Raffaele Giancarlo
http://www.math.unipa.it/~raffaele/
https://orcid.org/0000-0002-6286-8871
Paolo Ciancarini
Raffaele Giancarlo
Gennaro Grimaudo
Digital Transformation in the Public Administrations: A Guided Tour for Computer Scientists.
22841-22865
2024
12
IEEE Access
https://doi.org/10.1109/ACCESS.2024.3363075
db/journals/access/access12.html#CiancariniGG24
Paolo Ciancarini
Raffaele Giancarlo
Gennaro Grimaudo
Scrum@PA: Tailoring an Agile Methodology to the Digital Transformation in the Public Sector.
110
2024
February
15
Inf.
2
https://doi.org/10.3390/info15020110
db/journals/information/information15.html#CiancariniGG24
Domenico Amato
Giosuè Lo Bosco
Raffaele Giancarlo
Correction to: Neural networks as building blocks for the design of efficient learned indexes.
1047
2024
January
36
Neural Comput. Appl.
2
https://doi.org/10.1007/s00521-023-09079-7
db/journals/nca/nca36.html#AmatoBG24
Domenico Amato
Raffaele Giancarlo
Giosuè Lo Bosco
Learned Sorted Table Search and Static Indexes in Small-Space Data Models.
56
2023
March
8
Data
3
https://doi.org/10.3390/data8030056
db/journals/data/data8.html#AmatoGB23
Raffaele Giancarlo
Giovanni Manzini
Antonio Restivo
Giovanna Rosone
Marinella Sciortino
A new class of string transformations for compressed text indexing.
105068
2023
October
294
Inf. Comput.
https://doi.org/10.1016/j.ic.2023.105068
db/journals/iandc/iandc294.html#GiancarloMRRS23
Domenico Amato
Giosuè Lo Bosco
Raffaele Giancarlo
Neural networks as building blocks for the design of efficient learned indexes.
21399-21414
2023
October
35
Neural Comput. Appl.
29
https://doi.org/10.1007/s00521-023-08841-1
db/journals/nca/nca35.html#AmatoBG23
Domenico Amato
Giosuè Lo Bosco
Raffaele Giancarlo
Standard versus uniform binary search and their variants in learned static indexing: The case of the searching on sorted data benchmarking software platform.
318-346
2023
53
Softw. Pract. Exp.
2
https://doi.org/10.1002/spe.3150
db/journals/spe/spe53.html#AmatoBG23
Dario Malchiodi
Davide Raimondi
Giacomo Fumagalli
Raffaele Giancarlo
Marco Frasca 0001
A Critical Analysis of Classifier Selection in Learned Bloom Filters: The Essentials.
47-61
2023
EANN
https://doi.org/10.1007/978-3-031-34204-2_5
conf/eann/2023
db/conf/eann/eann2023.html#MalchiodiRFG023
Paolo Ciancarini
Raffaele Giancarlo
Gennaro Grimaudo
Digital Transformation in the Public Administrations: a Guided Tour For Computer Scientists.
2023
abs/2305.05551
CoRR
https://doi.org/10.48550/arXiv.2305.05551
db/journals/corr/corr2305.html#abs-2305-05551
Domenico Amato
Giosuè Lo Bosco
Raffaele Giancarlo
From Specific to Generic Learned Sorted Set Dictionaries: A Theoretically Sound Paradigm Yelding Competitive Data Structural Boosters in Practice.
2023
abs/2309.00946
CoRR
https://doi.org/10.48550/arXiv.2309.00946
db/journals/corr/corr2309.html#abs-2309-00946
Mariella Bonomo
Raffaele Giancarlo
Daniele Greco
Simona E. Rombo
Topological ranks reveal functional knowledge encoded in biological networks: a comparative analysis.
2022
23
Briefings Bioinform.
3
https://doi.org/10.1093/bib/bbac101
db/journals/bib/bib23.html#BonomoGGR22
Giuseppe Cattaneo
Umberto Ferraro Petrillo
Raffaele Giancarlo
Francesco Palini
Chiara Romualdi
The power of word-frequency-based alignment-free functions: a comprehensive large-scale experimental analysis.
925-932
2022
38
Bioinform.
4
https://doi.org/10.1093/bioinformatics/btab747
db/journals/bioinformatics/bioinformatics38.html#CattaneoPGPR22
Umberto Ferraro Petrillo
Francesco Palini
Giuseppe Cattaneo
Raffaele Giancarlo
Correction to: FASTA/Q data compressors for MapReduce-Hadoop genomics: space and time savings made easy.
73
2022
23
BMC Bioinform.
1
https://doi.org/10.1186/s12859-022-04600-6
https://www.wikidata.org/entity/Q112707546
db/journals/bmcbi/bmcbi23.html#PetrilloPCG22
Domenico Amato
Giosuè Lo Bosco
Raffaele Giancarlo
On the Suitability of Neural Networks as Building Blocks for the Design of Efficient Learned Indexes.
115-127
2022
EANN
https://doi.org/10.1007/978-3-031-08223-8_10
conf/eann/2022
db/conf/eann/eann2022.html#AmatoBG22
Giacomo Fumagalli
Davide Raimondi
Raffaele Giancarlo
Dario Malchiodi
Marco Frasca 0001
On the Choice of General Purpose Classifiers in Learned Bloom Filters: An Initial Analysis Within Basic Filters.
675-682
2022
ICPRAM
https://doi.org/10.5220/0010889000003122
conf/icpram/2022
db/conf/icpram/icpram2022.html#FumagalliRGM022
Domenico Amato
Giosuè Lo Bosco
Raffaele Giancarlo
Standard Vs Uniform Binary Search and Their Variants in Learned Static Indexing: The Case of the Searching on Sorted Data Benchmarking Software Platform.
2022
abs/2201.01554
CoRR
https://arxiv.org/abs/2201.01554
db/journals/corr/corr2201.html#abs-2201-01554
Domenico Amato
Giosuè Lo Bosco
Raffaele Giancarlo
On the Suitability of Neural Networks as Building Blocks for The Design of Efficient Learned Indexes.
2022
abs/2203.14777
CoRR
https://doi.org/10.48550/arXiv.2203.14777
db/journals/corr/corr2203.html#abs-2203-14777
Raffaele Giancarlo
Giovanni Manzini
Antonio Restivo
Giovanna Rosone
Marinella Sciortino
A New Class of String Transformations for Compressed Text Indexing.
