Stop the war!
Остановите войну!
for scientists:
default search action
BibTeX records: Christian J. Stoeckert Jr.
@article{DBLP:journals/nar/AmosABBBBBBBBBC22, author = {Beatrice Amos and Cristina Aurrecoechea and Matthieu Barba and Ana Barreto and Evelina Y. Basenko and Wojciech Bazant and Robert Belnap and Ann S. Blevins and Ulrike B{\"{o}}hme and John Brestelli and Brian P. Brunk and Mark J. Caddick and Danielle Callan and Lahcen I. Campbell and Mikkel B. Christensen and George K. Christophides and Kathryn Crouch and Kristina Davis and Jeremy D. DeBarry and Ryan Doherty and Yikun Duan and Michael Dunn and Dave Falke and Steve Fisher and Paul Flicek and Brett Fox and Bindu Gajria and Gloria I. Giraldo{-}Calder{\'{o}}n and Omar S. Harb and Elizabeth Harper and Christiane Hertz{-}Fowler and Mark J. Hickman and Connor Howington and Sufen Hu and Jay C. Humphrey and John Iodice and Andrew R. Jones and John Judkins and Sarah A. Kelly and Jessica C. Kissinger and Dae Kun Kwon and Kristopher Lamoureux and Daniel Lawson and Wei Li and Kallie Lies and Disha Lodha and Jamie Long and Robert M. MacCallum and Gareth Maslen and Mary Ann McDowell and Jaroslaw Nabrzyski and David S. Roos and Samuel S. C. Rund and Stephanie wever Schulman and Achchuthan Shanmugasundram and Vasily Sitnik and Drew Spruill and David Starns and Christian J. Stoeckert Jr. and Sheena Shah Tomko and Haiming Wang and Susanne Warrenfeltz and Robert Wieck and Paul A. Wilkinson and Lin Xu and Jie Zheng}, title = {VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center}, journal = {Nucleic Acids Res.}, volume = {50}, number = {{D1}}, pages = {898--911}, year = {2022}, url = {https://doi.org/10.1093/nar/gkab929}, doi = {10.1093/NAR/GKAB929}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/nar/AmosABBBBBBBBBC22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/JacksonMOVBBCCD21, author = {Rebecca C. Jackson and Nicolas Matentzoglu and James A. Overton and Randi Vita and James P. Balhoff and Pier Luigi Buttigieg and Seth Carbon and M{\'{e}}lanie Courtot and Alexander D. Diehl and Damion M. Dooley and William D. Duncan and Nomi L. Harris and Melissa A. Haendel and Suzanna E. Lewis and Darren A. Natale and David Osumi{-}Sutherland and Alan Ruttenberg and Lynn M. Schriml and Barry Smith and Christian J. Stoeckert Jr. and Nicole A. Vasilevsky and Ramona L. Walls and Jie Zheng and Christopher J. Mungall and Bjoern Peters}, title = {{OBO} Foundry in 2021: operationalizing open data principles to evaluate ontologies}, journal = {Database J. Biol. Databases Curation}, volume = {2021}, year = {2021}, url = {https://doi.org/10.1093/database/baab069}, doi = {10.1093/DATABASE/BAAB069}, timestamp = {Tue, 16 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/JacksonMOVBBCCD21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/VitaZJDOMBSHKBL21, author = {Randi Vita and Jie Zheng and Rebecca C. Jackson and Damion M. Dooley and James A. Overton and Mark A. Miller and Daniel C. Berrios and Richard H. Scheuermann and Yongqun He and Hande K{\"{u}}{\c{c}}{\"{u}}k{-}McGinty and Mathias Brochhausen and Aisyah Yu Lin and Sagar B. Jain and Marcus C. Chibucos and John Judkins and Michelle G. Giglio and Irene Y. Feng and Gully Burns and Matthew H. Brush and Bjoern Peters and Christian J. Stoeckert Jr.}, title = {Standardization of assay representation in the Ontology for Biomedical Investigations}, journal = {Database J. Biol. Databases Curation}, volume = {2021}, year = {2021}, url = {https://doi.org/10.1093/database/baab040}, doi = {10.1093/DATABASE/BAAB040}, timestamp = {Tue, 16 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/VitaZJDOMBSHKBL21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icbo/FreedmanMWS20, author = {Hayden Freedman and Mark A. Miller and Heather Williams and Christian J. Stoeckert Jr.}, editor = {Janna Hastings and Frank Loebe}, title = {Scaling and Querying a Semantically Rich, Electronic Healthcare Graph}, booktitle = {Proceedings of the 11th International Conference on Biomedical Ontologies {(ICBO)} joint with the 10th Workshop on Ontologies and Data in Life Sciences {(ODLS)} and part of the Bolzano Summer of Knowledge (BoSK 2020), Virtual conference hosted in Bolzano, Italy, September 17, 2020}, series = {{CEUR} Workshop Proceedings}, volume = {2807}, pages = {1--11}, publisher = {CEUR-WS.org}, year = {2020}, url = {https://ceur-ws.org/Vol-2807/paperC.pdf}, timestamp = {Fri, 10 Mar 2023 16:22:24 +0100}, biburl = {https://dblp.org/rec/conf/icbo/FreedmanMWS20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icbo/MillerFS20, author = {Mark A. Miller and Hayden Freedman and Christian J. Stoeckert Jr.}, editor = {Janna Hastings and Frank Loebe}, title = {A Robust, Self-Training Classifier for Medication Strings, with Quantitative and Semantic Confidence Metrics}, booktitle = {Proceedings of the 11th International Conference on Biomedical Ontologies {(ICBO)} joint with the 10th Workshop on Ontologies and Data in Life Sciences {(ODLS)} and part of the Bolzano Summer of Knowledge (BoSK 2020), Virtual conference hosted in Bolzano, Italy, September 17, 2020}, series = {{CEUR} Workshop Proceedings}, volume = {2807}, pages = {1--12}, publisher = {CEUR-WS.org}, year = {2020}, url = {https://ceur-ws.org/Vol-2807/paperI.pdf}, timestamp = {Fri, 10 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/icbo/MillerFS20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icbo/0001JS19, author = {Jie Zheng and John Judkins and Christian J. Stoeckert Jr.