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ORCIDBibTeX records: Dongjun Yu
@article{DBLP:journals/bib/LiLSYSY24,
author = {Shuo Li and
Yan Liu and
Long{-}Chen Shen and
He Yan and
Jiangning Song and
Dong{-}Jun Yu},
title = {{GMFGRN:} a matrix factorization and graph neural network approach
for gene regulatory network inference},
journal = {Briefings Bioinform.},
volume = {25},
number = {2},
year = {2024},
url = {https://doi.org/10.1093/bib/bbad529},
doi = {10.1093/BIB/BBAD529},
timestamp = {Sat, 16 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/LiLSYSY24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhuLLJY24,
author = {Yi{-}Heng Zhu and
Zi Liu and
Yan Liu and
Zhiwei Ji and
Dong{-}Jun Yu},
title = {{ULDNA:} integrating unsupervised multi-source language models with
LSTM-attention network for high-accuracy protein-DNA binding site
prediction},
journal = {Briefings Bioinform.},
volume = {25},
number = {2},
year = {2024},
url = {https://doi.org/10.1093/bib/bbae040},
doi = {10.1093/BIB/BBAE040},
timestamp = {Sat, 16 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/ZhuLLJY24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isci/YanLLYYQ24,
author = {He Yan and
Yan Liu and
Yanmeng Li and
Qiaolin Ye and
Dong{-}Jun Yu and
Yong Qi},
title = {Robust {GEPSVM} classifier: An efficient iterative optimization framework},
journal = {Inf. Sci.},
volume = {657},
pages = {119986},
year = {2024},
url = {https://doi.org/10.1016/j.ins.2023.119986},
doi = {10.1016/J.INS.2023.119986},
timestamp = {Fri, 26 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/isci/YanLLYYQ24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/LiuZZ0Y24,
author = {Zi Liu and
Chengxin Zhang and
Qidi Zhang and
Yang Zhang and
Dong{-}Jun Yu},
title = {TM-search: An Efficient and Effective Tool for Protein Structure Database
Search},
journal = {J. Chem. Inf. Model.},
volume = {64},
number = {3},
pages = {1043--1049},
year = {2024},
url = {https://doi.org/10.1021/acs.jcim.3c01455},
doi = {10.1021/ACS.JCIM.3C01455},
timestamp = {Thu, 29 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcisd/LiuZZ0Y24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/ZhangGGY24,
author = {Ming Zhang and
Chao Gong and
Fang Ge and
Dong{-}Jun Yu},
title = {FCMSTrans: Accurate Prediction of Disease-Associated nsSNPs by Utilizing
Multiscale Convolution and Deep Feature Combination within a Transformer
Framework},
journal = {J. Chem. Inf. Model.},
volume = {64},
number = {4},
pages = {1394--1406},
year = {2024},
url = {https://doi.org/10.1021/acs.jcim.3c02025},
doi = {10.1021/ACS.JCIM.3C02025},
timestamp = {Mon, 01 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcisd/ZhangGGY24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/YanGLZLSY24,
author = {Zihao Yan and
Fang Ge and
Yan Liu and
Yumeng Zhang and
Fuyi Li and
Jiangning Song and
Dong{-}Jun Yu},
title = {TransEFVP: {A} Two-Stage Approach for the Prediction of Human Pathogenic
Variants Based on Protein Sequence Embedding Fusion},
journal = {J. Chem. Inf. Model.},
volume = {64},
number = {4},
pages = {1407--1418},
year = {2024},
url = {https://doi.org/10.1021/acs.jcim.3c02019},
doi = {10.1021/ACS.JCIM.3C02019},
timestamp = {Mon, 01 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcisd/YanGLZLSY24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/apin/YanCYYQ23,
author = {He Yan and
Li Cheng and
Qiaolin Ye and
Dong{-}Jun Yu and
Yong Qi},
title = {Robust generalized canonical correlation analysis},
journal = {Appl. Intell.},
volume = {53},
number = {18},
pages = {21140--21155},
year = {2023},
url = {https://doi.org/10.1007/s10489-023-04666-6},
doi = {10.1007/S10489-023-04666-6},
timestamp = {Sun, 24 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/apin/YanCYYQ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/GeLIALTYWXSY23,
author = {Fang Ge and
Chen Li and
Shahid Iqbal and
Muhammad Arif and
Fuyi Li and
Maha A. Thafar and
Zihao Yan and
Apilak Worachartcheewan and
Xiaofeng Xu and
Jiangning Song and
Dong{-}Jun Yu},
title = {VPatho: a deep learning-based two-stage approach for accurate prediction
of gain-of-function and loss-of-function variants},
journal = {Briefings Bioinform.},
volume = {24},
number = {1},
year = {2023},
url = {https://doi.org/10.1093/bib/bbac535},
doi = {10.1093/BIB/BBAC535},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/GeLIALTYWXSY23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiuWLSGSCY23,
author = {Yan Liu and
Guo Wei and
Chen Li and
Long{-}Chen Shen and
Robin B. Gasser and
Jiangning Song and
Dijun Chen and
Dong{-}Jun Yu},
title = {TripletCell: a deep metric learning framework for accurate annotation
of cell types at the single-cell level},
journal = {Briefings Bioinform.},
volume = {24},
number = {3},
year = {2023},
url = {https://doi.org/10.1093/bib/bbad132},
doi = {10.1093/BIB/BBAD132},
timestamp = {Tue, 02 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/LiuWLSGSCY23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/UllahHSY23,
author = {Matee Ullah and
Fazal Hadi and
Jiangning Song and
Dong{-}Jun Yu},
title = {PScL-2LSAESM: bioimage-based prediction of protein subcellular localization
by integrating heterogeneous features with the two-level {SAE-SM}
and mean ensemble method},
journal = {Bioinform.},
volume = {39},
number = {1},
year = {2023},
url = {https://doi.org/10.1093/bioinformatics/btac727},
