BibTeX records: Alexander Sczyrba

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@inproceedings{DBLP:conf/cordi/HoffmannMBBKTGE23,
  author       = {Nils Hoffmann and
                  Irena Maus and
                  Sebastian Beier and
                  Peter Belmann and
                  Jan Kr{\"{u}}ger and
                  Andreas Tauch and
                  Alexander Goesmann and
                  Roland Eils and
                  Peer Bork and
                  Oliver Kohlbacher and
                  Ursula Kummer and
                  Rolf Backofen and
                  Ivo Buchhalter and
                  Alexander Sczyrba},
  editor       = {York Sure{-}Vetter and
                  Carole A. Goble},
  title        = {Embedding the de.NBI Cloud in the National Research Data Infrastructure
                  Activities},
  booktitle    = {1st Conference on Research Data Infrastructure - Connecting Communities,
                  CoRDI 2023, Karlsruhe, Germany, September 12-14, 2023},
  publisher    = {{TIB} Open Publishing},
  year         = {2023},
  url          = {https://doi.org/10.52825/cordi.v1i.387},
  doi          = {10.52825/CORDI.V1I.387},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/cordi/HoffmannMBBKTGE23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cordi/SchimmlerABFKLM23,
  author       = {Sonja Schimmler and
                  Reinhard Altenh{\"{o}}ner and
                  Lars Bernard and
                  Juliane Fluck and
                  Axel Klinger and
                  S{\"{o}}ren Lorenz and
                  Brigitte Mathiak and
                  Bernhard Miller and
                  Raphael Ritz and
                  Thomas Sch{\"{o}}rner{-}Sadenius and
                  Alexander Sczyrba and
                  Regine Stein},
  editor       = {York Sure{-}Vetter and
                  Carole A. Goble},
  title        = {Base4NFDI - Basic Services for {NFDI} Creating NFDI-Wide Basic Services
                  in a World of Specific Domains},
  booktitle    = {1st Conference on Research Data Infrastructure - Connecting Communities,
                  CoRDI 2023, Karlsruhe, Germany, September 12-14, 2023},
  publisher    = {{TIB} Open Publishing},
  year         = {2023},
  url          = {https://doi.org/10.52825/cordi.v1i.336},
  doi          = {10.52825/CORDI.V1I.336},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/cordi/SchimmlerABFKLM23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MooreWGSKSD20,
  author       = {Marten Moore and
                  Corinna Wesemann and
                  Nikolaj Gossmann and
                  Arne Sahm and
                  Jan Kr{\"{u}}ger and
                  Alexander Sczyrba and
                  Karl{-}Josef Dietz},
  title        = {ConCysFind: a pipeline tool to predict conserved amino acids of protein
                  sequences across the plant kingdom},
  journal      = {{BMC} Bioinform.},
  volume       = {21},
  number       = {1},
  pages        = {490},
  year         = {2020},
  url          = {https://doi.org/10.1186/s12859-020-03749-2},
  doi          = {10.1186/S12859-020-03749-2},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/MooreWGSKSD20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/f1000research/BelmannFKPRPHLBGKPS19,
  author       = {Peter Belmann and
                  Bj{\"{o}}rn Fischer and
                  Jan Kr{\"{u}}ger and
                  Michal Proch{\'{a}}zka and
                  Helena Rasche and
                  Manuel Prinz and
                  Maximilian Hanussek and
                  Martin Lang and
                  Felix Bartusch and
                  Benjamin Gl{\"{a}}{\ss}le and
                  Jens Kr{\"{u}}ger and
                  Alfred P{\"{u}}hler and
                  Alexander Sczyrba},
  title        = {de.NBI Cloud federation through {ELIXIR} {AAI}},
  journal      = {F1000Research},
  volume       = {8},
  pages        = {842},
  year         = {2019},
  url          = {https://doi.org/10.12688/f1000research.19013.1},
  doi          = {10.12688/F1000RESEARCH.19013.1},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/f1000research/BelmannFKPRPHLBGKPS19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuangKS18,