}, editor = {Alexander D. Diehl and William D. Duncan and Gloria Sanso}, title = {OWLmaker: An Application for Generating {OWL} Files from Tabular Text}, booktitle = {Proceedings of the 10th International Conference on Biomedical Ontology {(ICBO} 2019), Buffalo, New York, USA, July 30 - August 2, 2019}, series = {{CEUR} Workshop Proceedings}, volume = {2931}, pages = {1--3}, publisher = {CEUR-WS.org}, year = {2019}, url = {https://ceur-ws.org/Vol-2931/ICBO\_2019\_paper\_54.pdf}, timestamp = {Fri, 10 Mar 2023 16:22:23 +0100}, biburl = {https://dblp.org/rec/conf/icbo/0001JS19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icbo/BostES0SB19, author = {Sarah Bost and Niina Eklund and Kaisa Silander and Jie Zheng and Christian J. Stoeckert Jr. and Mathias Brochhausen}, editor = {Alexander D. Diehl and William D. Duncan and Gloria Sanso}, title = {Mapping Data Annotated with the Minimum Information About BIobank data Sharing {(MIABIS)} 2.0 to the Ontology for Biobanking {(OBIB)}}, booktitle = {Proceedings of the 10th International Conference on Biomedical Ontology {(ICBO} 2019), Buffalo, New York, USA, July 30 - August 2, 2019}, series = {{CEUR} Workshop Proceedings}, volume = {2931}, pages = {1--2}, publisher = {CEUR-WS.org}, year = {2019}, url = {https://ceur-ws.org/Vol-2931/ICBO\_2019\_paper\_52.pdf}, timestamp = {Fri, 10 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/icbo/BostES0SB19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icbo/HeOSDOSRS000SYY19, author = {Yongqun He and Edison Ong and Jennifer Schaub and Frederick Dowd and John F. O'Toole and Anastasios Siapos and Christian G. Reich and Sarah Seager and Ling Wang and Hong Yu and Jie Zheng and Christian J. Stoeckert Jr. and Xiaolin Yang and Sheng Yang and Becky Steck and Christopher Park and Laura Barisoni and Matthias Kretzler and Jonathan Himmelfarb and Ravi Iyengar and Sean D. Mooney}, editor = {Alexander D. Diehl and William D. Duncan and Gloria Sanso}, title = {{OPMI:} the Ontology of Precision Medicine and Investigation and its Support for Clinical Data and Metadata Representation and Analysis}, booktitle = {Proceedings of the 10th International Conference on Biomedical Ontology {(ICBO} 2019), Buffalo, New York, USA, July 30 - August 2, 2019}, series = {{CEUR} Workshop Proceedings}, volume = {2931}, pages = {1--10}, publisher = {CEUR-WS.org}, year = {2019}, url = {https://ceur-ws.org/Vol-2931/ICBO\_2019\_paper\_34.pdf}, timestamp = {Fri, 10 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/icbo/HeOSDOSRS000SYY19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icbo/MillerS19, author = {Mark A. Miller and Christian J. Stoeckert Jr.}, editor = {Alexander D. Diehl and William D. Duncan and Gloria Sanso}, title = {A Collaborative, Realism-Based, Electronic Healthcare Graph: Public Data, Common Data Models, and Practical Instantiation}, booktitle = {Proceedings of the 10th International Conference on Biomedical Ontology {(ICBO} 2019), Buffalo, New York, USA, July 30 - August 2, 2019}, series = {{CEUR} Workshop Proceedings}, volume = {2931}, pages = {1--10}, publisher = {CEUR-WS.org}, year = {2019}, url = {https://ceur-ws.org/Vol-2931/ICBO\_2019\_paper\_28.pdf}, timestamp = {Fri, 10 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/icbo/MillerS19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/OliveiraBCZIFAK18, author = {Francislon S. Oliveira and John Brestelli and Shon Cade and Jie Zheng and John Iodice and Steve Fischer and Cristina Aurrecoechea and Jessica C. Kissinger and Brian P. Brunk and Christian J. Stoeckert Jr. and Gabriel R. Fernandes and David S. Roos and Daniel P. Beiting}, title = {MicrobiomeDB: a systems biology platform for integrating, mining and analyzing microbiome experiments}, journal = {Nucleic Acids Res.}, volume = {46}, number = {Database-Issue}, pages = {D684--D691}, year = {2018}, url = {https://doi.org/10.1093/nar/gkx1027}, doi = {10.1093/NAR/GKX1027}, timestamp = {Sun, 17 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/OliveiraBCZIFAK18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icbo/MasciMREO0S018, author = {Anna Maria Masci and Shannon McCall and Alessandro Racioppi and Helena Judge Ellis and Jihad S. Obeid and Barry Smith and Christian J. Stoeckert Jr. and Jie Zheng}, editor = {Pankaj Jaiswal and Laurel Cooper and Melissa A. Haendel and Christopher J. Mungall}, title = {Standardization of the Histopathology Cancer Report: An Ontological Approach}, booktitle = {Proceedings of the 9th International Conference on Biological Ontology {(ICBO} 2018), Corvallis, Oregon, USA, August 7-10, 2018}, series = {{CEUR} Workshop Proceedings}, volume = {2285}, publisher = {CEUR-WS.org}, year = {2018}, url = {https://ceur-ws.org/Vol-2285/ICBO\_2018\_paper\_10.pdf}, timestamp = {Fri, 10 Mar 2023 16:22:24 +0100}, biburl = {https://dblp.org/rec/conf/icbo/MasciMREO0S018.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icbo/StoeckertBFMW18, author = {Christian J. Stoeckert Jr. and David L. Birtwell and Hayden Freedman and Mark A. Miller and Heather Williams}, editor = {Pankaj Jaiswal and Laurel Cooper and Melissa A. Haendel and Christopher J. Mungall}, title = {Transforming and Unifying Research with Biomedical Ontologies: The Penn {TURBO} Project}, booktitle = {Proceedings of the 9th International Conference on Biological Ontology {(ICBO} 2018), Corvallis, Oregon, USA, August 7-10, 2018}, series = {{CEUR} Workshop Proceedings}, volume = {2285}, publisher = {CEUR-WS.org}, year = {2018}, url = {https://ceur-ws.org/Vol-2285/ICBO\_2018\_paper\_12.pdf}, timestamp = {Fri, 10 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/icbo/StoeckertBFMW18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/AurrecoecheaBBB17, author = {Cristina Aurrecoechea and Ana Barreto and Evelina Y. Basenko and John Brestelli and Brian P. Brunk and Shon Cade and Kathryn Crouch and Ryan Doherty and Dave Falke and Steve Fischer and Bindu Gajria and Omar S. Harb and Mark Heiges and Christiane Hertz{-}Fowler and Sufen Hu and John Iodice and Jessica C. Kissinger and Cris Lawrence and Wei Li and Deborah F. Pinney and Jane A. Pulman and David S. Roos and Achchuthan Shanmugasundram and Fatima Silva{-}Franco and Sascha Steinbiss and Christian J. Stoeckert Jr. and Drew Spruill and Haiming Wang and Susanne Warrenfeltz and Jie Zheng}, title = {EuPathDB: the eukaryotic pathogen genomics database resource}, journal = {Nucleic Acids Res.