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ORCIDBibTeX records: Ilya Shmulevich
@article{DBLP:journals/ncs/LaubenbacherMST24,
author = {Reinhard C. Laubenbacher and
Borna Mehrad and
Ilya Shmulevich and
Natalia A. Trayanova},
title = {Digital twins in medicine},
journal = {Nat. Comput. Sci.},
volume = {4},
number = {3},
pages = {184--191},
year = {2024},
url = {https://doi.org/10.1038/s43588-024-00607-6},
doi = {10.1038/S43588-024-00607-6},
timestamp = {Mon, 15 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ncs/LaubenbacherMST24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/entropy/EchlinAS23,
author = {Moriah Echlin and
Boris Aguilar and
Ilya Shmulevich},
title = {Characterizing the Impact of Communication on Cellular and Collective
Behavior Using a Three-Dimensional Multiscale Cellular Model},
journal = {Entropy},
volume = {25},
number = {2},
pages = {319},
year = {2023},
url = {https://doi.org/10.3390/e25020319},
doi = {10.3390/E25020319},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/entropy/EchlinAS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fdgth/StahlbergAAABBBCCCDDGGHHJKLMMMMRR22,
author = {Eric A. Stahlberg and
Mohamed Abdel{-}Rahman and
Boris Aguilar and
Alireza Asadpoure and
Robert A. Beckman and
Lynn L. Borkon and
Jeffrey N. Bryan and
Colleen M. Cebulla and
Young Hwan Chang and
Ansu Chatterjee and
Jun Deng and
Sepideh Dolatshahi and
Olivier Gevaert and
Emily J. Greenspan and
Wenrui Hao and
Tina Hernandez{-}Boussard and
Pamela R. Jackson and
Marieke L. Kuijjer and
Adrian Lee and
Paul Macklin and
Subha Madhavan and
Matthew D. McCoy and
Navid Mohammad Mirzaei and
Talayeh Razzaghi and
Heber L. Rocha and
Leili Shahriyari and
Ilya Shmulevich and
Daniel G. Stover and
Yi Sun and
Tanveer F. Syeda{-}Mahmood and
Jinhua Wang and
Qi Wang and
Ioannis K. Zervantonakis},
title = {Exploring approaches for predictive cancer patient digital twins:
Opportunities for collaboration and innovation},
journal = {Frontiers Digit. Health},
volume = {4},
year = {2022},
url = {https://doi.org/10.3389/fdgth.2022.1007784},
doi = {10.3389/FDGTH.2022.1007784},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/fdgth/StahlbergAAABBBCCCDDGGHHJKLMMMMRR22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/entropy/EchlinANGS18,
author = {Moriah Echlin and
Boris Aguilar and
Max Notarangelo and
David L. Gibbs and
Ilya Shmulevich},
title = {Flexibility of Boolean Network Reservoir Computers in Approximating
Arbitrary Recursive and Non-Recursive Binary Filters},
journal = {Entropy},
volume = {20},
number = {12},
pages = {954},
year = {2018},
url = {https://doi.org/10.3390/e20120954},
doi = {10.3390/E20120954},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/entropy/EchlinANGS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/YangJWSC17,
author = {Hsih{-}te Yang and
Jiun{-}Huang Ju and
Yue{-}Ting Wong and
Ilya Shmulevich and
Jung{-}Hsien Chiang},
title = {Literature-based discovery of new candidates for drug repurposing},
journal = {Briefings Bioinform.},
volume = {18},
number = {3},
pages = {488--497},
year = {2017},
url = {https://doi.org/10.1093/bib/bbw030},
doi = {10.1093/BIB/BBW030},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/YangJWSC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/PooleLSKB17,
author = {William Poole and
Kalle Leinonen and
Ilya Shmulevich and
Theo A. Knijnenburg and
Brady Bernard},
title = {Multiscale mutation clustering algorithm identifies pan-cancer mutational
clusters associated with pathway-level changes in gene expression},
journal = {PLoS Comput. Biol.},
volume = {13},
number = {2},
year = {2017},
url = {https://doi.org/10.1371/journal.pcbi.1005347},
doi = {10.1371/JOURNAL.PCBI.1005347},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/PooleLSKB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/GibbsS17,
author = {David L. Gibbs and
Ilya Shmulevich},
title = {Solving the influence maximization problem reveals regulatory organization
of the yeast cell cycle},
journal = {PLoS Comput. Biol.},
volume = {13},
number = {6},
year = {2017},
url = {https://doi.org/10.1371/journal.pcbi.1005591},
doi = {10.1371/JOURNAL.PCBI.1005591},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/GibbsS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PooleGSBK16,
author = {William Poole and
David L. Gibbs and
Ilya Shmulevich and
Brady Bernard and
Theo A. Knijnenburg},
title = {Combining dependent \emph{P-}values with an empirical adaptation of
Brown's method},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {430--436},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw438},
doi = {10.1093/BIOINFORMATICS/BTW438},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PooleGSBK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eusipco/SarbuSYNK15,
author = {Septimia S{\^{a}}rbu and
Ilya Shmulevich and
Olli Yli{-}Harja and
Matti Nykter and
Juha Kesseli},
title = {Mapping dynamical states to structural classes for Boolean networks
using a classification algorithm},
booktitle = {23rd European Signal Processing Conference, {EUSIPCO} 2015, Nice,
France, August 31 - September 4, 2015},
pages = {160--164},
publisher = {{IEEE}},
year = {2015},
url = {https://doi.org/10.1109/EUSIPCO.2015.7362365},
doi = {10.1109/EUSIPCO.2015.7362365},
timestamp = {Thu, 01 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/eusipco/SarbuSYNK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KangKMFS14,
author = {Seunghwa Kang and
Simon Kahan and
Jason E. McDermott and
Nicholas S. Flann and
Ilya Shmulevich},
title = {\emph{Biocellion}: accelerating computer simulation of multicellular
biological system models},
journal = {Bioinform.},
volume = {30},
number = {21},
pages = {3101--3108},
year = {2014},
url = {https://doi.org/10.1093/bioinformatics/btu498},
doi = {10.1093/BIOINFORMATICS/BTU498},