doi = {10.1093/BIOINFORMATICS/BTAC727},
timestamp = {Fri, 22 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/UllahHSY23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WuDZPCZSY23,
author = {Qunzhuo Wu and
Zhaohong Deng and
Wei Zhang and
Xiaoyong Pan and
Kup{-}Sze Choi and
Yun Zuo and
Hong{-}Bin Shen and
Dong{-}Jun Yu},
title = {{MLNGCF:} circRNA-disease associations prediction with multilayer
attention neural graph-based collaborative filtering},
journal = {Bioinform.},
volume = {39},
number = {8},
year = {2023},
url = {https://doi.org/10.1093/bioinformatics/btad499},
doi = {10.1093/BIOINFORMATICS/BTAD499},
timestamp = {Fri, 22 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WuDZPCZSY23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangWZLGSY23,
author = {Ying Zhang and
Zhikang Wang and
Yiwen Zhang and
Shanshan Li and
Yuming Guo and
Jiangning Song and
Dong{-}Jun Yu},
title = {Interpretable prediction models for widespread m6A {RNA} modification
across cell lines and tissues},
journal = {Bioinform.},
volume = {39},
number = {12},
year = {2023},
url = {https://doi.org/10.1093/bioinformatics/btad709},
doi = {10.1093/BIOINFORMATICS/BTAD709},
timestamp = {Fri, 15 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangWZLGSY23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cbm/LiuZSXQY23,
author = {Zi Liu and
Yi{-}Heng Zhu and
Long{-}Chen Shen and
Xuan Xiao and
Wangren Qiu and
Dong{-}Jun Yu},
title = {Integrating unsupervised language model with multi-view multiple sequence
alignments for high-accuracy inter-chain contact prediction},
journal = {Comput. Biol. Medicine},
volume = {166},
pages = {107529},
year = {2023},
url = {https://doi.org/10.1016/j.compbiomed.2023.107529},
doi = {10.1016/J.COMPBIOMED.2023.107529},
timestamp = {Tue, 28 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/cbm/LiuZSXQY23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/eaai/BaWYYY23,
author = {Jing Ba and
Pingxin Wang and
Xibei Yang and
Hualong Yu and
Dongjun Yu},
title = {Glee: {A} granularity filter for feature selection},
journal = {Eng. Appl. Artif. Intell.},
volume = {122},
pages = {106080},
year = {2023},
url = {https://doi.org/10.1016/j.engappai.2023.106080},
doi = {10.1016/J.ENGAPPAI.2023.106080},
timestamp = {Thu, 05 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/eaai/BaWYYY23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/LiuYSY23,
author = {Yan Liu and
He Yan and
Long{-}Chen Shen and
Dong{-}Jun Yu},
title = {Learning Cell Annotation under Multiple Reference Datasets by Multisource
Domain Adaptation},
journal = {J. Chem. Inf. Model.},
volume = {63},
number = {1},
pages = {397--405},
year = {2023},
url = {https://doi.org/10.1021/acs.jcim.2c01277},
doi = {10.1021/ACS.JCIM.2C01277},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcisd/LiuYSY23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/HuZJAYZ23,
author = {Jun Hu and
Wen{-}Wu Zeng and
Ning{-}Xin Jia and
Muhammad Arif and
Dong{-}Jun Yu and
Gui{-}Jun Zhang},
title = {Improving DNA-Binding Protein Prediction Using Three-Part Sequence-Order
Feature Extraction and a Deep Neural Network Algorithm},
journal = {J. Chem. Inf. Model.},
volume = {63},
number = {3},
pages = {1044--1057},
year = {2023},
url = {https://doi.org/10.1021/acs.jcim.2c00943},
doi = {10.1021/ACS.JCIM.2C00943},
timestamp = {Sat, 25 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcisd/HuZJAYZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/GeAYAWYS23,
author = {Fang Ge and
Muhammad Arif and
Zihao Yan and
Hanin H. Alahmadi and
Apilak Worachartcheewan and
Dong{-}Jun Yu and
Watshara Shoombuatong},
title = {MMPatho: Leveraging Multilevel Consensus and Evolutionary Information
for Enhanced Missense Mutation Pathogenic Prediction},
journal = {J. Chem. Inf. Model.},
volume = {63},
number = {22},
pages = {7239--7257},
year = {2023},
url = {https://doi.org/10.1021/acs.jcim.3c00950},
doi = {10.1021/ACS.JCIM.3C00950},
timestamp = {Sun, 31 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcisd/GeAYAWYS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HuaSFWKY23,
author = {Yang Hua and
Xiaoning Song and
Zhen{-}Hua Feng and
Xiaojun Wu and
Josef Kittler and
Dong{-}Jun Yu},
title = {CPInformer for Efficient and Robust Compound-Protein Interaction Prediction},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {1},
pages = {285--296},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3144008},
doi = {10.1109/TCBB.2022.3144008},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HuaSFWKY23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangGLYSY23,
author = {Ying Zhang and
Fang Ge and
Fuyi Li and
Xibei Yang and
Jiangning Song and
Dong{-}Jun Yu},
title = {Prediction of Multiple Types of {RNA} Modifications via Biological
Language Model},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {5},
pages = {3205--3214},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2023.3283985},
doi = {10.1109/TCBB.2023.3283985},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangGLYSY23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/GeZXASY22,
author = {Fang Ge and
Ying Zhang and
Jian Xu and
Muhammad Arif and
Jiangning Song and
Dong{-}Jun Yu},
title = {Prediction of disease-associated nsSNPs by integrating multi-scale
ResNet models with deep feature fusion},
journal = {Briefings Bioinform.},