}, volume = {45}, number = {Database-Issue}, pages = {D581--D591}, year = {2017}, url = {https://doi.org/10.1093/nar/gkw1105}, doi = {10.1093/NAR/GKW1105}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/nar/AurrecoecheaBBB17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biomedsem/BrochhausenZBWM16, author = {Mathias Brochhausen and Jie Zheng and David L. Birtwell and Heather Williams and Anna Maria Masci and Helena Judge Ellis and Christian J. Stoeckert Jr.}, title = {OBIB-a novel ontology for biobanking}, journal = {J. Biomed. Semant.}, volume = {7}, pages = {23}, year = {2016}, url = {https://doi.org/10.1186/s13326-016-0068-y}, doi = {10.1186/S13326-016-0068-Y}, timestamp = {Thu, 13 Aug 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biomedsem/BrochhausenZBWM16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icbo/ZhengCBRSJAGDSC16, author = {Jie Zheng and Jashon Cade and Brian P. Brunk and David S. Roos and Christian J. Stoeckert Jr. and San James and Emmanuel Arinaitwe and Bryan Greenhouse and Grant Dorsey and Steven Sullivan and Jane M. Carlton and Gabriel Carrasco{-}Escobar and Dionicia Gamboa and Paula Maguina{-}Mercedes and Joseph Vinetz}, editor = {Pankaj Jaiswal and Robert Hoehndorf and Cecilia N. Arighi and Austin Meier}, title = {Malaria Study Data Integration and Information Retrieval Based on {OBO} Foundry Ontologies}, booktitle = {Proceedings of the Joint International Conference on Biological Ontology and BioCreative, Corvallis, Oregon, United States, August 1-4, 2016}, series = {{CEUR} Workshop Proceedings}, volume = {1747}, publisher = {CEUR-WS.org}, year = {2016}, url = {https://ceur-ws.org/Vol-1747/IT503\_ICBO2016.pdf}, timestamp = {Fri, 10 Mar 2023 16:22:23 +0100}, biburl = {https://dblp.org/rec/conf/icbo/ZhengCBRSJAGDSC16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ZhengXSH14, author = {Jie Zheng and Zuoshuang Xiang and Christian J. Stoeckert Jr. and Yongqun He}, title = {Ontodog: a web-based ontology community view generation tool}, journal = {Bioinform.}, volume = {30}, number = {9}, pages = {1340--1342}, year = {2014}, url = {https://doi.org/10.1093/bioinformatics/btu008}, doi = {10.1093/BIOINFORMATICS/BTU008}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ZhengXSH14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biomedsem/SarntivijaiLXMDVSPMPLTSMNBHZSPMCSAH14, author = {Sirarat Sarntivijai and Yu Lin and Zuoshuang Xiang and Terrence F. Meehan and Alexander D. Diehl and Uma D. Vempati and Stephan C. Sch{\"{u}}rer and Chao Pang and James Malone and Helen E. Parkinson and Yue Liu and Terue Takatsuki and Kaoru Saijo and Hiroshi Masuya and Yukio Nakamura and Matthew H. Brush and Melissa A. Haendel and Jie Zheng and Christian J. Stoeckert Jr. and Bjoern Peters and Christopher J. Mungall and Thomas E. Carey and David J. States and Brian D. Athey and Yongqun He}, title = {{CLO:} The cell line ontology}, journal = {J. Biomed. Semant.}, volume = {5}, pages = {37}, year = {2014}, url = {https://doi.org/10.1186/2041-1480-5-37}, doi = {10.1186/2041-1480-5-37}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biomedsem/SarntivijaiLXMDVSPMPLTSMNBHZSPMCSAH14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/Greenfest-AllenMPS13, author = {Emily Greenfest{-}Allen and Jeffrey Malik and James Palis and Christian J. Stoeckert Jr.}, title = {Stat and interferon genes identified by network analysis differentially regulate primitive and definitive erythropoiesis}, journal = {{BMC} Syst. Biol.}, volume = {7}, pages = {38}, year = {2013}, url = {https://doi.org/10.1186/1752-0509-7-38}, doi = {10.1186/1752-0509-7-38}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/Greenfest-AllenMPS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/AurrecoecheaBBBCDFGGGGHHHIKKLPPRSSWW13, author = {Cristina Aurrecoechea and Ana Barreto and John Brestelli and Brian P. Brunk and Shon Cade and Ryan Doherty and Steve Fischer and Bindu Gajria and Xin Gao and Alan R. Gingle and Gregory R. Grant and Omar S. Harb and Mark Heiges and Sufen Hu and John Iodice and Jessica C. Kissinger and Eileen T. Kraemer and Wei Li and Deborah F. Pinney and Brian Pitts and David S. Roos and Ganesh Srinivasamoorthy and Christian J. Stoeckert Jr. and Haiming Wang and Susanne Warrenfeltz}, title = {EuPathDB: The Eukaryotic Pathogen database}, journal = {Nucleic Acids Res.}, volume = {41}, number = {Database-Issue}, pages = {684--691}, year = {2013}, url = {https://doi.org/10.1093/nar/gks1113}, doi = {10.1093/NAR/GKS1113}, timestamp = {Wed, 17 Feb 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/nar/AurrecoecheaBBBCDFGGGGHHHIKKLPPRSSWW13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icbo/ZhengMS13, author = {Jie Zheng and Elisabetta Manduchi and Christian J. Stoeckert Jr.}, editor = {Michel Dumontier and Robert Hoehndorf and Christopher J. O. Baker}, title = {Development of an Application Ontology for Beta Cell Genomics Based On the Ontology for Biomedical Investigations}, booktitle = {Proceedings of the 4th International Conference on Biomedical Ontology, {ICBO} 2013, Montreal, Canada, July 7-12, 2013}, series = {{CEUR} Workshop Proceedings}, volume = {1060}, pages = {62--67}, publisher = {CEUR-WS.org}, year = {2013}, url = {https://ceur-ws.org/Vol-1060/icbo2013\_submission\_31.pdf}, timestamp = {Fri, 10 Mar 2023 16:22:24 +0100}, biburl = {https://dblp.org/rec/conf/icbo/ZhengMS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icbo/CourtotZSBR13, author = {M{\'{e}}lanie Courtot and Jie Zheng and Christian J. Stoeckert Jr. and Ryan Remy Brinkman and Alan Ruttenberg}, editor = {Michel Dumontier and Robert Hoehndorf and Christopher J. O. Baker}, title = {Diagnostic criteria and clinical guidelines standardization to automate case classification}, booktitle = {Proceedings of the 4th International Conference on Biomedical Ontology, {ICBO} 