  author       = {Liren Huang and
                  Jan Kr{\"{u}}ger and
                  Alexander Sczyrba},
  title        = {Analyzing large scale genomic data on the cloud with Sparkhit},
  journal      = {Bioinform.},
  volume       = {34},
  number       = {9},
  pages        = {1457--1465},
  year         = {2018},
  url          = {https://doi.org/10.1093/bioinformatics/btx808},
  doi          = {10.1093/BIOINFORMATICS/BTX808},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/HuangKS18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/f1000research/LindenPLBVKSBSNMN18,
  author       = {Mikael Linden and
                  Michal Proch{\'{a}}zka and
                  Ilkka Lappalainen and
                  Dominik Bucik and
                  Pavel Vyskocil and
                  Martin Kuba and
                  Sami Sil{\'{e}}n and
                  Peter Belmann and
                  Alexander Sczyrba and
                  Steven J. Newhouse and
                  Ludek Matyska and
                  Tommi H. Nyr{\"{o}}nen},
  title        = {Common {ELIXIR} Service for Researcher Authentication and Authorisation},
  journal      = {F1000Research},
  volume       = {7},
  pages        = {1199},
  year         = {2018},
  url          = {https://doi.org/10.12688/f1000research.15161.1},
  doi          = {10.12688/F1000RESEARCH.15161.1},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/f1000research/LindenPLBVKSBSNMN18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BremgesSWS16,
  author       = {Andreas Bremges and
                  Esther Singer and
                  Tanja Woyke and
                  Alexander Sczyrba},
  title        = {MeCorS: Metagenome-enabled error correction of single cell sequencing
                  reads},
  journal      = {Bioinform.},
  volume       = {32},
  number       = {14},
  pages        = {2199--2201},
  year         = {2016},
  url          = {https://doi.org/10.1093/bioinformatics/btw144},
  doi          = {10.1093/BIOINFORMATICS/BTW144},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BremgesSWS16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LuxKRMSWSH16,
  author       = {Markus Lux and
                  Jan Kr{\"{u}}ger and
                  Christian Rinke and
                  Irena Maus and
                  Andreas Schl{\"{u}}ter and
                  Tanja Woyke and
                  Alexander Sczyrba and
                  Barbara Hammer},
  title        = {acdc - Automated Contamination Detection and Confidence estimation
                  for single-cell genome data},
  journal      = {{BMC} Bioinform.},
  volume       = {17},
  pages        = {543:1--543:11},
  year         = {2016},
  url          = {https://doi.org/10.1186/s12859-016-1397-7},
  doi          = {10.1186/S12859-016-1397-7},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/LuxKRMSWSH16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ijcnn/LuxSH15,
  author       = {Markus Lux and
                  Alexander Sczyrba and
                  Barbara Hammer},
  title        = {Automatic discovery of metagenomic structure},
  booktitle    = {2015 International Joint Conference on Neural Networks, {IJCNN} 2015,
                  Killarney, Ireland, July 12-17, 2015},
  pages        = {1--8},
  publisher    = {{IEEE}},
  year         = {2015},
  url          = {https://doi.org/10.1109/IJCNN.2015.7280500},
  doi          = {10.1109/IJCNN.2015.7280500},
  timestamp    = {Fri, 27 Dec 2019 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ijcnn/LuxSH15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iv/GisbrechtHMS13,
  author       = {Andrej Gisbrecht and
                  Barbara Hammer and
                  Bassam Mokbel and
                  Alexander Sczyrba},
  editor       = {Ebad Banissi and
                  Hanane Azzag and
                  Mark W. McK. Bannatyne and
                  Stefan Bertschi and
                  Fatma Bouali and
                  Remo Burkhard and
                  John Counsell and
                  Alfredo Cuzzocrea and
                  Martin J. Eppler and
                  Barbara Hammer and
                  Mustapha Lebbah and
