Dong-Guk Shin
Chenyu Zhang
Honglin Wang
Seung-Hyun Hong
Riqiang Yan
Dong-Guk Shin
Using Biological Processes as Prior Knowledge Identifies New Microglial Immune Signatures at Single Cell Level in Alzheimer's Disease.
3756-3763
2023
BIBM
https://doi.org/10.1109/BIBM58861.2023.10386053
conf/bibm/2023
db/conf/bibm/bibm2023.html#ZhangWHYS23
Honglin Wang
Pujan Joshi
Chenyu Zhang
Peter F. Maye
David W. Rowe
Dong-Guk Shin
rCom: a route-based framework inferring cell type communication and regulatory network using single cell data.
27:1-27:4
2022
BCB
https://doi.org/10.1145/3535508.3545514
conf/bcb/2022
db/conf/bcb/bcb2022.html#WangJZMRS22
Chenyu Zhang
Pujan Joshi
Honglin Wang
Seung-Hyun Hong
Riqiang Yan
Dong-Guk Shin
Pola Viz Reveals Microglia Polarization at Single Cell Level in Alzheimer's Disease.
1387-1392
2022
BIBM
https://doi.org/10.1109/BIBM55620.2022.9995671
conf/bibm/2022
db/conf/bibm/bibm2022.html#ZhangJWHYS22
Timothy James Becker
Dashzeveg Bayarsaihan
Dong-Guk Shin
A framework for associating structural variants with cell-specific transcription factors and histone modifications in defect phenotypes.
3616-3621
2022
BIBM
https://doi.org/10.1109/BIBM55620.2022.9995130
conf/bibm/2022
db/conf/bibm/bibm2022.html#BeckerBS22
Timothy James Becker
Dong-Guk Shin
Structural variation calling and genotyping by moment-based deep convolutional neural networks.
37-52
2021
25
Int. J. Data Min. Bioinform.
1/2
https://doi.org/10.1504/IJDMB.2021.116880
db/journals/ijdmb/ijdmb25.html#BeckerS21
Yue Zhao
Dong-Guk Shin
Deep Pathway Analysis V2.0: A Pathway Analysis Framework Incorporating Multi-Dimensional Omics Data.
373-385
2021
18
IEEE ACM Trans. Comput. Biol. Bioinform.
1
https://doi.org/10.1109/TCBB.2019.2945959
https://www.wikidata.org/entity/Q90655249
db/journals/tcbb/tcbb18.html#ZhaoS21
Pujan Joshi
Honglin Wang
Salvatore Jaramillo
Seung-Hyun Hong
Charles Giardina
Dong-Guk Shin
Identification of Crosstalk between Biological Pathway Routes in Cancer Cohorts.
245-248
2021
BIBM
https://doi.org/10.1109/BIBM52615.2021.9669832
conf/bibm/2021
db/conf/bibm/bibm2021.html#JoshiWJHGS21
Honglin Wang
Pujan Joshi
Seung-Hyun Hong
Dong-Ju Shin
Dong-Guk Shin
ctBuilder: A framework for building pathway crosstalks by combining single cell data with bulk cell data.
270-273
2021
BIBM
https://doi.org/10.1109/BIBM52615.2021.9669811
conf/bibm/2021
db/conf/bibm/bibm2021.html#WangJHSS21
Timothy James Becker
Dong-Guk Shin
Efficient methods for hierarchical multi-omic feature extraction and visualisation.
285-298
2020
23
Int. J. Data Min. Bioinform.
4
https://doi.org/10.1504/IJDMB.2020.108699
db/journals/ijdmb/ijdmb23.html#BeckerS20
Pujan Joshi
Brent Basso
Honglin Wang
Seung-Hyun Hong
Charles Giardina
Dong-Guk Shin
Identification of Key Biological Pathway Routes in Cancer Cohorts.
154-157
2020
BIBM
https://doi.org/10.1109/BIBM49941.2020.9313520
conf/bibm/2020
db/conf/bibm/bibm2020.html#JoshiBWHGS20
Honglin Wang
Pujan Joshi
Seung-Hyun Hong
Peter F. Maye
David W. Rowe
Dong-Guk Shin
cTAP: A Machine Learning Framework for Predicting Target Genes of a Transcription Factor using a Cohort of Gene Expression Data Sets.