2022
abs/2205.05643
CoRR
https://doi.org/10.48550/arXiv.2205.05643
db/journals/corr/corr2205.html#abs-2205-05643
Dario Malchiodi
Davide Raimondi
Giacomo Fumagalli
Raffaele Giancarlo
Marco Frasca 0001
A Critical Analysis of Classifier Selection in Learned Bloom Filters.
2022
abs/2211.15565
CoRR
https://doi.org/10.48550/arXiv.2211.15565
db/journals/corr/corr2211.html#abs-2211-15565
Raffaele Giancarlo
Gennaro Grimaudo
Pareto Optimal Compression of Genomic Dictionaries, with or without Random Access in Main Memory.
2022
abs/2212.03067
CoRR
https://doi.org/10.48550/arXiv.2212.03067
db/journals/corr/corr2212.html#abs-2212-03067
Umberto Ferraro Petrillo
Francesco Palini
Giuseppe Cattaneo
Raffaele Giancarlo
Alignment-free Genomic Analysis via a Big Data Spark Platform.
1658-1665
2021
37
Bioinform.
12
https://doi.org/10.1093/bioinformatics/btab014
db/journals/bioinformatics/bioinformatics37.html#PetrilloPCG21
Umberto Ferraro Petrillo
Francesco Palini
Giuseppe Cattaneo
Raffaele Giancarlo
FASTA/Q data compressors for MapReduce-Hadoop genomics: space and time savings made easy.
144
2021
22
BMC Bioinform.
1
https://doi.org/10.1186/s12859-021-04063-1
https://www.wikidata.org/entity/Q112725268
db/journals/bmcbi/bmcbi22.html#PetrilloPCG21
Domenico Amato
Giosuè Lo Bosco
Raffaele Giancarlo
Learned Sorted Table Search and Static Indexes in Small Model Space.
462-477
2021
AI*IA
https://doi.org/10.1007/978-3-031-08421-8_32
conf/aiia/2021
db/conf/aiia/aiia2021.html#AmatoBG21
Giuseppe Cattaneo
Umberto Ferraro Petrillo
Raffaele Giancarlo
Francesco Palini
Chiara Romualdi
The Power of Alignment-Free Histogram-based Functions: a Comprehensive Genome Scale Experimental Analysis - Version 1.
2021
abs/2106.15531
CoRR
https://arxiv.org/abs/2106.15531
db/journals/corr/corr2106.html#abs-2106-15531
Ylenia Galluzzo
Raffaele Giancarlo
Mario Randazzo
Simona E. Rombo
Burrows Wheeler Transform on a Large Scale: Algorithms Implemented in Apache Spark.
2021
abs/2107.03341
CoRR
https://arxiv.org/abs/2107.03341
db/journals/corr/corr2107.html#abs-2107-03341
Domenico Amato
Raffaele Giancarlo
Giosuè Lo Bosco
Learned Sorted Table Search and Static Indexes in Small Space: Methodological and Practical Insights via an Experimental Study.
2021
abs/2107.09480
CoRR
https://arxiv.org/abs/2107.09480
db/journals/corr/corr2107.html#abs-2107-09480
Giacomo Fumagalli
Davide Raimondi
Raffaele Giancarlo
Dario Malchiodi
Marco Frasca 0001
On the Choice of General Purpose Classifiers in Learned Bloom Filters: An Initial Analysis Within Basic Filters.
2021
abs/2112.06563
CoRR
https://arxiv.org/abs/2112.06563
db/journals/corr/corr2112.html#abs-2112-06563
Raffaele Giancarlo
Giovanni Manzini
Antonio Restivo
Giovanna Rosone
Marinella Sciortino
The Alternating BWT: An algorithmic perspective.
230-243
2020
812
Theor. Comput. Sci.
https://doi.org/10.1016/j.tcs.2019.11.002
db/journals/tcs/tcs812.html#GiancarloMRRS20
Umberto Ferraro Petrillo
Francesco Palini
Giuseppe Cattaneo
Raffaele Giancarlo
An Extensible, Scalable Spark Platform for Alignment-free Genomic Analysis - Version 2.
2020
abs/2005.00942
CoRR
https://arxiv.org/abs/2005.00942
db/journals/corr/corr2005.html#abs-2005-00942
Domenico Amato
Giosuè Lo Bosco
Raffaele Giancarlo
Learning from Data to Speed-up Sorted Table Search Procedures: Methodology and Practical Guidelines.
2020
abs/2007.10237
CoRR
https://arxiv.org/abs/2007.10237
db/journals/corr/corr2007.html#abs-2007-10237
Umberto Ferraro Petrillo
Francesco Palini
Giuseppe Cattaneo
Raffaele Giancarlo
FASTA/Q Data Compressors for MapReduce-Hadoop Genomics: Space and Time Savings Made Easy - Version 1.
2020
abs/2007.13673
CoRR
https://arxiv.org/abs/2007.13673
db/journals/corr/corr2007.html#abs-2007-13673
Umberto Ferraro Petrillo
Mara Sorella
Giuseppe Cattaneo
Raffaele Giancarlo
Simona E. Rombo
Analyzing big datasets of genomic sequences: fast and scalable collection of k-mer statistics.
138:1-138:14
2019
20-S
BMC Bioinform.
4
https://doi.org/10.1186/s12859-019-2694-8
https://www.wikidata.org/entity/Q64101719
db/journals/bmcbi/bmcbi20S.html#PetrilloSCGR19
Raffaele Giancarlo
Simona E. Rombo
Filippo Utro
DNA combinatorial messages and Epigenomics: The case of chromatin organization and nucleosome occupancy in eukaryotic genomes.
117-130
2019
792
Theor. Comput. Sci.
https://doi.org/10.1016/j.tcs.2018.06.047
db/journals/tcs/tcs792.html#GiancarloRU19
Raffaele Giancarlo
Giovanni Manzini
Giovanna Rosone
Marinella Sciortino
A New Class of Searchable and Provably Highly Compressible String Transformations.