volume = {23},
number = {1},
year = {2022},
url = {https://doi.org/10.1093/bib/bbab530},
doi = {10.1093/BIB/BBAB530},
timestamp = {Tue, 15 Nov 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/GeZXASY22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/HanSZXSY22,
author = {Ke Han and
Long{-}Chen Shen and
Yi{-}Heng Zhu and
Jian Xu and
Jiangning Song and
Dong{-}Jun Yu},
title = {MAResNet: predicting transcription factor binding sites by combining
multi-scale bottom-up and top-down attention and residual network},
journal = {Briefings Bioinform.},
volume = {23},
number = {1},
year = {2022},
url = {https://doi.org/10.1093/bib/bbab445},
doi = {10.1093/BIB/BBAB445},
timestamp = {Tue, 15 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/HanSZXSY22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WuDPSCWWY22,
author = {Qunzhuo Wu and
Zhaohong Deng and
Xiaoyong Pan and
Hong{-}Bin Shen and
Kup{-}Sze Choi and
Shitong Wang and
Jing Wu and
Dong{-}Jun Yu},
title = {{MDGF-MCEC:} a multi-view dual attention embedding model with cooperative
ensemble learning for CircRNA-disease association prediction},
journal = {Briefings Bioinform.},
volume = {23},
number = {5},
year = {2022},
url = {https://doi.org/10.1093/bib/bbac289},
doi = {10.1093/BIB/BBAC289},
timestamp = {Fri, 21 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/WuDPSCWWY22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RaoJHYZ22,
author = {Liang Rao and
Ning{-}Xin Jia and
Jun Hu and
Dong{-}Jun Yu and
Gui{-}Jun Zhang},
title = {ATPdock: a template-based method for ATP-specific protein-ligand docking},
journal = {Bioinform.},
volume = {38},
number = {2},
pages = {556--558},
year = {2022},
url = {https://doi.org/10.1093/bioinformatics/btab667},
doi = {10.1093/BIOINFORMATICS/BTAB667},
timestamp = {Fri, 21 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RaoJHYZ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/UllahHSY22,
author = {Matee Ullah and
Fazal Hadi and
Jiangning Song and
Dong{-}Jun Yu},
title = {PScL-DDCFPred: an ensemble deep learning-based approach for characterizing
multiclass subcellular localization of human proteins from bioimage
data},
journal = {Bioinform.},
volume = {38},
number = {16},
pages = {4019--4026},
year = {2022},
url = {https://doi.org/10.1093/bioinformatics/btac432},
doi = {10.1093/BIOINFORMATICS/BTAC432},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/UllahHSY22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fgcs/YanFQYY22,
author = {He Yan and
Liyong Fu and
Yong Qi and
Dong{-}Jun Yu and
Qiaolin Ye},
title = {Robust ensemble method for short-term traffic flow prediction},
journal = {Future Gener. Comput. Syst.},
volume = {133},
pages = {395--410},
year = {2022},
url = {https://doi.org/10.1016/j.future.2022.03.034},
doi = {10.1016/J.FUTURE.2022.03.034},
timestamp = {Wed, 18 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/fgcs/YanFQYY22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpb/ZhuZLOFYZ22,
author = {Yi{-}Heng Zhu and
Chengxin Zhang and
Yan Liu and
Gilbert S. Omenn and
Peter L. Freddolino and
Dong{-}Jun Yu and
Yang Zhang},
title = {TripletGO: Integrating Transcript Expression Profiles with Protein
Homology Inferences for Gene Function Prediction},
journal = {Genom. Proteom. Bioinform.},
volume = {20},
number = {5},
pages = {1013--1027},
year = {2022},
url = {https://doi.org/10.1016/j.gpb.2022.03.001},
doi = {10.1016/J.GPB.2022.03.001},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/gpb/ZhuZLOFYZ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/ZhangYLXSY22,
author = {Lu{-}Xing Zhang and
He Yan and
Yan Liu and
Jian Xu and
Jiangning Song and
Dong{-}Jun Yu},
title = {Enhancing Characteristic Gene Selection and Tumor Classification by
the Robust Laplacian Supervised Discriminative Sparse {PCA}},
journal = {J. Chem. Inf. Model.},
volume = {62},
number = {7},
pages = {1794--1807},
year = {2022},
url = {https://doi.org/10.1021/acs.jcim.1c01403},
doi = {10.1021/ACS.JCIM.1C01403},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcisd/ZhangYLXSY22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/IqbalGLAZGYWS22,
author = {Shahid Iqbal and
Fang Ge and
Fuyi Li and
Tatsuya Akutsu and
Yuanting Zheng and
Robin B. Gasser and
Dong{-}Jun Yu and
Geoffrey I. Webb and
Jiangning Song},
title = {{PROST:} AlphaFold2-aware Sequence-Based Predictor to Estimate Protein
Stability Changes upon Missense Mutations},
journal = {J. Chem. Inf. Model.},
volume = {62},
number = {17},
pages = {4270--4282},
year = {2022},
url = {https://doi.org/10.1021/acs.jcim.2c00799},
doi = {10.1021/ACS.JCIM.2C00799},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcisd/IqbalGLAZGYWS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/ZhuLWYY22,
author = {Guan{-}Yu Zhu and
Yan Liu and
Peng{-}Hao Wang and
Xibei Yang and
Dong{-}Jun Yu},
title = {Learning Protein Embedding to Improve Protein Fold Recognition Using
Deep Metric Learning},
journal = {J. Chem. Inf. Model.},
volume = {62},
number = {17},
pages = {4283--4291},
year = {2022},
url = {https://doi.org/10.1021/acs.jcim.2c00959},
doi = {10.1021/ACS.JCIM.2C00959},
timestamp = {Tue, 18 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcisd/ZhuLWYY22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/kbs/YanFQCYY22,
author = {He Yan and
Liyong Fu and
Yong Qi and
Li Cheng and
Qiaolin Ye and