timestamp = {Tue, 03 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KangKMFS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ejbsb/BresslerLERKRKBS12,
author = {Ryan Bressler and
Jake Lin and
Andrea Eakin and
Thomas Robinson and
Richard Kreisberg and
Hector Rovira and
Theo A. Knijnenburg and
John Boyle and
Ilya Shmulevich},
title = {Fastbreak: a tool for analysis and visualization of structural variations
in genomic data},
journal = {{EURASIP} J. Bioinform. Syst. Biol.},
volume = {2012},
pages = {15},
year = {2012},
url = {https://doi.org/10.1186/1687-4153-2012-15},
doi = {10.1186/1687-4153-2012-15},
timestamp = {Thu, 18 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ejbsb/BresslerLERKRKBS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KnijnenburgLRBS11,
author = {Theo A. Knijnenburg and
Jake Lin and
Hector Rovira and
John Boyle and
Ilya Shmulevich},
title = {{EPEPT:} {A} web service for enhanced P-value estimation in permutation
tests},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {411},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-411},
doi = {10.1186/1471-2105-12-411},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KnijnenburgLRBS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/RatushnySA11,
author = {Alexander V. Ratushny and
Ilya Shmulevich and
John D. Aitchison},
title = {Trade-off between Responsiveness and Noise Suppression in Biomolecular
System Responses to Environmental Cues},
journal = {PLoS Comput. Biol.},
volume = {7},
number = {6},
year = {2011},
url = {https://doi.org/10.1371/journal.pcbi.1002091},
doi = {10.1371/JOURNAL.PCBI.1002091},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/RatushnySA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@book{DBLP:books/daglib/0024105,
author = {Ilya Shmulevich and
Edward R. Dougherty},
title = {Probabilistic Boolean Networks - The Modeling and Control of Gene
Regulatory Networks},
publisher = {{SIAM}},
year = {2010},
url = {https://doi.org/10.1137/1.9780898717631},
doi = {10.1137/1.9780898717631},
isbn = {978-0-89871-692-4},
timestamp = {Tue, 16 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/books/daglib/0024105.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RamseyKKZGGJLLNSAS10,
author = {Stephen A. Ramsey and
Theo A. Knijnenburg and
Kathleen A. Kennedy and
Daniel E. Zak and
Mark Gilchrist and
Elizabeth S. Gold and
Carrie D. Johnson and
Aaron E. Lampano and
Vladimir Litvak and
Garnet Navarro and
Tetyana Stolyar and
Alan Aderem and
Ilya Shmulevich},
title = {Genome-wide histone acetylation data improve prediction of mammalian
transcription factor binding sites},
journal = {Bioinform.},
volume = {26},
number = {17},
pages = {2071--2075},
year = {2010},
url = {https://doi.org/10.1093/bioinformatics/btq405},
doi = {10.1093/BIOINFORMATICS/BTQ405},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RamseyKKZGGJLLNSAS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ErkkilaLRVSL10,
author = {Timo Erkkil{\"{a}} and
Saara Lehmusvaara and
Pekka Ruusuvuori and
Tapio Visakorpi and
Ilya Shmulevich and
Harri L{\"{a}}hdesm{\"{a}}ki},
title = {Probabilistic analysis of gene expression measurements from heterogeneous
tissues},
journal = {Bioinform.},
volume = {26},
number = {20},
pages = {2571--2577},
year = {2010},
url = {https://doi.org/10.1093/bioinformatics/btq406},
doi = {10.1093/BIOINFORMATICS/BTQ406},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ErkkilaLRVSL10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BurdickCHKLMRRBSB10,
author = {David B. Burdick and
Christopher C. Cavnor and
Jeremy Handcock and
Sarah A. Killcoyne and
Jake Lin and
Bruz Marzolf and
Stephen A. Ramsey and
Hector Rovira and
Ryan Bressler and
Ilya Shmulevich and
John Boyle},
title = {{SEQADAPT:} an adaptable system for the tracking, storage and analysis
of high throughput sequencing experiments},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {377},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-377},
doi = {10.1186/1471-2105-11-377},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BurdickCHKLMRRBSB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tit/MilenkovicABCHMPRSS10,
author = {Olgica Milenkovic and
Gil Alterovitz and
Gerard Battail and
Todd P. Coleman and
Joachim Hagenauer and
Sean P. Meyn and
Nathan D. Price and
Marco Ramoni and
Ilya Shmulevich and
Wojciech Szpankowski},
title = {Introduction to the special issue on information theory in molecular
biology and neuroscience},
journal = {{IEEE} Trans. Inf. Theory},
volume = {56},
number = {2},
pages = {649--652},
year = {2010},
url = {https://doi.org/10.1109/TIT.2009.2036971},
doi = {10.1109/TIT.2009.2036971},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tit/MilenkovicABCHMPRSS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tit/GalasNCPS10,
author = {David J. Galas and
Matti Nykter and
Gregory W. Carter and
Nathan D. Price and
Ilya Shmulevich},
title = {Biological information as set-based complexity},
journal = {{IEEE} Trans. Inf. Theory},
volume = {56},
number = {2},
pages = {667--677},
year = {2010},
url = {https://doi.org/10.1109/TIT.2009.2037046},
doi = {10.1109/TIT.2009.2037046},
timestamp = {Thu, 03 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tit/GalasNCPS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cloudcom/LewisRROKSB10,
author = {Steven Lewis and
Sheila Reynolds and
Hector Rovira and
Mike O'Leary and
Sarah A. Killcoyne and
Ilya Shmulevich and
John Boyle},
title = {Howdah - {A} Flexible Pipeline Framework for Analyzing Genomic Data},
booktitle = {Cloud Computing, Second International Conference, CloudCom 2010, November
30 - December 3, 2010, Indianapolis, Indiana, USA, Proceedings},
pages = {776--779},
publisher = {{IEEE} Computer Society},
year = {2010},
url = {https://doi.org/10.1109/CloudCom.2010.75},
doi = {10.1109/CLOUDCOM.2010.75},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cloudcom/LewisRROKSB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dils/RoviraKSB10,
