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ORCIDBibTeX records: Paul Stothard
@article{DBLP:journals/nar/WishartHSOPGSG23,
author = {David S. Wishart and
Scott Han and
Sukanta Saha and
Eponine Oler and
Harrison Peters and
Jason R. Grant and
Paul Stothard and
Vasuk Gautam},
title = {{PHASTEST:} faster than PHASTER, better than {PHAST}},
journal = {Nucleic Acids Res.},
volume = {51},
number = {{W1}},
pages = {443--450},
year = {2023},
url = {https://doi.org/10.1093/nar/gkad382},
doi = {10.1093/NAR/GKAD382},
timestamp = {Fri, 18 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WishartHSOPGSG23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WishartRLSGSSKOPG23,
author = {David S. Wishart and
Leah Ren and
Jacques Leong{-}Sit and
Sukanta Saha and
Jason R. Grant and
Paul Stothard and
Upasana Singh and
Abby Kropielnicki and
Eponine Oler and
Harrison Peters and
Vasuk Gautam},
title = {PlasMapper 3.0 - a web server for generating, editing, annotating
and visualizing publication quality plasmid maps},
journal = {Nucleic Acids Res.},
volume = {51},
number = {{W1}},
pages = {459--467},
year = {2023},
url = {https://doi.org/10.1093/nar/gkad276},
doi = {10.1093/NAR/GKAD276},
timestamp = {Fri, 18 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WishartRLSGSSKOPG23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GrantEMMHCGDS23,
author = {Jason R. Grant and
Eric Enns and
Eric Marinier and
Arnab Mandal and
Emily K. Herman and
Chih{-}yu Chen and
Morag Graham and
Gary H. Van Domselaar and
Paul Stothard},
title = {Proksee: in-depth characterization and visualization of bacterial
genomes},
journal = {Nucleic Acids Res.},
volume = {51},
number = {{W1}},
pages = {484--492},
year = {2023},
url = {https://doi.org/10.1093/nar/gkad326},
doi = {10.1093/NAR/GKAD326},
timestamp = {Fri, 18 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GrantEMMHCGDS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/StothardGD19,
author = {Paul Stothard and
Jason R. Grant and
Gary H. Van Domselaar},
title = {Visualizing and comparing circular genomes using the CGView family
of tools},
journal = {Briefings Bioinform.},
volume = {20},
number = {4},
pages = {1576--1582},
year = {2019},
url = {https://doi.org/10.1093/bib/bbx081},
doi = {10.1093/BIB/BBX081},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/StothardGD19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WangWSL15,
author = {Yining Wang and
Tim Wylie and
Paul Stothard and
Guohui Lin},
title = {Whole genome {SNP} genotype piecemeal imputation},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {340:1--340:11},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0770-2},
doi = {10.1186/S12859-015-0770-2},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WangWSL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CruzLLZWDSDW12,
author = {Joseph A. Cruz and
Yifeng Liu and
Yongjie Liang and
You Zhou and
Michael Wilson and
Jonathan J. Dennis and
Paul Stothard and
Gary H. Van Domselaar and
David S. Wishart},
title = {BacMap: an up-to-date electronic atlas of annotated bacterial genomes},
journal = {Nucleic Acids Res.},
volume = {40},
number = {Database-Issue},
pages = {599--604},
year = {2012},
url = {https://doi.org/10.1093/nar/gkr1105},
doi = {10.1093/NAR/GKR1105},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/CruzLLZWDSDW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GrantALS11,
author = {Jason R. Grant and
Adriano S. Arantes and
Xiaoping Liao and
Paul Stothard},
title = {In-depth annotation of SNPs arising from resequencing projects using
{NGS-SNP}},
journal = {Bioinform.},
volume = {27},
number = {16},
pages = {2300--2301},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr372},
doi = {10.1093/BIOINFORMATICS/BTR372},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GrantALS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PetkauSSD10,
author = {Aaron J. Petkau and
Matthew Stuart{-}Edwards and
Paul Stothard and
Gary H. Van Domselaar},