Dong{-}Jun Yu},
title = {Learning a robust classifier for short-term traffic state prediction},
journal = {Knowl. Based Syst.},
volume = {242},
pages = {108368},
year = {2022},
url = {https://doi.org/10.1016/j.knosys.2022.108368},
doi = {10.1016/J.KNOSYS.2022.108368},
timestamp = {Wed, 27 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/kbs/YanFQCYY22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/ZhuZYZ22,
author = {Yi{-}Heng Zhu and
Chengxin Zhang and
Dong{-}Jun Yu and
Yang Zhang},
title = {Integrating unsupervised language model with triplet neural networks
for protein gene ontology prediction},
journal = {PLoS Comput. Biol.},
volume = {18},
number = {12},
pages = {1010793},
year = {2022},
url = {https://doi.org/10.1371/journal.pcbi.1010793},
doi = {10.1371/JOURNAL.PCBI.1010793},
timestamp = {Wed, 17 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/ZhuZYZ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/pr/YanFZHYQY22,
author = {He Yan and
Liyong Fu and
Tian'an Zhang and
Jun Hu and
Qiaolin Ye and
Yong Qi and
Dong{-}Jun Yu},
title = {Robust distance metric optimization driven {GEPSVM} classifier for
pattern classification},
journal = {Pattern Recognit.},
volume = {129},
pages = {108779},
year = {2022},
url = {https://doi.org/10.1016/j.patcog.2022.108779},
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Saeed Ahmed and
Abid Khan and
Fang Ge and
Adel Khelifi and
Dong{-}Jun Yu},
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Cell-Penetrating Peptides and Their Uptake Efficiencies},
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Yan{-}Song Bai and
Lin{-}Lin Zheng and
Ning{-}Xin Jia and
Dong{-}Jun Yu and
Gui{-}Jun Zhang},
title = {Protein-DNA Binding Residue Prediction via Bagging Strategy and Sequence-Based
Cube-Format Feature},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
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journal = {Briefings Bioinform.},
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Andr{\'{e}} Leier and
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Jian Li and
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Jiangning Song},
title = {Comprehensive assessment of machine learning-based methods for predicting
antimicrobial peptides},
journal = {Briefings Bioinform.},
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journal = {Briefings Bioinform.},
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deep learning},
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Jian Xu and
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in human tissue using ensemble learning of handcrafted and deep learned
features with two-layer feature selection},
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Gui{-}Jun Zhang and
Dong{-}Jun Yu},
title = {TargetDBP+: Enhancing the Performance of Identifying DNA-Binding Proteins
via Weighted Convolutional Features},
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author = {Yang Li and
Chengxin Zhang and
Eric W. Bell and
Wei Zheng and
Xiaogen Zhou and
Dong{-}Jun Yu and
Yang Zhang},
title = {Deducing high-accuracy protein contact-maps from a triplet of coevolutionary
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author = {Xiaoning Song and
Yao Chen and
Zhen{-}Hua Feng and
Guosheng Hu and
Dong{-}Jun Yu and
Xiaojun Wu},
title = {{SP-GAN:} Self-Growing and Pruning Generative Adversarial Networks},
journal = {{IEEE} Trans. Neural Networks Learn. Syst.},
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number = {6},
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author = {Muhammad Arif and
Saeed Ahmad and
Farman Ali and
Ge Fang and
Min Li and
Dong{-}Jun Yu},
title = {TargetCPP: accurate prediction of cell-penetrating peptides from optimized
multi-scale features using gradient boost decision tree},
journal = {J. Comput. Aided Mol. Des.},
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pages = {841--856},
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author = {Ming{-}Cai Chen and
Yang Li and
Yi{-}Heng Zhu and
Fang Ge and
Dong{-}Jun Yu},
title = {SSCpred: Single-Sequence-Based Protein Contact Prediction Using Deep
Fully Convolutional Network},
journal = {J. Chem. Inf. Model.},
volume = {60},
number = {6},
pages = {3295--3303},
year = {2020},
url = {https://doi.org/10.1021/acs.jcim.9b01207},
doi = {10.1021/ACS.JCIM.9B01207},
timestamp = {Tue, 29 Mar 2022 01:00:00 +0200},
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author = {Jun Hu and
Xiaogen Zhou and
Yi{-}Heng Zhu and
Dong{-}Jun Yu and
Gui{-}Jun Zhang},
title = {TargetDBP: Accurate DNA-Binding Protein Prediction Via Sequence-Based
Multi-View Feature Learning},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
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number = {4},
pages = {1419--1429},
year = {2020},
url = {https://doi.org/10.1109/TCBB.2019.2893634},
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author = {Yanchao Li and
Yongli Wang and
Dong{-}Jun Yu and
Ning Ye and
Peng Hu and
Ruxin Zhao},
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Jun Hu and
Chengxin Zhang and
Dong{-}Jun Yu and
Yang Zhang},
title = {ResPRE: high-accuracy protein contact prediction by coupling precision
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author = {Yi{-}Heng Zhu and
Jun Hu and
Xiaoning Song and
Dong{-}Jun Yu},