164-167
2020
BIBM
https://doi.org/10.1109/BIBM49941.2020.9313303
conf/bibm/2020
db/conf/bibm/bibm2020.html#WangJHMRS20
Timothy James Becker
Dong-Guk Shin
TensorSV: structural variation inference using tensors and variable topology neural networks.
1356-1360
2020
BIBM
https://doi.org/10.1109/BIBM49941.2020.9313154
conf/bibm/2020
db/conf/bibm/bibm2020.html#BeckerS20
Pujan Joshi
Honglin Wang
Brent Basso
Seung-Hyun Hong
Charles Giardina
Dong-Guk Shin
A Framework for Route Based Pathway Analysis of Gene Expression Data.
20-26
2020
ICCBB
https://doi.org/10.1145/3449258.3449262
conf/iccbb/2020
db/conf/iccbb/iccbb2020.html#JoshiWBHGS20
Asa Thibodeau
Dong-Guk Shin
TriPOINT: a software tool to prioritize important genes in pathways and their non-coding regulators.
2686-2689
2019
35
Bioinform.
15
https://doi.org/10.1093/bioinformatics/bty998
https://www.wikidata.org/entity/Q90636820
db/journals/bioinformatics/bioinformatics35.html#ThibodeauS19
Yue Zhao
Pujan Joshi
Dong-Guk Shin
Recurrent Neural Network for Gene Regulation Network Construction on Time Series Expression Data.
610-615
2019
BIBM
https://doi.org/10.1109/BIBM47256.2019.8983068
conf/bibm/2019
db/conf/bibm/bibm2019.html#ZhaoJS19
Timothy James Becker
Dong-Guk Shin
HFM: Hierarchical Feature Moment Extraction for Multi-Omic Data Visualization.
1970-1976
2019
BIBM
https://doi.org/10.1109/BIBM47256.2019.8983015
conf/bibm/2019
db/conf/bibm/bibm2019.html#BeckerS19
Asa Thibodeau
Eladio J. Márquez
Oscar Luo
Yijun Ruan
Francesca Menghi
Dong-Guk Shin
Michael L. Stitzel
Paola Vera-Licona
Duygu Ucar
QuIN: A Web Server for Querying and Visualizing Chromatin Interaction Networks.
2016
12
PLoS Comput. Biol.
6
https://doi.org/10.1371/journal.pcbi.1004809
https://www.wikidata.org/entity/Q36059754
https://orkg.org/resource/R168616
db/journals/ploscb/ploscb12.html#ThibodeauMLRMSS16
Yue Zhao
Tham H. Hoang
Pujan Joshi
Seung-Hyun Hong
Dong-Guk Shin
Deep pathway analysis incorporating mutation information and gene expression data.
260-265
2016
BIBM
https://doi.org/10.1109/BIBM.2016.7822528
https://doi.ieeecomputersociety.org/10.1109/BIBM.2016.7822528
conf/bibm/2016
db/conf/bibm/bibm2016.html#ZhaoHJHS16
Joseph Leone
Dong-Guk Shin
A Phrase-based Ontology Enabled Semantic Processing System for Web Search.
45-80
2013
6
Trans. Mach. Learn. Data Min.
2
http://www.ibai-publishing.org/journal/issue_mldm/2013_October/mldm_6_2_45_80.php
db/journals/mldm/mldm6.html#LeoneS13
Pujan Joshi
Baikang Pei
Seung-Hyun Hong
Ivo Kalajzic
Dong-Ju Shin
David W. Rowe
Dong-Guk Shin
A software framework integrating gene expression patterns, binding site analysis and gene ontology to hypothesize gene regulation relationships.
210-213
2013
BIBM
https://doi.org/10.1109/BIBM.2013.6732491
https://doi.ieeecomputersociety.org/10.1109/BIBM.2013.6732491
conf/bibm/2013
db/conf/bibm/bibm2013.html#JoshiPHKSRS13
Baikang Pei
Dong-Guk Shin
Reconstruction of Biological Networks by Incorporating Prior Knowledge into Bayesian Network Models.
