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Daniel Baum

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affiliation: Konrad-Zuse-Zentrum für Informationstechnik Berlin (ZIB)

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2020 – today

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2024
[j20]
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  - journals/tvcg/KlenertLB24
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Nicolas Klenert, Verena Lepper, Daniel Baum:
A Local Iterative Approach for the Extraction of 2D Manifolds from Strongly Curved and Folded Thin-Layer Structures. IEEE Trans. Vis. Comput. Graph. 30(1): 1260-1270 (2024)
2023
[j19]
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Anna Sterzik, Nils Lichtenberg, Michael Krone, Daniel Baum, Douglas W. Cunningham, Kai Lawonn:
Enhancing molecular visualization: Perceptual evaluation of line variables with application to uncertainty visualization. Comput. Graph. 114: 401-413 (2023)
[j18]
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  - journals/ploscb/BoeltsHGUYBHOM23
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Jan Boelts, Philipp Harth, Richard Gao, Daniel Udvary, Felipe Yáñez, Daniel Baum, Hans-Christian Hege, Marcel Oberländer, Jakob H. Macke:
Simulation-based inference for efficient identification of generative models in computational connectomics. PLoS Comput. Biol. 19(9) (2023)
[i3]
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  - journals/corr/abs-2308-07070
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Nicolas Klenert, Verena Lepper, Daniel Baum:
A Local Iterative Approach for the Extraction of 2D Manifolds from Strongly Curved and Folded Thin-Layer Structures. CoRR abs/2308.07070 (2023)
2022
[j17]
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Noushin Hajarolasvadi, Vikram Sunkara, Sagar Khavnekar, Florian Beck, Robert Brandt, Daniel Baum:
Volumetric macromolecule identification in cryo-electron tomograms using capsule networks. BMC Bioinform. 23(1): 360 (2022)
[j16]
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  - journals/cgf/MikulaDBH22
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Natalia Mikula, Tom Dörffel, Daniel Baum, Hans-Christian Hege:
An Interactive Approach for Identifying Structure Definitions. Comput. Graph. Forum 41(3): 321-332 (2022)
[c16]
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  - conf/eccv/PaskinBDT22
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Martha Paskin, Daniel Baum, Mason N. Dean, Christoph von Tycowicz:
A Kendall Shape Space Approach to 3D Shape Estimation from 2D Landmarks. ECCV (2) 2022: 363-379
[c15]
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  - conf/geomedia/MayerBAT22
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Julius Mayer, Daniel Baum, Felix Ambellan, Christoph von Tycowicz:
A Soft-Correspondence Approach to Shape-based Disease Grading with Graph Convolutional Networks. GeoMedIA 2022: 85-95
[c14]
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Benedikt Schmitt, Jürgen Titschack, Daniel Baum:
Polyp-Cavity Segmentation of Cold-Water Corals guided by Ambient Occlusion and Ambient Curvature. VCBM 2022: 71-80
[c13]
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Philipp Harth, Sumit Vohra, Daniel Udvary, Marcel Oberländer, Hans-Christian Hege, Daniel Baum:
A Stratification Matrix Viewer for Analysis of Neural Network Data. VCBM 2022: 117-121
[c12]
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  - conf/vissym/FogalliLB22
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Giovani Bressan Fogalli, Sérgio Roberto Peres Line, Daniel Baum:
Automatic Segmentation of Tooth Images: Optimization of Multi-parameter Image Processing Workflow. EuroVis (Posters) 2022: 11-13
[i2]
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  - journals/corr/abs-2207-12687
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Martha Paskin, Daniel Baum, Mason N. Dean, Christoph von Tycowicz:
A Kendall Shape Space Approach to 3D Shape Estimation from 2D Landmarks. CoRR abs/2207.12687 (2022)
2021
[j15]
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  - journals/cgf/HerterHHLB21
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Felix Herter, Hans-Christian Hege, Markus Hadwiger, Verena Lepper, Daniel Baum:
Thin-Volume Visualization on Curved Domains. Comput. Graph. Forum 40(3): 147-157 (2021)
[j14]
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  - journals/daach/BaumHLLR21
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Daniel Baum, Felix Herter, John Møller Larsen, Achim Lichtenberger, Rubina Raja:
Revisiting the Jerash Silver Scroll: A new visual data analysis approach. Digit. Appl. Archaeol. Cult. Heritage 21: 00186 (2021)
[i1]
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  - journals/corr/abs-2112-09066
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Natalia Mikula, Tom Dörffel, Daniel Baum, Hans-Christian Hege:
An Interactive Approach for Identifying Structure Definitions. CoRR abs/2112.09066 (2021)