2013, Montreal, Canada, July 7-12, 2013}, series = {{CEUR} Workshop Proceedings}, volume = {1060}, pages = {101--104}, publisher = {CEUR-WS.org}, year = {2013}, url = {https://ceur-ws.org/Vol-1060/icbo2013\_submission\_57.pdf}, timestamp = {Fri, 10 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/icbo/CourtotZSBR13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icbo/BrushZHSPDSH13, author = {Matthew H. Brush and Jie Zheng and Yongqun He and Sirarat Sarntivijai and Bjoern Peters and Alexander D. Diehl and Christian J. Stoeckert Jr. and Melissa A. Haendel}, editor = {Michel Dumontier and Robert Hoehndorf and Christopher J. O. Baker}, title = {Alignment of Cultured Cell Modeling Across {OBO} Foundry Ontologies: Key Outcomes, Insights}, booktitle = {Proceedings of the 4th International Conference on Biomedical Ontology, {ICBO} 2013, Montreal, Canada, July 7-12, 2013}, series = {{CEUR} Workshop Proceedings}, volume = {1060}, pages = {120}, publisher = {CEUR-WS.org}, year = {2013}, url = {https://ceur-ws.org/Vol-1060/icbo2013\_submission\_68.pdf}, timestamp = {Fri, 10 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/icbo/BrushZHSPDSH13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biomedsem/ParikhZLSLTPSCBS12, author = {Priti Parikh and Jie Zheng and Flora J. Logan{-}Klumpler and Christian J. Stoeckert Jr. and Christos Louis and Pantelis Topalis and Anna V. Protasio and Amit P. Sheth and Mark Carrington and Matthew Berriman and Satya Sanket Sahoo}, title = {The Ontology for Parasite Lifecycle {(OPL):} towards a consistent vocabulary of lifecycle stages in parasitic organisms}, journal = {J. Biomed. Semant.}, volume = {3}, pages = {5}, year = {2012}, url = {https://doi.org/10.1186/2041-1480-3-5}, doi = {10.1186/2041-1480-3-5}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biomedsem/ParikhZLSLTPSCBS12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/StajichHBBFHKLNPSR12, author = {Jason E. Stajich and Todd W. Harris and Brian P. Brunk and John Brestelli and Steve Fischer and Omar S. Harb and Jessica C. Kissinger and Wei Li and Vishal Nayak and Deborah F. Pinney and Christian J. Stoeckert Jr. and David S. Roos}, title = {FungiDB: an integrated functional genomics database for fungi}, journal = {Nucleic Acids Res.}, volume = {40}, number = {Database-Issue}, pages = {675--681}, year = {2012}, url = {https://doi.org/10.1093/nar/gkr918}, doi = {10.1093/NAR/GKR918}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/StajichHBBFHKLNPSR12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/fois/DhamanaskarCZKSM12, author = {Alok Dhamanaskar and Michael E. Cotterell and Jie Zheng and Jessica C. Kissinger and Christian J. Stoeckert Jr. and John A. Miller}, editor = {Maureen Donnelly and Giancarlo Guizzardi}, title = {Suggestions for Galaxy Workflow Design Using Semantically Annotated Services}, booktitle = {Formal Ontology in Information Systems - Proceedings of the Seventh International Conference, {FOIS} 2012, Gray, Austria, July 24-27, 2012}, series = {Frontiers in Artificial Intelligence and Applications}, volume = {239}, pages = {29--42}, publisher = {{IOS} Press}, year = {2012}, url = {https://doi.org/10.3233/978-1-61499-084-0-29}, doi = {10.3233/978-1-61499-084-0-29}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/fois/DhamanaskarCZKSM12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icbo/ZhengXSH12, author = {Jie Zheng and Zuoshuang Xiang and Christian J. Stoeckert Jr. and Yongqun He}, editor = {Ronald Cornet and Robert Stevens}, title = {Ontodog: {A} Web-based Ontology Community View Generator}, booktitle = {Proceedings of the 3rd International Conference on Biomedical Ontology {(ICBO} 2012), {KR-MED} Series, Graz, Austria, July 21-25, 2012}, series = {{CEUR} Workshop Proceedings}, volume = {897}, publisher = {CEUR-WS.org}, year = {2012}, url = {https://ceur-ws.org/Vol-897/poster\_13.pdf}, timestamp = {Fri, 10 Mar 2023 16:22:23 +0100}, biburl = {https://dblp.org/rec/conf/icbo/ZhengXSH12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/FischerABGHKPTKRS11, author = {Steve Fischer and Cristina Aurrecoechea and Brian P. Brunk and Xin Gao and Omar S. Harb and Eileen T. Kraemer and Cary Pennington and Charles Treatman and Jessica C. Kissinger and David S. Roos and Christian J. Stoeckert Jr.}, title = {The strategies {WDK:} a graphical search interface and web development kit for functional genomics databases}, journal = {Database J. Biol. Databases Curation}, volume = {2011}, year = {2011}, url = {https://doi.org/10.1093/database/bar027}, doi = {10.1093/DATABASE/BAR027}, timestamp = {Thu, 13 Aug 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/FischerABGHKPTKRS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/ZhengSMLS11, author = {Jie Zheng and Julia Stoyanovich and Elisabetta Manduchi and Junmin Liu and Christian J. Stoeckert Jr.}, title = {AnnotCompute: annotation-based exploration and meta-analysis of genomics experiments}, journal = {Database J. Biol. Databases Curation}, volume = {2011}, year = {2011}, url = {https://doi.org/10.1093/database/bar045}, doi = {10.1093/DATABASE/BAR045}, timestamp = {Thu, 13 Aug 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/ZhengSMLS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/GrantFPLSBSHP11, author = {Gregory R. Grant and Michael H. Farkas and Angel D. Pizarro and Nicholas F. Lahens and Jonathan Schug and Brian P. Brunk and Christian J. Stoeckert Jr. and John B. Hogenesch and Eric A. Pierce}, title = {Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper {(RUM)}}, journal = {Bioinform.