1324-1334
2012
19
J. Comput. Biol.
12
https://doi.org/10.1089/cmb.2011.0194
https://www.wikidata.org/entity/Q38493712
db/journals/jcb/jcb19.html#PeiS12
Joseph Leone
Dong-Guk Shin
A Semantic Processing System (SPS) for Biomedical Literature Web Search.
38-47
2011
ICDM (Poster and Industry Proceedings)
conf/incdm/2011p
db/conf/incdm/incdm2011p.html#LeoneS11
Saira Ali Kazmi
Yoo-Ah Kim
Dong-Guk Shin
Meta analysis algorithms for microarray gene expression data using Gene Regulatory Networks.
487-504
2010
4
Int. J. Data Min. Bioinform.
5
https://doi.org/10.1504/IJDMB.2010.035896
https://www.wikidata.org/entity/Q33763533
db/journals/ijdmb/ijdmb4.html#KazmiKS10
Baikang Pei
David W. Rowe
Dong-Guk Shin
Learning Bayesian networks with integration of indirect prior knowledge.
505-519
2010
4
Int. J. Data Min. Bioinform.
5
https://doi.org/10.1504/IJDMB.2010.035897
https://www.wikidata.org/entity/Q51627719
db/journals/ijdmb/ijdmb4.html#PeiRS10
Baikang Pei
Dong-Guk Shin
Reconstruction of Biological Networks Structure by Using Bayesian Network Models with a Two-step Learning Procedure.
743-749
2010
BIOCOMP
conf/biocomp/2010
db/conf/biocomp/biocomp2010.html#PeiS10
Lung-Yung Chu
Dong-Guk Shin
An Improved Heuristic Approach for the Steiner Problem in Graphs.
154-170
2009
16
Int. J. Comput. Their Appl.
3
db/journals/isca/isca16.html#ChuS09
Dong-Guk Shin
Saira Ali Kazmi
Baikang Pei
Yoo-Ah Kim
Jeffrey Maddox
Ravi Nori
Alan Wong
Winfried Krueger
David W. Rowe
Computing Consistency Between Microarray Data and Known Gene Regulation Relationships.
1075-1082
2009
13
IEEE Trans. Inf. Technol. Biomed.
6
https://doi.org/10.1109/TITB.2009.2032540
https://www.wikidata.org/entity/Q33506916
db/journals/titb/titb13.html#ShinKPKMNWKR09
Dong-Guk Shin
Seung-Hyun Hong
Pujan Joshi
Ravi Nori
Baikang Pei
Hsin-Wei Wang
Patrick Harrington
Lynn Kuo
Ivo Kalajzic
David W. Rowe
PBC: A Software Framework Facilitating Pattern-Based Clustering for Microarray Data Analysis.
30-36
2009
IJCBS
https://doi.org/10.1109/IJCBS.2009.113
https://doi.ieeecomputersociety.org/10.1109/IJCBS.2009.113
conf/ijcbs/2009
db/conf/ijcbs/ijcbs2009.html#ShinHJNPWHKKR09
Saira Ali Kazmi
Yoo-Ah Kim
Baikang Pei
Ravi Nori
David W. Rowe
Hsin-Wei Wang
Alan Wong
Dong-Guk Shin
Meta Analysis of Microarray Data Using Gene Regulation Pathways.
37-42
2008
BIBM
https://doi.org/10.1109/BIBM.2008.32
https://doi.ieeecomputersociety.org/10.1109/BIBM.2008.32
conf/bibm/2008
db/conf/bibm/bibm2008.html#KazmiKPNRWWS08
Baikang Pei
David W. Rowe
Dong-Guk Shin
Reverse Engineering of Gene Regulatory Network by Integration of Prior Global Gene Regulatory Information.
129-134
2008
BIBM
https://doi.org/10.1109/BIBM.2008.55
https://doi.ieeecomputersociety.org/10.1109/BIBM.2008.55
conf/bibm/2008
db/conf/bibm/bibm2008.html#PeiRS08
Dong-Guk Shin
John Bluis
Yoo Ah Kim
Winfried Krueger
Jeffrey Maddox
Ravi Nori
Nathan Viniconis
Hsin-Wei Wang
Alan Wong
David W. Rowe
A Computational Inference Framework for analyzing Gene Regulation Pathway using Microarray Data.