12:1-12:12
2019
CPM
https://doi.org/10.4230/LIPIcs.CPM.2019.12
conf/cpm/2019
db/conf/cpm/cpm2019.html#GiancarloMRS19
Giuseppe Cattaneo
Raffaele Giancarlo
Umberto Ferraro Petrillo
Gianluca Roscigno
MapReduce in Computational Biology Via Hadoop and Spark.
221-229
2019
Encyclopedia of Bioinformatics and Computational Biology (1)
https://doi.org/10.1016/b978-0-12-809633-8.20371-3
reference/bioinf/2019-1
db/reference/bioinf/ebcb2019-1.html#CattaneoGPR19
Raffaele Giancarlo
Filippo Utro
Computation Cluster Validation in the Big Data Era.
449-455
2019
Encyclopedia of Bioinformatics and Computational Biology (1)
https://doi.org/10.1016/b978-0-12-809633-8.20385-3
reference/bioinf/2019-1
db/reference/bioinf/ebcb2019-1.html#GiancarloU19
Raffaele Giancarlo
Daniele Greco
Francesco Landolina
Simona E. Rombo
Network Centralities and Node Ranking.
950-957
2019
Encyclopedia of Bioinformatics and Computational Biology (1)
https://doi.org/10.1016/b978-0-12-809633-8.20425-1
reference/bioinf/2019-1
db/reference/bioinf/ebcb2019-1.html#GiancarloGLR19
Raffaele Giancarlo
Giovanni Manzini
Giovanna Rosone
Marinella Sciortino
A New Class of Searchable and Provably Highly Compressible String Transformations.
2019
abs/1902.01280
CoRR
http://arxiv.org/abs/1902.01280
db/journals/corr/corr1902.html#abs-1902-01280
Raffaele Giancarlo
Giovanni Manzini
Antonio Restivo
Giovanna Rosone
Marinella Sciortino
The Alternating BWT: an algorithmic perspective.
2019
abs/1907.02308
CoRR
http://arxiv.org/abs/1907.02308
db/journals/corr/corr1907.html#abs-1907-02308
Umberto Ferraro Petrillo
Gianluca Roscigno
Giuseppe Cattaneo
Raffaele Giancarlo
Informational and linguistic analysis of large genomic sequence collections via efficient Hadoop cluster algorithms.
1826-1833
2018
34
Bioinform.
11
https://doi.org/10.1093/bioinformatics/bty018
https://www.wikidata.org/entity/Q47561961
db/journals/bioinformatics/bioinformatics34.html#PetrilloRCG18
Raffaele Giancarlo
Simona E. Rombo
Filippo Utro
In vitro versus in vivo compositional landscapes of histone sequence preferences in eucaryotic genomes.
3454-3460
2018
34
Bioinform.
20
https://doi.org/10.1093/bioinformatics/bty799
https://www.wikidata.org/entity/Q57461455
db/journals/bioinformatics/bioinformatics34.html#GiancarloRU18
Raffaele Giancarlo
Giovanni Manzini
Antonio Restivo
Giovanna Rosone
Marinella Sciortino
Block Sorting-Based Transformations on Words: Beyond the Magic BWT.
1-17
2018
DLT
https://doi.org/10.1007/978-3-319-98654-8_1
conf/dlt/2018
db/conf/dlt/dlt2018.html#GiancarloMRRS18
Umberto Ferraro Petrillo
Mara Sorella
Giuseppe Cattaneo
Raffaele Giancarlo
Simona E. Rombo
Analyzing Big Datasets of Genomic Sequences: Fast and Scalable Collection of k-mer Statistics.
2018
abs/1807.01566
CoRR
http://arxiv.org/abs/1807.01566
db/journals/corr/corr1807.html#abs-1807-01566
Umberto Ferraro Petrillo
Gianluca Roscigno
Giuseppe Cattaneo
Raffaele Giancarlo
FASTdoop: a versatile and efficient library for the input of FASTA and FASTQ files for MapReduce Hadoop bioinformatics applications.
1575-1577
2017
33
Bioinform.
10
https://doi.org/10.1093/bioinformatics/btx010
https://www.wikidata.org/entity/Q36250790
db/journals/bioinformatics/bioinformatics33.html#PetrilloRCG17
Giuseppe Cattaneo
Umberto Ferraro Petrillo
Raffaele Giancarlo
Gianluca Roscigno
An effective extension of the applicability of alignment-free biological sequence comparison algorithms with Hadoop.
1467-1483
2017
73
J. Supercomput.
4
https://doi.org/10.1007/s11227-016-1835-3
db/journals/tjs/tjs73.html#CattaneoPGR17
Filippo Utro
Valeria Di Benedetto
Davide F. V. Corona
Raffaele Giancarlo
The intrinsic combinatorial organization and information theoretic content of a sequence are correlated to the DNA encoded nucleosome organization of eukaryotic genomes.
835-842
2016
32
Bioinform.
6
https://doi.org/10.1093/bioinformatics/btv679
https://www.wikidata.org/entity/Q40312992
db/journals/bioinformatics/bioinformatics32.html#UtroBCG16
Giuseppe Cattaneo
Raffaele Giancarlo
Stefano Piotto
Umberto Ferraro Petrillo
Gianluca Roscigno
Luigi Di Biasi
MapReduce in Computational Biology - A Synopsis.
53-64
2016
WIVACE
https://doi.org/10.1007/978-3-319-57711-1_5
conf/wivace/2016
db/conf/wivace/wivace2016.html#CattaneoGPPRB16
Joong Chae Na
Paolo Ferragina
Raffaele Giancarlo
Kunsoo Park
Indexed Two-Dimensional String Matching.
973-977
2016
Encyclopedia of Algorithms
https://doi.org/10.1007/978-1-4939-2864-4_442
db/reference/algo/algo2016.html#NaFGP16
Raffaele Giancarlo
Adam L. Buchsbaum
Table Compression.
2193-2198
2016
Encyclopedia of Algorithms
https://doi.org/10.1007/978-1-4939-2864-4_418
db/reference/algo/algo2016.html#GiancarloB16
Raffaele Giancarlo
Simona E. Rombo
Filippo Utro
Epigenomic k-mer dictionaries: shedding light on how sequence composition influences in vivo nucleosome positioning.
2939-2946
2015
31
Bioinform.
