeoSVAFG10,
author = {B. T. Thomas Yeo and
Mert R. Sabuncu and
Tom Vercauteren and
Nicholas Ayache and
Bruce Fischl and
Polina Golland},
title = {Spherical Demons: Fast Diffeomorphic Landmark-Free Surface Registration},
journal = {{IEEE} Trans. Medical Imaging},
volume = {29},
number = {3},
pages = {650--668},
year = {2010},
url = {https://doi.org/10.1109/TMI.2009.2030797},
doi = {10.1109/TMI.2009.2030797},
timestamp = {Thu, 18 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tmi/YeoSVAFG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/YeoSVHAZGF10,
author = {B. T. Thomas Yeo and
Mert R. Sabuncu and
Tom Vercauteren and
Daphne J. Holt and
Katrin Amunts and
Karl Zilles and
Polina Golland and
Bruce Fischl},
title = {Learning Task-Optimal Registration Cost Functions for Localizing Cytoarchitecture
and Function in the Cerebral Cortex},
journal = {{IEEE} Trans. Medical Imaging},
volume = {29},
number = {7},
pages = {1424--1441},
year = {2010},
url = {https://doi.org/10.1109/TMI.2010.2049497},
doi = {10.1109/TMI.2010.2049497},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tmi/YeoSVHAZGF10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/SabuncuYLFG10,
author = {Mert R. Sabuncu and
B. T. Thomas Yeo and
Koenraad Van Leemput and
Bruce Fischl and
Polina Golland},
title = {A Generative Model for Image Segmentation Based on Label Fusion},
journal = {{IEEE} Trans. Medical Imaging},
volume = {29},
number = {10},
pages = {1714--1729},
year = {2010},
url = {https://doi.org/10.1109/TMI.2010.2050897},
doi = {10.1109/TMI.2010.2050897},
timestamp = {Thu, 18 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tmi/SabuncuYLFG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/DepaSHNSG10,
author = {Michal Depa and
Mert R. Sabuncu and
Godtfred Holmvang and
Reza Nezafat and
Ehud J. Schmidt and
Polina Golland},
editor = {Oscar Camara and
Mihaela Pop and
Kawal S. Rhode and
Maxime Sermesant and
Nic Smith and
Alistair A. Young},
title = {Robust Atlas-Based Segmentation of Highly Variable Anatomy: Left Atrium
Segmentation},
booktitle = {Statistical Atlases and Computational Models of the Heart, First International
Workshop, {STACOM} 2010, and Cardiac Electrophysiological Simulation
Challenge, {CESC} 2010, Held in Conjunction with {MICCAI} 2010, Beijing,
China, September 20, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6364},
pages = {85--94},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-15835-3\_9},
doi = {10.1007/978-3-642-15835-3\_9},
timestamp = {Thu, 16 Mar 2023 20:00:44 +0100},
biburl = {https://dblp.org/rec/conf/miccai/DepaSHNSG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijcv/ZiyanSGW09,
author = {Ulas Ziyan and
Mert R. Sabuncu and
W. Eric L. Grimson and
Carl{-}Fredrik Westin},
title = {Consistency Clustering: {A} Robust Algorithm for Group-wise Registration,
Segmentation and Automatic Atlas Construction in Diffusion {MRI}},
journal = {Int. J. Comput. Vis.},
volume = {85},
number = {3},
pages = {279--290},
year = {2009},
url = {https://doi.org/10.1007/s11263-009-0217-1},
doi = {10.1007/S11263-009-0217-1},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ijcv/ZiyanSGW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/SabuncuBSG09,
author = {Mert R. Sabuncu and
Serdar K. Balci and
Martha Elizabeth Shenton and
Polina Golland},
title = {Image-Driven Population Analysis Through Mixture Modeling},
journal = {{IEEE} Trans. Medical Imaging},
volume = {28},
number = {9},
pages = {1473--1487},
year = {2009},
url = {https://doi.org/10.1109/TMI.2009.2017942},
doi = {10.1109/TMI.2009.2017942},
timestamp = {Thu, 18 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tmi/SabuncuBSG09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipmi/PohlS09,
author = {Kilian M. Pohl and
Mert R. Sabuncu},
editor = {Jerry L. Prince and
Dzung L. Pham and
Kyle J. Myers},