299-306
2006
conf/bibe/2006
BIBE
db/conf/bibe/bibe2006.html#ShinBKKMNVWWR06
https://doi.org/10.1109/BIBE.2006.253293
https://doi.ieeecomputersociety.org/10.1109/BIBE.2006.253293
John Bluis
Dong-Guk Shin
Nodal Distance Algorithm: Calculating a Phylogenetic Tree Comparison Metri.
87-94
2003
conf/bibe/2003
BIBE
https://doi.org/10.1109/BIBE.2003.1188933
https://doi.ieeecomputersociety.org/10.1109/BIBE.2003.1188933
db/conf/bibe/bibe2003.html#BluisS03
Taysir Hassan A. Soliman
Dong-Guk Shin
A Comparative Study for Mining Biological Data.
202-210
2002
conf/ISCAicis/2002
IS
db/conf/ISCAicis/ISCAicis2002.html#SolimanS02
John Bluis
Ravi Nori
Hsin-Wei Wang
Pinglei Zhou
J. Peter Gogarten
Dong-Guk Shin
Comparing Trees in a Phylogenetic Relationship Repository.
166-173
2001
conf/bibe/2001
BIBE
db/conf/bibe/bibe2001.html#BluisNWZGS01
https://doi.org/10.1109/BIBE.2001.974426
https://doi.ieeecomputersociety.org/10.1109/BIBE.2001.974426
Dong-Guk Shin
Ravi Shankar Nori
CBM: A Visual Query Interface Model based on Annotated Cartoon Diagrams.
242-245
2000
conf/avi/2000
Advanced Visual Interfaces
db/conf/avi/avi2000.html#ShinN00
https://doi.org/10.1145/345513.345326
Kei-Hoi Cheung
Dong-Guk Shin
A Graph-based Meta-data Framework for Interoperation between Genome Databases.
109-117
2000
conf/bibe/2000
BIBE
db/conf/bibe/bibe2000.html#CheungS00
https://doi.org/10.1109/BIBE.2000.889597
https://doi.ieeecomputersociety.org/10.1109/BIBE.2000.889597
Changhwan Lee
Dong-Guk Shin
A Multistrategy Approach to Classification Learning in Databases.
67-93
1999
31
Data Knowl. Eng.
1
db/journals/dke/dke30.html#LeeS99
https://doi.org/10.1016/S0169-023X(99)00018-X
Changhwan Lee
Dong-Guk Shin
Using Hellinger distance in a nearest neighbour classifier for relational databases.
363-370
1999
12
Knowl. Based Syst.
7
https://doi.org/10.1016/S0950-7051(99)00041-6
db/journals/kbs/kbs12.html#LeeS99
Wally Grajewski
Dong-Guk Shin
Lei Liu
Xyntagma: a Graphical Query Interface for the ACeDB Genome Databases.
234-
1999
conf/cbms/1999
CBMS
https://doi.org/10.1109/CBMS.1999.781278
https://doi.ieeecomputersociety.org/10.1109/CBMS.1999.781278
db/conf/cbms/cbms1999.html#GrajewskiSL99
Fei Shi
Dong-Guk Shin
Centroid Trees with Application to String Processing.
61-72
1999
Stringology
http://www.stringology.org/event/1999/p5.html
conf/stringology/1999
db/conf/stringology/stringology1999.html#ShiS99
Kei-Hoi Cheung
Prakash M. Nadkarni
Dong-Guk Shin
A metadata approach to query interoperation between molecular biology databases.
486-497
1998
14
Bioinform.
6
db/journals/bioinformatics/bioinformatics14.html#CheungNS98
https://doi.org/10.1093/bioinformatics/14.6.486
https://www.wikidata.org/entity/Q38550716
Jeong Seok Lim
Dong-Guk Shin
A Methodology of Constructing Canonical Form Database Schemas in a Multiple Heterogeneous Database Environment.
4-11
1998
9
J. Database Manag.
4
db/journals/jdm/jdm9.html#LimS98
https://doi.org/10.4018/jdm.1998100101
Dong-Guk Shin
Lung-Yung Chu
Establishing Logical Connectivity between Query Keywords and Database Contents.