}, volume = {27}, number = {18}, pages = {2518--2528}, year = {2011}, url = {https://doi.org/10.1093/bioinformatics/btr427}, doi = {10.1093/BIOINFORMATICS/BTR427}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/GrantFPLSBSHP11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/AurrecoecheaBBBCFGGGGHHIKKLNPPPRSSTW11, author = {Cristina Aurrecoechea and Ana Barreto and John Brestelli and Brian P. Brunk and Elisabet V. Caler and Steve Fischer and Bindu Gajria and Xin Gao and Alan R. Gingle and Gregory R. Grant and Omar S. Harb and Mark Heiges and John Iodice and Jessica C. Kissinger and Eileen T. Kraemer and Wei Li and Vishal Nayak and Cary Pennington and Deborah F. Pinney and Brian Pitts and David S. Roos and Ganesh Srinivasamoorthy and Christian J. Stoeckert Jr. and Charles Treatman and Haiming Wang}, title = {AmoebaDB and MicrosporidiaDB: functional genomic resources for Amoebozoa and Microsporidia species}, journal = {Nucleic Acids Res.}, volume = {39}, number = {Database-Issue}, pages = {612--619}, year = {2011}, url = {https://doi.org/10.1093/nar/gkq1006}, doi = {10.1093/NAR/GKQ1006}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/AurrecoecheaBBBCFGGGGHHIKKLNPPPRSSTW11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icbo/GuttulaDWMKZS11, author = {Chaitanya Guttula and Alok Dhamanaskar and Rui Wang and John A. Miller and Jessica C. Kissinger and Jie Zheng and Christian J. Stoeckert Jr.}, editor = {Olivier Bodenreider and Maryann E. Martone and Alan Ruttenberg}, title = {Enriching the Ontology for Biomedical Investigations {(OBI)} to Improve its Suitability for Web Service Annotations}, booktitle = {Proceedings of the 2nd International Conference on Biomedical Ontology, Buffalo, NY, USA, July 26-30, 2011}, series = {{CEUR} Workshop Proceedings}, volume = {833}, publisher = {CEUR-WS.org}, year = {2011}, url = {https://ceur-ws.org/Vol-833/paper37.pdf}, timestamp = {Fri, 10 Mar 2023 16:22:24 +0100}, biburl = {https://dblp.org/rec/conf/icbo/GuttulaDWMKZS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icbo/ZhengHS11, author = {Jie Zheng and Omar S. Harb and Christian J. Stoeckert Jr.}, editor = {Olivier Bodenreider and Maryann E. Martone and Alan Ruttenberg}, title = {Ontology Driven Data Collection for EuPathDB}, booktitle = {Proceedings of the 2nd International Conference on Biomedical Ontology, Buffalo, NY, USA, July 26-30, 2011}, series = {{CEUR} Workshop Proceedings}, volume = {833}, publisher = {CEUR-WS.org}, year = {2011}, url = {https://ceur-ws.org/Vol-833/paper13.pdf}, timestamp = {Fri, 10 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/icbo/ZhengHS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ShankarPBHLMSWBSSB10, author = {Ravi Shankar and Helen E. Parkinson and Tony Burdett and Emma Hastings and Junmin Liu and Michael Miller and Rashmi Srinivasa and Joseph White and Alvis Brazma and Gavin Sherlock and Christian J. Stoeckert Jr. and Catherine A. Ball}, title = {Annotare - a tool for annotating high-throughput biomedical investigations and resulting data}, journal = {Bioinform.}, volume = {26}, number = {19}, pages = {2470--2471}, year = {2010}, url = {https://doi.org/10.1093/bioinformatics/btq462}, doi = {10.1093/BIOINFORMATICS/BTQ462}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ShankarPBHLMSWBSSB10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biomedsem/BrinkmanCDFHLMPPRRSSSTZa10, author = {Ryan Remy Brinkman and M{\'{e}}lanie Courtot and Dirk Derom and Jennifer Fostel and Yongqun He and Phillip W. Lord and James Malone and Helen E. Parkinson and Bj{\"{o}}rn Peters and Philippe Rocca{-}Serra and Alan Ruttenberg and Susanna{-}Assunta Sansone and Larisa N. Soldatova and Christian J. Stoeckert Jr. and Jessica A. Turner and Jie Zheng and et al.}, title = {Modeling biomedical experimental processes with {OBI}}, journal = {J. Biomed. Semant.}, volume = {1}, number = {{S-1}}, pages = {S7}, year = {2010}, url = {http://www.jbiomedsem.com/content/1/S1/S7}, timestamp = {Thu, 13 Aug 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biomedsem/BrinkmanCDFHLMPPRRSSSTZa10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/AurrecoecheaBBFGGGGHHIIKKLMNPPRRSSTTW10, author = {Cristina Aurrecoechea and John Brestelli and Brian P. Brunk and Steve Fischer and Bindu Gajria and Xin Gao and Alan R. Gingle and Gregory R. Grant and Omar S. Harb and Mark Heiges and Frank Innamorato and John Iodice and Jessica C. Kissinger and Eileen T. Kraemer and Wei Li and John A. Miller and Vishal Nayak and Cary Pennington and Deborah F. Pinney and David S. Roos and Chris Ross and Ganesh Srinivasamoorthy and Christian J. Stoeckert Jr. and Ryan Thibodeau and Charles Treatman and Haiming Wang}, title = {EuPathDB: a portal to eukaryotic pathogen databases}, journal = {Nucleic Acids Res.}, volume = {38}, number = {Database-Issue}, pages = {415--419}, year = {2010}, url = {https://doi.org/10.1093/nar/gkp941}, doi = {10.1093/NAR/GKP941}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/AurrecoecheaBBFGGGGHHIIKKLMNPPRRSSTTW10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/AslettAB10, author = {Martin Aslett and Cristina Aurrecoechea and Matthew Berriman and John Brestelli and Brian P. Brunk and Mark Carrington and Daniel P. Depledge and Steve Fischer and Bindu Gajria and Xin Gao and Malcolm J. Gardner and Alan R. Gingle and Gregory R. Grant and Omar S. Harb and Mark Heiges and Christiane Hertz{-}Fowler and Robin Houston and Frank Innamorato and John Iodice and Jessica C. Kissinger and Eileen T. Kraemer and Wei Li and Flora J. Logan and John A. Miller and Siddhartha Mitra and Peter J. Myler and Vishal Nayak and Cary Pennington and Isabelle Phan and Deborah F. Pinney and Gowthaman Ramasamy and Matthew B. Rogers and David S. Roos and Chris Ross and Dhileep Sivam and Deborah F. Smith and Ganesh Srinivasamoorthy and Christian J. Stoeckert Jr. and Sandhya Subramanian and Ryan Thibodeau and Adrian Tivey and Charles Treatman and Giles Velarde and Haiming Wang}, title = {TriTrypDB: a functional genomic resource for the Trypanosomatidae}, journal = {Nucleic Acids Res.