2010 – 2019

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2019
[j13]
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  - journals/tvcg/LindowBLH19
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Norbert Lindow, Daniel Baum, Morgan Leborgne, Hans-Christian Hege:
Interactive Visualization of RNA and DNA Structures. IEEE Trans. Vis. Comput. Graph. 25(1): 967-976 (2019)
2018
[j12]
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  - journals/gandc/TitschackBMBFKE18
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Jürgen Titschack, Daniel Baum, K. Matsuyama, K. Boos, C. Färber, Wolf-Achim Kahl, Karsten Ehrig, Dietmar Meinel, C. Soriano, Stuart R. Stock:
Ambient occlusion - A powerful algorithm to segment shell and skeletal intrapores in computed tomography data. Comput. Geosci. 115: 75-87 (2018)
[c11]
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  - conf/cogsci/LesterBB18
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Nicholas Lester, Daniel Baum, Tirza Biron:
Phonetic duration of nouns depends on de-lexicalized syntactic distributions: Evidence from naturally occurring conversation. CogSci 2018
[c10]
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  - conf/molva-ws/LindowBH18
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Norbert Lindow, Daniel Baum, Hans-Christian Hege:
Atomic Accessibility Radii for Molecular Dynamics Analysis. MolVa@EuroVis 2018: 9-17
[c9]
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  - conf/vcbm/KnotelBSB18
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David Knötel, Carola Becker, Gerhard Scholtz, Daniel Baum:
Global and Local Mesh Morphing for Complex Biological Objects from µCT Data. VCBM@MICCAI 2018: 179-183
2017
[j11]
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  - journals/cgf/AboulhassanSBWH17
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Amal Aboulhassan, Ronell Sicat, Daniel Baum, Olga Wodo, Markus Hadwiger:
Comparative Visual Analysis of Structure-Performance Relations in Complex Bulk-Heterojunction Morphologies. Comput. Graph. Forum 36(3): 329-339 (2017)
[j10]
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  - journals/cgf/KozlikovaKFLBBV17
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Barbora Kozlíková, Michael Krone, Martin Falk, Norbert Lindow, Marc Baaden, Daniel Baum, Ivan Viola, Július Parulek, Hans-Christian Hege:
Visualization of Biomolecular Structures: State of the Art Revisited. Comput. Graph. Forum 36(8): 178-204 (2017)
2016
[j9]
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Michael Krone, Barbora Kozlíková, Norbert Lindow, Marc Baaden, Daniel Baum, Július Parulek, Hans-Christian Hege, Ivan Viola:
Visual Analysis of Biomolecular Cavities: State of the Art. Comput. Graph. Forum 35(3): 527-551 (2016)
[c8]
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  - conf/vissym/BaumT16
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Daniel Baum, Jürgen Titschack:
Cavity and Pore Segmentation in 3D Images with Ambient Occlusion. EuroVis (Short Papers) 2016: 113-117
2015
[j8]
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Amal Aboulhassan, Daniel Baum, Olga Wodo, Baskar Ganapathysubramanian, Aram Amassian, Markus Hadwiger:
A Novel Framework for Visual Detection and Exploration of Performance Bottlenecks in Organic Photovoltaic Solar Cell Materials. Comput. Graph. Forum 34(3): 401-410 (2015)
[c7]
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Barbora Kozlíková, Michael Krone, Norbert Lindow, Martin Falk, Marc Baaden, Daniel Baum, Ivan Viola, Július Parulek, Hans-Christian Hege:
Visualization of Biomolecular Structures: State of the Art. EuroVis (STARs) 2015: 61-81
2014
[j7]
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Norbert Lindow, Daniel Baum, Hans-Christian Hege:
Ligand Excluded Surface: A New Type of Molecular Surface. IEEE Trans. Vis. Comput. Graph. 20(12): 2486-2495 (2014)