18
https://doi.org/10.1093/bioinformatics/btv295
https://www.wikidata.org/entity/Q40905003
db/journals/bioinformatics/bioinformatics31.html#GiancarloRU15
Raffaele Giancarlo
Davide Scaturro
Filippo Utro
ValWorkBench: An open source Java library for cluster validation, with applications to microarray data analysis.
207-217
2015
118
Comput. Methods Programs Biomed.
2
https://doi.org/10.1016/j.cmpb.2014.12.004
https://www.wikidata.org/entity/Q30884201
db/journals/cmpb/cmpb118.html#GiancarloSU15
Raffaele Giancarlo
Giosuè Lo Bosco
Filippo Utro
Bayesian versus data driven model selection for microarray data.
393-402
2015
14
Nat. Comput.
3
https://doi.org/10.1007/s11047-014-9446-5
db/journals/nc/nc14.html#GiancarloBU15
Giuseppe Cattaneo
Umberto Ferraro Petrillo
Raffaele Giancarlo
Gianluca Roscigno
Alignment-Free Sequence Comparison over Hadoop for Computational Biology.
184-192
2015
ICPP Workshops
https://doi.org/10.1109/ICPPW.2015.28
https://doi.ieeecomputersociety.org/10.1109/ICPPW.2015.28
conf/icppw/2015
db/conf/icppw/icppw2015.html#CattaneoPGR15
Raffaele Giancarlo
Simona E. Rombo
Filippo Utro
Compressive biological sequence analysis and archival in the era of high-throughput sequencing technologies.
390-406
2014
15
Briefings Bioinform.
3
https://doi.org/10.1093/bib/bbt088
https://www.wikidata.org/entity/Q27021183
db/journals/bib/bib15.html#GiancarloRU14
Massimo Cossentino
Daniele Dalle Nogare
Raffaele Giancarlo
Carmelo Lodato
Salvatore Lopes
Patrizia Ribino
Luca Sabatucci
Valeria Seidita
GIMT: A Tool for Ontology and Goal Modeling in BDI Multi-Agent Design.
2014
WOA
https://ceur-ws.org/Vol-1260/paper10.pdf
conf/woa/2014
db/conf/woa/woa2014.html#CossentinoNGLLR14
Raffaele Giancarlo
Giosuè Lo Bosco
Luca Pinello
Filippo Utro
A methodology to assess the intrinsic discriminative ability of a distance function and its interplay with clustering algorithms for microarray data analysis.
S6
2013
14
BMC Bioinform.
S-1
https://doi.org/10.1186/1471-2105-14-S1-S6
https://www.wikidata.org/entity/Q34569794
db/journals/bmcbi/bmcbi14S.html#GiancarloBPU13
Raffaele Giancarlo
Giovanni Manzini
Foreword.
1
2013
483
Theor. Comput. Sci.
https://doi.org/10.1016/j.tcs.2012.12.022
db/journals/tcs/tcs483.html#GiancarloM13
Raffaele Giancarlo
Algorithmics for the Life Sciences.
167-186
2013
The Power of Algorithms
https://doi.org/10.1007/978-3-642-39652-6_7
books/sp/2013AP
db/books/collections/AP2013.html#Giancarlo13
Raffaele Giancarlo
Davide Scaturro
Filippo Utro
Textual data compression in computational biology: Algorithmic techniques.
1-25
2012
6
Comput. Sci. Rev.
1
https://doi.org/10.1016/j.cosrev.2011.11.001
db/journals/csr/csr6.html#GiancarloSU12
Raffaele Giancarlo
Filippo Utro
Algorithmic paradigms for stability-based cluster validity and model selection statistical methods, with applications to microarray data analysis.
58-79
2012
428
Theor. Comput. Sci.
https://doi.org/10.1016/j.tcs.2012.01.024
db/journals/tcs/tcs428.html#GiancarloU12
Raffaele Giancarlo
Filippo Utro
Stability-Based Model Selection for High Throughput Genomic Data: An Algorithmic Paradigm.
260-270
2012
ICARIS
https://doi.org/10.1007/978-3-642-33757-4_20
conf/icaris/2012
db/conf/icaris/icaris2012.html#GiancarloU12
Davide Corona
Valeria Di Benedetto
Raffaele Giancarlo
Filippo Utro
The Chromatin Organization of an Eukaryotic Genome : Sequence Specific+ Statistical=Combinatorial (Extended Abstract)
http://arxiv.org/abs/1205.6010
2012
CoRR
abs/1205.6010
db/journals/corr/corr1205.html#abs-1205-6010
Raffaele Giancarlo
Filippo Utro
Speeding up the Consensus Clustering methodology for microarray data analysis.
1
2011
6
Algorithms Mol. Biol.
https://doi.org/10.1186/1748-7188-6-1
https://www.wikidata.org/entity/Q30498126
db/journals/almob/almob6.html#GiancarloU11
Raffaele Giancarlo
Giovanni Manzini
Combinatorial Pattern Matching - 22nd Annual Symposium, CPM 2011, Palermo, Italy, June 27-29, 2011. Proceedings
6661
2011
https://doi.org/10.1007/978-3-642-21458-5
978-3-642-21457-8
CPM
Lecture Notes in Computer Science
Springer
db/conf/cpm/cpm2011.html
Raffaele Giancarlo
Giosuè Lo Bosco
Luca Pinello
Filippo Utro
The Three Steps of Clustering in the Post-Genomic Era: A Synopsis.
13-30
2010
CIBB
https://doi.org/10.1007/978-3-642-21946-7_2
conf/cibb/2010
db/conf/cibb/cibb2010.html#GiancarloBPU10
Raffaele Giancarlo
Giosuè Lo Bosco
Luca Pinello
Distance Functions, Clustering Algorithms and Microarray Data Analysis.
125-138
2010
LION
https://doi.org/10.1007/978-3-642-13800-3_10
conf/lion/2010
db/conf/lion/lion2010.html#GiancarloBP10
Raffaele Giancarlo
Davide Corona
Valeria Di Benedetto
Alessandra Gabriele
Filippo Utro
Functional Information, Biomolecular Messages and Complexity of BioSequences and Structures.