title = {Interactive microbial genome visualization with GView},
journal = {Bioinform.},
volume = {26},
number = {24},
pages = {3125--3126},
year = {2010},
url = {https://doi.org/10.1093/bioinformatics/btq588},
doi = {10.1093/BIOINFORMATICS/BTQ588},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PetkauSSD10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BerjanskiiLZTSZCMLLW10,
author = {Mark V. Berjanskii and
Yongjie Liang and
Jianjun Zhou and
Peter Tang and
Paul Stothard and
You Zhou and
Joseph A. Cruz and
Cam Macdonell and
Guohui Lin and
Paul Lu and
David S. Wishart},
title = {{PROSESS:} a protein structure evaluation suite and server},
journal = {Nucleic Acids Res.},
volume = {38},
number = {Web-Server-Issue},
pages = {633--640},
year = {2010},
url = {https://doi.org/10.1093/nar/gkq375},
doi = {10.1093/NAR/GKQ375},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BerjanskiiLZTSZCMLLW10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CaiSWGWXSL09,
author = {Zhipeng Cai and
Hadi Sabaa and
Yining Wang and
Randy Goebel and
Zhiquan Wang and
Jiaofen Xu and
Paul Stothard and
Guohui Lin},
title = {Most parsimonious haplotype allele sharing determination},
journal = {{BMC} Bioinform.},
volume = {10},
year = {2009},
url = {https://doi.org/10.1186/1471-2105-10-115},
doi = {10.1186/1471-2105-10-115},
timestamp = {Wed, 30 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/CaiSWGWXSL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GrantS08,
author = {Jason R. Grant and
Paul Stothard},
title = {The CGView Server: a comparative genomics tool for circular genomes},
journal = {Nucleic Acids Res.},
volume = {36},
number = {Web-Server-Issue},
pages = {181--184},
year = {2008},
url = {https://doi.org/10.1093/nar/gkn179},
doi = {10.1093/NAR/GKN179},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GrantS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ChengKYSDW08,
author = {Dean Cheng and
Craig Knox and
Nelson Young and
Paul Stothard and
Sambasivarao Damaraju and
David S. Wishart},
title = {PolySearch: a web-based text mining system for extracting relationships
between human diseases, genes, mutations, drugs and metabolites},
journal = {Nucleic Acids Res.},
volume = {36},
number = {Web-Server-Issue},
pages = {399--405},
year = {2008},
url = {https://doi.org/10.1093/nar/gkn296},
doi = {10.1093/NAR/GKN296},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ChengKYSDW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WishartTKEGYCJASFNLCFTSJSABHWMCGGZDMWDBCGLMSVQ07,
author = {David S. Wishart and
Dan Tzur and
Craig Knox and
Roman Eisner and
Anchi Guo and
Nelson Young and
Dean Cheng and
Kevin Jewell and
David Arndt and
Summit Sawhney and
Chris Fung and
Lisa Nikolai and
Mike Lewis and
Marie{-}Aude Coutouly and
Ian J. Forsythe and
Peter Tang and
Savita Shrivastava and
Kevin Jeroncic and
Paul Stothard and
Godwin Amegbey and
David Block and
David D. Hau and
James Wagner and
Jessica Miniaci and
Melisa Clements and
Mulu Gebremedhin and
Natalie Guo and
Ying Zhang and
Gavin E. Duggan and
Glen D. MacInnis and
Alim M. Weljie and
Reza Dowlatabadi and
Fiona Bamforth and
Derrick Clive and
Russell Greiner and
Liang Li and
Tom Marrie and
Brian D. Sykes and
Hans J. Vogel and
Lori Querengesser},
title = {{HMDB:} the Human Metabolome Database},
journal = {Nucleic Acids Res.},
volume = {35},
number = {Database-Issue},
pages = {521--526},
year = {2007},
url = {https://doi.org/10.1093/nar/gkl923},
doi = {10.1093/NAR/GKL923},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WishartTKEGYCJASFNLCFTSJSABHWMCGGZDMWDBCGLMSVQ07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/KnoxSSEW07,
author = {Craig Knox and
Savita Shrivastava and
Paul Stothard and
Roman Eisner and
David S. Wishart},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany Murray and
Teri E. Klein},
title = {Biospider: {A} Web Server for Automating Metabolome Annotations},
booktitle = {Biocomputing 2007, Proceedings of the Pacific Symposium, Maui, Hawaii,
USA, 3-7 January 2007},