title = {A Unified Framework for {MR} Based Disease Classification},
booktitle = {Information Processing in Medical Imaging, 21st International Conference,
{IPMI} 2009, Williamsburg, VA, USA, July 5-10, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5636},
pages = {300--313},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02498-6\_25},
doi = {10.1007/978-3-642-02498-6\_25},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ipmi/PohlS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/Sabuncu09,
author = {Mert R. Sabuncu},
title = {Image-Driven Population Analysis Through Mixture Modeling},
booktitle = {Proceedings of the 2009 {IEEE} International Symposium on Biomedical
Imaging: From Nano to Macro, Boston, MA, USA, June 28 - July 1, 2009},
pages = {825--825},
publisher = {{IEEE}},
year = {2009},
url = {https://doi.org/10.1109/ISBI.2009.5193178},
doi = {10.1109/ISBI.2009.5193178},
timestamp = {Wed, 04 Oct 2023 17:01:25 +0200},
biburl = {https://dblp.org/rec/conf/isbi/Sabuncu09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/SabuncuYLVG09,
author = {Mert R. Sabuncu and
B. T. Thomas Yeo and
Koen Van Leemput and
Tom Vercauteren and
Polina Golland},
editor = {Guang{-}Zhong Yang and
David J. Hawkes and
Daniel Rueckert and
J. Alison Noble and
Christopher J. Taylor},
title = {Asymmetric Image-Template Registration},
booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
2009, 12th International Conference, London, UK, September 20-24,
2009, Proceedings, Part {I}},
series = {Lecture Notes in Computer Science},
volume = {5761},
pages = {565--573},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04268-3\_70},
doi = {10.1007/978-3-642-04268-3\_70},
timestamp = {Sun, 02 Jun 2019 21:24:52 +0200},
biburl = {https://dblp.org/rec/conf/miccai/SabuncuYLVG09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/YeoSGF09,
author = {B. T. Thomas Yeo and
Mert R. Sabuncu and
Polina Golland and
Bruce Fischl},
editor = {Guang{-}Zhong Yang and
David J. Hawkes and
Daniel Rueckert and
J. Alison Noble and
Christopher J. Taylor},
title = {Task-Optimal Registration Cost Functions},
booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
2009, 12th International Conference, London, UK, September 20-24,
2009, Proceedings, Part {I}},
series = {Lecture Notes in Computer Science},
volume = {5761},
pages = {598--606},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04268-3\_74},
doi = {10.1007/978-3-642-04268-3\_74},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/miccai/YeoSGF09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/SabuncuYLFG09,
author = {Mert R. Sabuncu and
B. T. Thomas Yeo and
Koen Van Leemput and
Bruce Fischl and
Polina Golland},
editor = {Guang{-}Zhong Yang and
David J. Hawkes and
Daniel Rueckert and
J. Alison Noble and
Christopher J. Taylor},
title = {Supervised Nonparametric Image Parcellation},
booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
2009, 12th International Conference, London, UK, September 20-24,
2009, Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {5762},
pages = {1075--1083},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04271-3\_130},
doi = {10.1007/978-3-642-04271-3\_130},
timestamp = {Sat, 30 May 2020 20:06:20 +0200},
biburl = {https://dblp.org/rec/conf/miccai/SabuncuYLFG09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/YeoSDFG08,
author = {B. T. Thomas Yeo and
Mert R. Sabuncu and
Rahul Desikan and
Bruce Fischl and
Polina Golland},
title = {Effects of registration regularization and atlas sharpness on segmentation
accuracy},
journal = {Medical Image Anal.},
volume = {12},
number = {5},
pages = {603--615},
year = {2008},
url = {https://doi.org/10.1016/j.media.2008.06.005},
doi = {10.1016/J.MEDIA.2008.06.005},
timestamp = {Mon, 24 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/mia/YeoSDFG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tip/SabuncuR08,