                  Francis T. Marchese and
                  Muhammad Sarfraz and
                  Anna Ursyn and
                  Gilles Venturini and
                  Theodor G. Wyeld},
  title        = {Nonlinear Dimensionality Reduction for Cluster Identification in Metagenomic
                  Samples},
  booktitle    = {17th International Conference on Information Visualisation, {IV} 2013,
                  London, United Kingdom, July 16-18, 2013},
  pages        = {174--179},
  publisher    = {{IEEE} Computer Society},
  year         = {2013},
  url          = {https://doi.org/10.1109/IV.2013.22},
  doi          = {10.1109/IV.2013.22},
  timestamp    = {Fri, 24 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/iv/GisbrechtHMS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/El-KaliobyAKGSWT12,
  author       = {Mohamed El{-}Kalioby and
                  Mohamed Abouelhoda and
                  Jan Kr{\"{u}}ger and
                  Robert Giegerich and
                  Alexander Sczyrba and
                  Dennis P. Wall and
                  Peter J. Tonellato},
  title        = {Personalized cloud-based bioinformatics services for research and
                  education: use cases and the elasticHPC package},
  journal      = {{BMC} Bioinform.},
  volume       = {13},
  number       = {{S-17}},
  pages        = {S22},
  year         = {2012},
  url          = {https://doi.org/10.1186/1471-2105-13-S17-S22},
  doi          = {10.1186/1471-2105-13-S17-S22},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/El-KaliobyAKGSWT12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/SczyrbaKG08,
  author       = {Alexander Sczyrba and
                  Susanne Konermann and
                  Robert Giegerich},
  title        = {Two interactive Bioinformatics courses at the Bielefeld University
                  Bioinformatics Server},
  journal      = {Briefings Bioinform.},
  volume       = {9},
  number       = {3},
  pages        = {243--249},
  year         = {2008},
  url          = {https://doi.org/10.1093/bib/bbm063},
  doi          = {10.1093/BIB/BBM063},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/SczyrbaKG08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LamprechtMSSHG08,
  author       = {Anna{-}Lena Lamprecht and
                  Tiziana Margaria and
                  Bernhard Steffen and
                  Alexander Sczyrba and
                  Sven Hartmeier and
                  Robert Giegerich},
  title        = {GeneFisher-P: variations of GeneFisher as processes in Bio-jETI},
  journal      = {{BMC} Bioinform.},
  volume       = {9},
  number       = {{S-4}},
  year         = {2008},
  url          = {https://doi.org/10.1186/1471-2105-9-S4-S13},
  doi          = {10.1186/1471-2105-9-S4-S13},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/LamprechtMSSHG08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SpitzerLCSF06,
  author       = {Michael Spitzer and
                  Stefan Lorkowski and
                  Paul Cullen and
                  Alexander Sczyrba and
                  Georg Fuellen},
  title        = {IsoSVM - Distinguishing isoforms and paralogs on the protein level},
  journal      = {{BMC} Bioinform.},
  volume       = {7},
  pages        = {110},
  year         = {2006},
  url          = {https://doi.org/10.1186/1471-2105-7-110},
  doi          = {10.1186/1471-2105-7-110},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/SpitzerLCSF06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/BeckstetteMMSOGS04,
  author       = {Michael Beckstette and
                  Jens T. Mail{\"{a}}nder and
                  Richard J. Marh{\"{o}}fer and
                  Alexander Sczyrba and
                  Enno Ohlebusch and
                  Robert Giegerich and
                  Paul M. Selzer},
  title        = {Genlight: Interactive high-throughput sequence analysis and comparative
                  genomics},
  journal      = {J. Integr. Bioinform.},
  volume       = {1},
  number       = {1},
  year         = {2004},
  url          = {https://doi.org/10.2390/biecoll-jib-2004-8},
  doi          = {10.2390/BIECOLL-JIB-2004-8},