author = {Hector Rovira and
Sarah A. Killcoyne and
Ilya Shmulevich and
John Boyle},
editor = {Patrick Lambrix and
Graham J. L. Kemp},
title = {An Integration Architecture Designed to Deal with the Issues of Biological
Scope, Scale and Complexity},
booktitle = {Data Integration in the Life Sciences, 7th International Conference,
{DILS} 2010, Gothenburg, Sweden, August 25-27, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6254},
pages = {179--191},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-15120-0\_14},
doi = {10.1007/978-3-642-15120-0\_14},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/dils/RoviraKSB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KnijnenburgWRS09,
author = {Theo A. Knijnenburg and
Lodewyk F. A. Wessels and
Marcel J. T. Reinders and
Ilya Shmulevich},
title = {Fewer permutations, more accurate \emph{P}-values},
journal = {Bioinform.},
volume = {25},
number = {12},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp211},
doi = {10.1093/BIOINFORMATICS/BTP211},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KnijnenburgWRS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BoyleRCBKS09,
author = {John Boyle and
Hector Rovira and
Christopher C. Cavnor and
David B. Burdick and
Sarah A. Killcoyne and
Ilya Shmulevich},
title = {Adaptable data management for systems biology investigations},
journal = {{BMC} Bioinform.},
volume = {10},
year = {2009},
url = {https://doi.org/10.1186/1471-2105-10-79},
doi = {10.1186/1471-2105-10-79},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BoyleRCBKS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/HuangHKZS09,
author = {Albert C. Huang and
Limei Hu and
Stuart A. Kauffman and
Wei Zhang and
Ilya Shmulevich},
title = {Using cell fate attractors to uncover transcriptional regulation of
{HL60} neutrophil differentiation},
journal = {{BMC} Syst. Biol.},
volume = {3},
pages = {20},
year = {2009},
url = {https://doi.org/10.1186/1752-0509-3-20},
doi = {10.1186/1752-0509-3-20},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/HuangHKZS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gensips/VahediSLD09,
author = {Golnaz Vahedi and
Ilya Shmulevich and
Wenbin Liu and
Edward R. Dougherty},
title = {Critical Boolean networks require minimal intervention rate},
booktitle = {2009 {IEEE} International Workshop on Genomic Signal Processing and
Statistics, GENSiPS 2009, Minneapolis, MN, USA, May 17-21, 2009},
pages = {1--2},
publisher = {{IEEE}},
year = {2009},
url = {https://doi.org/10.1109/GENSIPS.2009.5174341},
doi = {10.1109/GENSIPS.2009.5174341},
timestamp = {Wed, 16 Oct 2019 14:14:54 +0200},
biburl = {https://dblp.org/rec/conf/gensips/VahediSLD09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:reference/complexity/KrawitzS09,
author = {Peter M. Krawitz and
Ilya Shmulevich},
editor = {Robert A. Meyers},
title = {Boolean Modeling of Biological Networks},
booktitle = {Encyclopedia of Complexity and Systems Science},
pages = {599--608},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-0-387-30440-3\_40},
doi = {10.1007/978-0-387-30440-3\_40},
timestamp = {Wed, 12 Jul 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/reference/complexity/KrawitzS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BoyleCKS08,
author = {John Boyle and
Christopher C. Cavnor and
Sarah A. Killcoyne and
Ilya Shmulevich},
title = {Systems biology driven software design for the research enterprise},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-295},
doi = {10.1186/1471-2105-9-295},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BoyleCKS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ejbsb/LiuLDS08,
author = {Wenbin Liu and
Harri L{\"{a}}hdesm{\"{a}}ki and
Edward R. Dougherty and
Ilya Shmulevich},
title = {Inference of Boolean Networks Using Sensitivity Regularization},
journal = {{EURASIP} J. Bioinform. Syst. Biol.},
volume = {2008},
year = {2008},
url = {https://doi.org/10.1155/2008/780541},
doi = {10.1155/2008/780541},
timestamp = {Thu, 18 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ejbsb/LiuLDS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jstsp/SchonfeldGSTT08,
author = {Dan Schonfeld and
John Goutsias and
Ilya Shmulevich and
Ioan Tabus and
Ahmed H. Tewfik},
title = {Introduction to the Issue on Genomic and Proteomic Signal Processing},
journal = {{IEEE} J. Sel. Top. Signal Process.},
volume = {2},
number = {3},
pages = {257--260},
year = {2008},
url = {https://doi.org/10.1109/JSTSP.2008.925864},
doi = {10.1109/JSTSP.2008.925864},
timestamp = {Thu, 09 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jstsp/SchonfeldGSTT08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ml/LahdesmakiS08,
author = {Harri L{\"{a}}hdesm{\"{a}}ki and
Ilya Shmulevich},
title = {Learning the structure of dynamic Bayesian networks from time series
and steady state measurements},
journal = {Mach. Learn.},
volume = {71},
number = {2-3},
pages = {185--217},
year = {2008},
url = {https://doi.org/10.1007/s10994-008-5053-y},
doi = {10.1007/S10994-008-5053-Y},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ml/LahdesmakiS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/RamseyKZKTLGGJLNRRRYAS08,
author = {Stephen A. Ramsey and
Sandy L. Klemm and
Daniel E. Zak and
Kathleen A. Kennedy and
Vesteinn Thorsson and
Bin Li and
Mark Gilchrist and
Elizabeth S. Gold and
Carrie D. Johnson and
Vladimir Litvak and
Garnet Navarro and
Jared C. Roach and
Carrie M. Rosenberger and
Alistair G. Rust and
Natalya Yudkovsky and
Alan Aderem and
Ilya Shmulevich},
title = {Uncovering a Macrophage Transcriptional Program by Integrating Evidence
from Motif Scanning and Expression Dynamics},
journal = {PLoS Comput. Biol.},
volume = {4},
number = {3},
year = {2008},
url = {https://doi.org/10.1371/journal.pcbi.1000021},