author = {Mert R. Sabuncu and
Peter J. Ramadge},
title = {Using Spanning Graphs for Efficient Image Registration},
journal = {{IEEE} Trans. Image Process.},
volume = {17},
number = {5},
pages = {788--797},
year = {2008},
url = {https://doi.org/10.1109/TIP.2008.918951},
doi = {10.1109/TIP.2008.918951},
timestamp = {Sun, 10 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tip/SabuncuR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/SabuncuBG08,
author = {Mert R. Sabuncu and
Serdar K. Balci and
Polina Golland},
editor = {Dimitris N. Metaxas and
Leon Axel and
Gabor Fichtinger and
G{\'{a}}bor Sz{\'{e}}kely},
title = {Discovering Modes of an Image Population through Mixture Modeling},
booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
2008, 11th International Conference, New York, NY, USA, September
6-10, 2008, Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {5242},
pages = {381--389},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-85990-1\_46},
doi = {10.1007/978-3-540-85990-1\_46},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/miccai/SabuncuBG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/YeoSVAFG08,
author = {B. T. Thomas Yeo and
Mert R. Sabuncu and
Tom Vercauteren and
Nicholas Ayache and
Bruce Fischl and
Polina Golland},
editor = {Dimitris N. Metaxas and
Leon Axel and
Gabor Fichtinger and
G{\'{a}}bor Sz{\'{e}}kely},
title = {Spherical Demons: Fast Surface Registration},
booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
2008, 11th International Conference, New York, NY, USA, September
6-10, 2008, Proceedings, Part {I}},
series = {Lecture Notes in Computer Science},
volume = {5241},
pages = {745--753},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-85988-8\_89},
doi = {10.1007/978-3-540-85988-8\_89},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/miccai/YeoSVAFG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/DarknerSGPL08,
author = {Sune Darkner and
Mert R. Sabuncu and
Polina Golland and
Rasmus R. Paulsen and
Rasmus Larsen},
editor = {Dimitris N. Metaxas and
Leon Axel and
Gabor Fichtinger and
G{\'{a}}bor Sz{\'{e}}kely},
title = {Analysis of Surfaces Using Constrained Regression Models},
booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
2008, 11th International Conference, New York, NY, USA, September
6-10, 2008, Proceedings, Part {I}},
series = {Lecture Notes in Computer Science},
volume = {5241},
pages = {842--849},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-85988-8\_100},
doi = {10.1007/978-3-540-85988-8\_100},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/miccai/DarknerSGPL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccv/YeoSMAZGF07,
author = {B. T. Thomas Yeo and
Mert R. Sabuncu and
Hartmut Mohlberg and
Katrin Amunts and
Karl Zilles and
Polina Golland and
Bruce Fischl},
title = {What Data to Co-register for Computing Atlases},
booktitle = {{IEEE} 11th International Conference on Computer Vision, {ICCV} 2007,
Rio de Janeiro, Brazil, October 14-20, 2007},
pages = {1--8},
publisher = {{IEEE} Computer Society},
year = {2007},
url = {https://doi.org/10.1109/ICCV.2007.4409157},
doi = {10.1109/ICCV.2007.4409157},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iccv/YeoSMAZGF07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccv/ZiyanSGW07,
author = {Ulas Ziyan and
Mert R. Sabuncu and
W. Eric L. Grimson and
Carl{-}Fredrik Westin},
title = {A Robust Algorithm for Fiber-Bundle Atlas Construction},
booktitle = {{IEEE} 11th International Conference on Computer Vision, {ICCV} 2007,
Rio de Janeiro, Brazil, October 14-20, 2007},
pages = {1--8},
publisher = {{IEEE} Computer Society},
year = {2007},
url = {https://doi.org/10.1109/ICCV.2007.4409143},
doi = {10.1109/ICCV.2007.4409143},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iccv/ZiyanSGW07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/ZiyanSOW07,
