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ORCIDKary A. C. S. Ocaña
◁ ▷ joint publications with coauthor community group 1
- > Home > Persons > Kary A. C. S. Ocaña
Publications
- 2023
[c38]Alexandre H. L. Porto, Micaella Coelho, Kary A. C. S. Ocaña, Carla Osthoff, Francieli Boito, Douglas de O. Cardoso
:
An Exploratory Study of Deep Learning for Predicting Computational Tasks Behavior in HPC Systems. SBAC-PADW 2023: 9-15- 2022
- [j16]Lucas Cruz, Micaella Coelho, Marcelo Galheigo, André Ramos Carneiro, Diego Carvalho, Luiz M. R. Gadelha Jr., Francieli Zanon Boito, Philippe O. A. Navaux, Carla Osthoff, Kary A. C. S. Ocaña:
Parallel Performance and I/O Profiling of HPC RNA-Seq Applications. Computación y Sistemas 26(4) (2022) - [c37]Kary A. C. S. Ocaña, Lucas Cruz, Micaella Coelho, Rafael Terra, Marcelo Galheigo, Andre Ramos Carneiro, Diego Carvalho, Luiz M. R. Gadelha Jr., Francieli Zanon Boito, Philippe O. A. Navaux, Carla Osthoff:
ParslRNA-Seq: An Efficient and Scalable RNAseq Analysis Workflow for Studies of Differentiated Gene Expression. CARLA 2022: 174-189 - 2020
- [j15]Thaylon Guedes, Leonardo Araújo de Jesus, Kary A. C. S. Ocaña, Lúcia M. A. Drummond, Daniel de Oliveira:
Provenance-based fault tolerance technique recommendation for cloud-based scientific workflows: a practical approach. Clust. Comput. 23(1): 123-148 (2020) - [j14]Kary A. C. S. Ocaña, Marcelo Galheigo, Carla Osthoff, Luiz M. R. Gadelha Jr., Fábio Porto, Antônio Tadeu A. Gomes, Daniel de Oliveira, Ana Tereza Ribeiro de Vasconcelos:
BioinfoPortal: A scientific gateway for integrating bioinformatics applications on the Brazilian national high-performance computing network. Future Gener. Comput. Syst. 107: 192-214 (2020) - [j13]Thaylon Guedes, Lucas Bertelli Martins, Maria Luiza Furtuozo Falci, Vítor Silva, Kary A. C. S. Ocaña, Marta Mattoso, Marcos V. N. Bedo, Daniel de Oliveira:
Capturing and Analyzing Provenance from Spark-based Scientific Workflows with SAMbA-RaP. Future Gener. Comput. Syst. 112: 658-669 (2020) - [c36]Lucas Tito, Cristina Motinha, Filipe Santiago, Kary A. C. S. Ocaña, Marcos V. N. Bedo, Daniel de Oliveira:
Xi-DL: um Sistema de Gerência de Data Lake para Monitoramento de Dados da Saúde. SBBD 2020: 151-156 - 2019
- [j12]Marcos A. Guerine, Murilo B. Stockinger, Isabel Rosseti, Luidi Gelabert Simonetti, Kary A. C. S. Ocaña, Alexandre Plastino, Daniel de Oliveira:
A provenance-based heuristic for preserving results confidentiality in cloud-based scientific workflows. Future Gener. Comput. Syst. 97: 697-713 (2019) - [c35]Kary A. C. S. Ocaña, Carla Osthoff, Micaella Coelho, Marcelo Galheigo, Isabela Canuto, Douglas E. M. de Oliveira, Daniel de Oliveira:
Performance Evaluation of Parallel Inference of Large Phylogenetic Trees in Santos Dumont Supercomputer: A Practical Approach. CARLA 2019: 448-463 - [c34]Kary Ann del Carmen Ocaña Gautherot, Marcelo Galheigo, Carla Osthoff, Luiz M. R. Gadelha Jr., Antônio Tadeu A. Gomes, Daniel de Oliveira, Fábio Porto, Ana Tereza Ribeiro de Vasconcelos:
Towards a Science Gateway for Bioinformatics: Experiences in the Brazilian System of High Performance Computing. CCGRID 2019: 638-647 - [c33]Kary A. C. S. Ocaña, Thaylon Guedes, Daniel de Oliveira:
ArrOW: Experiencing a Parallel Cloud-Based De Novo Assembler Workflow. IPDPS Workshops 2019: 185-190 - [c32]Yan Mendes, Victor Ströele, Daniel de Oliveira, Kary A. C. S. Ocaña:
Análise Integrada de Grafos de Proveniência Heterogêneos por meio de uma Abordagem PolyStore. SBBD 2019: 73-84 - [c31]Daniel de Oliveira, Eduardo Rodrigues Duarte Neto, Serafim Costa, Paulo Roberto Pessoa Amora, Asley Caldas, Marco Horta, Ana Maria de Fillippis, Kary A. C. S. Ocaña, Vânia Maria P. Vidal, Javam C. Machado:
Um Estudo Comparativo de Mecanismos de Privacidade Diferencial sobre um Dataset de Ocorrências do ZIKV no Brasil. SBBD 2019: 253-258 - 2018
- [c30]Patrick Valduriez, Marta Mattoso, Reza Akbarinia, Heraldo Borges, José J. Camata, Alvaro L. G. A. Coutinho, Daniel Gaspar, Noel Moreno Lemus, Ji Liu, Hermano Lustosa, Florent Masseglia, Fabrício Nogueira da Silva, Vítor Silva, Renan Souza, Kary A. C. S. Ocaña, Eduardo S. Ogasawara, Daniel de Oliveira, Esther Pacitti, Fábio Porto, Dennis E. Shasha:
Scientific Data Analysis Using Data-Intensive Scalable Computing: The SciDISC Project. LADaS@VLDB 2018: 1-8 - [i1]Maria Luiza Mondelli, Thiago Magalhães, Guilherme Loss, Michael Wilde, Ian T. Foster, Marta Mattoso, Daniel S. Katz, Helio J. C. Barbosa, Ana Tereza Ribeiro de Vasconcelos, Kary A. C. S. Ocaña, Luiz M. R. Gadelha Jr.:
BioWorkbench: A High-Performance Framework for Managing and Analyzing Bioinformatics Experiments. CoRR abs/1801.03915 (2018) - 2017
- [j11]Anderson Marinho, Daniel de Oliveira, Eduardo S. Ogasawara, Vítor Silva, Kary A. C. S. Ocaña, Leonardo Murta, Vanessa Braganholo, Marta Mattoso:
Deriving scientific workflows from algebraic experiment lines: A practical approach. Future Gener. Comput. Syst. 68: 111-127 (2017) - [j10]Wellington Moreira de Oliveira, Kary A. C. S. Ocaña, Daniel de Oliveira, Vanessa Braganholo:
Querying Provenance along with External Domain Data Using Prolog. J. Inf. Data Manag. 8(1): 3-18 (2017) - [j9]Vitor C. Neves, Daniel de Oliveira, Kary A. C. S. Ocaña, Vanessa Braganholo, Leonardo Murta:
Managing Provenance of Implicit Data Flows in Scientific Experiments. ACM Trans. Internet Techn. 17(4): 36:1-36:22 (2017) - [c29]Augusto Romeiro, Kary A. C. S. Ocaña, Marcos Kalinowski, Daniel de Oliveira:
SciAgile: Aplicação de Metodologias Ágeis em Experimentos Científicos Baseados em Simulação. CIbSE 2017: 511-524 - [c28]Isabel Rosseti, Kary A. C. S. Ocaña, Daniel de Oliveira:
Towards preserving results confidentiality in cloud-based scientific workflows. WORKS@SC 2017: 6:1-6:9 - [p1]Rafaelli de C. Coutinho, Yuri Frota, Kary A. C. S. Ocaña, Daniel de Oliveira, Lúcia M. A. Drummond:
Mirror Mirror on the Wall, How Do I Dimension My Cloud After All? Cloud Computing, 2nd Ed. 2017: 27-58 - 2016
- [j8]Rafaelli de C. Coutinho, Yuri Frota, Kary A. C. S. Ocaña, Daniel de Oliveira, Lúcia M. A. Drummond:
A Dynamic Cloud Dimensioning Approach for Parallel Scientific Workflows: a Case Study in the Comparative Genomics Domain. J. Grid Comput. 14(3): 443-461 (2016) - [c27]Wellington Moreira de Oliveira, Paolo Missier, Kary A. C. S. Ocaña, Daniel de Oliveira, Vanessa Braganholo:
Analyzing Provenance Across Heterogeneous Provenance Graphs. IPAW 2016: 57-70 - [c26]Gustavo Tallarida, Kary A. C. S. Ocaña, Aline Paes, Vanessa Braganholo, Daniel de Oliveira:
Gerência de Incerteza em Bancos de Dados de Proveniência de Workflows de Bioinformática. SBBD 2016: 181-186 - [c25]Leonardo S. Ramos, Kary A. C. S. Ocaña, Daniel Oliveira:
Um Sistema de Informação para Gerência de Projetos Científicos baseados em Simulações Computacionais [An IS for Managing Scientific Projects]. SBSI 2016: 216-223 - 2015
- [j7]Marta Mattoso, Jonas Dias, Kary A. C. S. Ocaña, Eduardo S. Ogasawara, Flavio Costa, Felipe Horta, Vítor Silva, Daniel de Oliveira:
Dynamic steering of HPC scientific workflows: A survey. Future Gener. Comput. Syst. 46: 100-113 (2015) - [c24]Kary A. C. S. Ocaña, Vítor Silva, Daniel de Oliveira, Marta Mattoso:
Data Analytics in Bioinformatics: Data Science in Practice for Genomics Analysis Workflows. e-Science 2015: 322-331 - [c23]Rachel Castro, Renan Souza, Vítor Silva, Kary A. C. S. Ocaña, Daniel de Oliveira, Marta Mattoso:
Uma Abordagem para Publicação de Dados de Proveniência de Workflows Científicos na Web Semântica. SBBD (Short Papers) 2015: 111-116 - 2014
- [c22]Rafaelli de C. Coutinho, Lúcia M. A. Drummond, Yuri Frota, Daniel de Oliveira, Kary A. C. S. Ocaña:
Evaluating Grasp-based cloud dimensioning for comparative genomics: A practical approach. CLUSTER 2014: 371-379 - [c21]Kary A. C. S. Ocaña, Daniel de Oliveira, Vítor Silva, Silvia Benza, Marta Mattoso:
Exploiting the Parallel Execution of Homology Workflow Alternatives in HPC Compute Clouds. ICSOC Workshops 2014: 336-350 - [c20]Flavio Costa, Vítor Silva, Daniel de Oliveira, Kary A. C. S. Ocaña, Marta Mattoso:
Towards Supporting Provenance Gathering and Querying in Different Database Approaches. IPAW 2014: 254-257 - [c19]Kary A. C. S. Ocaña, Silvia Benza, Daniel de Oliveira, Jonas Dias, Marta Mattoso:
Exploring Large Scale Receptor-Ligand Pairs in Molecular Docking Workflows in HPC Clouds. IPDPS Workshops 2014: 536-545 - [c18]Wellington Moreira de Oliveira, Vitor C. Neves, Kary A. C. S. Ocaña, Leonardo Murta, Daniel de Oliveira, Vanessa Braganholo:
Captura e Consulta a Dados de Proveniência Retrospectiva Implícita Intra-Atividade. SBBD 2014: 37-46 - [c17]Daniel de Oliveira, Flavio Costa, Vítor Silva, Kary A. C. S. Ocaña, Marta Mattoso:
Debugging Scientific Workflows with Provenance: Achievements and Lessons Learned. SBBD 2014: 67-76 - 2013
- [j6]Daniel de Oliveira, Kary A. C. S. Ocaña, Eduardo S. Ogasawara, Jonas Dias, João Carlos de A. R. Gonçalves, Fernanda Araújo Baião, Marta Mattoso:
Performance evaluation of parallel strategies in public clouds: A study with phylogenomic workflows. Future Gener. Comput. Syst. 29(7): 1816-1825 (2013) - [j5]Kary A. C. S. Ocaña, Daniel de Oliveira, Jonas Dias, Eduardo S. Ogasawara, Marta Mattoso:
Designing a parallel cloud based comparative genomics workflow to improve phylogenetic analyses. Future Gener. Comput. Syst. 29(8): 2205-2219 (2013) - [j4]João Carlos de A. R. Gonçalves, Daniel de Oliveira, Kary A. C. S. Ocaña, Eduardo S. Ogasawara, Jonas Dias, Marta Mattoso:
Performance Analysis of Data Filtering in Scientific Workflows. J. Inf. Data Manag. 4(1): 17-26 (2013) - [c16]Flavio Costa, Vítor Silva, Daniel de Oliveira, Kary A. C. S. Ocaña, Eduardo S. Ogasawara, Jonas Dias, Marta Mattoso:
Capturing and querying workflow runtime provenance with PROV: a practical approach. EDBT/ICDT Workshops 2013: 282-289 - [c15]Felipe Horta, Vítor Silva, Flavio Costa, Daniel de Oliveira, Kary A. C. S. Ocaña, Eduardo S. Ogasawara, Jonas Dias, Marta Mattoso:
Provenance traces from Chiron parallel workflow engine. EDBT/ICDT Workshops 2013: 337-338 - [c14]Daniel de Oliveira, Vitor Viana, Eduardo S. Ogasawara, Kary A. C. S. Ocaña, Marta Mattoso:
Dimensioning the virtual cluster for parallel scientific workflows in clouds. ScienceCloud@HPDC 2013: 5-12 - [c13]Julliano Trindade Pintas, Daniel de Oliveira, Kary A. C. S. Ocaña, Eduardo S. Ogasawara, Marta Mattoso:
SciLightning: A Cloud Provenance-Based Event Notification for Parallel Workflows. ICSOC Workshops 2013: 352-365 - [c12]Marta Mattoso, Kary A. C. S. Ocaña, Felipe Horta, Jonas Dias, Eduardo S. Ogasawara, Vítor Silva, Daniel de Oliveira, Flavio Costa, Igor Araújo:
User-steering of HPC workflows: state-of-the-art and future directions. SWEET@SIGMOD 2013: 4:1-4:6 - [c11]Igor Dos Santos, Jonas Dias, Daniel de Oliveira, Eduardo S. Ogasawara, Kary A. C. S. Ocaña, Marta Mattoso:
Runtime Dynamic Structural Changes of Scientific Workflows in Clouds. UCC 2013: 417-422 - 2012
- [j3]Daniel de Oliveira, Eduardo S. Ogasawara, Kary A. C. S. Ocaña, Fernanda Araújo Baião, Marta Mattoso:
An adaptive parallel execution strategy for cloud-based scientific workflows. Concurr. Comput. Pract. Exp. 24(13): 1531-1550 (2012) - [j2]Daniel de Oliveira, Kary A. C. S. Ocaña, Fernanda Araújo Baião, Marta Mattoso:
A Provenance-based Adaptive Scheduling Heuristic for Parallel Scientific Workflows in Clouds. J. Grid Comput. 10(3): 521-552 (2012) - [c10]Kary A. C. S. Ocaña, Daniel de Oliveira, Jonas Dias, Eduardo S. Ogasawara, Marta Mattoso:
Discovering drug targets for neglected diseases using a pharmacophylogenomic cloud workflow. eScience 2012: 1-8 - [c9]João Carlos de A. R. Gonçalves, Daniel de Oliveira, Kary A. C. S. Ocaña, Eduardo S. Ogasawara, Marta Mattoso:
Using Domain-Specific Data to Enhance Scientific Workflow Steering Queries. IPAW 2012: 152-167 - [c8]Flavio Costa, Daniel de Oliveira, Kary A. C. S. Ocaña, Eduardo S. Ogasawara, Marta Mattoso:
Enabling Re-executions of Parallel Scientific Workflows Using Runtime Provenance Data. IPAW 2012: 229-232 - [c7]João Carlos de A. R. Gonçalves, Daniel de Oliveira, Kary A. C. S. Ocaña, Eduardo S. Ogasawara, Jonas Dias, Marta Mattoso:
Using Provenance Analyzers to Improve the Performance of Scientific Workflows in Cloud Environments. SBBD (Short Papers) 2012: 1-8 - [c6]Flavio Costa, Daniel de Oliveira, Kary A. C. S. Ocaña, Eduardo S. Ogasawara, Jonas Dias, Marta Mattoso:
Handling Failures in Parallel Scientific Workflows Using Clouds. SC Companion 2012: 129-139 - [c5]Felipe Horta, Jonas Dias, Kary A. C. S. Ocaña, Daniel de Oliveira, Eduardo S. Ogasawara, Marta Mattoso:
Abstract: Using Provenance to Visualize Data from Large-Scale Experiments. SC Companion 2012: 1418-1419 - [c4]Kary A. C. S. Ocaña, Daniel de Oliveira, Felipe Horta, Jonas Dias, Eduardo S. Ogasawara, Marta Mattoso:
Exploring Molecular Evolution Reconstruction Using a Parallel Cloud Based Scientific Workflow. BSB 2012: 179-191 - 2011
- [c3]Daniel de Oliveira, Kary A. C. S. Ocaña, Eduardo S. Ogasawara, Jonas Dias, Fernanda Araújo Baião, Marta Mattoso:
A Performance Evaluation of X-Ray Crystallography Scientific Workflow Using SciCumulus. IEEE CLOUD 2011: 708-715 - [c2]Kary A. C. S. Ocaña, Daniel de Oliveira, Jonas Dias, Eduardo S. Ogasawara, Marta Mattoso:
Optimizing Phylogenetic Analysis Using SciHmm Cloud-based Scientific Workflow. eScience 2011: 62-69 - [c1]Kary A. C. S. Ocaña, Daniel de Oliveira, Eduardo S. Ogasawara, Alberto M. R. Dávila, Alexandre A. B. Lima, Marta Mattoso:
SciPhy: A Cloud-Based Workflow for Phylogenetic Analysis of Drug Targets in Protozoan Genomes. BSB 2011: 66-70 - 2008
- [j1]Alberto M. R. Dávila, Pablo N. Mendes, Glauber Wagner, Diogo A. Tschoeke, Rafael R. C. Cuadrat, Felipe Liberman, Luciana Matos, Thiago S. Satake, Kary A. C. S. Ocaña, Omar Triana, Sérgio Manuel Serra da Cruz, Henrique C. L. Jucá, Juliano C. Cury, Fabrício Nogueira da Silva, Guilherme A. Geronimo, Margarita Ruiz, Eduardo Ruback, Floriano P. Silva Jr., Christian M. Probst, Edmundo C. Grisard, Marco A. Krieger, Samuel Goldenberg, Maria Cláudia Reis Cavalcanti, Milton O. Moraes, Maria Luiza Machado Campos, Marta Mattoso:
ProtozoaDB: dynamic visualization and exploration of protozoan genomes. Nucleic Acids Res. 36(Database-Issue): 547-552 (2008)
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