doi = {10.1371/JOURNAL.PCBI.1000021},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/RamseyKZKTLGGJLNRRRYAS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-0801-4024,
author = {David J. Galas and
Matti Nykter and
Gregory W. Carter and
Nathan D. Price and
Ilya Shmulevich},
title = {Set-based complexity and biological information},
journal = {CoRR},
volume = {abs/0801.4024},
year = {2008},
url = {http://arxiv.org/abs/0801.4024},
eprinttype = {arXiv},
eprint = {0801.4024},
timestamp = {Thu, 03 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-0801-4024.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AhdesmakiLGSY07,
author = {Miika Ahdesm{\"{a}}ki and
Harri L{\"{a}}hdesm{\"{a}}ki and
Andrew Gracey and
Ilya Shmulevich and
Olli Yli{-}Harja},
title = {Robust regression for periodicity detection in non-uniformly sampled
time-course gene expression data},
journal = {{BMC} Bioinform.},
volume = {8},
year = {2007},
url = {https://doi.org/10.1186/1471-2105-8-233},
doi = {10.1186/1471-2105-8-233},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AhdesmakiLGSY07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/VencioS07,
author = {Ricardo Z. N. V{\^{e}}ncio and
Ilya Shmulevich},
title = {ProbCD: enrichment analysis accounting for categorization uncertainty},
journal = {{BMC} Bioinform.},
volume = {8},
year = {2007},
url = {https://doi.org/10.1186/1471-2105-8-383},
doi = {10.1186/1471-2105-8-383},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/VencioS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/VencioVPBS07,
author = {Ricardo Z. N. V{\^{e}}ncio and
Leonardo Varuzza and
Carlos A. de B. Pereira and
Helena Paula Brentani and
Ilya Shmulevich},
title = {Simcluster: clustering enumeration gene expression data on the simplex
space},
journal = {{BMC} Bioinform.},
volume = {8},
year = {2007},
url = {https://doi.org/10.1186/1471-2105-8-246},
doi = {10.1186/1471-2105-8-246},
timestamp = {Tue, 19 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/VencioVPBS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/sigpro/LahdesmakiHSY06,
author = {Harri L{\"{a}}hdesm{\"{a}}ki and
Sampsa Hautaniemi and
Ilya Shmulevich and
Olli Yli{-}Harja},
title = {Relationships between probabilistic Boolean networks and dynamic Bayesian
networks as models of gene regulatory networks},
journal = {Signal Process.},
volume = {86},
number = {4},
pages = {814--834},
year = {2006},
url = {https://doi.org/10.1016/j.sigpro.2005.06.008},
doi = {10.1016/J.SIGPRO.2005.06.008},
timestamp = {Sat, 22 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/sigpro/LahdesmakiHSY06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tsp/TabusHMRSZA06,
author = {Ioan Tabus and
Andrea Hategan and
Cristian Mircean and
Jorma Rissanen and
Ilya Shmulevich and
Wei Zhang and
Jaakko Astola},
title = {Nonlinear modeling of protein expressions in protein arrays},
journal = {{IEEE} Trans. Signal Process.},
volume = {54},
number = {6-2},
pages = {2394--2407},
year = {2006},
url = {https://doi.org/10.1109/TSP.2006.873719},
doi = {10.1109/TSP.2006.873719},
timestamp = {Tue, 10 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tsp/TabusHMRSZA06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/embc/NiemistoSSSAY06,
author = {Antti Niemist{\"{o}} and
Jyrki Selinummi and
Ramsey Saleem and
Ilya Shmulevich and
John D. Aitchison and
Olli Yli{-}Harja},
title = {Extraction of the Number of Peroxisomes in Yeast Cells by Automated
Image Analysis},
booktitle = {28th International Conference of the {IEEE} Engineering in Medicine
and Biology Society, {EMBC} 2006, New York City, NY, USA, August 30
- September 3, 2006, Main Volume},
pages = {2353--2356},
publisher = {{IEEE}},
year = {2006},
url = {https://doi.org/10.1109/IEMBS.2006.259890},
doi = {10.1109/IEMBS.2006.259890},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/embc/NiemistoSSSAY06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MirceanSCCJTHZ05,
author = {Cristian Mircean and
Ilya Shmulevich and
David Cogdell and
Woonyoung Choi and
Yu Jia and
Ioan Tabus and
Stanley R. Hamilton and
Wei Zhang},
title = {Robust estimation of protein expression ratios with lysate microarray
technology},
journal = {Bioinform.},
volume = {21},
number = {9},
pages = {1935--1942},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti258},
doi = {10.1093/BIOINFORMATICS/BTI258},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MirceanSCCJTHZ05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LahdesmakiSDYZ05,
author = {Harri L{\"{a}}hdesm{\"{a}}ki and
Ilya Shmulevich and
Valerie Dunmire and
Olli Yli{-}Harja and
Wei Zhang},
title = {\emph{In silico }microdissection of microarray data from heterogeneous
cell populations},
journal = {{BMC} Bioinform.},
volume = {6},
pages = {54},
year = {2005},
url = {https://doi.org/10.1186/1471-2105-6-54},
doi = {10.1186/1471-2105-6-54},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LahdesmakiSDYZ05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/complexity/ToulouseASK05,
author = {Trent Toulouse and
Ping Ao and
Ilya Shmulevich and
Stuart A. Kauffman},
title = {Noise in a small genetic circuit that undergoes bifurcation},
journal = {Complex.},
volume = {11},
number = {1},
pages = {45--51},
year = {2005},
url = {https://doi.org/10.1002/cplx.20099},
doi = {10.1002/CPLX.20099},
timestamp = {Thu, 24 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/complexity/ToulouseASK05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/sigpro/BrunDS05,
author = {Marcel Brun and
Edward R. Dougherty and
Ilya Shmulevich},
title = {Steady-state probabilities for attractors in probabilistic Boolean
networks},
journal = {Signal Process.},
volume = {85},
number = {10},
pages = {1993--2013},
year = {2005},
url = {https://doi.org/10.1016/j.sigpro.2005.02.016},
doi = {10.1016/J.SIGPRO.2005.02.016},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/sigpro/BrunDS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/NiemistoDYZS05,