}, volume = {38}, number = {Database-Issue}, pages = {457--462}, year = {2010}, url = {https://doi.org/10.1093/nar/gkp851}, doi = {10.1093/NAR/GKP851}, timestamp = {Wed, 17 Feb 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/nar/AslettAB10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/AurrecoecheaBBCDFGGGGHHIIKKLMMNPPRRSSTW09, author = {Cristina Aurrecoechea and John Brestelli and Brian P. Brunk and Jane M. Carlton and Jennifer Dommer and Steve Fischer and Bindu Gajria and Xin Gao and Alan R. Gingle and Gregory R. Grant and Omar S. Harb and Mark Heiges and Frank Innamorato and John Iodice and Jessica C. Kissinger and Eileen T. Kraemer and Wei Li and John A. Miller and Hilary G. Morrison and Vishal Nayak and Cary Pennington and Deborah F. Pinney and David S. Roos and Chris Ross and Christian J. Stoeckert Jr. and Steven Sullivan and Charles Treatman and Haiming Wang}, title = {GiardiaDB and TrichDB: integrated genomic resources for the eukaryotic protist pathogens \emph{Giardia lamblia} and \emph{Trichomonas vaginalis}}, journal = {Nucleic Acids Res.}, volume = {37}, number = {Database-Issue}, pages = {526--530}, year = {2009}, url = {https://doi.org/10.1093/nar/gkn631}, doi = {10.1093/NAR/GKN631}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/AurrecoecheaBBCDFGGGGHHIIKKLMMNPPRRSSTW09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/AurrecoecheaBBDFGGGGHHIIKKLMNPPRRSTW09, author = {Cristina Aurrecoechea and John Brestelli and Brian P. Brunk and Jennifer Dommer and Steve Fischer and Bindu Gajria and Xin Gao and Alan R. Gingle and Gregory R. Grant and Omar S. Harb and Mark Heiges and Frank Innamorato and John Iodice and Jessica C. Kissinger and Eileen T. Kraemer and Wei Li and John A. Miller and Vishal Nayak and Cary Pennington and Deborah F. Pinney and David S. Roos and Chris Ross and Christian J. Stoeckert Jr. and Charles Treatman and Haiming Wang}, title = {PlasmoDB: a functional genomic database for malaria parasites}, journal = {Nucleic Acids Res.}, volume = {37}, number = {Database-Issue}, pages = {539--543}, year = {2009}, url = {https://doi.org/10.1093/nar/gkn814}, doi = {10.1093/NAR/GKN814}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/AurrecoecheaBBDFGGGGHHIIKKLMNPPRRSTW09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/BidautS09, author = {Ghislain Bidaut and Christian J. Stoeckert Jr.}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {Characterization of Unknown Adult Stem Cell Samples by Large Scale Data Integration and Artificial Neural Networks}, booktitle = {Biocomputing 2009: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, 5-9 January 2009}, pages = {356--367}, year = {2009}, url = {http://psb.stanford.edu/psb-online/proceedings/psb09/bidaut.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/BidautS09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/GajriaBBDFGHIKMPRSWB08, author = {Bindu Gajria and Amit Bahl and John Brestelli and Jennifer Dommer and Steve Fischer and Xin Gao and Mark Heiges and John Iodice and Jessica C. Kissinger and Aaron J. Mackey and Deborah F. Pinney and David S. Roos and Christian J. Stoeckert Jr. and Haiming Wang and Brian P. Brunk}, title = {ToxoDB: an integrated \emph{Toxoplasma gondii} database resource}, journal = {Nucleic Acids Res.}, volume = {36}, number = {Database-Issue}, pages = {553--556}, year = {2008}, url = {https://doi.org/10.1093/nar/gkm981}, doi = {10.1093/NAR/GKM981}, timestamp = {Sun, 17 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/GajriaBBDFGHIKMPRSWB08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/AurrecoecheaHWWFRMKSRK07, author = {Cristina Aurrecoechea and Mark Heiges and Haiming Wang and Zhiming Wang and Steve Fischer and Philippa M. Rhodes and John A. Miller and Eileen T. Kraemer and Christian J. Stoeckert Jr. and David S. Roos and Jessica C. Kissinger}, title = {ApiDB: integrated resources for the apicomplexan bioinformatics resource center}, journal = {Nucleic Acids Res.}, volume = {35}, number = {Database-Issue}, pages = {427--430}, year = {2007}, url = {https://doi.org/10.1093/nar/gkl880}, doi = {10.1093/NAR/GKL880}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/AurrecoecheaHWWFRMKSRK07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/MazzarelliBGLMPSWKS07, author = {Joan M. Mazzarelli and John Brestelli and Regina K. Gorski and Junmin Liu and Elisabetta Manduchi and Deborah F. Pinney and Jonathan Schug and Peter White and Klaus H. Kaestner and Christian J. Stoeckert Jr.}, title = {EPConDB: a web resource for gene expression related to pancreatic development, beta-cell function and diabetes}, journal = {Nucleic Acids Res.}, volume = {35}, number = {Database-Issue}, pages = {751--755}, year = {2007}, url = {https://doi.org/10.1093/nar/gkl748}, doi = {10.1093/NAR/GKL748}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/nar/MazzarelliBGLMPSWKS07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/dils/SchugMS07, author = {Jonathan Schug and Max Mintz and Christian J. Stoeckert Jr.}, editor = {Sarah Cohen Boulakia and Val Tannen}, title = {Data Integration and Pattern-Finding in Biological Sequence with TESS's Annotation Grammar and Extraction Language (AnGEL)}, booktitle = {Data Integration in the Life Sciences, 4th International Workshop, {DILS} 2007, Philadelphia, PA, USA, June 27-29, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4544}, pages = {188--203}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-73255-6\_16}, doi = {10.1007/978-3-540-73255-6\_16}, timestamp = {Mon, 16 Sep 2019 15:28:31 +0200}, biburl = {https://dblp.org/rec/conf/dils/SchugMS07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/WhetzelPCFFFGHMRSTWJ06, author = {Patricia L. Whetzel and Helen E. Parkinson and Helen C. Causton and Liju Fan and Jennifer Fostel and Gilberto Fragoso and Laurence Game and Mervi Heiskanen and Norman Morrison and Philippe Rocca{-}Serra and Susanna{-}Assunta Sansone and Chris F. Taylor and Joseph White and Christian J. Stoeckert Jr.}, title = {The {MGED} Ontology: a resource for semantics-based description of microarray experiments}, journal = {Bioinform.