author = {Ulas Ziyan and
Mert R. Sabuncu and
Lauren O'Donnell and
Carl{-}Fredrik Westin},
editor = {Nicholas Ayache and
S{\'{e}}bastien Ourselin and
Anthony J. Maeder},
title = {Nonlinear Registration of Diffusion {MR} Images Based on Fiber Bundles},
booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
2007, 10th International Conference, Brisbane, Australia, October
29 - November 2, 2007, Proceedings, Part {I}},
series = {Lecture Notes in Computer Science},
volume = {4791},
pages = {351--358},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-75757-3\_43},
doi = {10.1007/978-3-540-75757-3\_43},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/miccai/ZiyanSOW07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/YeoSDFG07,
author = {B. T. Thomas Yeo and
Mert R. Sabuncu and
Rahul Desikan and
Bruce Fischl and
Polina Golland},
editor = {Nicholas Ayache and
S{\'{e}}bastien Ourselin and
Anthony J. Maeder},
title = {Effects of Registration Regularization and Atlas Sharpness on Segmentation
Accuracy},
booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
2007, 10th International Conference, Brisbane, Australia, October
29 - November 2, 2007, Proceedings, Part {I}},
series = {Lecture Notes in Computer Science},
volume = {4791},
pages = {683--691},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-75757-3\_83},
doi = {10.1007/978-3-540-75757-3\_83},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/miccai/YeoSDFG07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eusipco/SabuncuR05,
author = {Mert Rory Sabuncu and
Peter J. Ramadge},
title = {Graph-theoretic image registration using prior examples},
booktitle = {13th European Signal Processing Conference, {EUSIPCO} 2005, Antalya,
Turkey, September 4-8, 2005},
pages = {1--4},
publisher = {{IEEE}},
year = {2005},
url = {https://ieeexplore.ieee.org/document/7078252/},
timestamp = {Mon, 09 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/eusipco/SabuncuR05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icassp/SabuncuR05,
author = {Mert R. Sabuncu and
Peter J. Ramadge},
title = {Gradient Based Optimization of an {EMST} Image Registration Function},
booktitle = {2005 {IEEE} International Conference on Acoustics, Speech, and Signal
Processing, {ICASSP} '05, Philadelphia, Pennsylvania, USA, March 18-23,
2005},
pages = {253--256},
publisher = {{IEEE}},
year = {2005},
url = {https://doi.org/10.1109/ICASSP.2005.1415389},
doi = {10.1109/ICASSP.2005.1415389},
timestamp = {Mon, 22 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icassp/SabuncuR05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icip/SabuncuR04,
author = {Mert R. Sabuncu and
Peter J. Ramadge},
title = {Fast alignment of digital images using a lower bound on an entropy
metric},
booktitle = {Proceedings of the 2004 International Conference on Image Processing,
{ICIP} 2004, Singapore, October 24-27, 2004},
pages = {1919--1922},
publisher = {{IEEE}},
year = {2004},
timestamp = {Wed, 16 Oct 2019 14:14:52 +0200},
biburl = {https://dblp.org/rec/conf/icip/SabuncuR04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wbir/SabuncuR03,
author = {Mert R. Sabuncu and
Peter J. Ramadge},
editor = {James C. Gee and
J. B. Antoine Maintz and
Michael W. Vannier},
title = {Spatial Information in Entropy-Based Image Registration},
booktitle = {Biomedical Image Registration, Second International Workshop, {WBIR}
2003, Philadelphia, PA, USA, June 23-24, 2003, Revised Papers},
series = {Lecture Notes in Computer Science},
volume = {2717},
pages = {132--141},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/978-3-540-39701-4\_14},
doi = {10.1007/978-3-540-39701-4\_14},
timestamp = {Tue, 14 May 2019 10:00:49 +0200},
biburl = {https://dblp.org/rec/conf/wbir/SabuncuR03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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