2010
Structure Discovery in Biology: Motifs, Networks & Phylogenies
http://drops.dagstuhl.de/opus/volltexte/2010/2688/
conf/dagstuhl/2010P10231
db/conf/dagstuhl/P10231.html#GiancarloCBGU10
Raffaele Giancarlo
Davide Scaturro
Filippo Utro
Textual data compression in computational biology: a synopsis.
1575-1586
2009
25
Bioinform.
13
https://doi.org/10.1093/bioinformatics/btp117
https://www.wikidata.org/entity/Q33413590
db/journals/bioinformatics/bioinformatics25.html#GiancarloSU09
Paolo Ferragina
Raffaele Giancarlo
Giovanni Manzini
The myriad virtues of Wavelet Trees.
849-866
2009
207
Inf. Comput.
8
https://doi.org/10.1016/j.ic.2008.12.010
db/journals/iandc/iandc207.html#FerraginaGM09
Raffaele Giancarlo
Davide Scaturro
Filippo Utro
Computational cluster validation for microarray data analysis: experimental assessment of Clest, Consensus Clustering, Figure of Merit, Gap Statistics and Model Explorer.
2008
9
BMC Bioinform.
https://doi.org/10.1186/1471-2105-9-462
https://www.wikidata.org/entity/Q33380438
db/journals/bmcbi/bmcbi9.html#GiancarloSU08
Alberto Apostolico
Raffaele Giancarlo
Periodicity and repetitions in parameterized strings.
1389-1398
2008
156
Discret. Appl. Math.
9
https://doi.org/10.1016/j.dam.2006.11.017
db/journals/dam/dam156.html#ApostolicoG08
Raffaele Giancarlo
Davide Scaturro
Filippo Utro
A Tutorial on Computational Cluster Analysis with Applications to Pattern Discovery in Microarray Data.
655-672
2008
1
Math. Comput. Sci.
4
https://doi.org/10.1007/s11786-007-0025-3
db/journals/mics/mics1.html#GiancarloSU08
Raffaele Giancarlo
Sridhar Hannenhalli
Guest Editors' Introduction to the Special Section on Algorithms in Bioinformatics.
482-483
2008
5
IEEE ACM Trans. Comput. Biol. Bioinform.
4
https://doi.org/10.1109/TCBB.2008.116
https://doi.ieeecomputersociety.org/10.1109/TCBB.2008.116
https://dl.acm.org/doi/10.1109/TCBB.2008.116
db/journals/tcbb/tcbb5.html#GiancarloH08
Raffaele Giancarlo
Stefano Lonardi
Foreword: Special issue in honor of the 60th Birthday of Professor Alberto Apostolico: Work is for people who do not know how to: SAIL - String Algorithms, Information and Learning.
135-136
2008
395
Theor. Comput. Sci.
2-3
https://doi.org/10.1016/j.tcs.2008.01.016
https://www.wikidata.org/entity/Q120993920
db/journals/tcs/tcs395.html#GiancarloL08
Adam L. Buchsbaum
Raffaele Giancarlo
Balázs Rácz
New results for finding common neighborhoods in massive graphs in the data stream model.
302-309
2008
407
Theor. Comput. Sci.
1-3
https://doi.org/10.1016/j.tcs.2008.06.056
db/journals/tcs/tcs407.html#BuchsbaumGR08
Adam L. Buchsbaum
Raffaele Giancarlo
Table Compression.
2008
Encyclopedia of Algorithms
https://doi.org/10.1007/978-0-387-30162-4_418
reference/algo/2008
db/reference/algo/algo2008.html#BuchsbaumG08
Joong Chae Na
Paolo Ferragina
Raffaele Giancarlo
Kunsoo Park
Two-Dimensional Pattern Indexing.
2008
Encyclopedia of Algorithms
https://doi.org/10.1007/978-0-387-30162-4_442
reference/algo/2008
db/reference/algo/algo2008.html#NaFGP08
Joong Chae Na
Raffaele Giancarlo
Kunsoo Park
On-Line Construction of Two-Dimensional Suffix Trees in O(n2 log n) Time.
173-186
2007
48
Algorithmica
2
https://doi.org/10.1007/s00453-007-0063-x
db/journals/algorithmica/algorithmica48.html#NaGP07
Raffaele Giancarlo
Alessandro Siragusa
Enrico Siragusa
Filippo Utro
A basic analysis toolkit for biological sequences.
2007
2
Algorithms Mol. Biol.
https://doi.org/10.1186/1748-7188-2-10
https://www.wikidata.org/entity/Q33299384
db/journals/almob/almob2.html#GiancarloSSU07
Alberto Apostolico
Raffaele Giancarlo
Concettina Guerra
Giuseppe Lancia
Articles selected from posters presented at the Tenth Annual International Conference on Research in Computational Biology - Preface.
2007
8
BMC Bioinform.
S-5
https://doi.org/10.1186/1471-2105-8-S5-S1
https://www.wikidata.org/entity/Q46231175
db/journals/bmcbi/bmcbi8S.html#ApostolicoGGL07
Paolo Ferragina
Raffaele Giancarlo
Valentina Greco
Giovanni Manzini
Gabriel Valiente
Compression-based classification of biological sequences and structures via the Universal Similarity Metric: experimental assessment.
2007
8
BMC Bioinform.
https://doi.org/10.1186/1471-2105-8-252
https://www.wikidata.org/entity/Q30832630
db/journals/bmcbi/bmcbi8.html#FerraginaGGMV07
Raffaele Giancarlo
Antonio Restivo
Marinella Sciortino
From first principles to the Burrows and Wheeler transform and beyond, via combinatorial optimization.
236-248
2007
387
Theor. Comput. Sci.
3
https://doi.org/10.1016/j.tcs.2007.07.019
db/journals/tcs/tcs387.html#GiancarloRS07
Raffaele Giancarlo
Sridhar Hannenhalli
Algorithms in Bioinformatics, 7th International Workshop, WABI 2007, Philadelphia, PA, USA, September 8-9, 2007, Proceedings
WABI
Lecture Notes in Computer Science
4645
Springer
2007
978-3-540-74125-1
https://doi.org/10.1007/978-3-540-74126-8
db/conf/wabi/wabi2007.html
Paolo Ferragina
Raffaele Giancarlo
Giovanni Manzini
The Engineering of a Compression Boosting Library: Theory vs Practice in BWT Compression.