}, volume = {22}, number = {7}, pages = {866--873}, year = {2006}, url = {https://doi.org/10.1093/bioinformatics/btl005}, doi = {10.1093/BIOINFORMATICS/BTL005}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/WhetzelPCFFFGHMRSTWJ06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/RaynerRSCFHILMMPQSSWWWPSBB06, author = {Tim F. Rayner and Philippe Rocca{-}Serra and Paul T. Spellman and Helen C. Causton and Anna Farne and Ele Holloway and Rafael A. Irizarry and Junmin Liu and Donald Maier and Michael Miller and Kjell Petersen and John Quackenbush and Gavin Sherlock and Christian J. Stoeckert Jr. and Joseph White and Patricia L. Whetzel and Farrell Wymore and Helen E. Parkinson and Ugis Sarkans and Catherine A. Ball and Alvis Brazma}, title = {A simple spreadsheet-based, MIAME-supportive format for microarray data: {MAGE-TAB}}, journal = {{BMC} Bioinform.}, volume = {7}, pages = {489}, year = {2006}, url = {https://doi.org/10.1186/1471-2105-7-489}, doi = {10.1186/1471-2105-7-489}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/RaynerRSCFHILMMPQSSWWWPSBB06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/ChenMSR06, author = {Feng Chen and Aaron J. Mackey and Christian J. Stoeckert Jr. and David S. Roos}, title = {OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups}, journal = {Nucleic Acids Res.}, volume = {34}, number = {Database-Issue}, pages = {363--368}, year = {2006}, url = {https://doi.org/10.1093/nar/gkj123}, doi = {10.1093/NAR/GKJ123}, timestamp = {Sun, 17 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/ChenMSR06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/GrantLS05, author = {Gregory R. Grant and Junmin Liu and Christian J. Stoeckert Jr.}, title = {A practical false discovery rate approach to identifying patterns of differential expression in microarray data}, journal = {Bioinform.}, volume = {21}, number = {11}, pages = {2684--2690}, year = {2005}, url = {https://doi.org/10.1093/bioinformatics/bti407}, doi = {10.1093/BIOINFORMATICS/BTI407}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/GrantLS05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ManduchiGHLMPWS04, author = {Elisabetta Manduchi and Gregory R. Grant and H. He and Junmin Liu and Matthew D. Mailman and Angel D. Pizarro and Patricia L. Whetzel and Christian J. Stoeckert Jr.}, title = {{RAD} and the {RAD} Study-Annotator: an approach to collection, organization and exchange of all relevant information for high-throughput gene expression studies}, journal = {Bioinform.}, volume = {20}, number = {4}, pages = {452--459}, year = {2004}, url = {https://doi.org/10.1093/bioinformatics/btg428}, doi = {10.1093/BIOINFORMATICS/BTG428}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ManduchiGHLMPWS04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/JonesHWPS04, author = {Andrew R. Jones and Ela Hunt and Jonathan M. Wastling and Angel D. Pizarro and Christian J. Stoeckert Jr.}, title = {An object model and database for functional genomics}, journal = {Bioinform.}, volume = {20}, number = {10}, pages = {1583--1590}, year = {2004}, url = {https://doi.org/10.1093/bioinformatics/bth130}, doi = {10.1093/BIOINFORMATICS/BTH130}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/JonesHWPS04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/LiCFPSSR04, author = {Li Li and Jonathan Crabtree and Steve Fischer and Deborah F. Pinney and Christian J. Stoeckert Jr. and L. David Sibley and David S. Roos}, title = {ApiEST-DB: analyzing clustered {EST} data of the apicomplexan parasites}, journal = {Nucleic Acids Res.}, volume = {32}, number = {Database-Issue}, pages = {326--328}, year = {2004}, url = {https://doi.org/10.1093/nar/gkh112}, doi = {10.1093/NAR/GKH112}, timestamp = {Sun, 17 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/LiCFPSSR04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/BahlBCFGGGGKLLMMPRSSW03, author = {Amit Bahl and Brian P. Brunk and Jonathan Crabtree and Martin J. Fraunholz and Bindu Gajria and Gregory R. Grant and Hagai Ginsburg and Dinesh Gupta and Jessica C. Kissinger and Philip Labo and Li Li and Matthew D. Mailman and Arthur J. Milgram and David S. Pearson and David S. Roos and Jonathan Schug and Christian J. Stoeckert Jr. and Patricia L. Whetzel}, title = {PlasmoDB: the Plasmodium genome resource. {A} database integrating experimental and computational data}, journal = {Nucleic Acids Res.}, volume = {31}, number = {1}, pages = {212--215}, year = {2003}, url = {https://doi.org/10.1093/nar/gkg081}, doi = {10.1093/NAR/GKG081}, timestamp = {Sun, 17 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/BahlBCFGGGGKLLMMPRSSW03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/omics/Jr03, author = {Christian J. Stoeckert Jr.}, title = {Common Objects: Think Global, Act Local}, journal = {{OMICS}}, volume = {7}, number = {1}, pages = {103--104}, year = {2003}, url = {https://doi.org/10.1089/153623103322006715}, doi = {10.1089/153623103322006715}, timestamp = {Thu, 28 Nov 2019 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/omics/Jr03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/BallSPRBCCGHHRSSSTBQ02, author = {Catherine A. Ball and Gavin Sherlock and Helen E. Parkinson and Philippe Rocca{-}Serra and Catherine Brooksbank and Helen C. Causton and Duccio Cavalieri and Terry Gaasterland and Pascal Hingamp and Frank C. P. Holstege and Martin Ringwald and Paul T. Spellman and Christian J. Stoeckert Jr. and Jason E. Stewart and Ronald C. Taylor and Alvis Brazma and John Quackenbush}, title = {An open letter to the scientific journals}, journal = {Bioinform.}, volume = {18}, number = {11}, pages = {1409}, year = {2002}, url = {https://doi.org/10.1093/bioinformatics/18.11.1409}, doi = {10.1093/BIOINFORMATICS/18.11.1409}, timestamp = {Tue, 28 Feb 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/BallSPRBCCGHHRSSSTBQ02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/isb/DavidsonS02, author = {Susan B. Davidson and Christian J. Stoeckert Jr.