pages = {145--156},
publisher = {World Scientific},
year = {2007},
url = {http://psb.stanford.edu/psb-online/proceedings/psb07/knox.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/KnoxSSEW07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WishartKGSHSCW06,
author = {David S. Wishart and
Craig Knox and
Anchi Guo and
Savita Shrivastava and
Murtaza Hassanali and
Paul Stothard and
Zhan Chang and
Jennifer Woolsey},
title = {DrugBank: a comprehensive resource for \emph{in silico} drug discovery
and exploration},
journal = {Nucleic Acids Res.},
volume = {34},
number = {Database-Issue},
pages = {668--672},
year = {2006},
url = {https://doi.org/10.1093/nar/gkj067},
doi = {10.1093/NAR/GKJ067},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WishartKGSHSCW06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/StothardW05,
author = {Paul Stothard and
David S. Wishart},
title = {Circular genome visualization and exploration using CGView},
journal = {Bioinform.},
volume = {21},
number = {4},
pages = {537--539},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti054},
doi = {10.1093/BIOINFORMATICS/BTI054},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/StothardW05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/StothardDSGOCEW05,
author = {Paul Stothard and
Gary H. Van Domselaar and
Savita Shrivastava and
Anchi Guo and
Brian O'Neill and
Joseph A. Cruz and
Michael Ellison and
David S. Wishart},
title = {BacMap: an interactive picture atlas of annotated bacterial genomes},
journal = {Nucleic Acids Res.},
volume = {33},
number = {Database-Issue},
pages = {317--320},
year = {2005},
url = {https://doi.org/10.1093/nar/gki075},
doi = {10.1093/NAR/GKI075},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/StothardDSGOCEW05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/DomselaarSSCGDLSGW05,
author = {Gary H. Van Domselaar and
Paul Stothard and
Savita Shrivastava and
Joseph A. Cruz and
Anchi Guo and
Xiaoli Dong and
Paul Lu and
Duane Szafron and
Russell Greiner and
David S. Wishart},
title = {BASys: a web server for automated bacterial genome annotation},
journal = {Nucleic Acids Res.},
volume = {33},
number = {Web-Server-Issue},
pages = {455--459},
year = {2005},
url = {https://doi.org/10.1093/nar/gki593},
doi = {10.1093/NAR/GKI593},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/DomselaarSSCGDLSGW05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SundararajGHRSEW04,
author = {Shan Sundararaj and
Anchi Guo and
Bahram Habibi{-}Nazhad and
Melania Rouani and
Paul Stothard and
Michael Ellison and
David S. Wishart},
title = {The CyberCell Database {(CCDB):} a comprehensive, self-updating, relational
database to coordinate and facilitate in silico modeling of Escherichia
coli},
journal = {Nucleic Acids Res.},
volume = {32},
number = {Database-Issue},
pages = {293--295},
year = {2004},
url = {https://doi.org/10.1093/nar/gkh108},
doi = {10.1093/NAR/GKH108},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SundararajGHRSEW04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/DongSFW04,
author = {Xiaoli Dong and
Paul Stothard and
Ian J. Forsythe and
David S. Wishart},
title = {PlasMapper: a web server for drawing and auto-annotating plasmid maps},
journal = {Nucleic Acids Res.},
volume = {32},
number = {Web-Server-Issue},
pages = {660--664},
year = {2004},
url = {https://doi.org/10.1093/nar/gkh410},
doi = {10.1093/NAR/GKH410},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/DongSFW04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Stothard01,
author = {P. M. Stothard},
title = {{COMBOSA3D:} combining sequence alignments with three-dimensional
structures},
journal = {Bioinform.},
volume = {17},
number = {1},
pages = {198--199},
year = {2001},
url = {https://doi.org/10.1093/bioinformatics/17.2.198},
doi = {10.1093/BIOINFORMATICS/17.2.198},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Stothard01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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