45-59
1998
conf/ai/1998
Canadian AI
db/conf/ai/ai1998.html#ShinC98
https://doi.org/10.1007/3-540-64575-6_39
Kei-Hoi Cheung
Prakash M. Nadkarni
Perry L. Miller
Dong-Guk Shin
Automatic query mapping among genomic databases: a pilot exploration.
1998
AMIA
https://knowledge.amia.org/amia-55142-a1998a-1.588514/t-001-1.590475/f-001-1.590476/a-182-1.590489/a-183-1.590486
conf/amia/1998
db/conf/amia/amia1998.html#CheungNMS98
Dong-Guk Shin
Wally Grajewski
Lung-Yung Chu
An epistemological display query interface.
286-288
1998
conf/avi/1998
AVI
https://doi.org/10.1145/948496.948540
db/conf/avi/avi1998.html#ShinGC98
Lung-Yung Chu
Dong-Guk Shin
An effective heuristic algorithm for finding a steiner tree in graphs.
121-124
1998
conf/cata/1998
CATA
db/conf/cata/cata1998.html#ChuS98
Richard T. Landers
Dong-Guk Shin
A lightweight computational model for achieving location transparency in distributed environments.
156-159
1998
conf/cata/1998
CATA
db/conf/cata/cata1998.html#LandersS98
Kei-Hoi Cheung
Dong-Guk Shin
A simple model capable of expressing meta-data for database interoperability.
182-185
1998
conf/cata/1998
CATA
db/conf/cata/cata1998.html#CheungS98
Jeong Seok Lim
Dong-Guk Shin
A Methodology of Constructing Canonical Form Database Schemas in a Multiple Heterogenous Database Environment.
168-175
1998
conf/iadt/1998
IADT
db/conf/iadt/iadt98.html#LimS98
Kei-Hoi Cheung
Dong-Guk Shin
A Framework Designed to Represent Both Data and Meta-Data to Enhance Database Interoperability.
184-191
1998
conf/iadt/1998
IADT
db/conf/iadt/iadt98.html#CheungS98
Dong-Guk Shin
Lei Liu
Leslie M. Loew
James C. Schaff
Virtual Cell: A General Framework for Simulating and Visualizing Cellular Physiology.
214-220
1998
conf/vdb/1998
VDB
db/conf/vdb/vdb98.html#ShinLLS98
Dong-Guk Shin
Comparative study of relational and object-oriented modelings of genomic data.
81-90
1995
conf/hicss/1995
HICSS (5)
https://doi.org/10.1109/HICSS.1995.375348
https://doi.ieeecomputersociety.org/10.1109/HICSS.1995.375348
db/conf/hicss/hicss1995.html#Shin95
Dong-Guk Shin
An Expection-Driven Response Understanding Paradigm.
430-443
TKDE6/P0430.pdf
1994
6
IEEE Trans. Knowl. Data Eng.
3
db/journals/tkde/tkde6.html#Shin94
https://doi.org/10.1109/69.334859
http://doi.ieeecomputersociety.org/10.1109/69.334859
journals/ai/AllenP80
...
...
journals/ai/BobrowKKNTW77
journals/cogsci/BrachmanS85
journals/coling/Carberry88
...
...
journals/ai/Charniak88
...
...
conf/jcdkb/Codd78
...
...
...
...
journals/ai/GroszAMP87
...
...
...
journals/ai/Kaplan82
...
journals/computer/Kellogg86
conf/aaai/Levine90
journals/cogsci/LitmanA87
conf/aaai/LochbaumGS90
...
journals/ai/McKeown85
conf/ijcai/MoerdlerME87
conf/aaai/MooreS90
journals/ai/McDermott80
...
...
conf/ijcai/Quilici89
journals/ai/Reichman-Adar84
conf/icde/Shin91
books/aw/Sowa84
...
journals/coling/WeischedelS83
...
Changhwan Lee
Dong-Guk Shin
A Context-Sensitive Discretization of Numeric Attributes for Classification Learning.
428-432
1994
conf/ecai/1994
ECAI
db/conf/ecai/ecai94.html#LeeS94
Dong-Guk Shin
François Rechenmann
Data and Knowledge Base Issues in Genomics: Introduction.