756-767
2006
conf/esa/2006
ESA
https://doi.org/10.1007/11841036_67
db/conf/esa/esa2006.html#FerraginaGM06
Paolo Ferragina
Raffaele Giancarlo
Giovanni Manzini
The Myriad Virtues of Wavelet Trees.
560-571
2006
conf/icalp/2006-1
ICALP (1)
https://doi.org/10.1007/11786986_49
db/conf/icalp/icalp2006-1.html#FerraginaGM06
Vito Di Gesù
Raffaele Giancarlo
Giosuè Lo Bosco
Alessandra Raimondi
Davide Scaturro
GenClust: A genetic algorithm for clustering gene expression data.
289
2005
6
BMC Bioinform.
https://doi.org/10.1186/1471-2105-6-289
https://www.wikidata.org/entity/Q25256986
db/journals/bmcbi/bmcbi6.html#GesuGBRS05
Alberto Apostolico
Raffaele Giancarlo
Periodicity and Repetitions in Parameterized Strings.
227-230
2005
21
Electron. Notes Discret. Math.
https://doi.org/10.1016/j.endm.2005.07.030
db/journals/endm/endm21.html#ApostolicoG05
Paolo Ferragina
Raffaele Giancarlo
Giovanni Manzini
Marinella Sciortino
Boosting textual compression in optimal linear time.
688-713
2005
52
J. ACM
4
https://doi.org/10.1145/1082036.1082043
db/journals/jacm/jacm52.html#FerraginaGMS05
Alberto Apostolico
Raffaele Giancarlo
Foreword: Pattern Discovery in the Post Genome.
1-2
2005
335
Theor. Comput. Sci.
1
https://doi.org/10.1016/j.tcs.2004.12.011
db/journals/tcs/tcs335.html#ApostolicoG05
Joong Chae Na
Raffaele Giancarlo
Kunsoo Park
O(n2log n) Time On-Line Construction of Two-Dimensional Suffix Trees.
273-282
2005
conf/cocoon/2005
COCOON
https://doi.org/10.1007/11533719_29
db/conf/cocoon/cocoon2005.html#NaGP05
Raffaele Giancarlo
David Sankoff
Editorial: Combinatiorial Pattern Matching.
135-136
2004
2
J. Discrete Algorithms
2
https://doi.org/10.1016/j.jda.2004.04.010
db/journals/jda/jda2.html#GiancarloS04
Maxime Crochemore
Raffaele Giancarlo
Marie-France Sagot
Longest Motifs with a Functionally Equivalent Central Block.
298-209
https://doi.org/10.1007/978-3-540-30213-1_42
2004
conf/spire/2004
SPIRE
db/conf/spire/spire2004.html#CrochemoreGS04
Adam L. Buchsbaum
Glenn S. Fowler
Raffaele Giancarlo
Improving table compression with combinatorial optimization.
825-851
2003
50
J. ACM
6
https://doi.org/10.1145/950620.950622
db/journals/jacm/jacm50.html#BuchsbaumFG03
Adam L. Buchsbaum
Raffaele Giancarlo
Jeffery R. Westbrook
On finding common neighborhoods in massive graphs.
707-718
2003
1-3
Theor. Comput. Sci.
299
https://doi.org/10.1016/S0304-3975(02)00569-8
db/journals/tcs/tcs299.html#BuchsbaumGW03
Raffaele Giancarlo
Marinella Sciortino
Optimal Partitions of Strings: A New Class of Burrows-Wheeler Compression Algorithms.
129-143
2003
conf/cpm/2003
CPM
https://doi.org/10.1007/3-540-44888-8_10
db/conf/cpm/cpm2003.html#GiancarloS03
Brenda S. Baker
Raffaele Giancarlo
Sparse Dynamic Programming for Longest Common Subsequence from Fragments.
231-254
2002
42
J. Algorithms
2
https://doi.org/10.1006/jagm.2002.1214
db/journals/jal/jal42.html#BakerG02
Adam L. Buchsbaum
Glenn S. Fowler
Raffaele Giancarlo
Improving table compression with combinatorial optimization.
213-222
2002
conf/soda/2002
SODA
http://dl.acm.org/citation.cfm?id=545381.545408
db/conf/soda/soda2002.html#BuchsbaumFG02
Adam L. Buchsbaum
Glenn S. Fowler
Raffaele Giancarlo
Improving Table Compression with Combinatorial Optimization
https://arxiv.org/abs/cs/0203018
2002
CoRR
cs.DS/0203018
db/journals/corr/corr0203.html#cs-DS-0203018
Adam L. Buchsbaum
Raffaele Giancarlo
Jeffery R. Westbrook
An Approximate Determinization Algorithm for Weighted Finite-State Automata.
503-526
2001
30
Algorithmica
4
https://doi.org/10.1007/s00453-001-0026-6
db/journals/algorithmica/algorithmica30.html#BuchsbaumGW01
Adam L. Buchsbaum
Raffaele Giancarlo
Jeffery R. Westbrook
On the Determinization of Weighted Finite Automata.
1502-1531
2000
30
SIAM J. Comput.
5
https://doi.org/10.1137/S0097539798346676
db/journals/siamcomp/siamcomp30.html#BuchsbaumGW00
Adam L. Buchsbaum
Raffaele Giancarlo
Algorithmic Aspects of Speech Recognition: A Synopsis.
27-32
https://doi.org/10.1007/3-540-45123-4_4
2000
conf/cpm/2000
CPM
db/conf/cpm/cpm2000.html#BuchsbaumG00
Raffaele Giancarlo
David Sankoff
Combinatorial Pattern Matching, 11th Annual Symposium, CPM 2000, Montreal, Canada, June 21-23, 2000, Proceedings
CPM
Lecture Notes in Computer Science
1848
Springer
2000
3-540-67633-3
https://doi.org/10.1007/3-540-45123-4
db/conf/cpm/cpm2000.html
Raffaele Giancarlo
Roberto Grossi
Parallel Construction and Query of Index Data Structures for Pattern Matching on Square Matrices.
30-71
1999
15
J. Complex.
1
https://doi.org/10.1006/jcom.1998.0496
db/journals/jc/jc15.html#GiancarloG99
Raffaele Giancarlo
Daniela Guaiana
On-line Construction of Two-Dimensional Suffix Trees.