}, title = {In memory of Vadim Aleksandrovich Ratner}, journal = {Silico Biol.}, volume = {2}, number = {4}, pages = {523--524}, year = {2002}, url = {http://content.iospress.com/articles/in-silico-biology/isb00070}, timestamp = {Thu, 20 Aug 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/isb/DavidsonS02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/BahlBCCDFGGHKLLMMRSS03, author = {Amit Bahl and Brian P. Brunk and Ross L. Coppel and Jonathan Crabtree and Sharon J. Diskin and Martin J. Fraunholz and Gregory R. Grant and Dinesh Gupta and Robert L. Huestis and Jessica C. Kissinger and Philip Labo and Li Li and Shannon K. McWeeney and Arthur J. Milgram and David S. Roos and Jonathan Schug and Christian J. Stoeckert Jr.}, title = {PlasmoDB: the Plasmodium genome resource. An integrated database providing tools for accessing, analyzing and mapping expression and sequence data (both finished and unfinished)}, journal = {Nucleic Acids Res.}, volume = {30}, number = {1}, pages = {87--90}, year = {2002}, url = {https://doi.org/10.1093/nar/30.1.87}, doi = {10.1093/NAR/30.1.87}, timestamp = {Sun, 17 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/BahlBCCDFGGHKLLMMRSS03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/StoeckertPMGBCSSO01, author = {Christian J. Stoeckert Jr. and Angel D. Pizarro and Elisabetta Manduchi and M. Gibson and Brian P. Brunk and Jonathan Crabtree and Jonathan Schug and Shai Shen{-}Orr and G. Christian Overton}, title = {A relational schema for both array-based and {SAGE} gene expression experiments}, journal = {Bioinform.}, volume = {17}, number = {4}, pages = {300--308}, year = {2001}, url = {https://doi.org/10.1093/bioinformatics/17.4.300}, doi = {10.1093/BIOINFORMATICS/17.4.300}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/StoeckertPMGBCSSO01.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ibmsj/DavidsonCBSTOJ01, author = {Susan B. Davidson and Jonathan Crabtree and Brian P. Brunk and Jonathan Schug and Val Tannen and G. Christian Overton and Christian J. Stoeckert Jr.}, title = {K2/Kleisli and {GUS:} Experiments in integrated access to genomic data sources}, journal = {{IBM} Syst. J.}, volume = {40}, number = {2}, pages = {512--531}, year = {2001}, url = {https://doi.org/10.1147/sj.402.0512}, doi = {10.1147/SJ.402.0512}, timestamp = {Fri, 13 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ibmsj/DavidsonCBSTOJ01.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ManduchiGMOSSS00, author = {Elisabetta Manduchi and Gregory R. Grant and Steven E. McKenzie and G. Christian Overton and Saul Surrey and Christian J. Stoeckert Jr.}, title = {Generation of patterns from gene expression data by assigning confidence to differentially expressed genes}, journal = {Bioinform.}, volume = {16}, number = {8}, pages = {685--698}, year = {2000}, url = {https://doi.org/10.1093/bioinformatics/16.8.685}, doi = {10.1093/BIOINFORMATICS/16.8.685}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ManduchiGMOSSS00.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/isb/DavidsonS00, author = {Susan B. Davidson and Christian J. Stoeckert Jr.}, title = {In Memory of Chris Overton}, journal = {Silico Biol.}, volume = {1}, pages = {S27--S28}, year = {2000}, url = {http://content.iospress.com/articles/in-silico-biology/isb00021}, timestamp = {Thu, 20 Aug 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/isb/DavidsonS00.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/StoeckertSBO99, author = {Christian J. Stoeckert Jr. and Fidel Salas and Brian P. Brunk and G. Christian Overton}, title = {EpoDB: a prototype database for the analysis of genes expressed during vertebrate erythropoiesis}, journal = {Nucleic Acids Res.}, volume = {27}, number = {1}, pages = {200--203}, year = {1999}, url = {https://doi.org/10.1093/nar/27.1.200}, doi = {10.1093/NAR/27.1.200}, timestamp = {Sun, 17 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/StoeckertSBO99.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/SalasHBSO98, author = {Fidel Salas and Juergen Haas and Brian P. Brunk and Christian J. Stoeckert Jr. and G. Christian Overton}, title = {EpoDB: a database of genes expressed during vertebrate erythropoiesis}, journal = {Nucleic Acids Res.}, volume = {26}, number = {1}, pages = {288--289}, year = {1998}, url = {https://doi.org/10.1093/nar/26.1.288}, doi = {10.1093/NAR/26.1.288}, timestamp = {Sun, 17 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/SalasHBSO98.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/gcb/SalasOHS96, author = {Fidel Salas and G. Christian Overton and Juergen Haas and Christian J. Stoeckert Jr.}, title = {EpoDB: An Erythropoiesis Gene Expression Database/Knowledge Base}, booktitle = {Proceedings of the German Conference on Bioinformatics, {GCB} 1996, Leipzig, Germany, September 30 - October 2, 1996}, pages = {40--45}, year = {1996}, timestamp = {Sat, 07 Sep 2019 11:59:23 +0200}, biburl = {https://dblp.org/rec/conf/gcb/SalasOHS96.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/gcb/SalasHOS96, author = {Fidel Salas and Juergen Haas and G. Christian Overton and Christian J. Stoeckert Jr.}, editor = {Ralf Hofest{\"{a}}dt and Thomas Lengauer and Markus L{\"{o}}ffler and Dietmar Schomburg}, title = {EpoDB: An Erythropoiesis Gene Expression Database in Progress}, booktitle = {Bioinformatics, German Conference on Bioinformatics, Leipzig, Germany, September 30 - October 2, 1996, Selected Papers}, series = {Lecture Notes in Computer Science}, volume = {1278}, pages = {52--61}, publisher = {Springer}, year = {1996}, url = {https://doi.org/10.1007/BFb0033203}, doi = {10.1007/BFB0033203}, timestamp = {Tue, 14 May 2019 10:00:42 +0200}, biburl = {https://dblp.org/rec/conf/gcb/SalasHOS96.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
manage site settings
To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.