3-4
1994
conf/hicss/1994
HICSS (5)
db/conf/hicss/hicss1994.html#ShinR94
Dong-Guk Shin
Rohit Gupta
T. C. Ting
Achieving Interoperability between Heterogeneous Object-Oriented Genomic Databases.
77-86
1994
conf/hicss/1994
HICSS (5)
db/conf/hicss/hicss1994.html#ShinGT94
Changhwan Lee
Dong-Guk Shin
EEL: An Instance-Based Learning Method for Databases.
181-188
1994
conf/ieaaie/1994
IEA/AIE
http://portal.acm.org/citation.cfm?id=201081.201112
db/conf/ieaaie/ieaaie1994.html#LeeS94
Dong-Guk Shin
Changhwan Lee
Jinghui Zhang
Kenneth E. Rudd
Claire M. Berg
Redesigning, implementing and integrating Escherichia coli genome software tools with an object-oriented database system.
227-238
1992
8
Comput. Appl. Biosci.
3
db/journals/bioinformatics/bioinformatics8.html#ShinLZRB92
https://doi.org/10.1093/bioinformatics/8.3.227
https://www.wikidata.org/entity/Q54677701
Dong-Guk Shin
Keki B. Irani
Fragmenting Relations Horizontally Using a Knowledge-Based Approach.
872-883
https://doi.org/10.1109/32.92906
http://doi.ieeecomputersociety.org/10.1109/32.92906
https://www.wikidata.org/entity/Q111897593
1991
17
IEEE Trans. Software Eng.
9
db/journals/tse/tse17.html#ShinI91
Dong-Guk Shin
Joseph Leone
Am/AG Model: a Hierarchical Social System Metaphor for Distributed Problem Solving.
473-488
1990
4
Int. J. Pattern Recognit. Artif. Intell.
3
https://doi.org/10.1142/S0218001490000289
db/journals/ijprai/ijprai4.html#ShinL90
Dong-Guk Shin
S. K. Wallfesh
An Expectation-Driven Approach to Q-A Processing.
520-527
1990
conf/icsi/1990
ICSI
db/conf/icsi/icsi1990.html#ShinW90
Dong-Guk Shin
Fred J. Maryanski
Knowledge-aided engineering environment for design and manufacturing.
395-401
1988
COMPSAC
https://doi.org/10.1109/CMPSAC.1988.17204
conf/compsac/1988
db/conf/compsac/compsac1988.html#ShinM88
Dong-Guk Shin
An Extension of a First-Order Language and Its Applications (Many-Sorted Logic, Distributed Database Design, Resolution, Automatic Theorem Proving, Horizontal Partitioning).
University of Michigan, USA
1985
http://hdl.handle.net/2027.42/160877
Brent Basso
Dashzeveg Bayarsaihan
Timothy James Becker
Claire M. Berg
John Bluis
Kei-Hoi Cheung
Lung-Yung Chu
Charles Giardina
J. Peter Gogarten
Wally Grajewski
Rohit Gupta
Patrick Harrington
Tham H. Hoang
Seung-Hyun Hong
Keki B. Irani
Salvatore Jaramillo
Pujan Joshi
Ivo Kalajzic
Saira Ali Kazmi
Yoo-Ah KimYoo Ah Kim
Winfried Krueger
Lynn Kuo
Richard T. Landers
Changhwan Lee
Joseph Leone
Jeong Seok Lim
Lei Liu
Leslie M. Loew
Oscar Luo
Jeffrey Maddox
Eladio J. Márquez
Fred J. Maryanski
Peter F. Maye
Francesca Menghi
Perry L. Miller
Prakash M. Nadkarni
Ravi Nori
Ravi Shankar Nori
Baikang Pei
François Rechenmann
David W. Rowe
Yijun Ruan
Kenneth E. Rudd
James C. Schaff
Fei Shi
Dong-Ju Shin
Taysir Hassan A. Soliman
Michael L. Stitzel
Asa Thibodeau
T. C. Ting
Duygu Ucar
Paola Vera-Licona
Nathan Viniconis
S. K. Wallfesh
Honglin Wang
Hsin-Wei Wang
Alan Wong
Riqiang Yan
Chenyu Zhang
Jinghui Zhang
Yue Zhao
Pinglei Zhou