title = {DNAPred: Accurate Identification of DNA-Binding Sites from Protein
Sequence by Ensembled Hyperplane-Distance-Based Support Vector Machines},
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author = {He Yan and
Qiaolin Ye and
Dong{-}Jun Yu},
title = {Efficient and robust {TWSVM} classification via a minimum L1-norm
distance metric criterion},
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Jinhai Li and
Pingxin Wang and
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author = {Xiaoning Song and
Guosheng Hu and
Jian{-}Hao Luo and
Zhen{-}Hua Feng and
Dong{-}Jun Yu and
Xiao{-}Jun Wu},
title = {Fast {SRC} using quadratic optimisation in downsized coefficient solution
subspace},
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year = {2019},
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author = {Xiao{-}Rong Bao and
Yi{-}Heng Zhu and
Dong{-}Jun Yu},
editor = {Zhen Cui and
Jinshan Pan and
Shanshan Zhang and
Liang Xiao and
Jian Yang},
title = {DeepTF: Accurate Prediction of Transcription Factor Binding Sites
by Combining Multi-scale Convolution and Long Short-Term Memory Neural
Network},
booktitle = {Intelligence Science and Big Data Engineering. Big Data and Machine
Learning - 9th International Conference, IScIDE 2019, Nanjing, China,
October 17-20, 2019, Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {11936},
pages = {126--138},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-36204-1\_10},
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Zi Liu and
Dong{-}Jun Yu and
Yang Zhang},
title = {LS-align: an atom-level, flexible ligand structural alignment algorithm
for high-throughput virtual screening},
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volume = {34},
number = {13},
pages = {2209--2218},
year = {2018},
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author = {Jun Hu and
Yang Li and
Yang Zhang and
Dong{-}Jun Yu},
title = {ATPbind: Accurate Protein-ATP Binding Site Prediction by Combining
Sequence-Profiling and Structure-Based Comparisons},
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number = {2},
pages = {501--510},
year = {2018},
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timestamp = {Tue, 29 Mar 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcisd/HuLZY18.bib},
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author = {He Yan and
Qiaolin Ye and
Tian'an Zhang and
Dong{-}Jun Yu and
Yiqing Xu},
title = {L1-Norm {GEPSVM} Classifier Based on an Effective Iterative Algorithm
for Classification},
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author = {He Yan and
Qiaolin Ye and
Tian'an Zhang and
Dong{-}Jun Yu and
Xia Yuan and
Yiqing Xu and
Liyong Fu},
title = {Least squares twin bounded support vector machines based on L1-norm
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author = {Chun{-}Qiu Xia and
Ke Han and
Yong Qi and
Yang Zhang and
Dong{-}Jun Yu},
title = {A Self-Training Subspace Clustering Algorithm under Low-Rank Representation
for Cancer Classification on Gene Expression Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {15},
number = {4},
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author = {Suping Xu and
Xibei Yang and
Hualong Yu and
Dongjun Yu},
title = {{\unicode{19968}}{\unicode{31181}}{\unicode{22522}}{\unicode{20110}}{\unicode{37051}}{\unicode{22495}}{\unicode{21327}}{\unicode{21516}}{\unicode{34920}}{\unicode{36798}}{\unicode{30340}}{\unicode{20998}}{\unicode{31867}}{\unicode{26041}}{\unicode{27861}}
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pages = {234--238},
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biburl = {https://dblp.org/rec/journals/jsjkx/XuYYY18.bib},
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author = {Jun Hu and
Yang Li and
Ming Zhang and
Xibei Yang and
Hong{-}Bin Shen and
Dong{-}Jun Yu},
title = {Predicting Protein-DNA Binding Residues by Weightedly Combining Sequence-Based
Features and Boosting Multiple SVMs},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {14},
number = {6},
pages = {1389--1398},
year = {2017},
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timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
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@inproceedings{DBLP:conf/acpr/YanYZY17,
author = {He Yan and
Qiaolin Ye and
Tian'an Zhang and
Dong{-}Jun Yu},
title = {Efficient and Robust {TWSVM} Classifier Based on L1-Norm Distance
Metric for Pattern Classification},
booktitle = {4th {IAPR} Asian Conference on Pattern Recognition, {ACPR} 2017, Nanjing,
China, November 26-29, 2017},
pages = {436--441},
publisher = {{IEEE} Computer Society},
year = {2017},
url = {https://doi.org/10.1109/ACPR.2017.23},
doi = {10.1109/ACPR.2017.23},
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biburl = {https://dblp.org/rec/conf/acpr/YanYZY17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/acpr/HuLY17,
author = {Jun Hu and
Zi Liu and
Dong{-}Jun Yu},
title = {Enhancing Protein-ATP and Protein-ADP Binding Sites Prediction Using
Supervised Instance-Transfer Learning},
booktitle = {4th {IAPR} Asian Conference on Pattern Recognition, {ACPR} 2017, Nanjing,
China, November 26-29, 2017},
pages = {759--763},
publisher = {{IEEE} Computer Society},
year = {2017},
url = {https://doi.org/10.1109/ACPR.2017.9},
doi = {10.1109/ACPR.2017.9},
timestamp = {Wed, 19 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/acpr/HuLY17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/candc/HuLYSY16,