author = {Antti Niemist{\"{o}} and
Valerie Dunmire and
Olli Yli{-}Harja and
Wei Zhang and
Ilya Shmulevich},
title = {Robust quantification of in vitro angiogenesis through image analysis},
journal = {{IEEE} Trans. Medical Imaging},
volume = {24},
number = {4},
pages = {549--553},
year = {2005},
url = {https://doi.org/10.1109/TMI.2004.837339},
doi = {10.1109/TMI.2004.837339},
timestamp = {Thu, 18 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tmi/NiemistoDYZS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-nlin-0511018,
author = {Carlos Gershenson and
Stuart A. Kauffman and
Ilya Shmulevich},
title = {The Role of Redundancy in the Robustness of Random Boolean Networks},
journal = {CoRR},
volume = {abs/nlin/0511018},
year = {2005},
url = {http://arxiv.org/abs/nlin/0511018},
eprinttype = {arXiv},
eprint = {nlin/0511018},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-nlin-0511018.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HashimotoKSZBD04,
author = {Ronaldo Fumio Hashimoto and
Seungchan Kim and
Ilya Shmulevich and
Wei Zhang and
Michael L. Bittner and
Edward R. Dougherty},
title = {Growing genetic regulatory networks from seed genes},
journal = {Bioinform.},
volume = {20},
number = {8},
pages = {1241--1247},
year = {2004},
url = {https://doi.org/10.1093/bioinformatics/bth074},
doi = {10.1093/BIOINFORMATICS/BTH074},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HashimotoKSZBD04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ejasp/DoughertySB04,
author = {Edward R. Dougherty and
Ilya Shmulevich and
Michael L. Bittner},
title = {Genomic Signal Processing: The Salient Issues},
journal = {{EURASIP} J. Adv. Signal Process.},
volume = {2004},
number = {1},
pages = {146--153},
year = {2004},
url = {https://doi.org/10.1155/S1110865704310097},
doi = {10.1155/S1110865704310097},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ejasp/DoughertySB04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ejasp/NiemistoSLDY04,
author = {Antti Niemist{\"{o}} and
Ilya Shmulevich and
Vladimir Vasilyevich Lukin and
Alexander N. Dolia and
Olli Yli{-}Harja},
title = {Correction of Misclassifications Using a Proximity-Based Estimation
Method},
journal = {{EURASIP} J. Adv. Signal Process.},
volume = {2004},
number = {8},
pages = {1142--1155},
year = {2004},
url = {https://doi.org/10.1155/S1110865704402145},
doi = {10.1155/S1110865704402145},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ejasp/NiemistoSLDY04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/spl/ShmulevichLE04,
author = {Ilya Shmulevich and
Harri L{\"{a}}hdesm{\"{a}}ki and
Karen O. Egiazarian},
title = {Spectral methods for testing membership in certain post classes and
the class of forcing functions},
journal = {{IEEE} Signal Process. Lett.},
volume = {11},
number = {2},
pages = {289--292},
year = {2004},
url = {https://doi.org/10.1109/LSP.2003.821725},
doi = {10.1109/LSP.2003.821725},
timestamp = {Sun, 28 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/spl/ShmulevichLE04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ml/LahdesmakiSY03,
author = {Harri L{\"{a}}hdesm{\"{a}}ki and
Ilya Shmulevich and
Olli Yli{-}Harja},
title = {On Learning Gene Regulatory Networks Under the Boolean Network Model},
journal = {Mach. Learn.},
volume = {52},
number = {1-2},
pages = {147--167},
year = {2003},
url = {https://doi.org/10.1023/A:1023905711304},
doi = {10.1023/A:1023905711304},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ml/LahdesmakiSY03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/sigpro/AstolaDST03,
author = {Jaakko Astola and
Edward R. Dougherty and
Ilya Shmulevich and
Ioan Tabus},
title = {Genomic signal processing},
journal = {Signal Process.},
volume = {83},
number = {4},
pages = {691--694},
year = {2003},
url = {https://doi.org/10.1016/S0165-1684(02)00467-X},
doi = {10.1016/S0165-1684(02)00467-X},
timestamp = {Sat, 22 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/sigpro/AstolaDST03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/sigpro/DoughertyS03,
author = {Edward R. Dougherty and
Ilya Shmulevich},
title = {Mappings between probabilistic Boolean networks},
journal = {Signal Process.},
volume = {83},
number = {4},
pages = {799--809},
year = {2003},
url = {https://doi.org/10.1016/S0165-1684(02)00480-2},
doi = {10.1016/S0165-1684(02)00480-2},
timestamp = {Sat, 22 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/sigpro/DoughertyS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isspa/GiurcaneanuTSZ03,
author = {Ciprian Doru Giurcaneanu and
Ioan Tabus and
Ilya Shmulevich and
Wei Zhang},
title = {Stability-based cluster analysis applied to microarray data},
booktitle = {Seventh International Symposium on Signal Processing and Its Applications,
{ISSPA} 2003, July 1-4, 2003, Paris, France, Proceedings, Volume 2},
pages = {57--60},
publisher = {{IEEE}},
year = {2003},
url = {https://doi.org/10.1109/ISSPA.2003.1224814},
doi = {10.1109/ISSPA.2003.1224814},
timestamp = {Wed, 16 Oct 2019 14:14:56 +0200},
biburl = {https://dblp.org/rec/conf/isspa/GiurcaneanuTSZ03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShmulevichDKZ02,
author = {Ilya Shmulevich and
Edward R. Dougherty and
Seungchan Kim and
Wei Zhang},
title = {Probabilistic Boolean networks: a rule-based uncertainty model for
gene regulatory networks},
journal = {Bioinform.},
volume = {18},
number = {2},
pages = {261--274},
year = {2002},
url = {https://doi.org/10.1093/bioinformatics/18.2.261},
doi = {10.1093/BIOINFORMATICS/18.2.261},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShmulevichDKZ02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShmulevichZ02,
author = {Ilya Shmulevich and
Wei Zhang},
title = {Binary analysis and optimization-based normalization of gene expression
data},
journal = {Bioinform.},
volume = {18},
number = {4},
pages = {555--565},
year = {2002},