  timestamp    = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jib/BeckstetteMMSOGS04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KrugerSKG04,
  author       = {Jan Kr{\"{u}}ger and
                  Alexander Sczyrba and
                  Stefan Kurtz and
                  Robert Giegerich},
  title        = {e2g: an interactive web-based server for efficiently mapping large
                  {EST} and cDNA sets to genomic sequences},
  journal      = {Nucleic Acids Res.},
  volume       = {32},
  number       = {Web-Server-Issue},
  pages        = {301--304},
  year         = {2004},
  url          = {https://doi.org/10.1093/nar/gkh478},
  doi          = {10.1093/NAR/GKH478},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/KrugerSKG04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/TaherRGSM04,
  author       = {Leila Taher and
                  Oliver Rinner and
                  Saurabh Garg and
                  Alexander Sczyrba and
                  Burkhard Morgenstern},
  title        = {AGenDA: gene prediction by cross-species sequence comparison},
  journal      = {Nucleic Acids Res.},
  volume       = {32},
  number       = {Web-Server-Issue},
  pages        = {305--308},
  year         = {2004},
  url          = {https://doi.org/10.1093/nar/gkh386},
  doi          = {10.1093/NAR/GKH386},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/TaherRGSM04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/BeckstetteSS04,
  author       = {Michael Beckstette and
                  Alexander Sczyrba and
                  Paul M. Selzer},
  editor       = {Robert Giegerich and
                  Jens Stoye},
  title        = {Genlight: An Interactive System for High-throughput Sequence Analysis
                  and Comparative Genomics},
  booktitle    = {Proceedings of the German Conference on Bioinformatics {(GCB} 2004),
                  Bielefeld, Germany, October 4-6, 2004},
  series       = {{LNI}},
  volume       = {{P-53}},
  pages        = {179--185},
  publisher    = {{GI}},
  year         = {2004},
  url          = {https://dl.gi.de/handle/20.500.12116/28664},
  timestamp    = {Tue, 04 Jul 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/gcb/BeckstetteSS04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MorgensternGSD03,
  author       = {Burkhard Morgenstern and
                  Sachin Goel and
                  Alexander Sczyrba and
                  Andreas W. M. Dress},
  title        = {AltAVisT: Comparing alternative multiple sequence alignments},
  journal      = {Bioinform.},
  volume       = {19},
  number       = {3},
  pages        = {425--426},
  year         = {2003},
  url          = {https://doi.org/10.1093/bioinformatics/btf882},
  doi          = {10.1093/BIOINFORMATICS/BTF882},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MorgensternGSD03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TaherRGSBBM03,
  author       = {Leila Taher and
                  Oliver Rinner and
                  Saurabh Garg and
                  Alexander Sczyrba and
                  Michael Brudno and
                  Serafim Batzoglou and
                  Burkhard Morgenstern},
  title        = {AGenDA: homology-based gene prediction},
  journal      = {Bioinform.},
  volume       = {19},
  number       = {12},
  pages        = {1575--1577},
  year         = {2003},
  url          = {https://doi.org/10.1093/bioinformatics/btg181},
  doi          = {10.1093/BIOINFORMATICS/BTG181},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/TaherRGSBBM03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SczyrbaKMKG03,
  author       = {Alexander Sczyrba and
                  Jan Kr{\"{u}}ger and
                  Henning Mersch and
                  Stefan Kurtz and
                  Robert Giegerich},
  title        = {RNA-related tools on the Bielefeld Bioinformatics Server},
  journal      = {Nucleic Acids Res.},
  volume       = {31},
  number       = {13},
  pages        = {3767--3770},
  year         = {2003},
  url          = {https://doi.org/10.1093/nar/gkg576},
  doi          = {10.1093/NAR/GKG576},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/SczyrbaKMKG03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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