[c6]
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Daniel Baum, Matthias Rothmund:
HORSCH Telemetriesystem. GIL Jahrestagung 2014: 21-24
[p1]
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  - books/daglib/p/HombergBWPH14
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Ulrike Homberg, Daniel Baum, Alexander Wiebel, Steffen Prohaska, Hans-Christian Hege:
Definition, Extraction, and Validation of Pore Structures in Porous Materials. Topological Methods in Data Analysis and Visualization 2014: 235-248
2013
[j6]
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Norbert Lindow, Daniel Baum, Ana-Nicoleta Bondar, Hans-Christian Hege:
Exploring cavity dynamics in biomolecular systems. BMC Bioinform. 14(S-19): S5 (2013)
[j5]
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  - journals/tvcg/KratzBH13
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Andrea Kratz, Daniel Baum, Ingrid Hotz:
Anisotropic Sampling of Planar and Two-Manifold Domains for Texture Generation and Glyph Distribution. IEEE Trans. Vis. Comput. Graph. 19(11): 1782-1794 (2013)
2012
[j4]
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Norbert Lindow, Daniel Baum, Hans-Christian Hege:
Perceptually Linear Parameter Variations. Comput. Graph. Forum 31(2pt3): 535-544 (2012)
[j3]
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Norbert Lindow, Daniel Baum, Hans-Christian Hege:
Interactive Rendering of Materials and Biological Structures on Atomic and Nanoscopic Scale. Comput. Graph. Forum 31(3pt4): 1325-1334 (2012)
[c5]
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  - conf/biovis/LindowBBH12
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Norbert Lindow, Daniel Baum, Ana-Nicoleta Bondar, Hans-Christian Hege:
Dynamic channels in biomolecular systems: Path analysis and visualization. BioVis 2012: 99-106
[c4]
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  - conf/vast/KlindtPBH12
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Marco Klindt, Steffen Prohaska, Daniel Baum, Hans-Christian Hege:
Conveying Archaeological Contexts to Museum Visitors: Case Study Pergamon Exhibition. VAST (Short and Project Papers) 2012
2011
[j2]
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Norbert Lindow, Daniel Baum, Hans-Christian Hege:
Voronoi-Based Extraction and Visualization of Molecular Paths. IEEE Trans. Vis. Comput. Graph. 17(12): 2025-2034 (2011)
2010
[j1]
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Norbert Lindow, Daniel Baum, Steffen Prohaska, Hans-Christian Hege:
Accelerated Visualization of Dynamic Molecular Surfaces. Comput. Graph. Forum 29(3): 943-952 (2010)

2000 – 2009

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2007
[b1]
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  - phd/basesearch/Baum07
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Daniel Baum:
A Point-Based Algorithm for Multiple 3D Surface Alignment of Drug-Sized Molecules (Ein punktbasierter Algorithmus zur Mehrfachüberlagerung dreidimensionaler Oberflächen von Wirkstoffmolekülen). FU Berlin, Germany, 2007
2006
[c3]
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  - conf/complife/BaumH06
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Daniel Baum, Hans-Christian Hege:
A Point-Matching Based Algorithm for 3D Surface Alignment of Drug-Sized Molecules. CompLife 2006: 183-193
2005
[c2]
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Daniel Baum:
Multiple Semi-flexible 3D Superposition of Drug-Sized Molecules. CompLife 2005: 198-207
2002
[c1]
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  - conf/visualization/Schmidt-EhrenbergBH02
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Johannes Schmidt-Ehrenberg, Daniel Baum, Hans-Christian Hege:
Visualizing Dynamic Molecular Conformations. IEEE Visualization 2002: 235-242

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