author = {Jun Hu and
Yang Li and
Jing{-}Yu Yang and
Hong{-}Bin Shen and
Dong{-}Jun Yu},
title = {GPCR-drug interactions prediction using random forest with drug-association-matrix-based
post-processing procedure},
journal = {Comput. Biol. Chem.},
volume = {60},
pages = {59--71},
year = {2016},
url = {https://doi.org/10.1016/j.compbiolchem.2015.11.007},
doi = {10.1016/J.COMPBIOLCHEM.2015.11.007},
timestamp = {Tue, 29 Mar 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/candc/HuLYSY16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijon/HuLYYSY16,
author = {Jun Hu and
Yang Li and
Wuxia Yan and
Jing{-}Yu Yang and
Hong{-}Bin Shen and
Dong{-}Jun Yu},
title = {KNN-based dynamic query-driven sample rescaling strategy for class
imbalance learning},
journal = {Neurocomputing},
volume = {191},
pages = {363--373},
year = {2016},
url = {https://doi.org/10.1016/j.neucom.2016.01.043},
doi = {10.1016/J.NEUCOM.2016.01.043},
timestamp = {Tue, 29 Mar 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijon/HuLYYSY16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijon/WeiHYSY16,
author = {Zhisen Wei and
Ke Han and
Jing{-}Yu Yang and
Hong{-}Bin Shen and
Dong{-}Jun Yu},
title = {Protein-protein interaction sites prediction by ensembling {SVM} and
sample-weighted random forests},
journal = {Neurocomputing},
volume = {193},
pages = {201--212},
year = {2016},
url = {https://doi.org/10.1016/j.neucom.2016.02.022},
doi = {10.1016/J.NEUCOM.2016.02.022},
timestamp = {Tue, 01 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijon/WeiHYSY16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isci/JuYYLYY16,
author = {Hengrong Ju and
Xibei Yang and
Hualong Yu and
Tongjun Li and
Dong{-}Jun Yu and
Jingyu Yang},
title = {Cost-sensitive rough set approach},
journal = {Inf. Sci.},
volume = {355-356},
pages = {282--298},
year = {2016},
url = {https://doi.org/10.1016/j.ins.2016.01.103},
doi = {10.1016/J.INS.2016.01.103},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isci/JuYYLYY16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/kbs/XuYYYYT16,
author = {Suping Xu and
Xibei Yang and
Hualong Yu and
Dong{-}Jun Yu and
Jingyu Yang and
Eric C. C. Tsang},
title = {Multi-label learning with label-specific feature reduction},
journal = {Knowl. Based Syst.},
volume = {104},
pages = {52--61},
year = {2016},
url = {https://doi.org/10.1016/j.knosys.2016.04.012},
doi = {10.1016/J.KNOSYS.2016.04.012},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/kbs/XuYYYYT16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isci/YangQYYY15,
author = {Xibei Yang and
Yong Qi and
Dong{-}Jun Yu and
Hualong Yu and
Jingyu Yang},
title = {{\(\alpha\)}-Dominance relation and rough sets in interval-valued
information systems},
journal = {Inf. Sci.},
volume = {294},
pages = {334--347},
year = {2015},
url = {https://doi.org/10.1016/j.ins.2014.10.003},
doi = {10.1016/J.INS.2014.10.003},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isci/YangQYYY15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YuLHYYS15,
author = {Dong{-}Jun Yu and
Yang Li and
Jun Hu and
Xibei Yang and
Jing{-}Yu Yang and
Hong{-}Bin Shen},
title = {Disulfide Connectivity Prediction Based on Modelled Protein 3D Structural
Information and Random Forest Regression},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {12},
number = {3},
pages = {611--621},
year = {2015},
url = {https://doi.org/10.1109/TCBB.2014.2359451},
doi = {10.1109/TCBB.2014.2359451},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YuLHYYS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iscide/WeiYY15,
author = {Zhisen Wei and
Jing{-}Yu Yang and
Dong{-}Jun Yu},
editor = {Xiaofei He and
Xinbo Gao and
Yanning Zhang and
Zhi{-}Hua Zhou and
Zhiyong Liu and
Baochuan Fu and
Fuyuan Hu and
Zhancheng Zhang},
title = {Predicting Protein-Protein Interactions with Weighted {PSSM} Histogram
and Random Forests},
booktitle = {Intelligence Science and Big Data Engineering. Big Data and Machine
Learning Techniques - 5th International Conference, IScIDE 2015, Suzhou,
China, June 14-16, 2015, Revised Selected Papers, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {9243},
pages = {326--335},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-23862-3\_32},
doi = {10.1007/978-3-319-23862-3\_32},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/iscide/WeiYY15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YuHYYYS14,
author = {Dong{-}Jun Yu and
Jun Hu and
Hui Yan and
Xibei Yang and
Jing{-}Yu Yang and
Hong{-}Bin Shen},
title = {Enhancing protein-vitamin binding residues prediction by multiple
heterogeneous subspace SVMs ensemble},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {297},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-297},
doi = {10.1186/1471-2105-15-297},
timestamp = {Wed, 19 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YuHYYYS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijon/YuHTSYY13,
author = {Dong{-}Jun Yu and
Jun Hu and
Zhenmin Tang and
Hong{-}Bin Shen and
Jian Yang and
Jing{-}Yu Yang},
title = {Improving protein-ATP binding residues prediction by boosting SVMs
with random under-sampling},
journal = {Neurocomputing},
volume = {104},
pages = {180--190},
year = {2013},
url = {https://doi.org/10.1016/j.neucom.2012.10.012},
doi = {10.1016/J.NEUCOM.2012.10.012},