72-127
1999
15
J. Complex.
1
https://doi.org/10.1006/jcom.1998.0495
db/journals/jc/jc15.html#GiancarloG99a
Alberto Apostolico
Raffaele Giancarlo
Seqeunce Alignment in Molecular Biology.
173-196
1998
5
J. Comput. Biol.
2
db/journals/jcb/jcb5.html#ApostolicoG98
https://doi.org/10.1089/cmb.1998.5.173
https://www.wikidata.org/entity/Q52239463
Alberto Apostolico
Raffaele Giancarlo
Sequence alignment in molecular biology.
85-115
1998
Mathematical Support for Molecular Biology
conf/dimacs/dimacs47
db/conf/dimacs/dimacs47.html#ApostolicoG98
https://doi.org/10.1090/dimacs/047/05
Brenda S. Baker
Raffaele Giancarlo
Longest Common Subsequence from Fragments via Sparse Dynamic Programming.
79-90
https://doi.org/10.1007/3-540-68530-8_7
1998
conf/esa/1998
ESA
db/conf/esa/esa98.html#BakerG98
Adam L. Buchsbaum
Raffaele Giancarlo
Jeffery R. Westbrook
On the Determinization of Weighted Finite Automata.
482-493
https://doi.org/10.1007/BFb0055077
1998
conf/icalp/1998
ICALP
db/conf/icalp/icalp98.html#BuchsbaumGW98
Adam L. Buchsbaum
Raffaele Giancarlo
Jeffery R. Westbrook
Shrinking language models by robust approximation.
685-688
1998
ICASSP
https://doi.org/10.1109/ICASSP.1998.675357
conf/icassp/1998
db/conf/icassp/icassp1998.html#BuchsbaumGW98
Raffaele Giancarlo
Roberto Grossi
Multi-Dimensional Pattern Matching with Dimensional Wildcards: Data Structures and Optimal On-Line Search Algorithms.
223-265
1997
24
J. Algorithms
2
db/journals/jal/jal24.html#GiancarloG97
https://doi.org/10.1006/jagm.1996.0844
Adam L. Buchsbaum
Raffaele Giancarlo
Algorithmic Aspects in Speech Recognition: An Introduction.
1
1997
2
ACM J. Exp. Algorithmics
https://doi.org/10.1145/264216.264219
db/journals/jea/jea2.html#BuchsbaumG97
Raffaele Giancarlo
Daniela Guaiana
On-Line Construction of Two-Dimensional Suffix Trees.
217-231
1997
conf/esa/1997
ESA
db/conf/esa/esa97.html#GiancarloG97
https://doi.org/10.1007/3-540-63397-9_17
Raffaele Giancarlo
Dynamic programming: special cases.
201-236
1997
Pattern Matching Algorithms
books/ox/AG1997
db/books/collections/AG1997.html#Giancarlo97
Raffaele Giancarlo
Roberto Grossi
Suffix tree data structures for matrices.
293-340
1997
Pattern Matching Algorithms
books/ox/AG1997
db/books/collections/AG1997.html#GiancarloG97
Raffaele Giancarlo
Roberto Grossi
On the Construction of Classes of Suffix Trees for Square Matrices: Algorithms and Applications.
151-182
1996
130
Inf. Comput.
2
db/journals/iandc/iandc130.html#GiancarloG96
https://doi.org/10.1006/inco.1996.0087
Raffaele Giancarlo
A Generalization of the Suffix Tree to Square Matrices, with Applications.
520-562
1995
24
SIAM J. Comput.
3
db/journals/siamcomp/siamcomp24.html#Giancarlo95
https://doi.org/10.1137/S0097539792231982
Raffaele Giancarlo
Roberto Grossi
Multi-Dimensional Pattern Matching with Dimensional Wildcards.
90-101
1995
conf/cpm/95
CPM
db/conf/cpm/cpm95.html#GiancarloG95
https://doi.org/10.1007/3-540-60044-2_37
Raffaele Giancarlo
Roberto Grossi
On the Construction of Classes of Suffix Trees for Square Matrices: Algorithms and Applications.
111-122
1995
conf/icalp/1995
ICALP
db/conf/icalp/icalp95.html#GiancarloG95
https://doi.org/10.1007/3-540-60084-1_67
Amihood Amir
Martin Farach
Zvi Galil
Raffaele Giancarlo
Kunsoo Park
Dynamic Dictionary Matching.
208-222
1994
49
J. Comput. Syst. Sci.
2
db/journals/jcss/jcss49.html#AmirFGBP94
https://doi.org/10.1016/S0022-0000(05)80047-9
Raffaele Giancarlo
Filippo Mignosi
Generalizations of the Periodicity Theorem of Fine and Wilf.
130-141
1994
conf/caap/1994
CAAP
db/conf/caap/caap94.html#GiancarloM94
https://doi.org/10.1007/BFb0017478
Raffaele Giancarlo
The Suffix of a Square Matrix, with Applications.
402-411
1993
conf/soda/1993
SODA
db/conf/soda/soda93.html#Giancarlo93
http://dl.acm.org/citation.cfm?id=313559.313842
Raffaele Giancarlo
Roberto Grossi
Parallel Construction and Query of Suffix Trees for Two-Dimensional Matrices.
86-97
1993
conf/spaa/1993
SPAA
https://doi.org/10.1145/165231.165243
db/conf/spaa/spaa93.html#GiancarloG93
Raffaele Giancarlo
An Index Data Structure For Matrices, with Applications to Fast Two-Dimensional Pattern Matching.
337-348
1993
conf/wads/1993
WADS
db/conf/wads/wads93.html#Giancarlo93
https://doi.org/10.1007/3-540-57155-8_260
David Eppstein
Zvi Galil
Raffaele Giancarlo
Giuseppe F. Italiano
Sparse Dynamic Programming I: Linear Cost Functions.
519-545
1992
39
J. ACM
3
db/journals/jacm/jacm39.html#EppsteinGGI92
https://doi.org/10.1145/146637.146650
https://www.wikidata.org/entity/Q61609659
David Eppstein
Zvi Galil
Raffaele Giancarlo
Giuseppe F. Italiano
Sparse Dynamic Programming II: Convex and Concave Cost Functions.