url = {https://doi.org/10.1093/bioinformatics/18.4.555},
doi = {10.1093/BIOINFORMATICS/18.4.555},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShmulevichZ02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShmulevichDZ02,
author = {Ilya Shmulevich and
Edward R. Dougherty and
Wei Zhang},
title = {ayesian automatic relevance determination algorithms for classifying
gene expression data},
journal = {Bioinform.},
volume = {18},
number = {10},
pages = {1332--1339},
year = {2002},
url = {https://doi.org/10.1093/bioinformatics/18.10.1332},
doi = {10.1093/BIOINFORMATICS/18.10.1332},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShmulevichDZ02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dm/KorshunovS02,
author = {Aleksey D. Korshunov and
Ilya Shmulevich},
title = {On the distribution of the number of monotone Boolean functions relative
to the number of lower units},
journal = {Discret. Math.},
volume = {257},
number = {2-3},
pages = {463--479},
year = {2002},
url = {https://doi.org/10.1016/S0012-365X(02)00507-1},
doi = {10.1016/S0012-365X(02)00507-1},
timestamp = {Fri, 12 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/dm/KorshunovS02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ejasp/BarnerASS02,
author = {Kenneth E. Barner and
Gonzalo R. Arce and
Giovanni L. Sicuranza and
Ilya Shmulevich},
title = {Editorial},
journal = {{EURASIP} J. Adv. Signal Process.},
volume = {2002},
number = {1},
pages = {1--3},
year = {2002},
url = {https://doi.org/10.1155/S1110865702002007},
doi = {10.1155/S1110865702002007},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ejasp/BarnerASS02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jmiv/GluhovskyMS02,
author = {Ilya Gluhovsky and
Vladimir P. Melnik and
Ilya Shmulevich},
title = {Markov Random Field Modeling in Median Pyramidal Transform Domain
for Denoising Applications},
journal = {J. Math. Imaging Vis.},
volume = {16},
number = {3},
pages = {237--249},
year = {2002},
url = {https://doi.org/10.1023/A:1020381711050},
doi = {10.1023/A:1020381711050},
timestamp = {Mon, 08 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jmiv/GluhovskyMS02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/pieee/ShmulevichDZ02,
author = {Ilya Shmulevich and
Edward R. Dougherty and
Wei Zhang},
title = {From Boolean to probabilistic Boolean networks as models of genetic
regulatory networks},
journal = {Proc. {IEEE}},
volume = {90},
number = {11},
pages = {1778--1792},
year = {2002},
url = {https://doi.org/10.1109/JPROC.2002.804686},
doi = {10.1109/JPROC.2002.804686},
timestamp = {Tue, 17 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/pieee/ShmulevichDZ02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/prl/KatkovnikS02,
author = {Vladimir Katkovnik and
Ilya Shmulevich},
title = {Kernel density estimation with adaptive varying window size},
journal = {Pattern Recognit. Lett.},
volume = {23},
number = {14},
pages = {1641--1648},
year = {2002},
url = {https://doi.org/10.1016/S0167-8655(02)00127-7},
doi = {10.1016/S0167-8655(02)00127-7},
timestamp = {Sat, 22 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/prl/KatkovnikS02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tsp/ShmulevichYAK02,
author = {Ilya Shmulevich and
Olli Yli{-}Harja and
Jaakko Astola and
Aleksey D. Korshunov},
title = {On the robustness of the class of stack filters},
journal = {{IEEE} Trans. Signal Process.},
volume = {50},
number = {7},
pages = {1640--1649},
year = {2002},
url = {https://doi.org/10.1109/TSP.2002.1011205},
doi = {10.1109/TSP.2002.1011205},
timestamp = {Tue, 10 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tsp/ShmulevichYAK02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ejasp/BarnerASS01,
author = {Kenneth E. Barner and
Gonzalo R. Arce and
Giovanni L. Sicuranza and
Ilya Shmulevich},
title = {Editorial},
journal = {{EURASIP} J. Adv. Signal Process.},
volume = {2001},
number = {4},
pages = {189--191},
year = {2001},
url = {https://doi.org/10.1155/S1110865701000993},
doi = {10.1155/S1110865701000993},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ejasp/BarnerASS01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ipl/ShmulevichKA01,
author = {Ilya Shmulevich and
Aleksey D. Korshunov and
Jaakko Astola},
title = {Almost all monotone Boolean functions are polynomially learnable using
membership queries},
journal = {Inf. Process. Lett.},
volume = {79},
number = {5},
pages = {211--213},
year = {2001},
url = {https://doi.org/10.1016/S0020-0190(00)00225-8},
doi = {10.1016/S0020-0190(00)00225-8},
timestamp = {Fri, 26 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ipl/ShmulevichKA01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/lre/ShmulevichYCPL01,
author = {Ilya Shmulevich and
Olli Yli{-}Harja and
Edward J. Coyle and
Dirk{-}Jan Povel and
Kjell Lemstr{\"{o}}m},
title = {Perceptual Issues in Music Pattern Recognition: Complexity of Rhythm
and Key Finding},
journal = {Comput. Humanit.},
volume = {35},
number = {1},
pages = {23--35},
year = {2001},
url = {https://doi.org/10.1023/A:1002629217152},
doi = {10.1023/A:1002629217152},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/lre/ShmulevichYCPL01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/sigpro/KoivistoYNS01,
author = {Pertti Koivisto and
Olli Yli{-}Harja and
Antti Niemist{\"{o}} and
Ilya Shmulevich},
title = {Breakdown probabilities of recursive stack filters},
journal = {Signal Process.},
volume = {81},
number = {1},
pages = {227--231},
year = {2001},
url = {https://doi.org/10.1016/S0165-1684(00)00222-X},
doi = {10.1016/S0165-1684(00)00222-X},
timestamp = {Sat, 22 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/sigpro/KoivistoYNS01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/sigpro/Yli-HarjaKBCHS01,
author = {Olli Yli{-}Harja and
Pertti Koivisto and
J. Andrew Bangham and
Gavin C. Cawley and
Richard W. Harvey and
Ilya Shmulevich},