timestamp = {Wed, 19 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ijon/YuHTSYY13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcc/YuHHSQTY13,
author = {Dong{-}Jun Yu and
Jun Hu and
Yan Huang and
Hong{-}Bin Shen and
Yong Qi and
Zhenmin Tang and
Jing{-}Yu Yang},
title = {TargetATPsite: {A} template-free method for ATP-binding sites prediction
with residue evolution image sparse representation and classifier
ensemble},
journal = {J. Comput. Chem.},
volume = {34},
number = {11},
pages = {974--985},
year = {2013},
url = {https://doi.org/10.1002/jcc.23219},
doi = {10.1002/JCC.23219},
timestamp = {Wed, 19 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcc/YuHHSQTY13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/YuHYSTY13,
author = {Dong{-}Jun Yu and
Jun Hu and
Jing Yang and
Hong{-}Bin Shen and
Jinhui Tang and
Jing{-}Yu Yang},
title = {Designing Template-Free Predictor for Targeting Protein-Ligand Binding
Sites with Classifier Ensemble and Spatial Clustering},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {10},
number = {4},
pages = {994--1008},
year = {2013},
url = {https://doi.org/10.1109/TCBB.2013.104},
doi = {10.1109/TCBB.2013.104},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/YuHYSTY13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhangYLFHS12,
author = {Ya{-}Nan Zhang and
Dong{-}Jun Yu and
Shu{-}Sen Li and
Yong{-}Xian Fan and
Yan Huang and
Hong{-}Bin Shen},
title = {Predicting protein-ATP binding sites from primary sequence through
fusing bi-profile sampling of multi-view features},
journal = {{BMC} Bioinform.},
volume = {13},
pages = {118},
year = {2012},
url = {https://doi.org/10.1186/1471-2105-13-118},
doi = {10.1186/1471-2105-13-118},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhangYLFHS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iscide/YuHSQT12,
author = {Dongjun Yu and
Jun Hu and
Xiaoning Song and
Yong Qi and
Zhenmin Tang},
editor = {Jian Yang and
Fang Fang and
Changyin Sun},
title = {Supervised Kernel Self-Organizing Map},
booktitle = {Intelligent Science and Intelligent Data Engineering - Third Sino-foreign-interchange
Workshop, IScIDE 2012, Nanjing, China, October 15-17, 2012. Revised
Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {7751},
pages = {246--253},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-36669-7\_31},
doi = {10.1007/978-3-642-36669-7\_31},
timestamp = {Wed, 19 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iscide/YuHSQT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cma/YangLYLY09,
author = {Xibei Yang and
Tsau Young Lin and
Jingyu Yang and
Yan Li and
Dongjun Yu},
title = {Combination of interval-valued fuzzy set and soft set},
journal = {Comput. Math. Appl.},
volume = {58},
number = {3},
pages = {521--527},
year = {2009},
url = {https://doi.org/10.1016/j.camwa.2009.04.019},
doi = {10.1016/J.CAMWA.2009.04.019},
timestamp = {Thu, 11 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/cma/YangLYLY09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dke/YangYYW09,
author = {Xibei Yang and
Dongjun Yu and
Jingyu Yang and
Lihua Wei},
title = {Dominance-based rough set approach to incomplete interval-valued information
system},
journal = {Data Knowl. Eng.},
volume = {68},
number = {11},
pages = {1331--1347},
year = {2009},
url = {https://doi.org/10.1016/j.datak.2009.07.007},
doi = {10.1016/J.DATAK.2009.07.007},
timestamp = {Tue, 01 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/dke/YangYYW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijufks/YangYYS09,
author = {Xibei Yang and
Dongjun Yu and
Jingyu Yang and
Xiaoning Song},
title = {Difference Relation-Based Rough Set and Negative Rules in Incomplete
Information System},
journal = {Int. J. Uncertain. Fuzziness Knowl. Based Syst.},
volume = {17},
number = {5},
pages = {649--665},
year = {2009},
url = {https://doi.org/10.1142/S0218488509006194},
doi = {10.1142/S0218488509006194},
timestamp = {Tue, 01 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijufks/YangYYS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/fskd/YuLY09,
author = {Dongjun Yu and
Jianfeng Lu and
Jingyu Yang},
editor = {Yixin Chen and
Hepu Deng and
Degan Zhang and
Yingyuan Xiao},
title = {Geodesic Discriminant Analysis on Curved Riemannian Manifold},
booktitle = {Sixth International Conference on Fuzzy Systems and Knowledge Discovery,
{FSKD} 2009, Tianjin, China, 14-16 August 2009, 6 Volumes},
pages = {379--383},
publisher = {{IEEE} Computer Society},
year = {2009},
url = {https://doi.org/10.1109/FSKD.2009.113},
doi = {10.1109/FSKD.2009.113},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/fskd/YuLY09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iciap/YuHS09,
author = {Dongjun Yu and
Edwin R. Hancock and
William A. P. Smith},
editor = {Pasquale Foggia and
Carlo Sansone and
Mario Vento},
title = {A Riemannian Self-Organizing Map},
booktitle = {Image Analysis and Processing - {ICIAP} 2009, 15th International Conference
Vietri sul Mare, Italy, September 8-11, 2009, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5716},
pages = {229--238},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04146-4\_26},
doi = {10.1007/978-3-642-04146-4\_26},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/iciap/YuHS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ima-ms/YuHS09,
author = {Dongjun Yu and