546-567
1992
39
J. ACM
3
db/journals/jacm/jacm39.html#EppsteinGGI92a
https://doi.org/10.1145/146637.146656
https://www.wikidata.org/entity/Q61609664
Zvi Galil
Raffaele Giancarlo
On the Exact Complexity of String Matching: Upper Bounds.
407-437
1992
21
SIAM J. Comput.
3
db/journals/siamcomp/siamcomp21.html#GalilG92
https://doi.org/10.1137/0221028
Zvi Galil
Raffaele Giancarlo
On the Exact Complexity of String Matching: Lower Bounds.
1008-1020
1991
20
SIAM J. Comput.
6
db/journals/siamcomp/siamcomp20.html#GalilG91
https://doi.org/10.1137/0220063
On the Exact Complexity of String Matching (Extended Abstract)
Livio Colussi
Zvi Galil
Raffaele Giancarlo
135-144
conf/focs/FOCS31a
1990
FOCS
db/conf/focs/focs90.html#ColussiGG90
https://doi.org/10.1109/FSCS.1990.89532
https://doi.ieeecomputersociety.org/10.1109/FSCS.1990.89532
David Eppstein
Zvi Galil
Raffaele Giancarlo
Giuseppe F. Italiano
Sparse Dynamic Programming.
513-522
1990
conf/soda/1990
SODA
db/conf/soda/soda90.html#EppsteinGGI90
http://dl.acm.org/citation.cfm?id=320176.320238
Zvi Galil
Raffaele Giancarlo
Speeding up Dynamic Programming with Applications to Molecular Biology.
107-118
1989
64
Theor. Comput. Sci.
1
db/journals/tcs/tcs64.html#GalilG89
https://doi.org/10.1016/0304-3975(89)90101-1
Zvi Galil
Raffaele Giancarlo
Data structures and algorithms for approximate string matching.
33-72
1988
4
J. Complex.
1
https://doi.org/10.1016/0885-064X(88)90008-8
db/journals/jc/jc4.html#GalilG88
Speeding up Dynamic Programming
David Eppstein
Zvi Galil
Raffaele Giancarlo
488-496
conf/focs/FOCS29
1988
FOCS
db/conf/focs/focs88.html#EppsteinGG88
https://doi.org/10.1109/SFCS.1988.21965
https://doi.ieeecomputersociety.org/10.1109/SFCS.1988.21965
Zvi Galil
Raffaele Giancarlo
Parallel String Matching with k Mismatches.
341-348
1987
51
Theor. Comput. Sci.
db/journals/tcs/tcs51.html#GalilG87
https://doi.org/10.1016/0304-3975(87)90042-9
Wojciech Rytter
Raffaele Giancarlo
Optimal Parallel Parsing of Bracket Languages.
295-306
1987
53
Theor. Comput. Sci.
db/journals/tcs/tcs53.html#RytterG87
https://doi.org/10.1016/0304-3975(87)90070-3
Wojciech Rytter
Raffaele Giancarlo
Optimal Parallel Parsing of Bracket Languages.
146-154
1987
conf/paa/1987
Parallel Algorithms and Architectures
db/conf/paa/paa1987.html#RytterG87
https://doi.org/10.1007/3-540-18099-0_40
Alberto Apostolico
Raffaele Giancarlo
The Boyer-Moore-Galil String Searching Strategies Revisited.
98-105
1986
15
SIAM J. Comput.
1
db/journals/siamcomp/siamcomp15.html#ApostolicoG86
https://doi.org/10.1137/0215007
Zvi Galil
Raffaele Giancarlo
Improved string matching with k mismatches.
52-54
1986
17
SIGACT News
4
https://doi.org/10.1145/8307.8309
db/journals/sigact/sigact17.html#GalilG86
Renato M. Capocelli
Raffaele Giancarlo
Inder Jeet Taneja
Bounds on the redundancy of Huffman codes.
854-857
1986
32
IEEE Trans. Inf. Theory
6
db/journals/tit/tit32.html#CapocelliGT86
https://doi.org/10.1109/TIT.1986.1057239
Alberto Apostolico
Raffaele Giancarlo
Pattern Matching Machine Implementation of a Fast Test for Unique Decipherability.
155-158
1984
18
Inf. Process. Lett.
3
db/journals/ipl/ipl18.html#ApostolicoG84
https://doi.org/10.1016/0020-0190(84)90020-6
Domenico Amato
Amihood Amir
Alberto Apostolico
Brenda S. Baker
Valeria Di Benedetto
Luigi Di Biasi
Mariella Bonomo
Giosuè Lo Bosco
Adam L. Buchsbaum
Renato M. Capocelli
Giuseppe Cattaneo
Paolo Ciancarini
Livio Colussi
Davide CoronaDavide F. V. Corona
Massimo Cossentino
Maxime Crochemore
David Eppstein
Martin Farach-ColtonMartin Farach
Paolo Ferragina
Glenn S. Fowler
Marco Frasca 0001
Giacomo Fumagalli
Alessandra Gabriele
Zvi Galil
Ylenia Galluzzo
Vito Di Gesù
Daniele Greco
Valentina Greco
Gennaro Grimaudo
Roberto Grossi
Daniela Guaiana
Concettina Guerra
Sridhar Hannenhalli
Giuseppe F. Italiano
Giuseppe Lancia
Francesco Landolina
Carmelo Lodato
Stefano Lonardi
Salvatore Lopes
Dario Malchiodi
Giovanni Manzini
Filippo Mignosi
Joong Chae Na
Daniele Dalle Nogare
Francesco Palini
Kunsoo Park
Umberto Ferraro Petrillo
Luca Pinello
Stefano Piotto
Balázs Rácz
Alessandra Raimondi
Davide Raimondi
Mario Randazzo
Antonio Restivo
Patrizia Ribino
Simona E. Rombo
Chiara Romualdi
Gianluca Roscigno
Giovanna Rosone
Wojciech Rytter
Luca Sabatucci
Marie-France Sagot
David Sankoff
Davide Scaturro
Marinella Sciortino
Valeria Seidita
Alessandro Siragusa
Enrico Siragusa
Mara Sorella
Inder Jeet Taneja
Filippo Utro
Gabriel Valiente
Jeffery R. Westbrook