title = {Simplified implementation of the recursive median sieve},
journal = {Signal Process.},
volume = {81},
number = {7},
pages = {1565--1570},
year = {2001},
url = {https://doi.org/10.1016/S0165-1684(01)00054-8},
doi = {10.1016/S0165-1684(01)00054-8},
timestamp = {Sat, 22 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/sigpro/Yli-HarjaKBCHS01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/spl/ShmulevichA01,
author = {Ilya Shmulevich and
Gonzalo R. Arce},
title = {Spectral design of weighted median filters admitting negative weights},
journal = {{IEEE} Signal Process. Lett.},
volume = {8},
number = {12},
pages = {313--316},
year = {2001},
url = {https://doi.org/10.1109/97.975879},
doi = {10.1109/97.975879},
timestamp = {Tue, 02 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/spl/ShmulevichA01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tsmc/ShmulevichGA01,
author = {Ilya Shmulevich and
Moncef Gabbouj and
Jaakko Astola},
title = {Complexity of the consistency problem for certain Post classes},
journal = {{IEEE} Trans. Syst. Man Cybern. Part {B}},
volume = {31},
number = {2},
pages = {251--253},
year = {2001},
url = {https://doi.org/10.1109/3477.915348},
doi = {10.1109/3477.915348},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tsmc/ShmulevichGA01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tsp/MelnikSEA01,
author = {Vladimir P. Melnik and
Ilya Shmulevich and
Karen O. Egiazarian and
Jaakko Astola},
title = {Block-median pyramidal transform: analysis and denoising applications},
journal = {{IEEE} Trans. Signal Process.},
volume = {49},
number = {2},
pages = {364--372},
year = {2001},
url = {https://doi.org/10.1109/78.902119},
doi = {10.1109/78.902119},
timestamp = {Tue, 10 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tsp/MelnikSEA01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tsp/ShmulevichPA01,
author = {Ilya Shmulevich and
Jos{\'{e}} L. Paredes and
Gonzalo R. Arce},
title = {Output distributions of stack filters based on mirrored threshold
decomposition},
journal = {{IEEE} Trans. Signal Process.},
volume = {49},
number = {7},
pages = {1454--1460},
year = {2001},
url = {https://doi.org/10.1109/78.928698},
doi = {10.1109/78.928698},
timestamp = {Tue, 10 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tsp/ShmulevichPA01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tsp/ShmulevichPA01a,
author = {Ilya Shmulevich and
Jos{\'{e}} L. Paredes and
Gonzalo R. Arce},
title = {Correction to "output distributionsof stack filters based on
mirrored threshold decomposition"},
journal = {{IEEE} Trans. Signal Process.},
volume = {49},
number = {9},
pages = {2162},
year = {2001},
url = {https://doi.org/10.1109/TSP.2001.942644},
doi = {10.1109/TSP.2001.942644},
timestamp = {Tue, 10 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tsp/ShmulevichPA01a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/spl/ShmulevichME00,
author = {Ilya Shmulevich and
Vladimir P. Melnik and
Karen O. Egiazarian},
title = {The use of sample selection probabilities for stack filter design},
journal = {{IEEE} Signal Process. Lett.},
volume = {7},
number = {7},
pages = {189--192},
year = {2000},
url = {https://doi.org/10.1109/97.847365},
doi = {10.1109/97.847365},
timestamp = {Thu, 11 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/spl/ShmulevichME00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eusipco/NiemistoYVKS00,
author = {Antti Niemist{\"{o}} and
Olli Yli{-}Harja and
Antti Valmari and
Pertti Koivisto and
Ilya Shmulevich},
title = {Reduction factors in finite automata with application to nonlinear
filters},
booktitle = {10th European Signal Processing Conference, {EUSIPCO} 2000, Tampere,
Finland, September 4-8, 2000},
pages = {1--4},
publisher = {{IEEE}},
year = {2000},
url = {https://ieeexplore.ieee.org/document/7075754/},
timestamp = {Mon, 09 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/eusipco/NiemistoYVKS00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eusipco/ShmulevichCG00,
author = {Ilya Shmulevich and
Bogdan Cramariuc and
Moncef Gabbouj},
title = {A framework for ordinal-based image correspondence},
booktitle = {10th European Signal Processing Conference, {EUSIPCO} 2000, Tampere,
Finland, September 4-8, 2000},
pages = {1--4},
publisher = {{IEEE}},
year = {2000},
url = {https://ieeexplore.ieee.org/document/7075606/},
timestamp = {Mon, 09 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/eusipco/ShmulevichCG00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eusipco/ShmulevichG00,
author = {Ilya Shmulevich and
Moncef Gabbouj},
title = {Reliable learning using post classes},
booktitle = {10th European Signal Processing Conference, {EUSIPCO} 2000, Tampere,
Finland, September 4-8, 2000},
pages = {1--4},
publisher = {{IEEE}},
year = {2000},
url = {https://ieeexplore.ieee.org/document/7075734/},
timestamp = {Mon, 09 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/eusipco/ShmulevichG00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icassp/MelnikESK00,
author = {Vladimir P. Melnik and
Karen O. Egiazarian and
Ilya Shmulevich and
Pauli Kuosmanen},
title = {A tree of median pyramidal decompositions with an application to signal
denoising},
booktitle = {{IEEE} International Conference on Acoustics, Speech, and Signal Processing.
{ICASSP} 2000, 5-9 June, 2000, Hilton Hotel and Convention Center,
Istanbul, Turkey},
pages = {117--120},
publisher = {{IEEE}},
year = {2000},
url = {https://doi.org/10.1109/ICASSP.2000.861879},
doi = {10.1109/ICASSP.2000.861879},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icassp/MelnikESK00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icassp/ShmulevichPA00,
author = {Ilya Shmulevich and
Jos{\'{e}} L. Paredes and
Gonzalo R. Arce},
title = {Statistics of stack filters with mirrored threshold decomposition},
booktitle = {{IEEE} International Conference on Acoustics, Speech, and Signal Processing.
