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ORCIDSonja J. Prohaska
Person information
- affiliation: University of Leipzig, Department of Computer Science, Germany
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Journal Articles
- 2016
[j16]Henrike Indrischek
, Nicolas Wieseke, Peter F. Stadler, Sonja J. Prohaska:
The paralog-to-contig assignment problem: high quality gene models from fragmented assemblies. Algorithms Mol. Biol. 11: 1 (2016)- [j15]David C. Krakauer, Lydia Müller, Sonja J. Prohaska, Peter F. Stadler:
Design specifications for cellular regulation. Theory Biosci. 135(4): 231-240 (2016) - 2015
- [j14]Christian Höner zu Siederdissen, Sonja J. Prohaska, Peter F. Stadler:
Algebraic Dynamic Programming over general data structures. BMC Bioinform. 16(S19): S2 (2015) - [j13]Manfred D. Laubichler, Peter F. Stadler, Sonja J. Prohaska, Katja Nowick:
The relativity of biological function. Theory Biosci. 134(3-4): 143-147 (2015) - 2014
- [j12]Bernhard Misof, Karen Meusemann, Björn Marcus von Reumont, Patrick Kück, Sonja J. Prohaska, Peter F. Stadler:
A priori assessment of data quality in molecular phylogenetics. Algorithms Mol. Biol. 9: 22 (2014) - 2011
- [j11]Marcus Lechner, Sven Findeiß, Lydia Steiner, Manja Marz, Peter F. Stadler, Sonja J. Prohaska:
Proteinortho: Detection of (Co-)Orthologs in Large-Scale Analysis. BMC Bioinform. 12: 124 (2011) - 2009
- [j10]Axel Mosig, Türker Bíyíkoglu, Sonja J. Prohaska, Peter F. Stadler:
Discovering cis-regulatory modules by optimizing barbecues. Discret. Appl. Math. 157(10): 2458-2468 (2009) - [j9]Peter F. Stadler, Sonja J. Prohaska, Christian V. Forst, David C. Krakauer:
Defining genes: a computational framework. Theory Biosci. 128(3): 165-170 (2009) - 2008
- [j8]Andreas W. M. Dress, Christoph Flamm, Guido Fritzsch, Stefan Grünewald, Matthias Kruspe, Sonja J. Prohaska, Peter F. Stadler:
Noisy: Identification of problematic columns in multiple sequence alignments. Algorithms Mol. Biol. 3 (2008) - [j7]Jörg Lehmann, Peter F. Stadler, Sonja J. Prohaska:
SynBlast: Assisting the analysis of conserved synteny information. BMC Bioinform. 9 (2008) - [j6]Sonja J. Prohaska, Peter F. Stadler:
"Genes". Theory Biosci. 127(3): 215-221 (2008) - 2006
- [j5]Burkhard Morgenstern, Sonja J. Prohaska, Dirk Pöhler, Peter F. Stadler:
Multiple sequence alignment with user-defined anchor points. Algorithms Mol. Biol. 1 (2006) - 2005
- [j4]Burkhard Morgenstern, Nadine Werner, Sonja J. Prohaska, Rasmus Steinkamp, Isabelle Schneider, Amarendran Ramaswami Subramanian, Peter F. Stadler, Jan Weyer-Menkhoff:
Multiple sequence alignment with user-defined constraints at GOBICS. Bioinform. 21(7): 1271-1273 (2005) - [j3]Athanasius F. Bompfünewerer, Christoph Flamm, Claudia Fried, Guido Fritzsch, Ivo L. Hofacker, Jörg Lehmann, Kristin Missal, Axel Mosig, Bettina Müller, Sonja J. Prohaska, Bärbel M. R. Stadler, Peter F. Stadler, Andrea Tanzer, Stefan Washietl, Christina Witwer:
Evolutionary patterns of non-coding RNAs. Theory Biosci. 123(4): 301-369 (2005) - 2004
- [j2]Claudia Fried, Wim Hordijk, Sonja J. Prohaska, Claus R. Stadler, Peter F. Stadler:
The Footprint Sorting Problem. J. Chem. Inf. Model. 44(2): 332-338 (2004) - [j1]Sonja J. Prohaska, Peter F. Stadler:
The duplication of the Hox gene clusters in teleost fishes. Theory Biosci. 123(1): 89-110 (2004)
Conference and Workshop Papers
- 2014
- [c8]Christian Höner zu Siederdissen, Sarah Berkemer, Fabian Amman, Axel Wintsche, Sebastian Will, Sonja J. Prohaska, Peter F. Stadler:
Comparative Detection of Processed Small RNAs in Archaea. IWBBIO 2014: 286-297 - [c7]Christian Höner zu Siederdissen, Sonja J. Prohaska, Peter F. Stadler:
Dynamic Programming for Set Data Types. BSB 2014: 57-64 - 2011
- [c6]Wolfgang Otto, Peter F. Stadler, Sonja J. Prohaska:
Phylogenetic Footprinting and Consistent Sets of Local Aligments. CPM 2011: 118-131 - 2010
- [c5]Arli A. Parikesit, Peter F. Stadler, Sonja J. Prohaska:
Quantitative Comparison of Genomic-Wide Protein Domain Distributions. GCB 2010: 93-102 - [c4]Arli A. Parikesit, Peter F. Stadler, Sonja J. Prohaska:
Detection of Protein Domains in Eukaryotic Genome Sequences. BSB 2010: 71-74 - 2009
- [c3]Andreas Heffel, Sonja J. Prohaska, Peter F. Stadler, Gerhard Kauer, Jens-Peer Kuska:
Automatic Classification of Embryonic Fruit Fly Gene Expression Patterns. Bildverarbeitung für die Medizin 2009: 415-419 - 2008
- [c2]Andreas Heffel, Peter F. Stadler, Sonja J. Prohaska, Gerhard Kauer, Jens-Peer Kuska:
Process flow for classification and clustering of fruit fly gene expression patterns. ICIP 2008: 721-724 - 2004
- [c1]Burkhard Morgenstern, Sonja J. Prohaska, Nadine Werner, Jan Weyer-Menkhoff, Isabelle Schneider, Amarendran Ramaswami Subramanian, Peter F. Stadler:
Multiple sequence alignment with user-defined constraints. German Conference on Bioinformatics 2004: 25-36
Informal and Other Publications
- 2014
- [i1]Dirk Zeckzer, Daniel Gerighausen, Lydia Steiner, Sonja J. Prohaska:
Analyzing Chromatin Using Tiled Binned Scatterplot Matrices. CoRR abs/1407.2084 (2014)
Coauthor Index
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