Edwin R. Hancock and
William A. P. Smith},
editor = {Edwin R. Hancock and
Ralph R. Martin and
Malcolm A. Sabin},
title = {Learning a Self-organizing Map Model on a Riemannian Manifold},
booktitle = {Mathematics of Surfaces XIII, 13th {IMA} International Conference,
York, UK, September 7-9, 2009, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5654},
pages = {375--390},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-03596-8\_22},
doi = {10.1007/978-3-642-03596-8\_22},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ima-ms/YuHS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isci/YangYWY08,
author = {Xibei Yang and
Jingyu Yang and
Chen Wu and
Dongjun Yu},
title = {Dominance-based rough set approach and knowledge reductions in incomplete
ordered information system},
journal = {Inf. Sci.},
volume = {178},
number = {4},
pages = {1219--1234},
year = {2008},
url = {https://doi.org/10.1016/j.ins.2007.09.019},
doi = {10.1016/J.INS.2007.09.019},
timestamp = {Tue, 01 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isci/YangYWY08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icfie/YangYYW07,
author = {Xibei Yang and
Dongjun Yu and
Jingyu Yang and
Chen Wu},
editor = {Bing{-}yuan Cao},
title = {Generalization of Soft Set Theory: From Crisp to Fuzzy Case},
booktitle = {Fuzzy Information and Engineering, Proceedings of the Second International
Conference of Fuzzy Information and Engineering, {ICFIE} 2007, May
13-16, 2007, Guangzhou, China},
series = {Advances in Soft Computing},
volume = {40},
pages = {345--354},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-71441-5\_39},
doi = {10.1007/978-3-540-71441-5\_39},
timestamp = {Tue, 01 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icfie/YangYYW07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/grc/ZhengWYYWL06,
author = {Yu{-}Jie Zheng and
Xiaojun Wu and
Dongjun Yu and
Jingyu Yang and
Weidong Wang and
Yong{-}Zhi Li},
title = {Feature extraction by structured stepwise nonparametric maximum margin
criterion},
booktitle = {2006 {IEEE} International Conference on Granular Computing, GrC 2006,
Atlanta, Georgia, USA, May 10-12, 2006},
pages = {53--56},
publisher = {{IEEE}},
year = {2006},
url = {https://doi.org/10.1109/GRC.2006.1635757},
doi = {10.1109/GRC.2006.1635757},
timestamp = {Tue, 01 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/grc/ZhengWYYWL06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icic/YuWY06,
author = {Dongjun Yu and
Xiaojun Wu and
Jing{-}Yu Yang},
editor = {De{-}Shuang Huang and
Kang Li and
George W. Irwin},
title = {Quantitative Measurement for Fuzzy System to Input and Rule Perturbations},
booktitle = {Computational Intelligence, International Conference on Intelligent
Computing, {ICIC} 2006, Kunming, China, August 16-19, 2006. Proceedings,
Part {II}},
series = {Lecture Notes in Computer Science},
volume = {4114},
pages = {159--164},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11816171\_21},
doi = {10.1007/11816171\_21},
timestamp = {Tue, 01 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icic/YuWY06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icicic/YuQXY06,
author = {Dongjun Yu and
Yong Qi and
Yong{-}Hong Xu and
Jing{-}Yu Yang},
title = {Kernel-SOM Based Visualization of Financial Time Series Forecasting},
booktitle = {First International Conference on Innovative Computing, Information
and Control {(ICICIC} 2006), 30 August - 1 September 2006, Beijing,
China},
pages = {470--473},
publisher = {{IEEE} Computer Society},
year = {2006},
url = {https://doi.org/10.1109/ICICIC.2006.304},
doi = {10.1109/ICICIC.2006.304},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icicic/YuQXY06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icpr/ZhengYYWY06,
author = {Yu{-}Jie Zheng and
Jing{-}Yu Yang and
Jian Yang and
Xiaojun Wu and
Dongjun Yu},
title = {A Complete and Rapid Feature Extraction Method for Face Recognition},
booktitle = {18th International Conference on Pattern Recognition {(ICPR} 2006),
20-24 August 2006, Hong Kong, China},
pages = {469--472},
publisher = {{IEEE} Computer Society},
year = {2006},
url = {https://doi.org/10.1109/ICPR.2006.53},
doi = {10.1109/ICPR.2006.53},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icpr/ZhengYYWY06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/pr/XuYLY04,
author = {Yong Xu and
Jing{-}Yu Yang and
Jianfeng Lu and
Dongjun Yu},
title = {An efficient renovation on kernel Fisher discriminant analysis and
face recognition experiments},
journal = {Pattern Recognit.},
volume = {37},
number = {10},
pages = {2091--2094},
year = {2004},
url = {https://doi.org/10.1016/j.patcog.2004.02.016},
doi = {10.1016/J.PATCOG.2004.02.016},
timestamp = {Tue, 01 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/pr/XuYLY04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ida/WangYY03,
author = {Shitong Wang and
Dongjun Yu and
Jing{-}Yu Yang},
title = {Integrating rough set theory and fuzzy neural network to discover
fuzzy rules},
journal = {Intell. Data Anal.},
volume = {7},
number = {1},
pages = {59--73},
year = {2003},
url = {http://content.iospress.com/articles/intelligent-data-analysis/ida00117},
timestamp = {Tue, 06 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ida/WangYY03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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