{ICASSP} 2000, 5-9 June, 2000, Hilton Hotel and Convention Center,
Istanbul, Turkey},
pages = {3826--3829},
publisher = {{IEEE}},
year = {2000},
url = {https://doi.org/10.1109/ICASSP.2000.860237},
doi = {10.1109/ICASSP.2000.860237},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icassp/ShmulevichPA00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icip/CramariucSGM00,
author = {Bogdan Cramariuc and
Ilya Shmulevich and
Moncef Gabbouj and
Asko Makela},
title = {A New Image Similarity Measure Based on Ordinal Correlation},
booktitle = {Proceedings of the 2000 International Conference on Image Processing,
{ICIP} 2000, Vancouver, BC, Canada, September 10-13, 2000},
pages = {718--721},
publisher = {{IEEE}},
year = {2000},
url = {https://doi.org/10.1109/ICIP.2000.899555},
doi = {10.1109/ICIP.2000.899555},
timestamp = {Wed, 16 Oct 2019 14:14:52 +0200},
biburl = {https://dblp.org/rec/conf/icip/CramariucSGM00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/spl/ShmulevichYEA99,
author = {Ilya Shmulevich and
Olli Yli{-}Harja and
Karen O. Egiazarian and
Jaakko Astola},
title = {Output distributions of recursive stack filters},
journal = {{IEEE} Signal Process. Lett.},
volume = {6},
number = {7},
pages = {175--178},
year = {1999},
url = {https://doi.org/10.1109/97.769362},
doi = {10.1109/97.769362},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/spl/ShmulevichYEA99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icip/MelnikSEA99,
author = {Vladimir P. Melnik and
Ilya Shmulevich and
Karen O. Egiazarian and
Jaakko Astola},
title = {Image Denoising Using a Block-Median Pyramid},
booktitle = {Proceedings of the 1999 International Conference on Image Processing,
{ICIP} '99, Kobe, Japan, October 24-28, 1999},
pages = {162--166},
publisher = {{IEEE}},
year = {1999},
url = {https://doi.org/10.1109/ICIP.1999.819570},
doi = {10.1109/ICIP.1999.819570},
timestamp = {Wed, 16 Oct 2019 14:14:52 +0200},
biburl = {https://dblp.org/rec/conf/icip/MelnikSEA99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nsip/ShmulevichME99,
author = {Ilya Shmulevich and
Vladimir P. Melnik and
Karen O. Egiazarian},
editor = {A. Enis {\c{C}}etin and
Lale Akarun and
Aysin Ert{\"{u}}z{\"{u}}n and
Metin N. Gurcan and
Yasemin Yardimci},
title = {Combination of transform based denoising and stack filtering for non-Gaussian
noise suppression},
booktitle = {Proceedings of the {IEEE-EURASIP} Workshop on Nonlinear Signal and
Image Processing (NSIP'99), Antalya, Turkey, June 20-23, 1999},
pages = {282--286},
publisher = {Bogazi{\c{c}}i University Printhouse},
year = {1999},
timestamp = {Thu, 08 Oct 2015 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/nsip/ShmulevichME99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nsip/Yli-HarjaSL99,
author = {Olli Yli{-}Harja and
Ilya Shmulevich and
Kjell Lemstr{\"{o}}m},
editor = {A. Enis {\c{C}}etin and
Lale Akarun and
Aysin Ert{\"{u}}z{\"{u}}n and
Metin N. Gurcan and
Yasemin Yardimci},
title = {Graph-based smoothing of class data with applications in musical key
finding},
booktitle = {Proceedings of the {IEEE-EURASIP} Workshop on Nonlinear Signal and
Image Processing (NSIP'99), Antalya, Turkey, June 20-23, 1999},
pages = {311--315},
publisher = {Bogazi{\c{c}}i University Printhouse},
year = {1999},
timestamp = {Mon, 14 Feb 2005 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/nsip/Yli-HarjaSL99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nsip/ShmulevichME99a,
author = {Ilya Shmulevich and
Vladimir P. Melnik and
Karen O. Egiazarian},
editor = {A. Enis {\c{C}}etin and
Lale Akarun and
Aysin Ert{\"{u}}z{\"{u}}n and
Metin N. Gurcan and
Yasemin Yardimci},
title = {Optimization of stack filters using sample selection probabilities},
booktitle = {Proceedings of the {IEEE-EURASIP} Workshop on Nonlinear Signal and
Image Processing (NSIP'99), Antalya, Turkey, June 20-23, 1999},
pages = {496--500},
publisher = {Bogazi{\c{c}}i University Printhouse},
year = {1999},
timestamp = {Thu, 08 Oct 2015 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/nsip/ShmulevichME99a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eusipco/Shmulevich98,
author = {Ilya Shmulevich},
title = {Generation of idempotent monotone Boolean functions},
booktitle = {9th European Signal Processing Conference, {EUSIPCO} 1998, Island
of Rhodes, Greece, 8-11 September, 1998},
pages = {1--3},
publisher = {{IEEE}},
year = {1998},
url = {https://ieeexplore.ieee.org/document/7089955/},
timestamp = {Mon, 09 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/eusipco/Shmulevich98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icassp/CoyleS98,
author = {Edward J. Coyle and
Ilya Shmulevich},
title = {A system for machine recognition of music patterns},
booktitle = {Proceedings of the 1998 {IEEE} International Conference on Acoustics,
Speech and Signal Processing, {ICASSP} '98, Seattle, Washington, USA,
May 12-15, 1998},
pages = {3597--3600},
publisher = {{IEEE}},
year = {1998},
url = {https://doi.org/10.1109/ICASSP.1998.679656},
doi = {10.1109/ICASSP.1998.679656},
timestamp = {Wed, 16 Oct 2019 14:14:52 +0200},
biburl = {https://dblp.org/rec/conf/icassp/CoyleS98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mmsp/ShmulevichP98,
author = {Ilya Shmulevich and
Dirk{-}Jan Povel},
editor = {Ping Wah Wong and
Abeer Alwan and
Antonio Ortega and
C.{-}C. Jay Kuo and
C. L. Max Nikias},
title = {Rhythm complexity measures for music pattern recognition},
booktitle = {Second {IEEE} Workshop on Multimedia Signal Processing, {MMSP} 1998,
Redondo Beach, California, USA, December 7-9, 1998},
pages = {167--172},
publisher = {{IEEE}},
year = {1998},
url = {https://doi.org/10.1109/MMSP.1998.738930},
doi = {10.1109/MMSP.1998.738930},
timestamp = {Wed, 16 Oct 2019 14:14:49 +0200},
biburl = {https://dblp.org/rec/conf/mmsp/ShmulevichP98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nmbia/ShmulevichC98,
author = {Ilya Shmulevich and
Edward J. Coyle},
editor = {Stephen Marshall and
Neal R. Harvey and
Druti Shah},
title = {On the Structure of Idempotent Monotone Boolean Functions},
booktitle = {Noblesse Workshop on Non-Linear Model Based Image Analysis, {NMBIA}
1998, 1.3 July 1998, Glasgow, {UK}},
pages = {339--344},
publisher = {Springer},
year = {1998},
url = {https://doi.org/10.1007/978-1-4471-1597-7\_53},
doi = {10.1007/978-1-4471-1597-7\_53},
timestamp = {Wed, 26 Jun 2019 10:10:41 +0200},
biburl = {https://dblp.org/rec/conf/nmbia/ShmulevichC98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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