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Publication search results
found 143 matches
- 2023
- Grégoire Prunier, Mehdi Cherkaoui, Albane Lysiak, Olivier Langella, Mélisande Blein-Nicolas, Virginie Lollier, Emile Benoist, Géraldine Jean, Guillaume Fertin, Hélène Rogniaux, Dominique Tessier:
Fast alignment of mass spectra in large proteomics datasets, capturing dissimilarities arising from multiple complex modifications of peptides. BMC Bioinform. 24(1): 421 (2023) - Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Géraldine Jean, Guillaume Fertin, Ulisses Dias, Zanoni Dias:
Reversal and Transposition Distance on Unbalanced Genomes Using Intergenic Information. J. Comput. Biol. 30(8): 861-876 (2023) - Andre Rodrigues Oliveira, Alexsandro Oliveira Alexandrino, Géraldine Jean, Guillaume Fertin, Ulisses Dias, Zanoni Dias:
Approximation algorithms for sorting by k-cuts on signed permutations. J. Comb. Optim. 45(1): 6 (2023) - Gabriel Siqueira, Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Géraldine Jean, Guillaume Fertin, Zanoni Dias:
Approximating Rearrangement Distances with Replicas and Flexible Intergenic Regions. ISBRA 2023: 241-254 - 2022
- Laurent Bulteau, Guillaume Fertin, Vincent Jugé, Stéphane Vialette:
Permutation Pattern Matching for Doubly Partially Ordered Patterns. CPM 2022: 21:1-21:17 - Guillaume Fertin, Oscar Fontaine, Géraldine Jean, Stéphane Vialette:
The Maximum Zero-Sum Partition Problem. ICS 2022: 73-85 - Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Géraldine Jean, Guillaume Fertin, Ulisses Dias, Zanoni Dias:
Transposition Distance Considering Intergenic Regions for Unbalanced Genomes. ISBRA 2022: 100-113 - Andre Rodrigues Oliveira, Alexsandro Oliveira Alexandrino, Géraldine Jean, Guillaume Fertin, Ulisses Dias, Zanoni Dias:
Sorting by k-Cuts on Signed Permutations. RECOMB-CG 2022: 189-204 - Guillaume Fertin, Géraldine Jean, Anthony Labarre:
Sorting Genomes by Prefix Double-Cut-and-Joins. SPIRE 2022: 178-190 - Emile Benoist, Guillaume Fertin, Géraldine Jean:
The Exact Subset MultiCover Problem. TAMC 2022: 189-200 - Guillaume Fertin, Géraldine Jean, Anthony Labarre:
Sorting Genomes by Prefix Double-Cut-and-Joins. CoRR abs/2208.14315 (2022) - 2021
- Laurent Bulteau, Guillaume Fertin, Géraldine Jean, Christian Komusiewicz:
Sorting by Multi-Cut Rearrangements. Algorithms 14(6): 169 (2021) - Albane Lysiak, Guillaume Fertin, Géraldine Jean, Dominique Tessier:
Evaluation of open search methods based on theoretical mass spectra comparison. BMC Bioinform. 22-S(2): 65 (2021) - Laurent Bulteau, Guillaume Fertin, Anthony Labarre, Romeo Rizzi, Irena Rusu:
Decomposing subcubic graphs into claws, paths or triangles. J. Graph Theory 98(4): 557-588 (2021) - Andre Rodrigues Oliveira, Géraldine Jean, Guillaume Fertin, Klairton Lima Brito, Laurent Bulteau, Ulisses Dias, Zanoni Dias:
Sorting Signed Permutations by Intergenic Reversals. IEEE ACM Trans. Comput. Biol. Bioinform. 18(6): 2870-2876 (2021) - Andre Rodrigues Oliveira, Géraldine Jean, Guillaume Fertin, Klairton Lima Brito, Ulisses Dias, Zanoni Dias:
Sorting Permutations by Intergenic Operations. IEEE ACM Trans. Comput. Biol. Bioinform. 18(6): 2080-2093 (2021) - Guillaume Fertin, Julien Fradin, Géraldine Jean:
The Maximum Colorful Arborescence problem: How (computationally) hard can it be? Theor. Comput. Sci. 852: 104-120 (2021) - Hugues Déprés, Guillaume Fertin, Éric Monfroy:
Improved Lower Bounds for the Cyclic Bandwidth Problem. ICCS (1) 2021: 555-569 - Laurent Bulteau, Guillaume Fertin, Géraldine Jean, Christian Komusiewicz:
Sorting by Multi-cut Rearrangements. SOFSEM 2021: 593-607 - 2020
- Klairton Lima Brito, Géraldine Jean, Guillaume Fertin, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias:
Sorting by Genome Rearrangements on Both Gene Order and Intergenic Sizes. J. Comput. Biol. 27(2): 156-174 (2020) - Guillaume Fertin, Christian Komusiewicz:
Graph Motif Problems Parameterized by Dual. J. Graph Algorithms Appl. 24(3): 371-396 (2020) - Andre Rodrigues Oliveira, Géraldine Jean, Guillaume Fertin, Klairton Lima Brito, Ulisses Dias, Zanoni Dias:
A 3.5-Approximation Algorithm for Sorting by Intergenic Transpositions. AlCoB 2020: 16-28 - 2019
- Andre Rodrigues Oliveira, Géraldine Jean, Guillaume Fertin, Ulisses Dias, Zanoni Dias:
Super short operations on both gene order and intergenic sizes. Algorithms Mol. Biol. 14(1): 21:1-21:17 (2019) - Guillaume Fertin, Matthieu David, Hélène Rogniaux, Dominique Tessier:
Mass Spectra Interpretation and the Interest of SpecFit for Identifying Uncommon Modifications. CIBB 2019: 80-89 - Laurent Bulteau, Konrad K. Dabrowski, Guillaume Fertin, Matthew Johnson, Daniël Paulusma, Stéphane Vialette:
Finding a Small Number of Colourful Components. CPM 2019: 20:1-20:14 - Klairton Lima Brito, Géraldine Jean, Guillaume Fertin, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias:
Sorting by Reversals, Transpositions, and Indels on Both Gene Order and Intergenic Sizes. ISBRA 2019: 28-39 - Guillaume Fertin, Samuele Giraudo, Sylvie Hamel, Stéphane Vialette:
Unshuffling Permutations: Trivial Bijections and Compositions. TAMC 2019: 242-261 - Guillaume Fertin, Christian Komusiewicz:
Graph Motif Problems Parameterized by Dual. CoRR abs/1908.03870 (2019) - 2018
- Andre Rodrigues Oliveira, Guillaume Fertin, Ulisses Dias, Zanoni Dias:
Sorting signed circular permutations by super short operations. Algorithms Mol. Biol. 13(1): 13:1-13:16 (2018) - Guillaume Fertin, Falk Hüffner, Christian Komusiewicz, Manuel Sorge:
Matching algorithms for assigning orthologs after genome duplication events. Comput. Biol. Chem. 74: 379-390 (2018)
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